Title: Make 'PICRUSt2' Output Analysis and Visualization Easier
Description: Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <arXiv:2303.10388>.
Author: Chen Yang [aut, cre],
Liangliang Zhang [aut]
Maintainer: Chen Yang <cafferychen7850@gmail.com>
Diff between ggpicrust2 versions 1.6.0 dated 2023-04-08 and 1.6.3 dated 2023-05-07
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/pathway_annotation.R | 34 +--------------------------------- R/pathway_errorbar.R | 18 +++++++++++++----- R/pathway_heatmap.R | 2 +- README.md | 29 ++++++++++++++++++++++++----- 7 files changed, 54 insertions(+), 53 deletions(-)
Title: Fractional Factorial Designs with 2-Level Factors
Description: Regular and non-regular Fractional Factorial 2-level designs
can be created. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias).
Author: Ulrike Groemping
Maintainer: Ulrike Groemping <ulrike.groemping@bht-berlin.de>
Diff between FrF2 versions 2.2-3 dated 2022-05-10 and 2.3 dated 2023-05-07
DESCRIPTION | 10 MD5 | 40 R/FrF2.R | 2 R/IAPlot.R | 25 R/MEPlot.R | 8 R/colpick.R | 21 R/utilcat.R | 28 build/partial.rdb |binary inst/CITATION | 8 inst/NEWS | 18 man/CatalogueAccessors.Rd | 2 man/FrF2-package.Rd | 4 man/FrF2.Rd | 26 man/IAPlot.Rd | 8 man/block.Rd | 27 man/blockpick.Rd | 2 man/estimable.2fis.Rd | 2 man/godolphin.Rd | 6 tests/FrF2test.Rout.save | 62 - tests/addcentertest.Rout.save | 1744 ++++++++++++++++---------------- tests/generators.summary.test.Rout.save | 11 21 files changed, 1051 insertions(+), 1003 deletions(-)
Title: Minimal Interface of the C++ 'MixtComp' Library for Mixture
Models with Heterogeneous and (Partially) Missing Data
Description: Mixture Composer <https://github.com/modal-inria/MixtComp> is a project to build mixture models with
heterogeneous data sets and partially missing data management.
It includes models for real, categorical, counting, functional and ranking data.
This package contains the minimal R interface of the C++ 'MixtComp' library.
Author: Vincent Kubicki [aut],
Christophe Biernacki [aut],
Quentin Grimonprez [aut, cre],
Serge Iovleff [ctb],
Matthieu Marbac-Lourdelle [ctb],
Étienne Goffinet [ctb],
Patrick Wieschollek [ctb] ,
Tobias Wood [ctb] ,
Julien Vandaele [ctb]
Maintainer: Quentin Grimonprez <quentingrim@yahoo.fr>
Diff between RMixtCompIO versions 4.0.9 dated 2023-02-13 and 4.0.10 dated 2023-05-07
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 8 +++++++- src/RGraph.cpp | 2 +- src/RGraph.h | 2 +- tests/testthat/test.run.R | 2 +- 6 files changed, 19 insertions(+), 13 deletions(-)
Title: Processing METAR Weather Reports
Description: Allows to download current and historical METAR weather reports
extract and parse basic parameters and present main weather information.
Current reports are downloaded from Aviation Weather Center
<https://www.aviationweather.gov/metar> and historical reports from
Iowa Environmental Mesonet web page of Iowa State University
ASOS-AWOS-METAR <http://mesonet.agron.iastate.edu/AWOS/>.
Author: Pawel Cwiek [aut, cre],
David Megginson [ctb] ,
Greg Thompson [ctb]
Maintainer: Pawel Cwiek <prc.altodato@gmail.com>
Diff between pmetar versions 0.4.0 dated 2022-09-04 and 0.4.1 dated 2023-05-07
DESCRIPTION | 8 MD5 | 32 - R/metar_cloud_coverage.R | 48 +- R/metar_decode.R | 2 R/metar_is_correct.R | 4 R/metar_location.R | 91 ++-- R/metar_visibility.R | 39 + README.md | 28 - build/vignette.rds |binary inst/doc/pmetar.R | 8 inst/doc/pmetar.Rmd | 349 ++++++++++------ inst/doc/pmetar.html | 628 ++++++++++++++--------------- man/metar_cloud_coverage.Rd | 1 man/metar_visibility.Rd | 4 tests/testthat/test_metar_cloud_coverage.R | 25 - tests/testthat/test_metar_visibility.R | 99 ++-- vignettes/pmetar.Rmd | 349 ++++++++++------ 17 files changed, 1037 insertions(+), 678 deletions(-)
Title: Genomic Data Retrieval
Description: Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized
way to automate genome, proteome, 'RNA', coding sequence ('CDS'), 'GFF', and metagenome
retrieval from 'NCBI RefSeq', 'NCBI Genbank', 'ENSEMBL',
and 'UniProt' databases. Furthermore, an interface to the 'BioMart' database
(Smedley et al. (2009) <doi:10.1186/1471-2164-10-22>) allows users to retrieve
functional annotation for genomic loci. In addition, users can download entire databases such
as 'NCBI RefSeq' (Pruitt et al. (2007) <doi:10.1093/nar/gkl842>), 'NCBI nr',
'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) <doi:10.1093/nar/gks1195>), etc. with only one command.
Author: Hajk-Georg Drost [aut, cre]
Maintainer: Hajk-Georg Drost <hajk-georg.drost@tuebingen.mpg.de>
Diff between biomartr versions 1.0.2 dated 2022-02-23 and 1.0.3 dated 2023-05-07
DESCRIPTION | 11 MD5 | 38 - R/exists.ftp.file.R | 4 R/get.ensembl.info.R | 20 R/get.ensemblgenome.info.R | 28 R/getENSEMBL.Seq.R | 4 R/getENSEMBL.gtf.R | 2 R/getReleases.R | 40 - R/read_rm.R | 2 README.md | 5 build/vignette.rds |binary inst/CITATION | 5 inst/doc/BioMart_Examples.Rmd | 6 inst/doc/BioMart_Examples.html | 387 +++++++++--- inst/doc/Database_Retrieval.html | 421 ++++++++++--- inst/doc/Functional_Annotation.html | 625 ++++++++++++++++--- inst/doc/MetaGenome_Retrieval.html | 700 +++++++++++++++++----- inst/doc/Sequence_Retrieval.html | 1127 +++++++++++++++++++++++++++++------- man/getReleases.Rd | 8 vignettes/BioMart_Examples.Rmd | 6 20 files changed, 2716 insertions(+), 723 deletions(-)
Title: Multivariate Normal Distribution
Description: Calculates and differentiates probabilities and density of (conditional) multivariate normal distribution and Gaussian copula (with various marginal distributions) using methods described in A. Genz (2004) <doi:10.1023/B:STCO.0000035304.20635.31>, A. Genz, F. Bretz (2009) <doi:10.1007/978-3-642-01689-9> and E. Kossova, B. Potanin (2018) <https:ideas.repec.org/a/ris/apltrx/0346.html>.
Author: Bogdan Potanin [aut, cre, ctb]
Maintainer: Bogdan Potanin <bogdanpotanin@gmail.com>
Diff between mnorm versions 1.1.0 dated 2023-01-15 and 1.1.1 dated 2023-05-07
DESCRIPTION | 12 ++++++------ MD5 | 26 +++++++++++++------------- inst/include/mnorm_RcppExports.h | 8 ++++---- src/Makevars | 1 - src/Makevars.win | 1 - src/RcppExports.cpp | 14 +++++++------- src/cmnorm.cpp | 1 + src/dmnorm.cpp | 12 ++++++++---- src/dmnorm.h | 2 +- src/halton.cpp | 1 + src/pmnorm.cpp | 36 ++++++++++++++++++++---------------- src/pmnorm.h | 4 ++-- src/qmnorm.cpp | 1 + src/rmnorm.cpp | 1 + 14 files changed, 65 insertions(+), 55 deletions(-)
Title: Build a Metric Subspaces Data Model for a Data Source
Description: Neural networks are applied to create a density value function which approximates density values for a data source. The trained neural network is analyzed for different levels. For each level metric subspaces with density values above a level are determined. The obtained set of metric subspaces and the trained neural network are assembled into a data model. A prerequisite is the definition of a data source, the generation of generative data and the calculation of density values. These tasks are executed using package 'ganGenerativeData' <https://cran.r-project.org/package=ganGenerativeData>.
Author: Werner Mueller
Maintainer: Werner Mueller <werner.mueller5@chello.at>
Diff between ganDataModel versions 1.1.3 dated 2023-04-02 and 1.1.4 dated 2023-05-07
ganDataModel-1.1.3/ganDataModel/src/CopyOfvolumeElementGraph.h |only ganDataModel-1.1.4/ganDataModel/DESCRIPTION | 8 ++++---- ganDataModel-1.1.4/ganDataModel/MD5 | 7 +++---- ganDataModel-1.1.4/ganDataModel/man/ganDataModel-package.Rd | 2 +- ganDataModel-1.1.4/ganDataModel/src/Makevars | 4 ---- 5 files changed, 8 insertions(+), 13 deletions(-)
Title: Retrieve and Analyze Clinical Trials in Public Registers
Description: A system for querying, retrieving and analyzing
protocol- and results-related information on clinical trials from
four public registers, the 'European Union Clinical Trials Register'
('EUCTR', <https://www.clinicaltrialsregister.eu/>),
'ClinicalTrials.gov' ('CTGOV', <https://clinicaltrials.gov/>),
the 'ISRCTN' (<http://www.isrctn.com/>) and the
'European Union Clinical Trials Information System'
('CTIS', <https://euclinicaltrials.eu/>).
Trial information is downloaded, converted and stored in a database
('PostgreSQL', 'SQLite', 'DuckDB' or 'MongoDB'; via package 'nodbi').
Documents in registers associated with trials can also be downloaded.
Functions can identify deduplicated records,
easily find and extract variables (fields) of interest even
from complex nesting as used by the registers, and
to update queries.
The package can be used for meta-analysis and trend-analysis of
the design and conduct as well as of the results of clinical trials.
Author: Ralf Herold [aut, cre]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between ctrdata versions 1.13.0 dated 2023-04-24 and 1.13.1 dated 2023-05-07
DESCRIPTION | 17 LICENSE | 2 MD5 | 72 +- NAMESPACE | 7 NEWS.md | 6 R/ctrdata-package.R | 17 R/ctrdata-registers.R | 2 R/main.R | 809 +++++++++++++++++++------ R/onload.R | 1 R/utils.R | 97 +- README.md | 204 +++--- inst/doc/ctrdata_install.pdf |binary inst/doc/ctrdata_retrieve.pdf |binary inst/doc/ctrdata_summarise.pdf |binary inst/tinytest/ctrdata_ctgov.R | 16 inst/tinytest/ctrdata_ctis.R | 23 inst/tinytest/ctrdata_euctr.R | 29 inst/tinytest/more_test_ctrdata_param_checks.R | 6 inst/tinytest/setup_ctrdata.R | 8 inst/tinytest/test_ctrdata_other_functions.R | 2 man/ctrDb.Rd | 4 man/ctrGetQueryUrl.Rd | 2 man/ctrLoadQueryIntoDb.Rd | 46 - man/ctrdata-package.Rd | 17 man/ctrdata-registers.Rd | 2 man/dbFindFields.Rd | 18 man/dbFindIdsUniqueTrials.Rd | 2 man/dbGetFieldsIntoDf.Rd | 2 man/dbQueryHistory.Rd | 2 man/dfFindUniqueEuctrRecord.Rd | 2 vignettes/boxpep.png |binary vignettes/ctrdata_install.Rmd | 10 vignettes/ctrdata_retrieve.Rmd | 103 ++- vignettes/ctrdata_summarise.Rmd | 325 ++++++---- vignettes/nb1.png |binary vignettes/nb2.png |binary vignettes/nbtrials.png |binary 37 files changed, 1270 insertions(+), 583 deletions(-)
Title: Estimate Incidence and Prevalence using the OMOP Common Data
Model
Description: Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.
Author: Edward Burn [aut, cre] ,
Berta Raventos [aut] ,
Marti Catala [aut] ,
Mike Du [ctb] ,
Yuchen Guo [ctb] ,
Adam Black [ctb] ,
Ger Inberg [ctb] ,
Kim Lopez [ctb]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between IncidencePrevalence versions 0.2.1 dated 2023-04-12 and 0.3.0 dated 2023-05-07
IncidencePrevalence-0.2.1/IncidencePrevalence/R/gatherIncidencePrevalenceResults.R |only IncidencePrevalence-0.2.1/IncidencePrevalence/man/gatherIncidencePrevalenceResults.Rd |only IncidencePrevalence-0.2.1/IncidencePrevalence/tests/testthat/test-gatherIncidencePrevalenceResults.R |only IncidencePrevalence-0.3.0/IncidencePrevalence/DESCRIPTION | 20 IncidencePrevalence-0.3.0/IncidencePrevalence/MD5 | 111 IncidencePrevalence-0.3.0/IncidencePrevalence/NAMESPACE | 5 IncidencePrevalence-0.3.0/IncidencePrevalence/R/benchmarkIncidencePrevalence.R | 98 IncidencePrevalence-0.3.0/IncidencePrevalence/R/bindEstimates.R |only IncidencePrevalence-0.3.0/IncidencePrevalence/R/estimateIncidence.R | 107 IncidencePrevalence-0.3.0/IncidencePrevalence/R/estimatePrevalence.R | 126 IncidencePrevalence-0.3.0/IncidencePrevalence/R/exportIncidencePrevalenceResults.R | 183 IncidencePrevalence-0.3.0/IncidencePrevalence/R/generateDenominatorCohortSet.R | 954 - IncidencePrevalence-0.3.0/IncidencePrevalence/R/getDenominatorCohorts.R | 22 IncidencePrevalence-0.3.0/IncidencePrevalence/R/getIncidence.R | 705 - IncidencePrevalence-0.3.0/IncidencePrevalence/R/getPrevalence.R | 4 IncidencePrevalence-0.3.0/IncidencePrevalence/R/inputValidation.R | 115 IncidencePrevalence-0.3.0/IncidencePrevalence/R/mockIncidencePrevalenceRef.R | 3 IncidencePrevalence-0.3.0/IncidencePrevalence/R/plotting.R |only IncidencePrevalence-0.3.0/IncidencePrevalence/R/utils.R | 433 IncidencePrevalence-0.3.0/IncidencePrevalence/README.md | 220 IncidencePrevalence-0.3.0/IncidencePrevalence/inst/doc/a01_Introduction_to_IncidencePrevalence.R | 25 IncidencePrevalence-0.3.0/IncidencePrevalence/inst/doc/a01_Introduction_to_IncidencePrevalence.Rmd | 27 IncidencePrevalence-0.3.0/IncidencePrevalence/inst/doc/a01_Introduction_to_IncidencePrevalence.html | 174 IncidencePrevalence-0.3.0/IncidencePrevalence/inst/doc/a02_Creating_denominator_populations.R | 60 IncidencePrevalence-0.3.0/IncidencePrevalence/inst/doc/a02_Creating_denominator_populations.Rmd | 60 IncidencePrevalence-0.3.0/IncidencePrevalence/inst/doc/a02_Creating_denominator_populations.html | 797 - IncidencePrevalence-0.3.0/IncidencePrevalence/inst/doc/a04_Calculating_prevalence.R | 140 IncidencePrevalence-0.3.0/IncidencePrevalence/inst/doc/a04_Calculating_prevalence.Rmd | 144 IncidencePrevalence-0.3.0/IncidencePrevalence/inst/doc/a04_Calculating_prevalence.html | 618 IncidencePrevalence-0.3.0/IncidencePrevalence/inst/doc/a05_Calculating_incidence.R | 65 IncidencePrevalence-0.3.0/IncidencePrevalence/inst/doc/a05_Calculating_incidence.Rmd | 491 IncidencePrevalence-0.3.0/IncidencePrevalence/inst/doc/a05_Calculating_incidence.html | 354 IncidencePrevalence-0.3.0/IncidencePrevalence/man/benchmarkIncidencePrevalence.Rd | 45 IncidencePrevalence-0.3.0/IncidencePrevalence/man/bindIncidenceEstimates.Rd |only IncidencePrevalence-0.3.0/IncidencePrevalence/man/bindPrevalenceEstimates.Rd |only IncidencePrevalence-0.3.0/IncidencePrevalence/man/estimateIncidence.Rd | 24 IncidencePrevalence-0.3.0/IncidencePrevalence/man/estimatePeriodPrevalence.Rd | 24 IncidencePrevalence-0.3.0/IncidencePrevalence/man/estimatePointPrevalence.Rd | 25 IncidencePrevalence-0.3.0/IncidencePrevalence/man/exportIncidencePrevalenceResults.Rd | 17 IncidencePrevalence-0.3.0/IncidencePrevalence/man/generateDenominatorCohortSet.Rd | 48 IncidencePrevalence-0.3.0/IncidencePrevalence/man/incidenceAttrition.Rd | 2 IncidencePrevalence-0.3.0/IncidencePrevalence/man/incidenceSet.Rd | 2 IncidencePrevalence-0.3.0/IncidencePrevalence/man/participants.Rd | 2 IncidencePrevalence-0.3.0/IncidencePrevalence/man/plotIncidence.Rd |only IncidencePrevalence-0.3.0/IncidencePrevalence/man/plotPrevalence.Rd |only IncidencePrevalence-0.3.0/IncidencePrevalence/man/prevalenceAttrition.Rd | 2 IncidencePrevalence-0.3.0/IncidencePrevalence/man/prevalenceSet.Rd | 2 IncidencePrevalence-0.3.0/IncidencePrevalence/tests/manual/test-dbms.R | 187 IncidencePrevalence-0.3.0/IncidencePrevalence/tests/manual/test-eunomia.R | 170 IncidencePrevalence-0.3.0/IncidencePrevalence/tests/testthat/test-benchmarkIncidencePrevalence.R | 43 IncidencePrevalence-0.3.0/IncidencePrevalence/tests/testthat/test-bindEstimates.R |only IncidencePrevalence-0.3.0/IncidencePrevalence/tests/testthat/test-estimateIncidence.R | 6285 +++++----- IncidencePrevalence-0.3.0/IncidencePrevalence/tests/testthat/test-estimatePrevalence.R | 2776 ++-- IncidencePrevalence-0.3.0/IncidencePrevalence/tests/testthat/test-exportIncidencePrevalenceResults.R | 22 IncidencePrevalence-0.3.0/IncidencePrevalence/tests/testthat/test-generateDenominatorCohortSet.R | 2803 ++-- IncidencePrevalence-0.3.0/IncidencePrevalence/tests/testthat/test-getStudyDays.R | 522 IncidencePrevalence-0.3.0/IncidencePrevalence/tests/testthat/test-obscureCounts.R | 138 IncidencePrevalence-0.3.0/IncidencePrevalence/tests/testthat/test-plotting.R |only IncidencePrevalence-0.3.0/IncidencePrevalence/vignettes/a01_Introduction_to_IncidencePrevalence.Rmd | 27 IncidencePrevalence-0.3.0/IncidencePrevalence/vignettes/a02_Creating_denominator_populations.Rmd | 60 IncidencePrevalence-0.3.0/IncidencePrevalence/vignettes/a04_Calculating_prevalence.Rmd | 144 IncidencePrevalence-0.3.0/IncidencePrevalence/vignettes/a05_Calculating_incidence.Rmd | 491 62 files changed, 9912 insertions(+), 10010 deletions(-)
More information about IncidencePrevalence at CRAN
Permanent link
Title: Distributions Hermite Polynomial Approximation
Description: Multivariate conditional and marginal densities, moments, cumulative distribution functions as well as binary choice and sample selection models based on Hermite polynomial approximation which was proposed and described by A. Gallant and D. W. Nychka (1987) <doi:10.2307/1913241>.
Author: Potanin Bogdan
Maintainer: Potanin Bogdan <bogdanpotanin@gmail.com>
Diff between hpa versions 1.3.0 dated 2022-11-16 and 1.3.1 dated 2023-05-07
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- src/Makevars | 33 ++++++++++++++++++++++++++++++++- src/Makevars.win | 4 +++- src/hpa0.cpp | 1 + src/hpaBinary.cpp | 1 + src/hpaMain.cpp | 1 + src/hpaSelection.cpp | 2 +- src/normalMoments.cpp | 1 + src/polynomialIndex.cpp | 1 + src/spline.cpp | 1 + 11 files changed, 57 insertions(+), 18 deletions(-)
Title: Tools for Comparing Text Messages Across Time and Media
Description: A collection of tools for measuring the similarity of text messages and tracing the flow of messages over
time and across media.
Author: Kasper Welbers & Wouter van Atteveldt
Maintainer: Kasper Welbers <kasperwelbers@gmail.com>
Diff between RNewsflow versions 1.2.6 dated 2021-04-07 and 1.2.7 dated 2023-05-07
RNewsflow-1.2.6/RNewsflow/R/deprecated.r |only RNewsflow-1.2.6/RNewsflow/man/delete.duplicates.Rd |only RNewsflow-1.2.6/RNewsflow/man/directed.network.plot.Rd |only RNewsflow-1.2.6/RNewsflow/man/document.network.Rd |only RNewsflow-1.2.6/RNewsflow/man/document.network.plot.Rd |only RNewsflow-1.2.6/RNewsflow/man/documents.compare.Rd |only RNewsflow-1.2.6/RNewsflow/man/filter.window.Rd |only RNewsflow-1.2.6/RNewsflow/man/network.aggregate.Rd |only RNewsflow-1.2.6/RNewsflow/man/newsflow.compare.Rd |only RNewsflow-1.2.6/RNewsflow/man/only.first.match.Rd |only RNewsflow-1.2.6/RNewsflow/man/show.window.Rd |only RNewsflow-1.2.6/RNewsflow/man/term.day.dist.Rd |only RNewsflow-1.2.7/RNewsflow/DESCRIPTION | 21 RNewsflow-1.2.7/RNewsflow/MD5 | 82 RNewsflow-1.2.7/RNewsflow/NAMESPACE | 13 RNewsflow-1.2.7/RNewsflow/R/compare_documents.r | 15 RNewsflow-1.2.7/RNewsflow/R/cp_sensitive_lookup.r | 6 RNewsflow-1.2.7/RNewsflow/R/crossprod.r | 21 RNewsflow-1.2.7/RNewsflow/R/data.r | 2 RNewsflow-1.2.7/RNewsflow/R/dtm_functions.r | 4 RNewsflow-1.2.7/RNewsflow/R/feature_preparation.r | 60 RNewsflow-1.2.7/RNewsflow/R/global_imports.r | 2 RNewsflow-1.2.7/RNewsflow/R/math.r | 10 RNewsflow-1.2.7/RNewsflow/R/networks.r | 14 RNewsflow-1.2.7/RNewsflow/R/window_comparison.r | 4 RNewsflow-1.2.7/RNewsflow/build/vignette.rds |binary RNewsflow-1.2.7/RNewsflow/inst/doc/RNewsflow.R | 7 RNewsflow-1.2.7/RNewsflow/inst/doc/RNewsflow.Rmd | 19 RNewsflow-1.2.7/RNewsflow/inst/doc/RNewsflow.html | 1404 ++++------ RNewsflow-1.2.7/RNewsflow/man/compare_documents.Rd | 2 RNewsflow-1.2.7/RNewsflow/man/create_document_network.Rd | 2 RNewsflow-1.2.7/RNewsflow/man/create_queries.Rd | 2 RNewsflow-1.2.7/RNewsflow/man/docnet.Rd | 2 RNewsflow-1.2.7/RNewsflow/man/document_network_plot.Rd | 2 RNewsflow-1.2.7/RNewsflow/man/filter_window.Rd | 4 RNewsflow-1.2.7/RNewsflow/man/only_first_match.Rd | 2 RNewsflow-1.2.7/RNewsflow/man/show_window.Rd | 4 RNewsflow-1.2.7/RNewsflow/man/tcrossprod_sparse.Rd | 10 RNewsflow-1.2.7/RNewsflow/man/term_char_sim.Rd | 2 RNewsflow-1.2.7/RNewsflow/man/term_innovation.Rd | 4 RNewsflow-1.2.7/RNewsflow/man/term_intersect.Rd | 6 RNewsflow-1.2.7/RNewsflow/man/term_union.Rd | 8 RNewsflow-1.2.7/RNewsflow/src/RcppExports.cpp | 5 RNewsflow-1.2.7/RNewsflow/tests/testthat/test_calculating_similarities.r | 13 RNewsflow-1.2.7/RNewsflow/tests/testthat/test_lookup_cooc.r | 3 RNewsflow-1.2.7/RNewsflow/tests/testthat/test_newsflow.r | 3 RNewsflow-1.2.7/RNewsflow/vignettes/RNewsflow.Rmd | 19 RNewsflow-1.2.7/RNewsflow/vignettes/references.bib | 1 48 files changed, 849 insertions(+), 929 deletions(-)
Title: Create Actuarial Experience Studies: Prepare Data, Summarize
Results, and Create Reports
Description: Experience studies are used by actuaries to explore historical
experience across blocks of business and to inform assumption setting
activities. This package provides functions for preparing data, creating
studies, and beginning assumption development. Experience study methods,
including exposure calculations, are described in: Atkinson & McGarry
(2016) "Experience Study Calculations"
<https://www.soa.org/49378a/globalassets/assets/files/research/experience-study-calculations.pdf>.
The limited fluctuation credibility method used by the 'exp_stats()'
function is described in: Herzog (1999, ISBN:1-56698-374-6)
"Introduction to Credibility Theory".
Author: Matt Heaphy [aut, cre]
Maintainer: Matt Heaphy <mattrmattrs@gmail.com>
Diff between actxps versions 1.0.1 dated 2023-04-11 and 1.1.0 dated 2023-05-07
DESCRIPTION | 12 - MD5 | 35 ++- NAMESPACE | 1 NEWS.md | 127 +++++++------- R/add_predictions.R |only R/exp_shiny.R | 3 R/exp_stats.R | 12 - R/exposed_df_helpers.R | 10 - R/tables.R | 14 - R/transactions.R | 10 - R/trx_stats.R | 15 - inst/doc/actxps.html | 120 ++++++------- inst/doc/exp_summary.html | 169 +++++++++--------- inst/doc/exposures.html | 304 +++++++++++++++++----------------- inst/doc/transactions.html | 208 ++++++++++------------- man/add_predictions.Rd |only man/autotable.Rd | 3 man/is_exposed_df.Rd | 6 tests/testthat/test-add_predictions.R |only tests/testthat/test-plots.R | 6 20 files changed, 521 insertions(+), 534 deletions(-)
Title: Factor and Autoregressive Models for Tensor Time Series
Description: Factor and autoregressive models for matrix and tensor valued time series. We provide functions for estimation, simulation and prediction. The models are discussed in
Li et al (2021) <arXiv:2110.00928>, Chen et al (2020) <DOI:10.1080/01621459.2021.1912757>,
Chen et al (2020) <DOI:10.1016/j.jeconom.2020.07.015>, and Xiao et al (2020) <arXiv:2006.02611>.
Author: Zebang Li [aut, cre],
Ruofan Yu [aut],
Rong Chen [aut],
Yuefeng Han [aut],
Han Xiao [aut],
Dan Yang [aut]
Maintainer: Zebang Li <zl326@stat.rutgers.edu>
Diff between tensorTS versions 1.0.0 dated 2022-05-08 and 1.0.1 dated 2023-05-07
tensorTS-1.0.0/tensorTS/NEWS.md |only tensorTS-1.0.0/tensorTS/man/tenAR.predict.Rd |only tensorTS-1.0.1/tensorTS/DESCRIPTION | 12 tensorTS-1.0.1/tensorTS/MD5 | 27 - tensorTS-1.0.1/tensorTS/NAMESPACE | 52 +- tensorTS-1.0.1/tensorTS/R/helper.R | 79 ++-- tensorTS-1.0.1/tensorTS/R/tenAR.R | 494 +++++++++++++++++++-------- tensorTS-1.0.1/tensorTS/R/tenFM.R | 100 +++++ tensorTS-1.0.1/tensorTS/man/matAR.RR.est.Rd | 144 +++---- tensorTS-1.0.1/tensorTS/man/matAR.RR.se.Rd | 94 ++--- tensorTS-1.0.1/tensorTS/man/mplot.Rd | 44 +- tensorTS-1.0.1/tensorTS/man/predict.tenAR.Rd |only tensorTS-1.0.1/tensorTS/man/taxi.sim.AR.Rd |only tensorTS-1.0.1/tensorTS/man/taxi.sim.FM.Rd |only tensorTS-1.0.1/tensorTS/man/tenAR.est.Rd | 182 ++++----- tensorTS-1.0.1/tensorTS/man/tenFM.rank.Rd | 180 ++++----- tensorTS-1.0.1/tensorTS/man/tenFM.sim.Rd | 98 ++--- 17 files changed, 910 insertions(+), 596 deletions(-)
Title: Progress Bar for Parallel Tasks
Description: A simple interface in the form of R6 classes for executing tasks in
parallel, tracking their progress, and displaying accurate progress bars.
Author: Mihai Constantin [aut, cre]
Maintainer: Mihai Constantin <mihai@mihaiconstantin.com>
Diff between parabar versions 1.0.3 dated 2023-04-24 and 1.1.0 dated 2023-05-07
DESCRIPTION | 8 MD5 | 72 +- NAMESPACE | 4 NEWS.md | 57 + R/AsyncBackend.R | 107 +++ R/Context.R | 62 +- R/Exception.R | 41 + R/Helper.R | 33 - R/Options.R | 2 R/ProgressTrackingContext.R | 159 ++++- R/Service.R | 57 + R/SyncBackend.R | 77 ++ R/UserApiConsumer.R |only R/exports.r | 98 --- R/parabar-package.R | 2 README.md | 12 man/AsyncBackend.Rd | 71 ++ man/Backend.Rd | 2 man/Context.Rd | 73 ++ man/Exception.Rd | 9 man/Helper.Rd | 10 man/ProgressTrackingContext.Rd | 66 ++ man/Service.Rd | 71 ++ man/SyncBackend.Rd | 82 ++ man/UserApiConsumer.Rd |only man/clear.Rd | 3 man/evaluate.Rd | 3 man/export.Rd | 3 man/par_apply.Rd |only man/par_lapply.Rd |only man/par_sapply.Rd | 28 man/parabar-package.Rd | 27 man/peek.Rd | 3 man/start_backend.Rd | 3 man/stop_backend.Rd | 3 tests/testthat/helpers.R | 734 ++++++++++++++++++++---- tests/testthat/test-async-backend.R | 3 tests/testthat/test-progress-tracking-context.R | 149 +++- tests/testthat/test-user-api.R | 197 ++---- 39 files changed, 1811 insertions(+), 520 deletions(-)
Title: S3 Resource Resolver
Description: A S3 resource is provided by Amazon Web Services S3 or a S3-compatible object store (such as Minio).
The resource can be a tidy file to be downloaded from the object store, or a data lake (such as Delta Lake)
Parquet file to be read by Apache Spark.
Author: Yannick Marcon [aut, cre] ,
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between s3.resourcer versions 1.1.0 dated 2022-08-19 and 1.1.1 dated 2023-05-07
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/S3SparkResourceConnector.R | 17 +++++++++++++---- 3 files changed, 19 insertions(+), 10 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-30 1.0.4
2022-09-14 1.0.3
2022-06-23 1.0.2
2022-03-11 1.0.1
2022-01-10 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-05 3.4.1
2022-11-19 3.4.0
2021-07-23 3.3.5
2020-04-11 3.3.0
2018-12-19 3.1.0
2018-11-06 3.0.0.1
2018-08-22 3.0.0
2017-07-17 2.2.1
2016-11-23 2.2.0
2016-07-21 2.1.4
2016-07-15 2.1.3
2016-07-05 2.1.2
2016-03-31 2.1.1
2016-03-18 2.1.0
2016-01-16 2.0.1
2015-10-12 1.0.6.1
2015-08-03 1.0.6.0
2015-04-15 1.0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-19 3.1.3
2022-04-15 3.1.2
2021-02-26 3.1.0
2020-09-12 3.0.0
2020-07-19 2.2.0
2020-05-10 2.0.0
2019-09-08 1.0.2
2019-02-20 1.0.1
2019-01-30 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-28 1.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-05 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-01 0.2.2
2019-07-02 0.2.1
2018-08-19 0.2.0
2018-07-05 0.1.0
Title: The Sparse Online Principal Component Estimation Algorithm
Description: The sparse online principal component can not only process the online data set, but also obtain a sparse solution of the online data set. The philosophy of the package is described in Guo G. (2022) <doi:10.1007/s00180-022-01270-z>.
Author: Guangbao Guo [aut, cre],
Chunjie Wei [aut],
Guoqi Qian [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between SOPC versions 0.0.4 dated 2022-08-29 and 0.1.0 dated 2023-05-07
DESCRIPTION | 14 +++++++------- INDEX |only LICENSE | 4 ++-- MD5 | 17 ++++++++++------- NAMESPACE | 26 +++++++++++--------------- R/SOPC.R | 42 ++++++++++++++++++++++-------------------- R/SPC.R | 12 +++++++----- R/utils-pipe.R |only man/SOPC.Rd | 3 ++- man/SPC.Rd | 1 + man/pipe.Rd |only 11 files changed, 62 insertions(+), 57 deletions(-)
Title: Enhance Reproducibility of R Code
Description: A collection of high-level, machine- and OS-independent tools
for making deeply reproducible and reusable content in R.
The two workhorse functions are Cache() and prepInputs(). Cache()
allows for nested caching, is robust to environments and objects with
environments (like functions), and has deals with some classes of
file-backed R objects e.g., from terra and raster packages.
Both functions have been developed to
be foundational components of data retrieval
and processing in continuous workflow situations. In both functions,
efforts are made to make the first and subsequent calls of functions have
the same result, but faster at subsequent times by way of checksums
and digesting. Several features are still under development, including
cloud storage of cached objects, allowing for sharing between users. Several
advanced options are available, see ?reproducibleOptions().
Author: Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [aut] ,
Tati Micheletti [ctb] ,
Ceres Barros [ctb] ,
Ian Eddy [ctb] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between reproducible versions 1.2.16 dated 2022-12-22 and 2.0.2 dated 2023-05-07
reproducible-1.2.16/reproducible/R/cloudOld.R |only reproducible-1.2.16/reproducible/R/git.R |only reproducible-1.2.16/reproducible/R/postProcessTerra.R |only reproducible-1.2.16/reproducible/inst/examples/example_assessDataTypeGDAL.R |only reproducible-1.2.16/reproducible/man/Deprcated.Rd |only reproducible-1.2.16/reproducible/man/checkForAuxiliaryFiles.Rd |only reproducible-1.2.16/reproducible/man/checkGitConfig.Rd |only reproducible-1.2.16/reproducible/man/checkoutVersion.Rd |only reproducible-1.2.16/reproducible/man/clearStubArtifacts.Rd |only reproducible-1.2.16/reproducible/man/cloudCheckOld.Rd |only reproducible-1.2.16/reproducible/man/cloudSyncCacheOld.Rd |only reproducible-1.2.16/reproducible/man/cloudUpload.Rd |only reproducible-1.2.16/reproducible/man/cloudWriteOld.Rd |only reproducible-1.2.16/reproducible/man/cropInputs.Rd |only reproducible-1.2.16/reproducible/man/fixErrors.Rd |only reproducible-1.2.16/reproducible/man/fixErrorsTerra.Rd |only reproducible-1.2.16/reproducible/man/getFunctionName.Rd |only reproducible-1.2.16/reproducible/man/maskInputs.Rd |only reproducible-1.2.16/reproducible/man/messageDF.Rd |only reproducible-1.2.16/reproducible/man/pipe.Rd |only reproducible-1.2.16/reproducible/man/postProcessHelpers.Rd |only reproducible-1.2.16/reproducible/man/postProcessTerra.Rd |only reproducible-1.2.16/reproducible/man/projectInputs.Rd |only reproducible-1.2.16/reproducible/man/spatialClasses-class.Rd |only reproducible-1.2.16/reproducible/man/writeOutputs.Rd |only reproducible-2.0.2/reproducible/DESCRIPTION | 42 reproducible-2.0.2/reproducible/MD5 | 237 - reproducible-2.0.2/reproducible/NAMESPACE | 131 reproducible-2.0.2/reproducible/NEWS.md | 57 reproducible-2.0.2/reproducible/R/DBI.R | 653 ++ reproducible-2.0.2/reproducible/R/cache-helpers.R | 656 -- reproducible-2.0.2/reproducible/R/cache-internals.R | 203 reproducible-2.0.2/reproducible/R/cache.R | 733 +-- reproducible-2.0.2/reproducible/R/cacheGeo.R |only reproducible-2.0.2/reproducible/R/checksums.R | 102 reproducible-2.0.2/reproducible/R/cloud.R | 272 - reproducible-2.0.2/reproducible/R/convertPaths.R | 91 reproducible-2.0.2/reproducible/R/copy.R | 111 reproducible-2.0.2/reproducible/R/download.R | 297 - reproducible-2.0.2/reproducible/R/exportedMethods.R | 375 + reproducible-2.0.2/reproducible/R/gis.R | 71 reproducible-2.0.2/reproducible/R/helpers.R | 331 + reproducible-2.0.2/reproducible/R/messages.R |only reproducible-2.0.2/reproducible/R/objectSize.R | 17 reproducible-2.0.2/reproducible/R/options.R | 19 reproducible-2.0.2/reproducible/R/paths.R | 5 reproducible-2.0.2/reproducible/R/pipe.R | 51 reproducible-2.0.2/reproducible/R/postProcess.R | 1980 --------- reproducible-2.0.2/reproducible/R/postProcessTo.R |only reproducible-2.0.2/reproducible/R/preProcess.R | 947 ++-- reproducible-2.0.2/reproducible/R/prepInputs.R | 881 +--- reproducible-2.0.2/reproducible/R/reproducible-deprecated.R | 55 reproducible-2.0.2/reproducible/R/robustDigest.R | 243 - reproducible-2.0.2/reproducible/R/showCacheEtc.R | 231 - reproducible-2.0.2/reproducible/R/spatialObjects-class.R | 31 reproducible-2.0.2/reproducible/R/terra-migration.R |only reproducible-2.0.2/reproducible/R/zzz.R | 18 reproducible-2.0.2/reproducible/build/vignette.rds |binary reproducible-2.0.2/reproducible/inst/CITATION |only reproducible-2.0.2/reproducible/inst/WORDLIST | 48 reproducible-2.0.2/reproducible/inst/doc/Intro-to-Cache.R | 82 reproducible-2.0.2/reproducible/inst/doc/Intro-to-Cache.Rmd | 93 reproducible-2.0.2/reproducible/inst/doc/Intro-to-Cache.html | 2197 ++++------ reproducible-2.0.2/reproducible/inst/ex |only reproducible-2.0.2/reproducible/inst/examples/example_assessDataType.R | 49 reproducible-2.0.2/reproducible/inst/examples/example_postProcess.R | 110 reproducible-2.0.2/reproducible/man/Cache.Rd | 15 reproducible-2.0.2/reproducible/man/CacheDigest.Rd | 5 reproducible-2.0.2/reproducible/man/CacheGeo.Rd |only reproducible-2.0.2/reproducible/man/CacheHelpers.Rd | 49 reproducible-2.0.2/reproducible/man/Copy.Rd | 35 reproducible-2.0.2/reproducible/man/Filenames.Rd | 8 reproducible-2.0.2/reproducible/man/assessDataType.Rd | 68 reproducible-2.0.2/reproducible/man/checkRelative.Rd |only reproducible-2.0.2/reproducible/man/cloudDownload.Rd | 19 reproducible-2.0.2/reproducible/man/cloudUploadFromCache.Rd | 9 reproducible-2.0.2/reproducible/man/convertPaths.Rd | 8 reproducible-2.0.2/reproducible/man/copyFile.Rd | 3 reproducible-2.0.2/reproducible/man/dealWithClass.Rd |only reproducible-2.0.2/reproducible/man/deprecated.Rd |only reproducible-2.0.2/reproducible/man/determineFilename.Rd | 26 reproducible-2.0.2/reproducible/man/dlGoogle.Rd | 13 reproducible-2.0.2/reproducible/man/dot-file.move.Rd | 2 reproducible-2.0.2/reproducible/man/dot-requireNamespace.Rd | 3 reproducible-2.0.2/reproducible/man/downloadFile.Rd | 9 reproducible-2.0.2/reproducible/man/exportedMethods.Rd | 18 reproducible-2.0.2/reproducible/man/fastMask.Rd | 8 reproducible-2.0.2/reproducible/man/fixErrorsIn.Rd |only reproducible-2.0.2/reproducible/man/guessAtTarget.Rd | 6 reproducible-2.0.2/reproducible/man/linkOrCopy.Rd | 37 reproducible-2.0.2/reproducible/man/mergeCache.Rd | 8 reproducible-2.0.2/reproducible/man/messageColoured.Rd |only reproducible-2.0.2/reproducible/man/movedCache.Rd | 23 reproducible-2.0.2/reproducible/man/objSize.Rd | 9 reproducible-2.0.2/reproducible/man/postProcess.Rd | 236 - reproducible-2.0.2/reproducible/man/postProcessTo.Rd |only reproducible-2.0.2/reproducible/man/preProcess.Rd | 18 reproducible-2.0.2/reproducible/man/prepInputs.Rd | 251 - reproducible-2.0.2/reproducible/man/prepareFileBackedRaster.Rd | 10 reproducible-2.0.2/reproducible/man/purge.Rd | 23 reproducible-2.0.2/reproducible/man/rasterRead.Rd |only reproducible-2.0.2/reproducible/man/reproducibleOptions.Rd | 8 reproducible-2.0.2/reproducible/man/robustDigest.Rd | 42 reproducible-2.0.2/reproducible/man/saveToCache.Rd | 10 reproducible-2.0.2/reproducible/man/set.randomseed.Rd |only reproducible-2.0.2/reproducible/man/studyAreaName.Rd | 8 reproducible-2.0.2/reproducible/man/tempdir2.Rd | 3 reproducible-2.0.2/reproducible/man/tempfile2.Rd | 3 reproducible-2.0.2/reproducible/man/terra-migration.Rd |only reproducible-2.0.2/reproducible/man/viewCache.Rd | 21 reproducible-2.0.2/reproducible/man/writeFuture.Rd | 10 reproducible-2.0.2/reproducible/tests/test-all.R | 13 reproducible-2.0.2/reproducible/tests/testthat/helper-allEqual.R | 224 - reproducible-2.0.2/reproducible/tests/testthat/setup.R |only reproducible-2.0.2/reproducible/tests/testthat/test-cache.R | 628 +- reproducible-2.0.2/reproducible/tests/testthat/test-cacheGeo.R |only reproducible-2.0.2/reproducible/tests/testthat/test-cacheHelpers.R | 144 reproducible-2.0.2/reproducible/tests/testthat/test-checkPath.R | 18 reproducible-2.0.2/reproducible/tests/testthat/test-checksums.R | 10 reproducible-2.0.2/reproducible/tests/testthat/test-cloud.R | 463 +- reproducible-2.0.2/reproducible/tests/testthat/test-cluster.R | 86 reproducible-2.0.2/reproducible/tests/testthat/test-copy.R | 22 reproducible-2.0.2/reproducible/tests/testthat/test-devMode.R | 4 reproducible-2.0.2/reproducible/tests/testthat/test-download.R | 12 reproducible-2.0.2/reproducible/tests/testthat/test-examples.R | 6 reproducible-2.0.2/reproducible/tests/testthat/test-filesMissingExtension.R | 21 reproducible-2.0.2/reproducible/tests/testthat/test-gis.R | 13 reproducible-2.0.2/reproducible/tests/testthat/test-misc.R | 127 reproducible-2.0.2/reproducible/tests/testthat/test-multipleCacheRepo.R | 10 reproducible-2.0.2/reproducible/tests/testthat/test-postProcess.R | 374 - reproducible-2.0.2/reproducible/tests/testthat/test-postProcessTerra.R | 309 + reproducible-2.0.2/reproducible/tests/testthat/test-preProcessDoesntWork.R | 62 reproducible-2.0.2/reproducible/tests/testthat/test-preProcessWorks.R | 154 reproducible-2.0.2/reproducible/tests/testthat/test-prepInputs-large-files.R | 79 reproducible-2.0.2/reproducible/tests/testthat/test-prepInputs.R | 1683 +++---- reproducible-2.0.2/reproducible/tests/testthat/test-prepInputsInNestedArchives.R | 33 reproducible-2.0.2/reproducible/tests/testthat/test-reproducibleVerbose.R | 2 reproducible-2.0.2/reproducible/tests/testthat/test-robustDigest.R | 2 reproducible-2.0.2/reproducible/vignettes/Intro-to-Cache.Rmd | 93 139 files changed, 7437 insertions(+), 9598 deletions(-)