Title: Understanding Nonlinear Mixed Effects Modeling for Population
Pharmacokinetics
Description: This shows how NONMEM(R) software works. NONMEM's classical estimation methods like 'First Order(FO) approximation', 'First Order Conditional Estimation(FOCE)', and 'Laplacian approximation' are explained.
Author: Kyun-Seop Bae
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between nmw versions 0.1.4 dated 2018-04-10 and 0.1.5 dated 2023-05-09
DESCRIPTION | 11 +++++------ MD5 | 16 +++++++++++----- R/AddCox.R |only R/CombDmExPc.R |only R/Objs.R | 8 ++++---- R/TrimOut.R |only inst/NEWS.Rd | 9 +++++++++ inst/doc/nmw-manual.pdf |binary man/AddCox.Rd |only man/CombDmExPc.Rd |only man/TrimOut.Rd |only man/nmw-package.Rd | 14 +++++++------- 12 files changed, 36 insertions(+), 22 deletions(-)
Title: Basic and Advanced Statistical Power Analysis
Description: This is a collection of tools for conducting both basic and advanced statistical power analysis including correlation, proportion, t-test, one-way ANOVA, two-way ANOVA, linear regression, logistic regression, Poisson regression, mediation analysis, longitudinal data analysis, structural equation modeling and multilevel modeling. It also serves as the engine for conducting power analysis online at <https://webpower.psychstat.org>.
Author: Zhiyong Zhang [aut, cre],
Yujiao Mai [aut],
Miao Yang [ctb],
Ziqian Xu [ctb],
Conor McNamara [ctb]
Maintainer: Zhiyong Zhang <johnnyzhz@gmail.com>
Diff between WebPower versions 0.9.0 dated 2023-04-20 and 0.9.2 dated 2023-05-09
DESCRIPTION | 8 ++-- MD5 | 22 +++++------ R/model14.R | 45 +++++++++++------------- R/model15.R | 47 +++++++++++++------------ R/model58.R | 94 ++++++++++++++++++++++++--------------------------- R/model7.R | 49 +++++++++++++------------- R/model8.R | 78 +++++++++++++++++++++--------------------- man/wp.modmed.m14.Rd | 20 +++++----- man/wp.modmed.m15.Rd | 23 +++++------- man/wp.modmed.m58.Rd | 41 ++++++++++------------ man/wp.modmed.m7.Rd | 30 ++++++++-------- man/wp.modmed.m8.Rd | 38 ++++++++++---------- 12 files changed, 246 insertions(+), 249 deletions(-)
Title: Tidy Model Visualisation for Generalised Additive Models
Description: Provides functions for visualising generalised
additive models and getting predicted values using tidy tools from the 'tidyverse' packages.
Author: Stefano Coretta [aut, cre],
Jacolien van Rij [cph] ,
Martijn Wieling [cph]
Maintainer: Stefano Coretta <stefano.coretta@gmail.com>
Diff between tidymv versions 3.3.2 dated 2022-09-04 and 3.4.2 dated 2023-05-09
DESCRIPTION | 13 - MD5 | 64 +++--- NAMESPACE | 1 NEWS.md | 7 R/data.R | 14 - R/imported-fun.R | 30 +- R/plotting.R | 56 +++-- R/tidymv-defunct.R | 2 R/tidymv-package.R | 1 R/utils.R | 68 ++++-- R/zzz.R | 7 README.md | 44 ---- build/vignette.rds |binary inst/doc/plot-smooths.html | 275 +++++++++++++------------- inst/doc/predict-gam.html | 348 ++++++++++++++++----------------- man/create_start_event.Rd | 5 man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/find_difference.Rd | 2 man/geom_smooth_ci.Rd | 17 + man/get_difference.Rd | 6 man/get_gam_predictions.Rd | 11 - man/get_smooths_difference.Rd | 9 man/inter_df.Rd | 8 man/plot_difference.Rd | 11 - man/plot_gamsd-defunct.Rd | 4 man/plot_smooths.Rd | 11 - man/pois_df.Rd | 6 man/predict_gam.Rd | 12 - man/summary_data.Rd | 2 man/tidymv-defunct.Rd | 8 37 files changed, 555 insertions(+), 487 deletions(-)
Title: Client Library for SpatioTemporal Asset Catalog
Description: Provides functions to access, search and download spacetime earth
observation data via SpatioTemporal Asset Catalog (STAC). This package
supports the version 1.0.0 (and older) of the STAC specification
(<https://github.com/radiantearth/stac-spec>).
For further details see Simoes et al. (2021) <doi:10.1109/IGARSS47720.2021.9553518>.
Author: Rolf Simoes [aut],
Felipe Carvalho [aut, cre],
Brazil Data Cube Team [aut],
National Institute for Space Research [cph]
Maintainer: Felipe Carvalho <lipecaso@gmail.com>
Diff between rstac versions 0.9.2-2 dated 2023-02-01 and 0.9.2-3 dated 2023-05-09
DESCRIPTION | 6 - MD5 | 22 +-- NEWS.md | 10 + R/items-funs.R | 6 - R/signatures.R | 13 +- README.md | 3 build/partial.rdb |binary build/vignette.rds |binary inst/doc/rstac-01-intro.html | 127 +++++++++------------- inst/doc/rstac-02-cql2.html | 113 ++++++++----------- inst/doc/rstac-03-cql2-mpc.html | 225 +++++++++++++++++---------------------- tests/testthat/test-signatures.R | 16 +- 12 files changed, 252 insertions(+), 289 deletions(-)
Title: Shed Light on Black Box Machine Learning Models
Description: Shed light on black box machine learning models by the help
of model performance, variable importance, global surrogate models,
ICE profiles, partial dependence (Friedman J. H. (2001)
<doi:10.1214/aos/1013203451>), accumulated local effects (Apley D. W.
(2016) <arXiv:1612.08468>), further effects plots, interaction
strength, and variable contribution breakdown (Gosiewska and Biecek
(2019) <arxiv:1903.11420>). All tools are implemented to work with
case weights and allow for stratified analysis. Furthermore, multiple
flashlights can be combined and analyzed together.
Author: Michael Mayer [aut, cre, cph]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between flashlight versions 0.8.0 dated 2021-04-21 and 0.9.0 dated 2023-05-09
flashlight-0.8.0/flashlight/inst/doc/caret.R |only flashlight-0.8.0/flashlight/inst/doc/caret.Rmd |only flashlight-0.8.0/flashlight/inst/doc/caret.html |only flashlight-0.8.0/flashlight/inst/doc/mlr3.R |only flashlight-0.8.0/flashlight/inst/doc/mlr3.Rmd |only flashlight-0.8.0/flashlight/inst/doc/mlr3.html |only flashlight-0.8.0/flashlight/man/ale_profile.Rd |only flashlight-0.8.0/flashlight/man/common_breaks.Rd |only flashlight-0.8.0/flashlight/vignettes/caret.Rmd |only flashlight-0.8.0/flashlight/vignettes/mlr3.Rmd |only flashlight-0.9.0/flashlight/DESCRIPTION | 40 flashlight-0.9.0/flashlight/MD5 | 250 - flashlight-0.9.0/flashlight/NAMESPACE | 280 -- flashlight-0.9.0/flashlight/NEWS.md | 464 +-- flashlight-0.9.0/flashlight/R/add_shap.R | 77 flashlight-0.9.0/flashlight/R/ale_profile.R | 105 flashlight-0.9.0/flashlight/R/all_identical.R | 12 flashlight-0.9.0/flashlight/R/auto_cut.R | 59 flashlight-0.9.0/flashlight/R/common_breaks.R | 10 flashlight-0.9.0/flashlight/R/cut3.R | 41 flashlight-0.9.0/flashlight/R/flashlight.R | 61 flashlight-0.9.0/flashlight/R/grouped_center.R | 37 flashlight-0.9.0/flashlight/R/grouped_counts.R | 21 flashlight-0.9.0/flashlight/R/grouped_stats.R | 54 flashlight-0.9.0/flashlight/R/grouped_weighted_mean.R | 28 flashlight-0.9.0/flashlight/R/is_flashlight.R | 2 flashlight-0.9.0/flashlight/R/light_breakdown.R | 170 - flashlight-0.9.0/flashlight/R/light_check.R | 7 flashlight-0.9.0/flashlight/R/light_combine.R | 52 flashlight-0.9.0/flashlight/R/light_effects.R | 146 - flashlight-0.9.0/flashlight/R/light_global_surrogate.R | 92 flashlight-0.9.0/flashlight/R/light_ice.R | 135 flashlight-0.9.0/flashlight/R/light_importance.R | 151 - flashlight-0.9.0/flashlight/R/light_interaction.R | 175 - flashlight-0.9.0/flashlight/R/light_performance.R | 66 flashlight-0.9.0/flashlight/R/light_profile.R | 215 + flashlight-0.9.0/flashlight/R/light_profile2d.R | 177 - flashlight-0.9.0/flashlight/R/light_recode.R | 41 flashlight-0.9.0/flashlight/R/light_scatter.R | 60 flashlight-0.9.0/flashlight/R/most_important.R | 32 flashlight-0.9.0/flashlight/R/multiflashlight.R | 21 flashlight-0.9.0/flashlight/R/plot_counts.R | 71 flashlight-0.9.0/flashlight/R/plot_light_breakdown.R | 78 flashlight-0.9.0/flashlight/R/plot_light_effects.R | 78 flashlight-0.9.0/flashlight/R/plot_light_global_surrogate.R | 38 flashlight-0.9.0/flashlight/R/plot_light_ice.R | 49 flashlight-0.9.0/flashlight/R/plot_light_importance.R | 122 flashlight-0.9.0/flashlight/R/plot_light_performance.R | 91 flashlight-0.9.0/flashlight/R/plot_light_profile.R | 106 flashlight-0.9.0/flashlight/R/plot_light_profile2d.R | 131 flashlight-0.9.0/flashlight/R/plot_light_scatter.R | 74 flashlight-0.9.0/flashlight/R/predict_flashlight.R | 12 flashlight-0.9.0/flashlight/R/predict_multiflashlight.R | 11 flashlight-0.9.0/flashlight/R/print_flashlight.R | 15 flashlight-0.9.0/flashlight/R/print_light.R | 8 flashlight-0.9.0/flashlight/R/print_multiflashlight.R | 11 flashlight-0.9.0/flashlight/R/residuals_flashlight.R | 18 flashlight-0.9.0/flashlight/R/residuals_multiflashlight.R | 15 flashlight-0.9.0/flashlight/R/response.R | 7 flashlight-0.9.0/flashlight/R/utils.R | 18 flashlight-0.9.0/flashlight/R/zzz.R | 4 flashlight-0.9.0/flashlight/README.md | 237 + flashlight-0.9.0/flashlight/build/vignette.rds |binary flashlight-0.9.0/flashlight/inst/doc/flashlight.R | 447 --- flashlight-0.9.0/flashlight/inst/doc/flashlight.Rmd | 855 +----- flashlight-0.9.0/flashlight/inst/doc/flashlight.html | 1399 +++------- flashlight-0.9.0/flashlight/man/add_shap.Rd | 173 - flashlight-0.9.0/flashlight/man/all_identical.Rd | 56 flashlight-0.9.0/flashlight/man/auto_cut.Rd | 119 flashlight-0.9.0/flashlight/man/cut3.Rd | 101 flashlight-0.9.0/flashlight/man/figures/ale.svg |only flashlight-0.9.0/flashlight/man/figures/breakdown.svg |only flashlight-0.9.0/flashlight/man/figures/cice.svg |only flashlight-0.9.0/flashlight/man/figures/effects.svg |only flashlight-0.9.0/flashlight/man/figures/ice.svg |only flashlight-0.9.0/flashlight/man/figures/imp.svg |only flashlight-0.9.0/flashlight/man/figures/logo.png |binary flashlight-0.9.0/flashlight/man/figures/pdp.svg |only flashlight-0.9.0/flashlight/man/figures/pdp2d.svg |only flashlight-0.9.0/flashlight/man/figures/pdp_grouped.svg |only flashlight-0.9.0/flashlight/man/figures/pdp_grouped_multi.svg |only flashlight-0.9.0/flashlight/man/figures/perf.svg |only flashlight-0.9.0/flashlight/man/figures/perf_grouped.svg |only flashlight-0.9.0/flashlight/man/figures/perf_grouped_multi.svg |only flashlight-0.9.0/flashlight/man/figures/surrogate.svg |only flashlight-0.9.0/flashlight/man/flashlight.Rd | 161 - flashlight-0.9.0/flashlight/man/grouped_center.Rd | 65 flashlight-0.9.0/flashlight/man/grouped_counts.Rd | 62 flashlight-0.9.0/flashlight/man/grouped_stats.Rd | 124 flashlight-0.9.0/flashlight/man/grouped_weighted_mean.Rd | 83 flashlight-0.9.0/flashlight/man/is.flashlight.Rd | 260 - flashlight-0.9.0/flashlight/man/light_breakdown.Rd | 226 - flashlight-0.9.0/flashlight/man/light_check.Rd | 91 flashlight-0.9.0/flashlight/man/light_combine.Rd | 119 flashlight-0.9.0/flashlight/man/light_effects.Rd | 248 - flashlight-0.9.0/flashlight/man/light_global_surrogate.Rd | 166 - flashlight-0.9.0/flashlight/man/light_ice.Rd | 234 - flashlight-0.9.0/flashlight/man/light_importance.Rd | 210 - flashlight-0.9.0/flashlight/man/light_interaction.Rd | 225 - flashlight-0.9.0/flashlight/man/light_performance.Rd | 143 - flashlight-0.9.0/flashlight/man/light_profile.Rd | 321 +- flashlight-0.9.0/flashlight/man/light_profile2d.Rd | 262 + flashlight-0.9.0/flashlight/man/light_recode.Rd | 114 flashlight-0.9.0/flashlight/man/light_scatter.Rd | 167 - flashlight-0.9.0/flashlight/man/most_important.Rd | 86 flashlight-0.9.0/flashlight/man/multiflashlight.Rd | 22 flashlight-0.9.0/flashlight/man/plot.light_breakdown.Rd | 79 flashlight-0.9.0/flashlight/man/plot.light_effects.Rd | 108 flashlight-0.9.0/flashlight/man/plot.light_global_surrogate.Rd | 68 flashlight-0.9.0/flashlight/man/plot.light_ice.Rd | 84 flashlight-0.9.0/flashlight/man/plot.light_importance.Rd | 116 flashlight-0.9.0/flashlight/man/plot.light_performance.Rd | 108 flashlight-0.9.0/flashlight/man/plot.light_profile.Rd | 104 flashlight-0.9.0/flashlight/man/plot.light_profile2d.Rd | 89 flashlight-0.9.0/flashlight/man/plot.light_scatter.Rd | 76 flashlight-0.9.0/flashlight/man/plot_counts.Rd | 114 flashlight-0.9.0/flashlight/man/predict.flashlight.Rd | 52 flashlight-0.9.0/flashlight/man/predict.multiflashlight.Rd | 55 flashlight-0.9.0/flashlight/man/print.flashlight.Rd | 53 flashlight-0.9.0/flashlight/man/print.light.Rd | 49 flashlight-0.9.0/flashlight/man/print.multiflashlight.Rd | 58 flashlight-0.9.0/flashlight/man/residuals.flashlight.Rd | 52 flashlight-0.9.0/flashlight/man/residuals.multiflashlight.Rd | 57 flashlight-0.9.0/flashlight/man/response.Rd | 88 flashlight-0.9.0/flashlight/tests/testthat/tests-breakdown.R | 2 flashlight-0.9.0/flashlight/tests/testthat/tests-cut.R | 2 flashlight-0.9.0/flashlight/tests/testthat/tests-eff.R | 19 flashlight-0.9.0/flashlight/tests/testthat/tests-globaltree.R | 2 flashlight-0.9.0/flashlight/tests/testthat/tests-grouped.R | 3 flashlight-0.9.0/flashlight/tests/testthat/tests-ice.R | 2 flashlight-0.9.0/flashlight/tests/testthat/tests-importance.R | 14 flashlight-0.9.0/flashlight/tests/testthat/tests-interaction.R | 31 flashlight-0.9.0/flashlight/tests/testthat/tests-methods.R | 2 flashlight-0.9.0/flashlight/tests/testthat/tests-perf.R | 151 - flashlight-0.9.0/flashlight/tests/testthat/tests-profile2d.R | 2 flashlight-0.9.0/flashlight/tests/testthat/tests-shap.R | 4 flashlight-0.9.0/flashlight/tests/testthat/tests-utils.R | 2 flashlight-0.9.0/flashlight/vignettes/flashlight.Rmd | 855 +----- 138 files changed, 6376 insertions(+), 6939 deletions(-)
Title: Weighting for Covariate Balance in Observational Studies
Description: Generates balancing weights for causal effect estimation in observational studies with
binary, multi-category, or continuous point or longitudinal treatments by easing and
extending the functionality of several R packages and providing in-house estimation methods.
Available methods include propensity score weighting using generalized linear models, gradient
boosting machines, the covariate balancing propensity score algorithm, Bayesian additive regression trees, and
SuperLearner, and directly estimating balancing weights using entropy balancing, energy balancing, and optimization-based weights. Also
allows for assessment of weights and checking of covariate balance by interfacing directly
with the 'cobalt' package. See the vignette "Installing Supporting Packages" for instructions on how
to install any package 'WeightIt' uses, including those that may not be on CRAN.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between WeightIt versions 0.14.0 dated 2023-04-12 and 0.14.1 dated 2023-05-09
WeightIt-0.14.0/WeightIt/R/cobalt_bal.compute.R |only WeightIt-0.14.1/WeightIt/DESCRIPTION | 12 WeightIt-0.14.1/WeightIt/MD5 | 43 WeightIt-0.14.1/WeightIt/NAMESPACE | 7 WeightIt-0.14.1/WeightIt/NEWS.md | 10 WeightIt-0.14.1/WeightIt/R/SHARED.R | 35 WeightIt-0.14.1/WeightIt/R/as.weightit.R | 81 - WeightIt-0.14.1/WeightIt/R/functions_for_processing.R | 42 WeightIt-0.14.1/WeightIt/R/sbps.R | 18 WeightIt-0.14.1/WeightIt/R/trim.R | 6 WeightIt-0.14.1/WeightIt/R/utilities.R | 4 WeightIt-0.14.1/WeightIt/R/weightit.R | 26 WeightIt-0.14.1/WeightIt/R/weightit.fit.R | 8 WeightIt-0.14.1/WeightIt/R/weightit2method.R | 69 - WeightIt-0.14.1/WeightIt/R/weightitMSM.R | 26 WeightIt-0.14.1/WeightIt/build/WeightIt.pdf |binary WeightIt-0.14.1/WeightIt/inst/doc/WeightIt.html | 6 WeightIt-0.14.1/WeightIt/inst/doc/estimating-effects.R | 128 +- WeightIt-0.14.1/WeightIt/inst/doc/estimating-effects.Rmd | 208 ++- WeightIt-0.14.1/WeightIt/inst/doc/estimating-effects.html | 738 +++++++------ WeightIt-0.14.1/WeightIt/inst/doc/installing-packages.html | 4 WeightIt-0.14.1/WeightIt/vignettes/estimating-effects.Rmd | 208 ++- WeightIt-0.14.1/WeightIt/vignettes/references.bib | 28 23 files changed, 1020 insertions(+), 687 deletions(-)
Title: Connect to Your 'Skilljar' Data
Description: Functions that simplify calls to the 'Skilljar' API. See
<https://api.skilljar.com/docs/> for documentation on the 'Skilljar' API.
This package is not supported by 'Skilljar'.
Author: Chris Umphlett [aut, cre]
Maintainer: Chris Umphlett <christopher.umphlett@gmail.com>
Diff between skilljaR versions 0.0.1 dated 2021-10-18 and 0.1.0 dated 2023-05-09
DESCRIPTION | 10 +++--- MD5 | 14 ++++---- R/get_course_progress.R | 28 +++++++++-------- R/get_published_courses.R | 18 ++++------- R/get_users.R | 69 ++++++++++++++++++++++++------------------- man/get_course_progress.Rd | 4 -- man/get_published_courses.Rd | 4 -- man/get_users.Rd | 21 ++++--------- 8 files changed, 83 insertions(+), 85 deletions(-)
Title: R Bindings for 'ZeroMQ'
Description: Interface to the 'ZeroMQ' lightweight messaging kernel (see <https://zeromq.org/> for more information).
Author: Whit Armstrong [aut],
Michael Schubert [ctb],
Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between rzmq versions 0.9.8 dated 2021-05-04 and 0.9.9 dated 2023-05-09
rzmq-0.9.8/rzmq/src/Makevars.ucrt |only rzmq-0.9.9/rzmq/DESCRIPTION | 8 ++++-- rzmq-0.9.9/rzmq/MD5 | 21 ++++++++---------- rzmq-0.9.9/rzmq/NAMESPACE | 4 ++- rzmq-0.9.9/rzmq/R/rzmq.R | 8 ++++++ rzmq-0.9.9/rzmq/configure | 2 - rzmq-0.9.9/rzmq/man/socket.options.Rd | 5 +++- rzmq-0.9.9/rzmq/src/Makevars.in | 1 rzmq-0.9.9/rzmq/src/Makevars.win | 7 +----- rzmq-0.9.9/rzmq/src/interface.cpp | 39 ++++++++++++++++++++++++++++++++++ rzmq-0.9.9/rzmq/src/interface.h | 3 ++ rzmq-0.9.9/rzmq/tools/winlibs.R | 5 +++- 12 files changed, 79 insertions(+), 24 deletions(-)
Title: Create TLGs using the 'tidyverse'
Description: Generate tables, listings, and graphs (TLG) using 'tidyverse.'
Tables can be created functionally, using a standard TLG process, or by
specifying table and column metadata to create generic analysis summaries.
The 'envsetup' package can also be leveraged to create environments for table
creation.
Author: Nicholas Masel [aut],
Steven Haesendonckx [aut],
Pelagia Alexandra Papadopoulou [aut],
Sheng-Wei Wang [aut],
Eli Miller [aut, cre] ,
Nathan Kosiba [aut] ,
Aidan Ceney [aut] ,
Janssen R&D [cph, fnd],
David Hugh-Jones [cph]
Maintainer: Eli Miller <eli.miller@atorusresearch.com>
Diff between tidytlg versions 0.1.0 dated 2023-05-05 and 0.1.1 dated 2023-05-09
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 6 +++++- inst/doc/tbl_manipulation.html | 10 +++++----- inst/doc/tidytlg.R | 8 +++++--- inst/doc/tidytlg.Rmd | 8 +++++--- inst/doc/tidytlg.html | 14 +++++++------- vignettes/tidytlg.Rmd | 8 +++++--- 8 files changed, 42 insertions(+), 32 deletions(-)
Title: Manage Data from Cardiopulmonary Exercise Testing
Description: Import, process, summarize and visualize raw data from
metabolic carts. See Robergs, Dwyer, and Astorino (2010) <doi:10.2165/11319670-000000000-00000> for more details on data processing.
Author: Simon Nolte [aut, cre] ,
Manuel Ramon [rev] for rOpenSci, see
<https://github.com/ropensci/software-review/issues/541>),
James Hunter [rev] for rOpenSci, see
<https://github.com/ropensci/software-review/issues/541>)
Maintainer: Simon Nolte <s.nolte@dshs-koeln.de>
Diff between spiro versions 0.1.2 dated 2022-11-15 and 0.2.0 dated 2023-05-09
spiro-0.1.2/spiro/R/spiro_import.R |only spiro-0.1.2/spiro/inst/extdata/cortex_test.xml |only spiro-0.1.2/spiro/inst/extdata/cosmed_test.xlsx |only spiro-0.1.2/spiro/inst/extdata/vyntus_test.txt |only spiro-0.1.2/spiro/tests/testthat/_snaps/spiro_import.md |only spiro-0.1.2/spiro/tests/testthat/test-spiro_import.R |only spiro-0.2.0/spiro/DESCRIPTION | 10 spiro-0.2.0/spiro/LICENSE | 2 spiro-0.2.0/spiro/MD5 | 132 ++--- spiro-0.2.0/spiro/NAMESPACE | 3 spiro-0.2.0/spiro/NEWS.md | 29 + spiro-0.2.0/spiro/R/add_bodymass.R | 21 spiro-0.2.0/spiro/R/add_heartrate.R | 21 spiro-0.2.0/spiro/R/add_protocol.R | 38 - spiro-0.2.0/spiro/R/knit_print.R | 3 spiro-0.2.0/spiro/R/spiro-package.R | 12 spiro-0.2.0/spiro/R/spiro.R | 72 +- spiro-0.2.0/spiro/R/spiro_example.R | 5 spiro-0.2.0/spiro/R/spiro_get.R |only spiro-0.2.0/spiro/R/spiro_interpolate.R | 12 spiro-0.2.0/spiro/R/spiro_max.R | 32 - spiro-0.2.0/spiro/R/spiro_plot.R | 389 ++++++++++++---- spiro-0.2.0/spiro/R/spiro_raw.R |only spiro-0.2.0/spiro/R/spiro_smooth.R | 45 - spiro-0.2.0/spiro/R/spiro_summary.R | 16 spiro-0.2.0/spiro/R/utils.R | 62 +- spiro-0.2.0/spiro/README.md | 61 +- spiro-0.2.0/spiro/inst/CITATION | 24 spiro-0.2.0/spiro/inst/WORDLIST | 7 spiro-0.2.0/spiro/inst/doc/import_processing.R | 51 +- spiro-0.2.0/spiro/inst/doc/import_processing.Rmd | 57 +- spiro-0.2.0/spiro/inst/doc/import_processing.html | 226 ++++----- spiro-0.2.0/spiro/inst/doc/summarizing_plotting.R | 17 spiro-0.2.0/spiro/inst/doc/summarizing_plotting.Rmd | 22 spiro-0.2.0/spiro/inst/doc/summarizing_plotting.html | 145 +++-- spiro-0.2.0/spiro/man/add_bodymass.Rd | 17 spiro-0.2.0/spiro/man/add_hr.Rd | 17 spiro-0.2.0/spiro/man/add_protocol.Rd | 4 spiro-0.2.0/spiro/man/bw_filter.Rd | 10 spiro-0.2.0/spiro/man/figures/README-example-1.png |binary spiro-0.2.0/spiro/man/get_anonid.Rd | 6 spiro-0.2.0/spiro/man/get_protocol.Rd | 11 spiro-0.2.0/spiro/man/set_protocol.Rd | 6 spiro-0.2.0/spiro/man/set_protocol_manual.Rd | 5 spiro-0.2.0/spiro/man/spiro-package.Rd | 12 spiro-0.2.0/spiro/man/spiro.Rd | 70 ++ spiro-0.2.0/spiro/man/spiro_example.Rd | 3 spiro-0.2.0/spiro/man/spiro_import.Rd | 38 - spiro-0.2.0/spiro/man/spiro_max.Rd | 26 - spiro-0.2.0/spiro/man/spiro_plot.Rd | 66 ++ spiro-0.2.0/spiro/man/spiro_raw.Rd |only spiro-0.2.0/spiro/man/spiro_smooth.Rd | 14 spiro-0.2.0/spiro/man/spiro_summary.Rd | 14 spiro-0.2.0/spiro/tests/testthat/_snaps/spiro_get.md |only spiro-0.2.0/spiro/tests/testthat/_snaps/spiro_plot |only spiro-0.2.0/spiro/tests/testthat/_snaps/spiro_plot.md | 32 - spiro-0.2.0/spiro/tests/testthat/test-add_hr.R | 2 spiro-0.2.0/spiro/tests/testthat/test-add_protocol.R | 6 spiro-0.2.0/spiro/tests/testthat/test-spiro.R | 4 spiro-0.2.0/spiro/tests/testthat/test-spiro_example.R | 2 spiro-0.2.0/spiro/tests/testthat/test-spiro_get.R |only spiro-0.2.0/spiro/tests/testthat/test-spiro_raw.R |only spiro-0.2.0/spiro/tests/testthat/test-spiro_smooth.R | 4 spiro-0.2.0/spiro/tests/testthat/test-spiro_summary.R | 2 spiro-0.2.0/spiro/tests/testthat/test_spiro_max.R | 2 spiro-0.2.0/spiro/tests/testthat/test_spiro_plot.R | 45 + spiro-0.2.0/spiro/tests/testthat/testdata |only spiro-0.2.0/spiro/vignettes/import_processing.Rmd | 57 +- spiro-0.2.0/spiro/vignettes/summarizing_plotting.Rmd | 22 69 files changed, 1254 insertions(+), 757 deletions(-)
Title: Parse xlsx Files
Description: Uses C++ via the 'Rcpp' package to parse modern Excel files ('.xlsx').
Memory usage is kept minimal by decompressing only parts of the file at a time,
while employing multiple threads to achieve significant runtime reduction.
Uses <https://github.com/richgel999/miniz> and <https://github.com/lemire/fast_double_parser>.
Author: Felix Henze [aut, cre],
Rich Geldreich [ctb, cph] ,
Daniel Lemire [ctb, cph]
Maintainer: Felix Henze <felixhenze0@gmail.com>
Diff between SheetReader versions 1.0.2 dated 2022-04-08 and 1.1.0 dated 2023-05-09
SheetReader-1.0.2/SheetReader/src/XlsxColumn.cpp |only SheetReader-1.0.2/SheetReader/src/XlsxColumn.h |only SheetReader-1.0.2/SheetReader/src/libdeflate |only SheetReader-1.0.2/SheetReader/tests/methods.R |only SheetReader-1.1.0/SheetReader/DESCRIPTION | 13 SheetReader-1.1.0/SheetReader/MD5 | 73 --- SheetReader-1.1.0/SheetReader/R/RcppExports.R | 4 SheetReader-1.1.0/SheetReader/man/read_xlsx.Rd | 22 - SheetReader-1.1.0/SheetReader/src/Makevars | 7 SheetReader-1.1.0/SheetReader/src/RcppExports.cpp | 14 SheetReader-1.1.0/SheetReader/src/XlsxFile.cpp | 166 +------- SheetReader-1.1.0/SheetReader/src/XlsxFile.h | 12 SheetReader-1.1.0/SheetReader/src/XlsxSheet.cpp | 437 +++++++++------------- SheetReader-1.1.0/SheetReader/src/XlsxSheet.h | 47 +- SheetReader-1.1.0/SheetReader/src/interface.cpp | 351 +++++++++++++---- SheetReader-1.1.0/SheetReader/src/parsing.h | 58 +- SheetReader-1.1.0/SheetReader/tests/encoding.R | 1 SheetReader-1.1.0/SheetReader/tests/escape.R | 1 SheetReader-1.1.0/SheetReader/tests/geometry.R | 5 SheetReader-1.1.0/SheetReader/tests/types.R | 1 20 files changed, 574 insertions(+), 638 deletions(-)
Title: SHAP Visualizations
Description: Visualizations for SHAP (SHapley Additive exPlanations), such
as waterfall plots, force plots, various types of importance plots,
dependence plots, and interaction plots. These plots act on a
'shapviz' object created from a matrix of SHAP values and a
corresponding feature dataset. Wrappers for the R packages 'xgboost',
'lightgbm', 'fastshap', 'shapr', 'h2o', 'treeshap', 'DALEX', and
'kernelshap' are added for convenience. By separating visualization
and computation, it is possible to display factor variables in graphs,
even if the SHAP values are calculated by a model that requires
numerical features. The plots are inspired by those provided by the
'shap' package in Python, but there is no dependency on it.
Author: Michael Mayer [aut, cre],
Adrian Stando [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between shapviz versions 0.7.0 dated 2023-04-10 and 0.8.0 dated 2023-05-09
DESCRIPTION | 8 MD5 | 92 NAMESPACE | 1 NEWS.md | 12 R/bee.R | 7 R/collapse_shap.R | 8 R/extractors.R | 12 R/methods.R | 60 R/shapviz-package.R | 4 R/shapviz.R | 175 - R/sv_dependence.R | 109 R/sv_force.R | 90 R/sv_importance.R | 109 R/sv_interaction.R | 64 R/sv_waterfall.R | 98 README.md | 3 build/vignette.rds |binary inst/doc/basic_use.R | 3 inst/doc/basic_use.Rmd | 22 inst/doc/basic_use.html | 42 inst/doc/multiple_output.Rmd | 2 inst/doc/multiple_output.html | 6 man/c.shapviz.Rd | 2 man/collapse_shap.Rd | 2 man/dim.shapviz.Rd | 2 man/dimnames.shapviz.Rd | 2 man/extractors.Rd | 13 man/figures/README-dep.svg | 4692 ++++++++++++++++++------------------ man/figures/VIGNETTE-dep-ranger.png |binary man/format_max.Rd | 2 man/is.mshapviz.Rd | 4 man/is.shapviz.Rd | 4 man/plus-.shapviz.Rd | 2 man/potential_interactions.Rd | 21 man/print.mshapviz.Rd | 2 man/print.shapviz.Rd | 2 man/rbind.shapviz.Rd | 4 man/shapviz.Rd | 82 man/sub-.shapviz.Rd | 2 man/summary.shapviz.Rd | 2 man/sv_dependence.Rd | 40 man/sv_force.Rd | 22 man/sv_importance.Rd | 38 man/sv_interaction.Rd | 29 man/sv_waterfall.Rd | 24 vignettes/basic_use.Rmd | 22 vignettes/multiple_output.Rmd | 2 47 files changed, 3019 insertions(+), 2925 deletions(-)
Title: User-Friendly R Interface to Biologic Web Services' API
Description: Currently fully supports Enrichr, JASPAR, miEAA, PANTHER,
Reactome, STRING, and UniProt! The goal of rbioapi is to provide a
user-friendly and consistent interface to biological databases and
services. In a way that insulates the user from the technicalities of
using web services API and creates a unified and easy-to-use interface
to biological and medical web services. This is an ongoing project; New
databases and services will be added periodically. Feel free to
suggest any databases or services you often use.
Author: Moosa Rezwani [aut, cre]
Maintainer: Moosa Rezwani <moosa.rezwani@gmail.com>
Diff between rbioapi versions 0.7.8 dated 2023-05-02 and 0.7.9 dated 2023-05-09
rbioapi-0.7.8/rbioapi/tests/testthat/test-api_calls_rba_api_call.R |only rbioapi-0.7.8/rbioapi/tests/testthat/test-api_calls_rba_skeleton.R |only rbioapi-0.7.8/rbioapi/tests/testthat/test-arguments_check_rba_args_req.R |only rbioapi-0.7.8/rbioapi/tests/testthat/test-response_parser.R |only rbioapi-0.7.9/rbioapi/DESCRIPTION | 6 rbioapi-0.7.9/rbioapi/MD5 | 100 +++----- rbioapi-0.7.9/rbioapi/NEWS.md | 6 rbioapi-0.7.9/rbioapi/R/enrichr.R | 71 +++-- rbioapi-0.7.9/rbioapi/R/helper_functions.R | 4 rbioapi-0.7.9/rbioapi/R/internal_functions.R | 46 +-- rbioapi-0.7.9/rbioapi/R/mieaa.R | 68 ++++- rbioapi-0.7.9/rbioapi/R/zzz.R | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi.R | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi.Rmd | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi.html | 12 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_do_enrich.R | 18 - rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_do_enrich.Rmd | 19 - rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_do_enrich.html | 124 ++-------- rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_enrichr.R | 12 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_enrichr.Rmd | 10 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_enrichr.html | 28 -- rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_jaspar.R | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_jaspar.Rmd | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_jaspar.html | 118 ++++----- rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_mieaa.R | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_mieaa.Rmd | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_mieaa.html | 30 +- rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_panther.R | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_panther.Rmd | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_panther.html | 10 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_reactome.R | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_reactome.Rmd | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_reactome.html | 14 - rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_string.R | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_string.Rmd | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_string.html | 22 - rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_uniprot.R | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_uniprot.Rmd | 2 rbioapi-0.7.9/rbioapi/inst/doc/rbioapi_uniprot.html | 22 - rbioapi-0.7.9/rbioapi/man/rba_options.Rd | 4 rbioapi-0.7.9/rbioapi/tests/testthat/helper_expects.R | 5 rbioapi-0.7.9/rbioapi/tests/testthat/test-api_calls_rba_httr.R | 70 ----- rbioapi-0.7.9/rbioapi/tests/testthat/test-elper_functions.R | 31 -- rbioapi-0.7.9/rbioapi/tests/testthat/test-internet_connectivity.R | 5 rbioapi-0.7.9/rbioapi/vignettes/rbioapi.Rmd | 2 rbioapi-0.7.9/rbioapi/vignettes/rbioapi_do_enrich.Rmd | 19 - rbioapi-0.7.9/rbioapi/vignettes/rbioapi_enrichr.Rmd | 10 rbioapi-0.7.9/rbioapi/vignettes/rbioapi_jaspar.Rmd | 2 rbioapi-0.7.9/rbioapi/vignettes/rbioapi_mieaa.Rmd | 2 rbioapi-0.7.9/rbioapi/vignettes/rbioapi_panther.Rmd | 2 rbioapi-0.7.9/rbioapi/vignettes/rbioapi_reactome.Rmd | 2 rbioapi-0.7.9/rbioapi/vignettes/rbioapi_string.Rmd | 2 rbioapi-0.7.9/rbioapi/vignettes/rbioapi_uniprot.Rmd | 2 53 files changed, 403 insertions(+), 525 deletions(-)
Title: MultiDimensional Feature Selection
Description: Functions for MultiDimensional Feature Selection (MDFS):
calculating multidimensional information gains, scoring variables,
finding important variables, plotting selection results.
This package includes an optional CUDA implementation that speeds up
information gain calculation using NVIDIA GPGPUs.
R. Piliszek et al. (2019) <doi:10.32614/RJ-2019-019>.
Author: Radoslaw Piliszek [aut, cre],
Krzysztof Mnich [aut],
Pawel Tabaszewski [aut],
Szymon Migacz [aut],
Andrzej Sulecki [aut],
Witold Remigiusz Rudnicki [aut]
Maintainer: Radoslaw Piliszek <r.piliszek@uwb.edu.pl>
Diff between MDFS versions 1.5.1 dated 2023-04-11 and 1.5.3 dated 2023-05-09
DESCRIPTION | 8 MD5 | 49 - NAMESPACE | 2 NEWS | 10 R/utils.R | 12 cleanup.win | 10 man/ComputePValue.Rd | 160 ++-- man/RelevantVariables.MDFS.Rd | 54 - man/RelevantVariables.Rd | 38 - man/as.data.frame.MDFS.Rd | 38 - man/madelon.Rd | 68 +- man/mdfs_omp_set_num_threads.Rd |only man/plot.MDFS.Rd | 36 - src/MDFS-win.def | 6 src/gpu/kernels.cu | 214 +++--- src/gpu/kernels2D.cuh | 1302 ++++++++++++++++++++-------------------- src/gpu/kernels3D.cuh | 1176 ++++++++++++++++++------------------ src/gpu/kernels4D.cuh | 1204 ++++++++++++++++++------------------ src/gpu/kernels5D.cuh | 1298 +++++++++++++++++++-------------------- src/gpu/splitkernel.cuh | 926 ++++++++++++++-------------- src/gpu/tableskernel.cuh | 340 +++++----- src/gpu/utils.cuh | 28 src/r_init.cpp | 1 src/r_interface.cpp | 11 src/r_interface.h | 5 tests/simple_run.R | 10 26 files changed, 3523 insertions(+), 3483 deletions(-)
Title: American Soccer Analysis API Client
Description: Provides a wrapper around the same API <https://app.americansocceranalysis.com/api/v1/__docs__/>
that powers the American Soccer Analysis app.
Author: Tyler Richardett [aut, cre],
American Soccer Analysis [cph]
Maintainer: Tyler Richardett <tyler.richardett@gmail.com>
Diff between itscalledsoccer versions 0.2.1 dated 2022-11-07 and 0.2.2 dated 2023-05-09
DESCRIPTION | 6 ++-- MD5 | 10 ++++---- NEWS.md | 72 +++++++++++++++++++++++++++++++++++++++++++++++++++++------ R/entities.R | 10 +------- R/stats.R | 4 --- R/utils.R | 22 +++++++++++++++++- 6 files changed, 97 insertions(+), 27 deletions(-)
More information about itscalledsoccer at CRAN
Permanent link
Title: Calculate the Final Size of an Epidemic
Description: Calculate the final size of a susceptible-infectious-recovered epidemic in a population with demographic variation in contact patterns and susceptibility to disease, as discussed in Miller (2012) <doi:10.1007/s11538-012-9749-6>.
Author: Pratik Gupte [aut, cre, cph] ,
Edwin Van Leeuwen [aut, cph] ,
Adam Kucharski [aut, cph] ,
Rosalind Eggo [ctb] ,
Hugo Gruson [ctb] ,
Thibaut Jombart [ctb] ,
Andree Valle-Campos [ctb] ,
Joshua W. Lambert [rev]
Maintainer: Pratik Gupte <pratik.gupte@lshtm.ac.uk>
Diff between finalsize versions 0.1 dated 2022-12-05 and 0.2.0 dated 2023-05-09
finalsize-0.1/finalsize/man/dot-solve_iterative.Rd |only finalsize-0.1/finalsize/man/dot-solve_newton.Rd |only finalsize-0.1/finalsize/src/iterative_solver.cpp |only finalsize-0.1/finalsize/src/newton_solver.cpp |only finalsize-0.1/finalsize/vignettes/references.bib |only finalsize-0.2.0/finalsize/DESCRIPTION | 49 finalsize-0.2.0/finalsize/MD5 | 87 + finalsize-0.2.0/finalsize/NAMESPACE | 3 finalsize-0.2.0/finalsize/NEWS.md |only finalsize-0.2.0/finalsize/R/RcppExports.R | 53 - finalsize-0.2.0/finalsize/R/final_size.R | 84 - finalsize-0.2.0/finalsize/R/r0_conversions.R |only finalsize-0.2.0/finalsize/R/r_eff.R |only finalsize-0.2.0/finalsize/README.md | 79 + finalsize-0.2.0/finalsize/build/vignette.rds |binary finalsize-0.2.0/finalsize/inst/doc/compare_sir_model.R |only finalsize-0.2.0/finalsize/inst/doc/compare_sir_model.Rmd |only finalsize-0.2.0/finalsize/inst/doc/compare_sir_model.html |only finalsize-0.2.0/finalsize/inst/doc/finalsize.R | 141 -- finalsize-0.2.0/finalsize/inst/doc/finalsize.Rmd | 219 ---- finalsize-0.2.0/finalsize/inst/doc/finalsize.html | 262 +--- finalsize-0.2.0/finalsize/inst/doc/susceptibility_matrices.R |only finalsize-0.2.0/finalsize/inst/doc/susceptibility_matrices.Rmd |only finalsize-0.2.0/finalsize/inst/doc/susceptibility_matrices.html |only finalsize-0.2.0/finalsize/inst/doc/uncertainty_params.R | 56 - finalsize-0.2.0/finalsize/inst/doc/uncertainty_params.Rmd | 73 + finalsize-0.2.0/finalsize/inst/doc/uncertainty_params.html | 212 +++- finalsize-0.2.0/finalsize/inst/doc/varying_contacts.R |only finalsize-0.2.0/finalsize/inst/doc/varying_contacts.Rmd |only finalsize-0.2.0/finalsize/inst/doc/varying_contacts.html |only finalsize-0.2.0/finalsize/inst/doc/varying_susceptibility.R | 90 + finalsize-0.2.0/finalsize/inst/doc/varying_susceptibility.Rmd | 146 ++ finalsize-0.2.0/finalsize/inst/doc/varying_susceptibility.html | 530 ++++++---- finalsize-0.2.0/finalsize/inst/include |only finalsize-0.2.0/finalsize/man/dot-final_size.Rd |only finalsize-0.2.0/finalsize/man/final_size.Rd | 38 finalsize-0.2.0/finalsize/man/lambda_to_r0.Rd |only finalsize-0.2.0/finalsize/man/r0_to_lambda.Rd |only finalsize-0.2.0/finalsize/man/r_eff.Rd |only finalsize-0.2.0/finalsize/src/Makevars | 1 finalsize-0.2.0/finalsize/src/Makevars.win | 1 finalsize-0.2.0/finalsize/src/RcppExports.cpp | 35 finalsize-0.2.0/finalsize/src/finalsize.cpp |only finalsize-0.2.0/finalsize/tests/testthat/test-basic.R | 2 finalsize-0.2.0/finalsize/tests/testthat/test-messages.R | 13 finalsize-0.2.0/finalsize/tests/testthat/test-newton_solver.R | 2 finalsize-0.2.0/finalsize/tests/testthat/test-r0_conversions.R |only finalsize-0.2.0/finalsize/tests/testthat/test-r_effective.R |only finalsize-0.2.0/finalsize/tests/testthat/test-solver_options.R | 2 finalsize-0.2.0/finalsize/tests/testthat/test-solver_speedups.R | 2 finalsize-0.2.0/finalsize/tests/testthat/test-statistical_correctness.R | 2 finalsize-0.2.0/finalsize/vignettes/compare_sir_model.Rmd |only finalsize-0.2.0/finalsize/vignettes/finalsize.Rmd | 219 ---- finalsize-0.2.0/finalsize/vignettes/references.json |only finalsize-0.2.0/finalsize/vignettes/susceptibility_matrices.Rmd |only finalsize-0.2.0/finalsize/vignettes/uncertainty_params.Rmd | 73 + finalsize-0.2.0/finalsize/vignettes/varying_contacts.Rmd |only finalsize-0.2.0/finalsize/vignettes/varying_susceptibility.Rmd | 146 ++ 58 files changed, 1394 insertions(+), 1226 deletions(-)
Title: Prediction and Interpretation in Decision Trees for
Classification and Regression
Description: Optimization of conditional inference trees from the package 'party'
for classification and regression.
For optimization, the model space is searched for the best tree on the full sample by
means of repeated subsampling. Restrictions are allowed so that only trees are accepted
which do not include pre-specified uninterpretable split results (cf. Weihs & Buschfeld, 2021a).
The function PrInDT() represents the basic resampling loop for 2-class classification (cf. Weihs
& Buschfeld, 2021a). The function RePrInDT() (repeated PrInDT()) allows for repeated
applications of PrInDT() for different percentages of the observations of the large and the
small classes (cf. Weihs & Buschfeld, 2021c). The function NesPrInDT() (nested PrInDT())
allows for an extra layer of subsampling for a specific factor variable (cf. Weihs & Buschfeld,
2021b). The functions PrInDTMulev() and PrInDTMulab() deal with multilevel and multilabel
classification. In addition to these PrInDT() variants for c [...truncated...]
Author: Claus Weihs [aut, cre],
Sarah Buschfeld [aut],
Niklas Nitsch [ctb]
Maintainer: Claus Weihs <claus.weihs@tu-dortmund.de>
Diff between PrInDT versions 1.0 dated 2023-04-12 and 1.0.1 dated 2023-05-09
DESCRIPTION | 6 +++--- MD5 | 48 ++++++++++++++++++++++++------------------------ R/FindSubstr.R | 8 +++++--- R/NesPrInDT.R | 8 ++++---- R/PrInDT.R | 14 +++++++++----- R/PrInDTAll.R | 6 +++--- R/PrInDTAllparts.R | 6 +++--- R/PrInDTMulab.R | 8 ++++---- R/PrInDTMulabAll.R | 6 +++--- R/PrInDTMulev.R | 4 ++-- R/PrInDTMulevALL.R | 4 ++-- R/PrInDTreg.R | 14 ++++++++++---- R/PrInDTregAll.R | 4 ++-- R/RePrInDT.R | 27 +++++++++++++++------------ man/NesPrInDT.Rd | 6 +++--- man/PrInDT.Rd | 8 ++++---- man/PrInDTAll.Rd | 4 ++-- man/PrInDTAllparts.Rd | 4 ++-- man/PrInDTMulab.Rd | 6 +++--- man/PrInDTMulabAll.Rd | 2 +- man/PrInDTMulev.Rd | 2 +- man/PrInDTMulevAll.Rd | 2 +- man/PrInDTreg.Rd | 6 +++--- man/PrInDTregAll.Rd | 2 +- man/RePrInDT.Rd | 8 ++++---- 25 files changed, 114 insertions(+), 99 deletions(-)
Title: Distributional Stochastic Frontier Analysis
Description: Framework to fit distributional stochastic frontier models. Casts the stochastic frontier model into the flexible framework of distributional regression or otherwise known as General Additive Models of Location, Scale and Shape (GAMLSS). Allows for linear, non-linear, random and spatial effects on all the parameters of the distribution of the output, e.g. effects on the production or cost function, heterogeneity of the noise and inefficiency. Available distributions are the normal-halfnormal and normal-exponential distribution. Estimation via the fast and reliable routines of the 'mgcv' package. For more details see Schmidt R, Kneib T (2022) <doi:10.48550/arXiv.2208.10294>.
Author: Rouven Schmidt [aut, cre]
Maintainer: Rouven Schmidt <rouven.schmidt@tu-clausthal.de>
Diff between dsfa versions 2.0.0 dated 2023-02-03 and 2.0.1 dated 2023-05-09
DESCRIPTION | 8 +-- MD5 | 64 ++++++++++++------------ NEWS.md | 8 +++ R/RcppExports.R | 13 +++- R/dcomper_mv.R | 13 ++-- R/dcop.R | 80 +++++++++++++++++++++++++++--- R/delta_bounds.R | 15 +++-- R/dnormexp.R | 2 R/dsfa-package.R | 37 +++++++++++--- R/efficiency.R | 10 +-- R/elasticity.R | 2 R/mgcv_comper.R | 33 ++++++++++-- R/mgcv_comper_mv.R | 102 +++++++++++++++++++-------------------- R/mgcv_cop.R | 61 +++++++++++++++++------ build/partial.rdb |binary inst/REFERENCES.bib | 10 +++ man/comper.Rd | 33 ++++++++++-- man/comper_mv.Rd | 8 ++- man/cop.Rd | 18 ++++-- man/dcomper_mv.Rd | 10 +++ man/dcop.Rd | 10 ++- man/delta_bounds.Rd | 4 + man/derivs_transform.Rd | 1 man/dnormexp.Rd | 2 man/dsfa.Rd | 37 +++++++++++--- man/efficiency.Rd | 8 +-- man/elasticity.Rd | 2 man/transform.Rd | 1 src/RcppExports.cpp | 36 ++++++++++--- src/copulas.cpp | 125 +++++++++++++++++++++++++++++++++++++++++++----- src/copulas.h | 4 + src/distributions.cpp | 52 ++++++++++++------- src/transform.cpp | 16 +++++- 33 files changed, 607 insertions(+), 218 deletions(-)
Title: Design and Evaluate Choice-Based Conjoint Survey Experiments
Description: Design and evaluate choice-based conjoint survey experiments in R. Generate survey designs, including randomized designs and Bayesian D-efficient designs as well as designs with "no choice" options and labeled designs. Conveniently inspect the design balance and overlap, and simulate choice data for a survey design either randomly or according to a multinomial or mixed logit utility model defined by user-provided prior parameters. Conduct power analyses on a survey design by estimating the same model multiple times using different subsets of the data to simulate different sample sizes. Choice simulation and model estimation are handled using the 'logitr' package, and Bayesian D-efficient designs are obtained using the 'idefix' package. For more details see Helveston (2023) <doi:10.18637/jss.v105.i10> and Traets et al (2020) <doi:10.18637/jss.v096.i03>.
Author: John Helveston [cre, aut, cph]
Maintainer: John Helveston <john.helveston@gmail.com>
Diff between cbcTools versions 0.2.0 dated 2023-02-28 and 0.3.0 dated 2023-05-09
DESCRIPTION | 6 MD5 | 17 +- NEWS.md | 5 R/design.R | 320 +++++++++++++++++++++++++++---------------- R/input_checks.R | 41 +++++ README.md | 7 build/partial.rdb |binary man/cbc_design.Rd | 23 +-- man/cbc_power.Rd | 5 tests/testthat/test_design.R |only 10 files changed, 286 insertions(+), 138 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-30 0.1.0
More information about BayesMortalityPlus at CRAN
Permanent link
More information about APackOfTheClones at CRAN
Permanent link
Title: Neural Networks using the Stuttgart Neural Network Simulator
(SNNS)
Description: The Stuttgart Neural Network Simulator (SNNS) is a library
containing many standard implementations of neural networks. This
package wraps the SNNS functionality to make it available from
within R. Using the 'RSNNS' low-level interface, all of the
algorithmic functionality and flexibility of SNNS can be accessed.
Furthermore, the package contains a convenient high-level
interface, so that the most common neural network topologies and
learning algorithms integrate seamlessly into R.
Author: Christoph Bergmeir [aut, cre, cph],
Jose M. Benitez [ths],
Andreas Zell [ctb] ,
Niels Mache [ctb] ,
Guenter Mamier [ctb] ,
Michael Vogt [ctb] ,
Sven Doering [ctb] ,
Ralf Huebner [ctb] ,
Kai-Uwe Herrmann [ctb] ,
Tobias Soyez [ctb] ,
Michael Schmalzl [ctb [...truncated...]
Maintainer: Christoph Bergmeir <c.bergmeir@decsai.ugr.es>
Diff between RSNNS versions 0.4-15 dated 2023-01-23 and 0.4-16 dated 2023-05-09
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- inst/CITATION | 4 ++-- src/Makevars | 2 +- src/Makevars.win | 2 +- src/SnnsCLib.h | 6 +++--- src/cc_learn.cpp | 2 +- src/cc_mac.h | 2 +- src/init_f.cpp | 8 ++++---- src/kr_pat_scan.cpp | 7 ++++--- src/learn_f.cpp | 6 +++--- src/scaled_conj_grad.cpp | 2 +- src/trans_f.cpp | 2 +- 14 files changed, 43 insertions(+), 38 deletions(-)
Title: Minimalist Async Evaluation Framework for R
Description: Lightweight parallel code execution and distributed computing.
Designed for simplicity, a 'mirai' evaluates an R expression asynchronously,
on local or network resources, resolving automatically upon completion.
Features efficient task scheduling, scalability beyond R connection limits,
and transports faster than TCP/IP for inter-process communications, courtesy
of 'nanonext' and 'NNG' (Nanomsg Next Gen).
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between mirai versions 0.8.3 dated 2023-04-17 and 0.8.4 dated 2023-05-09
mirai-0.8.3/mirai/man/dot-.Rd |only mirai-0.8.3/mirai/man/grapes-greater-than-greater-than-grapes.Rd |only mirai-0.8.4/mirai/DESCRIPTION | 8 mirai-0.8.4/mirai/MD5 | 34 mirai-0.8.4/mirai/NAMESPACE | 5 mirai-0.8.4/mirai/NEWS.md | 10 mirai-0.8.4/mirai/R/mirai-package.R | 28 mirai-0.8.4/mirai/R/mirai.R | 565 +++++----- mirai-0.8.4/mirai/R/pipe.R | 52 mirai-0.8.4/mirai/README.md | 137 +- mirai-0.8.4/mirai/man/call_mirai.Rd | 18 mirai-0.8.4/mirai/man/daemons.Rd | 82 - mirai-0.8.4/mirai/man/deferred-execution-pipe.Rd |only mirai-0.8.4/mirai/man/dot-server.Rd |only mirai-0.8.4/mirai/man/figures/logo.png |binary mirai-0.8.4/mirai/man/mirai-package.Rd | 2 mirai-0.8.4/mirai/man/mirai.Rd | 53 mirai-0.8.4/mirai/man/saisei.Rd | 12 mirai-0.8.4/mirai/man/server.Rd | 18 mirai-0.8.4/mirai/tests/tests.R | 168 +- 20 files changed, 688 insertions(+), 504 deletions(-)
Title: Description of a Data Frame
Description: Helps to describe a data frame in hand. Has been developed during PhD work of the maintainer. More information may be obtained from Garai and Paul (2023) <doi:10.1016/j.iswa.2023.200202>.
Author: Sandip Garai [aut, cre],
Ranjit Kumar Paul [aut]
Maintainer: Sandip Garai <sandipnicksandy@gmail.com>
Diff between DescribeDF versions 0.2.0 dated 2023-04-25 and 0.2.1 dated 2023-05-09
DESCRIPTION | 16 ++++++++-------- MD5 | 4 ++-- R/descriptiondf.R | 39 ++++++++++++++++++++++----------------- 3 files changed, 32 insertions(+), 27 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] ,
Christophe Dervieux [ctb] ,
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Atsushi Yasumoto [ctb] ,
Aust Frederik [ctb] ,
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Clif [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.33 dated 2023-03-06 and 0.34 dated 2023-05-09
DESCRIPTION | 17 ++++++------- MD5 | 31 ++++++++++++----------- NAMESPACE | 1 R/bookdown-package.R | 2 - R/ebook.R | 15 ++++++----- R/utils.R | 13 ++------- README.md | 51 +++++++++++++++++++-------------------- build/vignette.rds |binary inst/CITATION | 8 +++--- inst/doc/bookdown.Rmd | 2 - inst/doc/bookdown.html | 4 +-- inst/templates/gitbook.html | 4 +++ man/bookdown-package.Rd | 4 +-- man/figures/logo.png |binary tests/testthat/helper-bs4_book.R | 6 +--- tests/testthat/test-ebook.R |only vignettes/bookdown.Rmd | 2 - 17 files changed, 80 insertions(+), 80 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-12 1.0.0
Title: Find Optimal Sampling Locations Based on Spatial Covariate(s)
Description: Create sampling designs using the surface reconstruction algorithm.
Original method by: Olsson, D. 2002. A method to optimize soil sampling from
ancillary data. Poster presenterad at: NJF seminar no. 336,
Implementation of Precision Farming in Practical Agriculture, 10-12
June 2002, Skara, Sweden.
Author: Kristin Persson [aut, cre, cph],
Mats Soderstrom [ctb, cph],
John Mutua [ctb]
Maintainer: Kristin Persson <kristin.persson@slu.se>
Diff between SurfaceTortoise versions 1.0.2 dated 2020-10-02 and 2.0.1 dated 2023-05-09
SurfaceTortoise-1.0.2/SurfaceTortoise/README.md |only SurfaceTortoise-2.0.1/SurfaceTortoise/DESCRIPTION | 35 SurfaceTortoise-2.0.1/SurfaceTortoise/LICENSE | 6 SurfaceTortoise-2.0.1/SurfaceTortoise/MD5 | 13 SurfaceTortoise-2.0.1/SurfaceTortoise/NAMESPACE | 14 SurfaceTortoise-2.0.1/SurfaceTortoise/R/tortoise.R | 1072 +++++++++--------- SurfaceTortoise-2.0.1/SurfaceTortoise/man/tortoise.Rd | 278 ++-- SurfaceTortoise-2.0.1/SurfaceTortoise/tests |only 8 files changed, 733 insertions(+), 685 deletions(-)
More information about SurfaceTortoise at CRAN
Permanent link
Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines spatial data types and supports geometrical operations
on them. Data types include point patterns, windows (domains),
pixel images, line segment patterns, tessellations and hyperframes.
Capabilities include creation and manipulation of data
(using command line or graphical interaction),
plotting, geometrical operations (rotation, shift, rescale,
affine transformation), convex hull, discretisation and
pixellation, Dirichlet tessellation, Delaunay triangulation,
pairwise distances, nearest-neighbour distances,
distance transform, morphological operations
(erosion, dilation, closing, opening), quadrat counting,
geometrical measurement, geometrical covariance,
colour maps, calculus on spatial domains,
Gaussian blur, level sets of images, transects of images,
intersections between objects, minimum distance matching.
(Excludes spatial data on a network, which are supported by
the package 'spatstat.linnet'.)
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Tilman Davies [ctb],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Greg McSwiggan [ctb, cph],
Sebastian Meyer [ctb, cph],
Jens Oehlschlaegel [ctb, cph],
Suman Rakshit [ctb], [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.geom versions 3.1-0 dated 2023-03-12 and 3.2-1 dated 2023-05-09
spatstat.geom-3.1-0/spatstat.geom/man/Window.quad.Rd |only spatstat.geom-3.1-0/spatstat.geom/man/as.mask.psp.Rd |only spatstat.geom-3.2-1/spatstat.geom/DESCRIPTION | 8 spatstat.geom-3.2-1/spatstat.geom/MD5 | 61 ++-- spatstat.geom-3.2-1/spatstat.geom/NAMESPACE | 8 spatstat.geom-3.2-1/spatstat.geom/NEWS | 59 +++ spatstat.geom-3.2-1/spatstat.geom/R/as.im.R | 35 +- spatstat.geom-3.2-1/spatstat.geom/R/convexdist.R | 2 spatstat.geom-3.2-1/spatstat.geom/R/distfun.R | 15 - spatstat.geom-3.2-1/spatstat.geom/R/funxy.R | 3 spatstat.geom-3.2-1/spatstat.geom/R/images.R | 4 spatstat.geom-3.2-1/spatstat.geom/R/nnfun.R | 10 spatstat.geom-3.2-1/spatstat.geom/R/owin2mask.R | 41 ++ spatstat.geom-3.2-1/spatstat.geom/R/psp2pix.R | 4 spatstat.geom-3.2-1/spatstat.geom/R/tess.R | 21 - spatstat.geom-3.2-1/spatstat.geom/R/util.R | 77 ++++- spatstat.geom-3.2-1/spatstat.geom/R/window.R | 149 ++++++---- spatstat.geom-3.2-1/spatstat.geom/inst/doc/packagesizes.txt | 2 spatstat.geom-3.2-1/spatstat.geom/man/Window.Rd | 22 + spatstat.geom-3.2-1/spatstat.geom/man/Window.tess.Rd |only spatstat.geom-3.2-1/spatstat.geom/man/as.im.Rd | 9 spatstat.geom-3.2-1/spatstat.geom/man/as.mask.Rd | 129 ++++++-- spatstat.geom-3.2-1/spatstat.geom/man/discretise.Rd | 14 spatstat.geom-3.2-1/spatstat.geom/man/is.boxx.Rd |only spatstat.geom-3.2-1/spatstat.geom/man/macros/defns.Rd | 1 spatstat.geom-3.2-1/spatstat.geom/man/methods.boxx.Rd | 21 - spatstat.geom-3.2-1/spatstat.geom/man/owin2mask.Rd | 56 +++ spatstat.geom-3.2-1/spatstat.geom/man/pixellate.psp.Rd | 4 spatstat.geom-3.2-1/spatstat.geom/man/progressreport.Rd | 25 + spatstat.geom-3.2-1/spatstat.geom/man/psp2mask.Rd |only spatstat.geom-3.2-1/spatstat.geom/man/spatstat.geom-internal.Rd | 4 spatstat.geom-3.2-1/spatstat.geom/src/knn3DdistX.h | 12 spatstat.geom-3.2-1/spatstat.geom/src/nn3DdistX.h | 27 + spatstat.geom-3.2-1/spatstat.geom/tests/testsUtoZ.R | 22 + 34 files changed, 632 insertions(+), 213 deletions(-)
Title: Spatial Absorbing Markov Chains
Description: Implements functions for working with absorbing Markov chains. The
implementation is based on the framework described in "Toward a unified
framework for connectivity that disentangles movement and mortality in space
and time" by Fletcher et al. (2019) <doi:10.1111/ele.13333>, which applies
them to spatial ecology. This framework incorporates both resistance and
absorption with spatial absorbing Markov chains (SAMC) to provide several
short-term and long-term predictions for metrics related to connectivity in
landscapes. Despite the ecological context of the framework, this package
can be used in any application of absorbing Markov chains.
Author: Andrew Marx [aut, cre, cph] ,
Robert Fletcher [ctb] ,
Miguel Acevedo [ctb] ,
Jorge Sefair [ctb] ,
Chao Wang [ctb] ,
Hughes Josie [ctb] ,
Barrett Griffin [ctb]
Maintainer: Andrew Marx <ajm.rpackages@gmail.com>
Diff between samc versions 3.2.0 dated 2023-05-04 and 3.2.1 dated 2023-05-09
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/check.R | 4 ++-- inst/doc/overview.html | 4 ++-- 5 files changed, 17 insertions(+), 11 deletions(-)
Title: Access and Analyze eBird Status and Trends Data
Description: Tools to download, load, plot, and analyze eBird Status and
Trends Data Products
(<https://science.ebird.org/en/status-and-trends>). eBird
(<https://ebird.org/home>) is a global database of bird observations
collected by member of the public. eBird Status and Trends uses these
data to model global bird abundances, range boundaries, and habitat
associations at a high spatial and temporal resolution.
Author: Matthew Strimas-Mackey [aut, cre]
,
Shawn Ligocki [aut],
Tom Auer [aut] ,
Daniel Fink [aut] ,
Cornell Lab of Ornithology [cph]
Maintainer: Matthew Strimas-Mackey <mes335@cornell.edu>
Diff between ebirdst versions 2.2021.2 dated 2023-04-27 and 2.2021.3 dated 2023-05-09
DESCRIPTION | 6 +++--- MD5 | 17 +++++++++-------- NAMESPACE | 1 + NEWS.md | 5 +++++ R/ebirdst-habitat.R | 6 +----- R/ebirdst-ppms.R | 45 +++++++++++++++++++++++++++++++++++++++++++++ R/stixelize.R | 7 +++++-- inst/doc/ebirdst.html | 4 ++-- inst/doc/rasters.html | 4 ++-- man/calculate_mcc_f1.Rd |only 10 files changed, 73 insertions(+), 22 deletions(-)
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' family of packages
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 3.0-2 dated 2023-03-11 and 3.0-3 dated 2023-05-09
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 17 +++++++++++++++++ R/utilmatrix.R | 3 ++- R/utiltext.R | 19 +++++++++++++++---- inst/doc/packagesizes.txt | 1 + man/articlebeforenumber.Rd | 25 ++++++++++++++++++++----- man/macros/defns.Rd | 1 + 8 files changed, 67 insertions(+), 21 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Location Identify Tool
Description: Determine the sea area where the fishing boat operates.
The latitude and longitude of geographic coordinates are used to match oceanic areas and economic sea areas.
You can plot the distribution map with dotplot() function.
Please refer to Flanders Marine Institute (2020) <doi:10.14284/403>.
Author: shiao chih hao [aut, cre, ctb],
chang shu ting [aut, ctb],
wang shyh jiun [aut, ctb]
Maintainer: shiao chih hao <chihhao@ofdc.org.tw>
Diff between oceanic versions 0.1.5 dated 2023-01-05 and 0.1.6 dated 2023-05-09
DESCRIPTION | 16 +++++++++------- MD5 | 16 ++++++++-------- NAMESPACE | 3 +-- R/dotplot.R | 23 ++++------------------- R/idfeez.R | 8 ++++---- R/idfocean.R | 29 +++++++++++++++++------------ R/idfport.R | 24 +++++++++++++----------- data/eez_rg.rda |binary man/dotplot.Rd | 5 +---- 9 files changed, 57 insertions(+), 67 deletions(-)