Title: The Online Regularized K-Means Clustering Algorithm
Description: Algorithm of online regularized k-means to deal with online multi(single) view data.
The philosophy of the package is described in Guo G. (2020)
<doi:10.1080/02331888.2020.1823979>.
Author: Guangbao Guo [aut, cre] ,
Miao Yu [aut],
Haoyue Song [aut],
Ruiling Niu [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between ORKM versions 0.4.0.0 dated 2022-07-19 and 0.6.0.0 dated 2023-05-06
ORKM-0.4.0.0/ORKM/data/QCM.rda |only ORKM-0.4.0.0/ORKM/data/citesview1.rda |only ORKM-0.4.0.0/ORKM/data/citesview2.rda |only ORKM-0.4.0.0/ORKM/data/citesview3.rda |only ORKM-0.4.0.0/ORKM/data/citesview4.rda |only ORKM-0.4.0.0/ORKM/data/movie1.rda |only ORKM-0.4.0.0/ORKM/data/movie2.rda |only ORKM-0.4.0.0/ORKM/data/seed.rda |only ORKM-0.4.0.0/ORKM/man/QCM.Rd |only ORKM-0.4.0.0/ORKM/man/citesview1.Rd |only ORKM-0.4.0.0/ORKM/man/citesview2.Rd |only ORKM-0.4.0.0/ORKM/man/citesview3.Rd |only ORKM-0.4.0.0/ORKM/man/citesview4.Rd |only ORKM-0.4.0.0/ORKM/man/movie1.Rd |only ORKM-0.4.0.0/ORKM/man/movie2.Rd |only ORKM-0.4.0.0/ORKM/man/seed.Rd |only ORKM-0.6.0.0/ORKM/DESCRIPTION | 8 +-- ORKM-0.6.0.0/ORKM/MD5 | 74 +++++++++++++++++----------------- ORKM-0.6.0.0/ORKM/NAMESPACE | 30 ++++++------- ORKM-0.6.0.0/ORKM/R/DMC.R | 18 ++++---- ORKM-0.6.0.0/ORKM/R/KMeans.R | 16 +++---- ORKM-0.6.0.0/ORKM/R/OGD.R | 18 ++++---- ORKM-0.6.0.0/ORKM/R/OMU.R | 20 ++++----- ORKM-0.6.0.0/ORKM/R/ORKMeans.R | 26 +++++------ ORKM-0.6.0.0/ORKM/R/PKMeans.R | 17 +++---- ORKM-0.6.0.0/ORKM/R/RKMeans.R | 18 ++++---- ORKM-0.6.0.0/ORKM/data/QCMX.rda |only ORKM-0.6.0.0/ORKM/data/cora_view1.rda |only ORKM-0.6.0.0/ORKM/data/cora_view2.rda |only ORKM-0.6.0.0/ORKM/data/cora_view3.rda |only ORKM-0.6.0.0/ORKM/data/cora_view4.rda |only ORKM-0.6.0.0/ORKM/data/movie_1.rda |only ORKM-0.6.0.0/ORKM/data/movie_2.rda |only ORKM-0.6.0.0/ORKM/data/seedX.rda |only ORKM-0.6.0.0/ORKM/data/sobar.rda |binary ORKM-0.6.0.0/ORKM/man/DMC.Rd | 4 - ORKM-0.6.0.0/ORKM/man/INDEX.Rd | 2 ORKM-0.6.0.0/ORKM/man/KMeans.Rd | 4 - ORKM-0.6.0.0/ORKM/man/OGD.Rd | 4 - ORKM-0.6.0.0/ORKM/man/OMU.Rd | 4 - ORKM-0.6.0.0/ORKM/man/ORKMeans.Rd | 6 +- ORKM-0.6.0.0/ORKM/man/PKMeans.Rd | 4 - ORKM-0.6.0.0/ORKM/man/QCMX.Rd |only ORKM-0.6.0.0/ORKM/man/RKMeans.Rd | 4 - ORKM-0.6.0.0/ORKM/man/cora_view1.Rd |only ORKM-0.6.0.0/ORKM/man/cora_view2.Rd |only ORKM-0.6.0.0/ORKM/man/cora_view3.Rd |only ORKM-0.6.0.0/ORKM/man/cora_view4.Rd |only ORKM-0.6.0.0/ORKM/man/movie_1.Rd |only ORKM-0.6.0.0/ORKM/man/movie_2.Rd |only ORKM-0.6.0.0/ORKM/man/seedX.Rd |only ORKM-0.6.0.0/ORKM/man/sobar.Rd | 31 ++------------ ORKM-0.6.0.0/ORKM/man/turelabel.Rd | 2 ORKM-0.6.0.0/ORKM/tests/testthat.R | 8 +++ 54 files changed, 152 insertions(+), 166 deletions(-)
Title: High Dimensional Geometry, Set Operations, Projection, and
Inference Using Kernel Density Estimation, Support Vector
Machines, and Convex Hulls
Description: Estimates the shape and volume of high-dimensional datasets and performs set operations: intersection / overlap, union, unique components, inclusion test, and hole detection. Uses stochastic geometry approach to high-dimensional kernel density estimation, support vector machine delineation, and convex hull generation. Applications include modeling trait and niche hypervolumes and species distribution modeling.
Author: Benjamin Blonder, with contributions from Cecina Babich Morrow, David J. Harris, Stuart Brown, Gregoire Butruille, Alex Laini, and Dan Chen
Maintainer: Benjamin Blonder <benjamin.blonder@berkeley.edu>
Diff between hypervolume versions 3.1.0 dated 2022-11-15 and 3.1.1 dated 2023-05-06
DESCRIPTION | 12 +-- MD5 | 35 +++++++---- NAMESPACE | 6 + R/hypervolume_plot.R | 12 +-- R/hypervolume_project.R | 2 R/n_occupancy_function.R | 22 +++--- build/partial.rdb |binary build/vignette.rds |binary data/acacia_pinus.rda |only data/circles.rda |only inst/doc/Hypervolume-Resampling.html | 111 +++++++++++++++++------------------ inst/doc/occupancy.R |only inst/doc/occupancy.Rmd |only inst/doc/occupancy.html |only man/acacia_pinus.Rd |only man/circles.Rd |only man/plot.Hypervolume.Rd | 2 src/Makevars | 1 src/Makevars.win | 1 vignettes/g1.png |only vignettes/g2.png |only vignettes/g3.png |only vignettes/g4.png |only vignettes/occupancy.Rmd |only vignettes/simulation_results.png |only 25 files changed, 109 insertions(+), 95 deletions(-)
Title: Lightweight Well-Known Geometry Parsing
Description: Provides a minimal R and C++ API for parsing
well-known binary and well-known text representation of
geometries to and from R-native formats.
Well-known binary is compact
and fast to parse; well-known text is human-readable
and is useful for writing tests. These formats are
useful in R only if the information they contain can be
accessed in R, for which high-performance functions
are provided here.
Author: Dewey Dunnington [aut, cre] ,
Edzer Pebesma [aut]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between wk versions 0.7.2 dated 2023-03-17 and 0.7.3 dated 2023-05-06
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/utils.R | 6 ++++++ tests/testthat/Rplots.pdf |binary tests/testthat/test-grd-subset.R | 4 ++-- tests/testthat/test-pkg-sf.R | 15 +++++++++++---- tests/testthat/test-sfc-writer.R | 10 +++++----- 8 files changed, 38 insertions(+), 21 deletions(-)
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is
a socket library providing high-performance scalability protocols, a
cross-platform standard for messaging and communications. Serves as a
concurrency framework for building distributed applications, utilising 'aio'
objects which resolve automatically upon completion of asynchronous
operations. Implements synchronisation primitives, allowing R to wait upon
events being signalled by concurrent messaging threads.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between nanonext versions 0.8.2 dated 2023-04-14 and 0.8.3 dated 2023-05-06
nanonext-0.8.2/nanonext/inst/mbedtls-869298b.tar.xz |only nanonext-0.8.2/nanonext/inst/nng-8e1836f.tar.xz |only nanonext-0.8.3/nanonext/DESCRIPTION | 6 nanonext-0.8.3/nanonext/MD5 | 87 +++++---- nanonext-0.8.3/nanonext/NAMESPACE | 5 nanonext-0.8.3/nanonext/NEWS.md | 18 ++ nanonext-0.8.3/nanonext/R/aio.R | 3 nanonext-0.8.3/nanonext/R/context.R | 54 +++--- nanonext-0.8.3/nanonext/R/docs.R | 3 nanonext-0.8.3/nanonext/R/listdial.R | 1 nanonext-0.8.3/nanonext/R/messenger.R | 5 nanonext-0.8.3/nanonext/R/nano.R | 30 ++- nanonext-0.8.3/nanonext/R/nanonext-package.R | 1 nanonext-0.8.3/nanonext/R/ncurl.R | 22 +- nanonext-0.8.3/nanonext/R/opts.R | 1 nanonext-0.8.3/nanonext/R/sendrecv.R | 1 nanonext-0.8.3/nanonext/R/socket.R | 1 nanonext-0.8.3/nanonext/R/stats.R | 1 nanonext-0.8.3/nanonext/R/stream.R | 3 nanonext-0.8.3/nanonext/R/sync.R | 62 ++++++- nanonext-0.8.3/nanonext/R/tls.R | 1 nanonext-0.8.3/nanonext/R/utils.R | 22 ++ nanonext-0.8.3/nanonext/README.md | 56 +++--- nanonext-0.8.3/nanonext/configure | 6 nanonext-0.8.3/nanonext/configure.ucrt | 4 nanonext-0.8.3/nanonext/inst/mbedtls-1873d3b.tar.xz |only nanonext-0.8.3/nanonext/inst/nng-c5e9d8a.tar.xz |only nanonext-0.8.3/nanonext/man/context.Rd | 10 - nanonext-0.8.3/nanonext/man/cv.Rd | 11 + nanonext-0.8.3/nanonext/man/dot-context.Rd |only nanonext-0.8.3/nanonext/man/figures/logo.png |binary nanonext-0.8.3/nanonext/man/lock.Rd | 2 nanonext-0.8.3/nanonext/man/msleep.Rd | 9 - nanonext-0.8.3/nanonext/man/nanonext_version.Rd |only nanonext-0.8.3/nanonext/man/ncurl.Rd | 18 +- nanonext-0.8.3/nanonext/man/pipe_notify.Rd | 8 nanonext-0.8.3/nanonext/man/request.Rd | 19 -- nanonext-0.8.3/nanonext/man/timed_signal.Rd |only nanonext-0.8.3/nanonext/src/Makevars.win | 6 nanonext-0.8.3/nanonext/src/aio.c | 175 ++++++++++---------- nanonext-0.8.3/nanonext/src/core.c | 60 +++--- nanonext-0.8.3/nanonext/src/init.c | 35 ++-- nanonext-0.8.3/nanonext/src/nanonext.h | 28 +-- nanonext-0.8.3/nanonext/src/protocol.c | 3 nanonext-0.8.3/nanonext/src/thread.c | 72 +++++++- nanonext-0.8.3/nanonext/src/tls.c | 16 + nanonext-0.8.3/nanonext/src/utils.c | 11 - nanonext-0.8.3/nanonext/tests/tests.R | 28 ++- 48 files changed, 570 insertions(+), 334 deletions(-)
Title: R Interface to a 'PostGIS' Database
Description: Provides an interface between R and 'PostGIS'-enabled
'PostgreSQL' databases to transparently transfer spatial
data. Both vector (points, lines, polygons) and raster data are
supported in read and write modes. Also provides convenience
functions to execute common procedures in 'PostgreSQL/PostGIS'.
Author: Mathieu Basille [aut] ,
David Bucklin [aut, cre]
Maintainer: David Bucklin <david.bucklin@gmail.com>
Diff between rpostgis versions 1.4.3 dated 2019-11-20 and 1.4.4 dated 2023-05-06
DESCRIPTION | 18 +++--- MD5 | 33 +++++++---- NEWS.md | 6 ++ R/dbUtils_notExported.R | 99 +++++++++++++++++------------------ R/pgGetRast.R | 2 R/pgWriteRast.R | 6 +- R/rpostgis-package.R | 1 R/startup.R |only README.md | 72 +++++++++++++++++-------- inst/CITATION | 13 +--- man/dbTableNameFix.Rd | 17 +++--- man/figures/Rlogo.svg |only man/figures/postgis-logo-body.png |only man/figures/postgis-logo-head.png |only man/figures/postgis-logo-head2.png |only man/figures/postgis-logo.png |only man/figures/rpostgis-1024-transp.png |only man/figures/rpostgis-1024-white.png |only man/figures/rpostgis-200-transp.png |only man/figures/rpostgis-200-white.png |only man/figures/rpostgis.svg |only man/pgWriteRast.Rd | 2 man/rpostgis.Rd | 1 23 files changed, 157 insertions(+), 113 deletions(-)
Title: Miscellaneous, Analytic R Kernels
Description: Miscellaneous functions and wrappers for development in other
packages created, maintained by Jordan Mark Barbone.
Author: Jordan Mark Barbone [aut, cph, cre]
Maintainer: Jordan Mark Barbone <jmbarbone@gmail.com>
Diff between mark versions 0.5.3 dated 2022-10-16 and 0.6.0 dated 2023-05-06
mark-0.5.3/mark/R/flip.R |only mark-0.5.3/mark/R/match.R |only mark-0.5.3/mark/R/percent_rank.R |only mark-0.5.3/mark/R/struct.R |only mark-0.5.3/mark/man/flip.Rd |only mark-0.5.3/mark/man/grapes-colons-grapes.Rd |only mark-0.5.3/mark/man/match_ext.Rd |only mark-0.5.3/mark/man/muffle.Rd |only mark-0.5.3/mark/man/quick_df.Rd |only mark-0.5.3/mark/man/require_namespace.Rd |only mark-0.5.3/mark/man/struct.Rd |only mark-0.5.3/mark/tests/testthat/_snaps/diff-time.md |only mark-0.5.3/mark/tests/testthat/test-flip.R |only mark-0.5.3/mark/tests/testthat/test-mark-package.R |only mark-0.5.3/mark/tests/testthat/test-na-assignments.R |only mark-0.5.3/mark/tests/testthat/test-percentile_rank.R |only mark-0.6.0/mark/DESCRIPTION | 13 mark-0.6.0/mark/MD5 | 289 ++++++++---------- mark-0.6.0/mark/NAMESPACE | 35 +- mark-0.6.0/mark/NEWS.md | 28 + mark-0.6.0/mark/R/append.R | 15 mark-0.6.0/mark/R/apply.R | 14 mark-0.6.0/mark/R/array.R | 19 - mark-0.6.0/mark/R/base-conversion.R | 84 ++++- mark-0.6.0/mark/R/between-more.R | 21 - mark-0.6.0/mark/R/bib.R | 65 +++- mark-0.6.0/mark/R/blank.R |only mark-0.6.0/mark/R/boolean.R | 2 mark-0.6.0/mark/R/char2fact.R | 13 mark-0.6.0/mark/R/clipboard.R | 80 +++- mark-0.6.0/mark/R/counts.R | 18 - mark-0.6.0/mark/R/dataframes.R | 189 +++++------ mark-0.6.0/mark/R/dates.R | 91 +++-- mark-0.6.0/mark/R/depth.R | 2 mark-0.6.0/mark/R/description.R | 72 ++-- mark-0.6.0/mark/R/detail.R | 17 - mark-0.6.0/mark/R/diff-time.R | 102 ++++-- mark-0.6.0/mark/R/directory.R | 148 ++++++--- mark-0.6.0/mark/R/echo.R |only mark-0.6.0/mark/R/environments.R | 9 mark-0.6.0/mark/R/expand.R | 42 ++ mark-0.6.0/mark/R/fact.R | 9 mark-0.6.0/mark/R/fct_expand_seq.R | 45 +- mark-0.6.0/mark/R/fizzbuzz.R | 9 mark-0.6.0/mark/R/funs.R | 45 -- mark-0.6.0/mark/R/handlers.R | 71 +--- mark-0.6.0/mark/R/identical.R | 20 + mark-0.6.0/mark/R/import.R | 19 - mark-0.6.0/mark/R/insert.R | 22 + mark-0.6.0/mark/R/labels.R | 90 +++-- mark-0.6.0/mark/R/limit.R | 18 - mark-0.6.0/mark/R/logic.R | 52 +-- mark-0.6.0/mark/R/map.R | 4 mark-0.6.0/mark/R/mark-package.R | 5 mark-0.6.0/mark/R/match-arg.R | 104 +++++- mark-0.6.0/mark/R/na-assignment.R | 71 +++- mark-0.6.0/mark/R/names.R | 25 - mark-0.6.0/mark/R/namespace.R | 2 mark-0.6.0/mark/R/nas.R | 35 -- mark-0.6.0/mark/R/normalize.R | 2 mark-0.6.0/mark/R/not-available.R | 33 +- mark-0.6.0/mark/R/note.R | 39 +- mark-0.6.0/mark/R/options.R | 26 + mark-0.6.0/mark/R/paste.R | 8 mark-0.6.0/mark/R/percentile-rank.R |only mark-0.6.0/mark/R/pseudo-id.R | 7 mark-0.6.0/mark/R/recode.R | 19 - mark-0.6.0/mark/R/reexports-fuj.R |only mark-0.6.0/mark/R/reexports-magrittr.R |only mark-0.6.0/mark/R/round-by.R | 10 mark-0.6.0/mark/R/row-bind.R | 12 mark-0.6.0/mark/R/searches.R | 5 mark-0.6.0/mark/R/sort-by.R | 6 mark-0.6.0/mark/R/sourcing.R | 82 +++-- mark-0.6.0/mark/R/stats.R | 4 mark-0.6.0/mark/R/strings.R | 6 mark-0.6.0/mark/R/switch.R | 81 ++++- mark-0.6.0/mark/R/time-report.R | 16 mark-0.6.0/mark/R/todo.R | 49 ++- mark-0.6.0/mark/R/unlist.R | 12 mark-0.6.0/mark/R/utils.R | 126 ++----- mark-0.6.0/mark/R/zzz.R | 2 mark-0.6.0/mark/README.md | 2 mark-0.6.0/mark/man/between_more.Rd | 3 mark-0.6.0/mark/man/blank_values.Rd |only mark-0.6.0/mark/man/char2fact.Rd | 2 mark-0.6.0/mark/man/clipboard.Rd | 35 +- mark-0.6.0/mark/man/diff_time.Rd | 17 - mark-0.6.0/mark/man/echo.Rd |only mark-0.6.0/mark/man/fct_expand_seq.Rd | 7 mark-0.6.0/mark/man/get_dir_max_number.Rd | 3 mark-0.6.0/mark/man/get_version.Rd | 7 mark-0.6.0/mark/man/handlers.Rd | 13 mark-0.6.0/mark/man/list_environments.Rd | 3 mark-0.6.0/mark/man/logic_ext.Rd | 21 - mark-0.6.0/mark/man/mark.Rd | 2 mark-0.6.0/mark/man/match_param.Rd | 20 + mark-0.6.0/mark/man/na_cols.Rd | 6 mark-0.6.0/mark/man/note.Rd | 19 - mark-0.6.0/mark/man/package_available.Rd |only mark-0.6.0/mark/man/percentile_rank.Rd | 2 mark-0.6.0/mark/man/reexports.Rd | 27 + mark-0.6.0/mark/man/reindex.Rd | 4 mark-0.6.0/mark/man/round_by.Rd | 3 mark-0.6.0/mark/man/row_bind.Rd | 2 mark-0.6.0/mark/man/set_names0.Rd | 12 mark-0.6.0/mark/man/source_to_env.Rd | 3 mark-0.6.0/mark/man/unlist0.Rd | 7 mark-0.6.0/mark/tests/spelling.R | 2 mark-0.6.0/mark/tests/testthat/Rplots.pdf |binary mark-0.6.0/mark/tests/testthat/test-apply.R | 10 mark-0.6.0/mark/tests/testthat/test-array.R | 4 mark-0.6.0/mark/tests/testthat/test-base-conversion.R | 25 - mark-0.6.0/mark/tests/testthat/test-between-more.R | 6 mark-0.6.0/mark/tests/testthat/test-bib.R | 11 mark-0.6.0/mark/tests/testthat/test-blank.R |only mark-0.6.0/mark/tests/testthat/test-char2fact.R | 2 mark-0.6.0/mark/tests/testthat/test-clipboard.R | 2 mark-0.6.0/mark/tests/testthat/test-counts.R | 23 - mark-0.6.0/mark/tests/testthat/test-dataframes.R | 32 + mark-0.6.0/mark/tests/testthat/test-dates.R | 17 - mark-0.6.0/mark/tests/testthat/test-description.R | 8 mark-0.6.0/mark/tests/testthat/test-detail.R | 7 mark-0.6.0/mark/tests/testthat/test-diff-time.R | 32 - mark-0.6.0/mark/tests/testthat/test-directory.R | 17 - mark-0.6.0/mark/tests/testthat/test-expand.R | 19 - mark-0.6.0/mark/tests/testthat/test-fact.R | 22 - mark-0.6.0/mark/tests/testthat/test-fct-expand-seq.R | 16 mark-0.6.0/mark/tests/testthat/test-fizzbuzz.R | 8 mark-0.6.0/mark/tests/testthat/test-funs.R | 12 mark-0.6.0/mark/tests/testthat/test-identical.R | 8 mark-0.6.0/mark/tests/testthat/test-import.R | 2 mark-0.6.0/mark/tests/testthat/test-insert.R | 9 mark-0.6.0/mark/tests/testthat/test-labels.R | 41 +- mark-0.6.0/mark/tests/testthat/test-limit.R | 10 mark-0.6.0/mark/tests/testthat/test-logic.R | 16 mark-0.6.0/mark/tests/testthat/test-match-arg.R | 31 + mark-0.6.0/mark/tests/testthat/test-match.R | 4 mark-0.6.0/mark/tests/testthat/test-na-assignment.R |only mark-0.6.0/mark/tests/testthat/test-names.R | 16 mark-0.6.0/mark/tests/testthat/test-namespace.R | 4 mark-0.6.0/mark/tests/testthat/test-nas.R | 16 mark-0.6.0/mark/tests/testthat/test-not-available.R | 4 mark-0.6.0/mark/tests/testthat/test-note.R | 8 mark-0.6.0/mark/tests/testthat/test-options.R | 9 mark-0.6.0/mark/tests/testthat/test-out.R | 15 mark-0.6.0/mark/tests/testthat/test-paste.R | 2 mark-0.6.0/mark/tests/testthat/test-percentile-rank.R |only mark-0.6.0/mark/tests/testthat/test-pseudo_id.R | 12 mark-0.6.0/mark/tests/testthat/test-recode.R | 4 mark-0.6.0/mark/tests/testthat/test-round-by.R | 2 mark-0.6.0/mark/tests/testthat/test-searches.R | 2 mark-0.6.0/mark/tests/testthat/test-sourcing.R | 6 mark-0.6.0/mark/tests/testthat/test-strings.R | 36 +- mark-0.6.0/mark/tests/testthat/test-struct.R | 1 mark-0.6.0/mark/tests/testthat/test-switch.R | 16 mark-0.6.0/mark/tests/testthat/test-todos.R | 8 mark-0.6.0/mark/tests/testthat/test-unlist.R | 2 mark-0.6.0/mark/tests/testthat/test-utils.R | 18 - 159 files changed, 2078 insertions(+), 1278 deletions(-)
Title: Infinitesimally Robust Estimators for Preprocessing -Omics Data
Description: Functions for the determination of optimally robust influence curves and
estimators for preprocessing omics data, in particular gene expression data.
Author: Matthias Kohl [aut, cre, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between RobLoxBioC versions 1.2.0 dated 2019-04-11 and 1.2.1 dated 2023-05-06
DESCRIPTION | 18 ++-- MD5 | 16 +-- R/robloxbiocBeadLevelData.R | 4 inst/CITATION | 17 +--- inst/NEWS | 12 ++ inst/scripts/IlluminaExample.R | 2 inst/scripts/IlluminaReproducibility.R | 2 man/0RobLoxBioC-package.Rd | 119 ++++++++++++++-------------- man/SimStudies.Rd | 139 ++++++++++++++++----------------- 9 files changed, 169 insertions(+), 160 deletions(-)
Title: Read and Write 'jamovi' Files ('.omv')
Description: The free and open a statistical spreadsheet 'jamovi'
(<https://www.jamovi.org>) aims to make statistical analyses easy and
intuitive. 'jamovi' produces syntax that can directly be used in R (in
connection with the R-package 'jmv'). Having import / export routines for
the data files 'jamovi' produces ('.omv') permits an easy transfer of
analyses between 'jamovi' and R.
Author: Sebastian Jentschke [aut, cre]
Maintainer: Sebastian Jentschke <sebastian.jentschke@uib.no>
Diff between jmvReadWrite versions 0.3.3 dated 2022-08-09 and 0.3.4 dated 2023-05-06
DESCRIPTION | 8 - MD5 | 60 ++++---- NEWS.md | 7 R/convert_to_omv.R | 48 +++--- R/globals.R | 80 +++++----- R/merge_cols_omv.R | 76 +++++----- R/merge_rows_omv.R | 78 +++++----- R/read_omv.R | 261 ++++++++++++++++++----------------- R/sort_omv.R | 46 +++--- R/write_omv.R | 236 ++++++++++++++++--------------- README.md | 56 +++---- build/vignette.rds |binary inst/doc/jmvReadWrite.R | 52 +++--- inst/doc/jmvReadWrite.Rmd | 54 +++---- inst/doc/jmvReadWrite.html | 73 +++++---- man/convert_to_omv.Rd | 38 ++--- man/merge_cols_omv.Rd | 30 ++-- man/merge_rows_omv.Rd | 36 ++-- man/read_omv.Rd | 14 - man/sort_omv.Rd | 26 +-- man/write_omv.Rd | 16 +- tests/testthat/test-convert_to_omv.R | 24 +-- tests/testthat/test-globals.R | 50 +++--- tests/testthat/test-long2wide_omv.R | 82 +++++----- tests/testthat/test-merge_cols_omv.R | 72 ++++----- tests/testthat/test-merge_rows_omv.R | 84 +++++------ tests/testthat/test-read_omv.R | 226 +++++++++++++++--------------- tests/testthat/test-sort_omv.R | 40 ++--- tests/testthat/test-wide2long_omv.R | 82 +++++----- tests/testthat/test-write_omv.R | 78 +++++----- vignettes/jmvReadWrite.Rmd | 54 +++---- 31 files changed, 1065 insertions(+), 1022 deletions(-)
Title: Visible Vowels: Visualization of Vowel Variation
Description: Visualizes vowel variation in f0, F1, F2, F3 and duration.
Author: Wilbert Heeringa [aut, cre],
Hans Van de Velde [aut]
Maintainer: Wilbert Heeringa <wheeringa@fryske-akademy.nl>
Diff between visvow versions 1.3.8 dated 2023-04-19 and 1.3.9 dated 2023-05-06
DESCRIPTION | 10 - MD5 | 8 - NAMESPACE | 3 R/visvow.R | 290 +++++++++++++++++++++++++----------------------------- build/partial.rdb |binary 5 files changed, 148 insertions(+), 163 deletions(-)
Title: Financial and Actuarial Mathematics for Life Contingencies
Description: Classes and methods that allow the user to manage life table,
actuarial tables (also multiple decrements tables). Moreover, functions to easily
perform demographic, financial and actuarial mathematics on life contingencies
insurances calculations are contained therein. See Spedicato (2013) <doi:10.18637/jss.v055.i10>.
Author: Giorgio Alfredo Spedicato [aut, cre]
,
Christophe Dutang [ctb] ,
Reinhold Kainhofer [ctb] ,
Kevin J Owens [ctb],
Ernesto Schirmacher [ctb],
Gian Paolo Clemente [ctb] ,
Ivan Williams [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between lifecontingencies versions 1.3.9 dated 2022-06-10 and 1.3.10 dated 2023-05-06
lifecontingencies-1.3.10/lifecontingencies/DESCRIPTION | 12 lifecontingencies-1.3.10/lifecontingencies/MD5 | 82 + lifecontingencies-1.3.10/lifecontingencies/NEWS.md |only lifecontingencies-1.3.10/lifecontingencies/R/4_financialFunctions.R | 60 - lifecontingencies-1.3.10/lifecontingencies/R/8_mdtFunctions.R | 4 lifecontingencies-1.3.10/lifecontingencies/R/data.R | 7 lifecontingencies-1.3.10/lifecontingencies/build/vignette.rds |binary lifecontingencies-1.3.10/lifecontingencies/data/AF92Lt.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/AM92Lt.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/SoAISTdata.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/de_angelis_di_falco.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/demoCanada.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/demoChina.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/demoFrance.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/demoGermany.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/demoIta.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/demoJapan.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/demoUk.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/demoUsa.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/soa08.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/soa08Act.rda |binary lifecontingencies-1.3.10/lifecontingencies/data/soaLt.rda |binary lifecontingencies-1.3.10/lifecontingencies/inst/CITATION | 30 lifecontingencies-1.3.10/lifecontingencies/inst/doc/PensionPlanVal.R | 26 lifecontingencies-1.3.10/lifecontingencies/inst/doc/PensionPlanVal.html | 307 +++---- lifecontingencies-1.3.10/lifecontingencies/inst/doc/an_introduction_to_lifecontingencies_package.Rnw | 1 lifecontingencies-1.3.10/lifecontingencies/inst/doc/an_introduction_to_lifecontingencies_package.pdf |binary lifecontingencies-1.3.10/lifecontingencies/inst/doc/compute-detail.R | 8 lifecontingencies-1.3.10/lifecontingencies/inst/doc/compute-detail.pdf |binary lifecontingencies-1.3.10/lifecontingencies/inst/doc/mortality_projection.R |only lifecontingencies-1.3.10/lifecontingencies/inst/doc/mortality_projection.Rnw |only lifecontingencies-1.3.10/lifecontingencies/inst/doc/mortality_projection.pdf |only lifecontingencies-1.3.10/lifecontingencies/inst/doc/pensionfunding.R | 20 lifecontingencies-1.3.10/lifecontingencies/inst/doc/pensionfunding.html | 417 ++++------ lifecontingencies-1.3.10/lifecontingencies/man/demoJapan.Rd | 57 - lifecontingencies-1.3.10/lifecontingencies/man/demoUsa.Rd | 2 lifecontingencies-1.3.10/lifecontingencies/man/duration.Rd | 107 +- lifecontingencies-1.3.10/lifecontingencies/man/presentValue.Rd | 118 +- lifecontingencies-1.3.10/lifecontingencies/man/qxt.prime.fromMdt.Rd | 4 lifecontingencies-1.3.10/lifecontingencies/tests/test-computation-time-act-annuity.R | 11 lifecontingencies-1.3.10/lifecontingencies/tests/test-computation-time-demog.R | 10 lifecontingencies-1.3.10/lifecontingencies/vignettes/an_introduction_to_lifecontingencies_package.Rnw | 1 lifecontingencies-1.3.10/lifecontingencies/vignettes/mortality_projection.Rnw |only lifecontingencies-1.3.9/lifecontingencies/ChangeLog |only lifecontingencies-1.3.9/lifecontingencies/NEWS |only lifecontingencies-1.3.9/lifecontingencies/vignettes/mortality_projection.tex |only 46 files changed, 637 insertions(+), 647 deletions(-)
More information about lifecontingencies at CRAN
Permanent link
Title: 'SAS' Linear Model
Description: This is a core implementation of 'SAS' procedures for linear models - GLM, REG, ANOVA, FREQ, and UNIVARIATE. Some R packages provide type II and type III SS. However, the results of nested and complex designs are often different from those of 'SAS.' Different results does not necessarily mean incorrectness. However, many wants the same results to SAS. This package aims to achieve that.
Reference: Littell RC, Stroup WW, Freund RJ (2002, ISBN:0-471-22174-0).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between sasLM versions 0.9.7 dated 2023-04-05 and 0.9.8 dated 2023-05-06
sasLM-0.9.7/sasLM/R/LIbin.R |only sasLM-0.9.7/sasLM/R/LInorm.R |only sasLM-0.9.7/sasLM/R/LIpois.R |only sasLM-0.9.7/sasLM/R/RDLI.R |only sasLM-0.9.7/sasLM/inst/doc/Report-Different-Simplest2303161228.pdf |only sasLM-0.9.7/sasLM/inst/doc/Report-NOT-OKs2303161229.pdf |only sasLM-0.9.7/sasLM/inst/doc/Validation-Report-GLM-2303161229.pdf |only sasLM-0.9.7/sasLM/man/LIbin.Rd |only sasLM-0.9.7/sasLM/man/LInorm.Rd |only sasLM-0.9.7/sasLM/man/LIpois.Rd |only sasLM-0.9.7/sasLM/man/RDLI.Rd |only sasLM-0.9.8/sasLM/DESCRIPTION | 6 sasLM-0.9.8/sasLM/MD5 | 42 ++---- sasLM-0.9.8/sasLM/R/CIest.R | 2 sasLM-0.9.8/sasLM/R/RanTest.R | 16 +- sasLM-0.9.8/sasLM/R/ScoreCI.R | 2 sasLM-0.9.8/sasLM/R/T3test.R | 65 +++------- sasLM-0.9.8/sasLM/inst/NEWS.Rd | 8 + sasLM-0.9.8/sasLM/inst/doc/Report-Different-Simplest2304080744.pdf |only sasLM-0.9.8/sasLM/inst/doc/Report-NOT-OKs2304080745.pdf |only sasLM-0.9.8/sasLM/inst/doc/Validation-Report-GLM-2304080746.pdf |only sasLM-0.9.8/sasLM/inst/doc/sasLM-manual.pdf |binary sasLM-0.9.8/sasLM/man/ScoreCI.Rd | 2 sasLM-0.9.8/sasLM/man/T3test.Rd | 8 - sasLM-0.9.8/sasLM/man/aov1.Rd | 2 sasLM-0.9.8/sasLM/man/aov2.Rd | 2 sasLM-0.9.8/sasLM/man/aov3.Rd | 2 sasLM-0.9.8/sasLM/man/sasLM-package.Rd | 3 sasLM-0.9.8/sasLM/tests/Test.R | 21 --- 29 files changed, 72 insertions(+), 109 deletions(-)
Title: Network Meta-Analysis using Frequentist Methods
Description: A comprehensive set of functions providing frequentist methods for network meta-analysis (Balduzzi et al., 2023) <doi:10.18637/jss.v106.i02> and supporting Schwarzer et al. (2015) <doi:10.1007/978-3-319-21416-0>, Chapter 8 "Network Meta-Analysis":
- frequentist network meta-analysis following Rücker (2012) <doi:10.1002/jrsm.1058>;
- additive network meta-analysis for combinations of treatments (Rücker et al., 2020) <doi:10.1002/bimj.201800167>;
- network meta-analysis of binary data using the Mantel-Haenszel or non-central hypergeometric distribution method (Efthimiou et al., 2019) <doi:10.1002/sim.8158>;
- rankograms and ranking of treatments by the Surface under the cumulative ranking curve (SUCRA) (Salanti et al., 2013) <doi:10.1016/j.jclinepi.2010.03.016>;
- ranking of treatments using P-scores (frequentist analogue of SUCRAs without resampling) according to Rücker & Schwarzer (2015) <doi:10.1186/s12874-015-0060-8>;
- split direct and i [...truncated...]
Author: Gerta Ruecker [aut] ,
Ulrike Krahn [aut],
Jochem Koenig [aut] ,
Orestis Efthimiou [aut] ,
Annabel Davies [aut] ,
Theodoros Papakonstantinou [aut]
,
Guido Schwarzer [aut, cre]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between netmeta versions 2.8-1 dated 2023-03-16 and 2.8-2 dated 2023-05-06
DESCRIPTION | 11 +++-- MD5 | 12 ++++-- NEWS.md | 15 +++++++ R/meta-format.R | 100 --------------------------------------------------- R/netgraph.netmeta.R | 70 ++++++++++++++++++++--------------- build |only inst/doc |only vignettes |only 8 files changed, 69 insertions(+), 139 deletions(-)
Title: Fast and Easy Eurostat Data Import and Search
Description: Interface to Eurostat’s API (SDMX 2.1) with fast data.table-based import of
data, labels, and metadata. On top of the core functionality, data search and data
description/comparison functions are also provided.
Use <https://github.com/alekrutkowski/eurodata_codegen> — a point-and-click app for rapid and
easy generation of richly-commented R code — to import a Eurostat dataset or its subset
(based on the eurodata::importData() function).
Author: Aleksander Rutkowski [aut, cre]
Maintainer: Aleksander Rutkowski <alek.rutkowski@gmail.com>
Diff between eurodata versions 1.6.1 dated 2023-01-23 and 1.7.0 dated 2023-05-06
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- R/const.R | 3 --- R/core_import.R | 18 ++++++++++++------ R/extras.R | 15 +++++++++------ README.md | 15 ++++++++------- man/describe.Rd | 5 +++-- man/importData.Rd | 3 +++ man/importDimLabel.Rd | 10 ++++++---- 9 files changed, 55 insertions(+), 42 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-19 15.2.5
2021-01-19 15.2.2
2020-09-30 15.1.7
2020-07-27 15.0.2
2020-03-30 14.3.19
2020-02-06 14.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-02 0.2.0
2021-12-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-02 0.9.10
2021-03-21 0.9.9
2018-05-23 0.9.8-1
2017-05-01 0.9.7
2016-09-24 0.9.5
2016-04-15 0.9.4
2015-12-06 0.9.3
2015-07-14 0.9.1
2015-05-06 0.8.1
2013-09-05 0.6
2013-04-15 0.5.4
2012-08-23 0.5.2
Title: Fast Kriging and Geostatistics on Grids with Kronecker
Covariance
Description: Geostatistical modeling and kriging with
gridded data using spatially separable covariance functions (Kronecker
covariances). Kronecker products in these models provide shortcuts for
solving large matrix problems in likelihood and conditional mean,
making 'snapKrig' computationally efficient with large grids. The package
supplies its own S3 grid object class, and a host of methods including
plot, print, Ops, square bracket replace/assign, and more. Our computational
methods are described in Koch, Lele, Lewis (2020) <doi:10.7939/r3-g6qb-bq70>.
Author: Dean Koch [aut, cre, cph]
Maintainer: Dean Koch <dkoch@ualberta.ca>
Diff between snapKrig versions 0.0.1 dated 2023-01-09 and 0.0.2 dated 2023-05-06
snapKrig-0.0.1/snapKrig/vignettes/helpers.R |only snapKrig-0.0.2/snapKrig/DESCRIPTION | 6 snapKrig-0.0.2/snapKrig/MD5 | 36 ++--- snapKrig-0.0.2/snapKrig/NEWS.md | 24 +++ snapKrig-0.0.2/snapKrig/R/sk.R | 40 +++++- snapKrig-0.0.2/snapKrig/R/sk_estim.R | 2 snapKrig-0.0.2/snapKrig/R/sk_export.R | 11 + snapKrig-0.0.2/snapKrig/R/sk_methods.R | 8 - snapKrig-0.0.2/snapKrig/R/sk_plot.R | 3 snapKrig-0.0.2/snapKrig/README.md | 64 ++++++++-- snapKrig-0.0.2/snapKrig/build/vignette.rds |binary snapKrig-0.0.2/snapKrig/inst/doc/snapKrig_introduction.R | 12 + snapKrig-0.0.2/snapKrig/inst/doc/snapKrig_introduction.Rmd | 22 ++- snapKrig-0.0.2/snapKrig/inst/doc/snapKrig_introduction.html | 61 +++++---- snapKrig-0.0.2/snapKrig/man/figures/README-intro_down_plot-1.png |binary snapKrig-0.0.2/snapKrig/man/figures/README-intro_sim-1.png |binary snapKrig-0.0.2/snapKrig/man/figures/README-preview-1.png |only snapKrig-0.0.2/snapKrig/man/sk.Rd | 4 snapKrig-0.0.2/snapKrig/man/sk_plot.Rd | 3 snapKrig-0.0.2/snapKrig/vignettes/snapKrig_introduction.Rmd | 22 ++- 20 files changed, 222 insertions(+), 96 deletions(-)
Title: Enrichment Analysis Utilizing Active Subnetworks
Description: Enrichment analysis enables researchers to uncover mechanisms
underlying a phenotype. However, conventional methods for enrichment
analysis do not take into account protein-protein interaction information,
resulting in incomplete conclusions. pathfindR is a tool for enrichment
analysis utilizing active subnetworks. The main function identifies active
subnetworks in a protein-protein interaction network using a user-provided
list of genes and associated p values. It then performs enrichment analyses
on the identified subnetworks, identifying enriched terms (i.e. pathways or,
more broadly, gene sets) that possibly underlie the phenotype of interest.
pathfindR also offers functionalities to cluster the enriched terms and
identify representative terms in each cluster, to score the enriched terms
per sample and to visualize analysis results. The enrichment, clustering and
other methods implemented in pathfindR are described in detail in
Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R [...truncated...]
Author: Ege Ulgen [cre, cph] ,
Ozan Ozisik [aut]
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between pathfindR versions 1.6.4 dated 2022-08-25 and 2.0.0 dated 2023-05-06
pathfindR-1.6.4/pathfindR/R/active_snw_functions.R |only pathfindR-1.6.4/pathfindR/R/clustering_functions.R |only pathfindR-1.6.4/pathfindR/R/comparison_functions.R |only pathfindR-1.6.4/pathfindR/R/core_functions.R |only pathfindR-1.6.4/pathfindR/R/enrichment_functions.R |only pathfindR-1.6.4/pathfindR/R/visualization_functions.R |only pathfindR-1.6.4/pathfindR/tests/testthat/test-active_snw_functions.R |only pathfindR-1.6.4/pathfindR/tests/testthat/test-clustering_functions.R |only pathfindR-1.6.4/pathfindR/tests/testthat/test-comparison_functions.R |only pathfindR-1.6.4/pathfindR/tests/testthat/test-core_functions.R |only pathfindR-1.6.4/pathfindR/tests/testthat/test-enrichment_functions.R |only pathfindR-1.6.4/pathfindR/tests/testthat/test-visualization_functions.R |only pathfindR-2.0.0/pathfindR/DESCRIPTION | 12 pathfindR-2.0.0/pathfindR/MD5 | 197 +- pathfindR-2.0.0/pathfindR/NEWS.md | 14 pathfindR-2.0.0/pathfindR/R/active_snw_search.R |only pathfindR-2.0.0/pathfindR/R/clustering.R |only pathfindR-2.0.0/pathfindR/R/comparison.R |only pathfindR-2.0.0/pathfindR/R/core.R |only pathfindR-2.0.0/pathfindR/R/data_generation.R | 143 + pathfindR-2.0.0/pathfindR/R/enrichment.R |only pathfindR-2.0.0/pathfindR/R/scoring.R | 70 pathfindR-2.0.0/pathfindR/R/utility.R |only pathfindR-2.0.0/pathfindR/R/visualization.R |only pathfindR-2.0.0/pathfindR/R/zzz.R | 34 pathfindR-2.0.0/pathfindR/build/vignette.rds |binary pathfindR-2.0.0/pathfindR/inst/CITATION | 9 pathfindR-2.0.0/pathfindR/inst/doc/comparing_results.R | 30 pathfindR-2.0.0/pathfindR/inst/doc/comparing_results.Rmd | 32 pathfindR-2.0.0/pathfindR/inst/doc/comparing_results.html | 167 +- pathfindR-2.0.0/pathfindR/inst/doc/intro_vignette.R | 179 +- pathfindR-2.0.0/pathfindR/inst/doc/intro_vignette.Rmd | 212 +- pathfindR-2.0.0/pathfindR/inst/doc/intro_vignette.html | 767 +++++----- pathfindR-2.0.0/pathfindR/inst/doc/manual_execution.R | 83 - pathfindR-2.0.0/pathfindR/inst/doc/manual_execution.Rmd | 91 - pathfindR-2.0.0/pathfindR/inst/doc/manual_execution.html | 236 +-- pathfindR-2.0.0/pathfindR/inst/doc/non_hs_analysis.R | 81 - pathfindR-2.0.0/pathfindR/inst/doc/non_hs_analysis.Rmd | 83 - pathfindR-2.0.0/pathfindR/inst/doc/non_hs_analysis.html | 549 ++++--- pathfindR-2.0.0/pathfindR/inst/doc/obtain_data.R | 28 pathfindR-2.0.0/pathfindR/inst/doc/obtain_data.Rmd | 28 pathfindR-2.0.0/pathfindR/inst/doc/obtain_data.html | 156 +- pathfindR-2.0.0/pathfindR/inst/doc/visualization_vignette.R | 63 pathfindR-2.0.0/pathfindR/inst/doc/visualization_vignette.Rmd | 79 - pathfindR-2.0.0/pathfindR/inst/doc/visualization_vignette.html | 211 +- pathfindR-2.0.0/pathfindR/inst/java/ActiveSubnetworkSearch.jar |binary pathfindR-2.0.0/pathfindR/inst/rmd/enriched_terms.Rmd | 30 pathfindR-2.0.0/pathfindR/java/ActiveSubnetworkSearchAlgorithms/GeneticAlgorithm.java | 2 pathfindR-2.0.0/pathfindR/java/ActiveSubnetworkSearchAlgorithms/SimulatedAnnealing.java | 9 pathfindR-2.0.0/pathfindR/java/ActiveSubnetworkSearchMisc/ScoreCalculations.java | 10 pathfindR-2.0.0/pathfindR/java/Application/AppActiveSubnetworkSearch.java | 8 pathfindR-2.0.0/pathfindR/java/Application/Parameters.java | 3 pathfindR-2.0.0/pathfindR/man/UpSet_plot.Rd | 4 pathfindR-2.0.0/pathfindR/man/active_snw_enrichment_wrapper.Rd |only pathfindR-2.0.0/pathfindR/man/active_snw_search.Rd | 17 pathfindR-2.0.0/pathfindR/man/annotate_term_genes.Rd | 10 pathfindR-2.0.0/pathfindR/man/cluster_enriched_terms.Rd | 14 pathfindR-2.0.0/pathfindR/man/cluster_graph_vis.Rd | 2 pathfindR-2.0.0/pathfindR/man/color_kegg_pathway.Rd | 10 pathfindR-2.0.0/pathfindR/man/combine_pathfindR_results.Rd | 4 pathfindR-2.0.0/pathfindR/man/combined_results_graph.Rd | 10 pathfindR-2.0.0/pathfindR/man/configure_output_dir.Rd |only pathfindR-2.0.0/pathfindR/man/create_HTML_report.Rd |only pathfindR-2.0.0/pathfindR/man/create_kappa_matrix.Rd | 4 pathfindR-2.0.0/pathfindR/man/download_kegg_png.Rd | 2 pathfindR-2.0.0/pathfindR/man/enrichment.Rd | 10 pathfindR-2.0.0/pathfindR/man/enrichment_analyses.Rd | 10 pathfindR-2.0.0/pathfindR/man/enrichment_chart.Rd | 4 pathfindR-2.0.0/pathfindR/man/fetch_gene_set.Rd | 4 pathfindR-2.0.0/pathfindR/man/filterActiveSnws.Rd | 14 pathfindR-2.0.0/pathfindR/man/fuzzy_term_clustering.Rd | 2 pathfindR-2.0.0/pathfindR/man/hierarchical_term_clustering.Rd | 2 pathfindR-2.0.0/pathfindR/man/hyperg_test.Rd | 2 pathfindR-2.0.0/pathfindR/man/input_processing.Rd | 16 pathfindR-2.0.0/pathfindR/man/input_testing.Rd | 4 pathfindR-2.0.0/pathfindR/man/obtain_KEGGML_URL.Rd | 2 pathfindR-2.0.0/pathfindR/man/obtain_colored_url.Rd | 2 pathfindR-2.0.0/pathfindR/man/plot_scores.Rd | 8 pathfindR-2.0.0/pathfindR/man/return_pin_path.Rd | 2 pathfindR-2.0.0/pathfindR/man/run_pathfindR.Rd | 105 - pathfindR-2.0.0/pathfindR/man/score_terms.Rd | 6 pathfindR-2.0.0/pathfindR/man/summarize_enrichment_results.Rd | 2 pathfindR-2.0.0/pathfindR/man/term_gene_graph.Rd | 8 pathfindR-2.0.0/pathfindR/man/term_gene_heatmap.Rd | 4 pathfindR-2.0.0/pathfindR/man/visualize_active_subnetworks.Rd | 18 pathfindR-2.0.0/pathfindR/man/visualize_hsa_KEGG.Rd | 7 pathfindR-2.0.0/pathfindR/man/visualize_term_interactions.Rd | 2 pathfindR-2.0.0/pathfindR/man/visualize_terms.Rd | 2 pathfindR-2.0.0/pathfindR/tests/testthat-active_snw.R | 10 pathfindR-2.0.0/pathfindR/tests/testthat-clustering.R | 10 pathfindR-2.0.0/pathfindR/tests/testthat-comparison.R | 10 pathfindR-2.0.0/pathfindR/tests/testthat-core.R | 10 pathfindR-2.0.0/pathfindR/tests/testthat-data_generation.R | 8 pathfindR-2.0.0/pathfindR/tests/testthat-enrichment.R | 10 pathfindR-2.0.0/pathfindR/tests/testthat-scoring.R | 8 pathfindR-2.0.0/pathfindR/tests/testthat-utility.R |only pathfindR-2.0.0/pathfindR/tests/testthat-visualization.R | 10 pathfindR-2.0.0/pathfindR/tests/testthat-zzz.R | 8 pathfindR-2.0.0/pathfindR/tests/testthat/test-active_snw_search.R |only pathfindR-2.0.0/pathfindR/tests/testthat/test-clustering.R |only pathfindR-2.0.0/pathfindR/tests/testthat/test-comparison.R |only pathfindR-2.0.0/pathfindR/tests/testthat/test-core.R |only pathfindR-2.0.0/pathfindR/tests/testthat/test-data_generation.R | 84 - 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Title: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Description: General purpose TIFF file I/O for R users. Currently the
only such package with read and write support for TIFF files with
floating point (real-numbered) pixels, and the only package that can
correctly import TIFF files that were saved from 'ImageJ' and write
TIFF files than can be correctly read by 'ImageJ'
<https://imagej.nih.gov/ij/>. Also supports text image I/O.
Author: Rory Nolan [aut, cre] ,
Kent Johnson [aut],
Simon Urbanek [ctb],
Sergi Padilla-Parra [ths] ,
Jeroen Ooms [rev, ctb] ,
Jon Clayden [rev]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between ijtiff versions 2.3.0 dated 2023-01-16 and 2.3.1 dated 2023-05-06
DESCRIPTION | 6 ++--- MD5 | 18 +++++++-------- NEWS.md | 6 +++++ R/print.R | 1 README.md | 36 ++++++++++++------------------- inst/CITATION | 14 +----------- inst/doc/reading-and-writing-images.html | 16 ++++++------- inst/doc/text-images.html | 4 +-- inst/doc/the-imagej-problem.html | 4 +-- tests/testthat/test-io.R | 2 - 10 files changed, 49 insertions(+), 58 deletions(-)
Title: Bayesian Quantile Regression for Ordinal Models
Description: Package provides functions for estimation and inference in Bayesian quantile regression with ordinal outcomes. An ordinal model with 3 or more outcomes (labeled OR1 model) is estimated by a combination of Gibbs sampling and Metropolis-Hastings (MH) algorithm. Whereas an ordinal model with exactly 3 outcomes (labeled OR2 model) is estimated using a Gibbs sampling algorithm. The summary output presents the posterior mean, posterior standard deviation, 95% credible intervals, and the inefficiency factors along with the two model comparison measures – logarithm of marginal likelihood and the deviance information criterion (DIC). The package also provides functions for computing the covariate effects and other functions that aids either the estimation or inference in quantile ordinal models.
Rahman, M. A. (2016).“Bayesian Quantile Regression for Ordinal Models.” Bayesian Analysis, 11(1): 1-24 <doi: 10.1214/15-BA939>.
Yu, K., and Moyeed, R. A. (2001). “Bayesian Quantile Regression.” St [...truncated...]
Author: Mohammad Arshad Rahman Developer [aut],
Prajual Maheshwari [cre]
Maintainer: Prajual Maheshwari <prajual1391@gmail.com>
Diff between bqror versions 1.6.0 dated 2023-03-25 and 1.6.1 dated 2023-05-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/ORI.R | 2 +- tests/testthat/test-ODRI.R | 8 ++++---- 4 files changed, 11 insertions(+), 11 deletions(-)