Title: Basic Sensitivity Analysis of Epidemiological Results
Description: Basic sensitivity analysis of the observed relative risks adjusting
for unmeasured confounding and misclassification of the
exposure/outcome, or both. It follows the bias analysis methods and
examples from the book by Lash T.L, Fox M.P, and Fink A.K.
"Applying Quantitative Bias Analysis to Epidemiologic Data",
('Springer', 2021).
Author: Denis Haine [aut, cre]
Maintainer: Denis Haine <denis.haine@gmail.com>
Diff between episensr versions 1.1.0 dated 2021-08-20 and 1.2.0 dated 2023-05-16
episensr-1.1.0/episensr/man/misclassification_cov.Rd |only episensr-1.2.0/episensr/DESCRIPTION | 16 episensr-1.2.0/episensr/MD5 | 64 - episensr-1.2.0/episensr/NAMESPACE | 2 episensr-1.2.0/episensr/NEWS.md | 7 episensr-1.2.0/episensr/R/confounders.array.R | 75 +- episensr-1.2.0/episensr/R/confounders.ext.R | 55 - episensr-1.2.0/episensr/R/confounders.limit.R | 44 - episensr-1.2.0/episensr/R/misclassification.cov.R | 10 episensr-1.2.0/episensr/R/plot.episensr.booted.R | 16 episensr-1.2.0/episensr/R/plot.episensr.probsens.R | 30 episensr-1.2.0/episensr/R/print.episensr.R | 8 episensr-1.2.0/episensr/README.md | 140 +-- episensr-1.2.0/episensr/build/vignette.rds |binary episensr-1.2.0/episensr/inst/CITATION | 20 episensr-1.2.0/episensr/inst/doc/b_probabilistic.html | 134 ++- episensr-1.2.0/episensr/inst/doc/c_multiple_bias.R | 4 episensr-1.2.0/episensr/inst/doc/c_multiple_bias.Rmd | 10 episensr-1.2.0/episensr/inst/doc/c_multiple_bias.html | 238 +++--- episensr-1.2.0/episensr/inst/doc/d_other_sens.R | 17 episensr-1.2.0/episensr/inst/doc/d_other_sens.Rmd | 19 episensr-1.2.0/episensr/inst/doc/d_other_sens.html | 261 ++++--- episensr-1.2.0/episensr/inst/doc/episensr.Rmd | 2 episensr-1.2.0/episensr/inst/doc/episensr.html | 358 +++++----- episensr-1.2.0/episensr/man/confounders.array.Rd | 24 episensr-1.2.0/episensr/man/confounders.ext.Rd | 18 episensr-1.2.0/episensr/man/confounders.limit.Rd | 18 episensr-1.2.0/episensr/man/misclassification.cov.Rd |only episensr-1.2.0/episensr/tests/testthat/test-confounders.array.R | 23 episensr-1.2.0/episensr/tests/testthat/test-confounders.ext.R | 9 episensr-1.2.0/episensr/tests/testthat/test-confounders.limit.R | 30 episensr-1.2.0/episensr/vignettes/c_multiple_bias.Rmd | 10 episensr-1.2.0/episensr/vignettes/d_other_sens.Rmd | 19 episensr-1.2.0/episensr/vignettes/episensr.Rmd | 2 34 files changed, 878 insertions(+), 805 deletions(-)
Title: Spatial Sampling Design and Analysis
Description: A design-based approach to statistical inference, with a focus on spatial data. Spatially balanced samples are selected using the Generalized Random Tessellation Stratified (GRTS) algorithm. The GRTS algorithm can be applied to finite resources (point geometries) and infinite resources (linear / linestring and areal / polygon geometries) and flexibly accommodates a diverse set of sampling design features, including stratification, unequal inclusion probabilities, proportional (to size) inclusion probabilities, legacy (historical) sites, a minimum distance between sites, and two options for replacement sites (reverse hierarchical order and nearest neighbor). Data are analyzed using a wide range of analysis functions that perform categorical variable analysis, continuous variable analysis, attributable risk analysis, risk difference analysis, relative risk analysis, change analysis, and trend analysis. spsurvey can also be used to summarize objects, visualize objects, select samples that [...truncated...]
Author: Michael Dumelle [aut, cre] ,
Tom Kincaid [aut],
Tony Olsen [aut],
Marc Weber [aut],
Don Stevens [ctb],
Denis White [ctb]
Maintainer: Michael Dumelle <Dumelle.Michael@epa.gov>
Diff between spsurvey versions 5.4.1 dated 2023-01-16 and 5.5.0 dated 2023-05-16
DESCRIPTION | 6 MD5 | 81 - NAMESPACE | 1 NEWS.md | 26 R/adjwgtNR.R |only R/attrisk_analysis.R | 26 R/cat_analysis.R | 12 R/change_analysis.R | 12 R/cont_analysis.R | 12 R/cont_cdftest.R | 12 R/diffrisk_analysis.R | 18 R/dsgn_check.R | 17 R/errorprnt.R | 4 R/grts.R | 41 R/grts_stratum.R | 4 R/irs.R | 34 R/irs_stratum.R | 4 R/relrisk_analysis.R | 18 R/stopprnt.R | 4 R/trend_analysis.R | 12 R/warnprnt.R | 22 README.md | 9 build/vignette.rds |binary inst/doc/EDA.html | 1320 ------------------------------ inst/doc/analysis.html | 1340 ------------------------------- inst/doc/sampling.html | 1372 +------------------------------- inst/doc/start-here.html | 1324 ------------------------------ man/adjwgtNR.Rd |only man/attrisk_analysis.Rd | 8 man/diffrisk_analysis.Rd | 8 man/grts.Rd | 4 man/irs.Rd | 4 man/relrisk_analysis.Rd | 8 tests/testthat/test-adjwgtNR.R |only tests/testthat/test-attrisk_analysis.R | 41 tests/testthat/test-cat_analysis.R | 8 tests/testthat/test-change_analysis.R | 11 tests/testthat/test-cont_analysis.R | 9 tests/testthat/test-diffrisk_analysis.R | 41 tests/testthat/test-grts.R | 5 tests/testthat/test-irs.R | 6 tests/testthat/test-relrisk_analysis.R | 41 tests/testthat/test-trend_analysis.R | 10 43 files changed, 552 insertions(+), 5383 deletions(-)
Title: Fake Web Apps for HTTP Testing
Description: Create a web app that makes it easier to test web clients
without using the internet. It includes a web app framework with path
matching, parameters and templates. Can parse various 'HTTP' request
bodies. Can send 'JSON' data or files from the disk. Includes a web
app that implements the 'httpbin.org' web service.
Author: Gabor Csardi [aut, cre],
RStudio, Pbc. [cph, fnd],
Civetweb contributors [ctb] ,
Redoc contributors [ctb] ,
L. Peter Deutsch [ctb] ,
Martin Purschke [ctb] ,
Aladdin Enterprises [cph] ,
Maelle Salmon [ctb]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between webfakes versions 1.1.7 dated 2023-02-08 and 1.2.0 dated 2023-05-16
DESCRIPTION | 14 MD5 | 69 + NAMESPACE | 3 NEWS.md | 27 R/app.R | 10 R/httpbin.R | 485 +++++++++++- R/mw-authorization.R |only R/mw-cookie-parser.R |only R/mw-etag.R | 13 R/mw-range-parser.R |only R/request.R | 4 R/response.R | 110 ++ R/utils.R | 21 README.md | 86 +- inst/examples/httpbin/assets/forms-post.html |only inst/examples/httpbin/assets/httpbin.html | 1091 +++++++++++++++------------ inst/examples/httpbin/openapi.yaml | 493 ++++++++++++ man/glossary.Rd | 2 man/http_time_stamp.Rd |only man/httpbin_app.Rd | 2 man/mw_cookie_parser.Rd |only man/mw_etag.Rd | 9 man/mw_json.Rd | 2 man/mw_log.Rd | 2 man/mw_multipart.Rd | 2 man/mw_range_parser.Rd |only man/mw_raw.Rd | 2 man/mw_static.Rd | 2 man/mw_text.Rd | 2 man/mw_urlencoded.Rd | 2 man/new_app.Rd | 10 man/webfakes-package.Rd | 2 man/webfakes_response.Rd | 16 src/rweb.c | 2 tests/testthat/_snaps |only tests/testthat/helper.R | 8 tests/testthat/test-httpbin.R | 264 ++++++ tests/testthat/test-mw-range-parser.R |only tests/testthat/test-request.R |only 39 files changed, 2179 insertions(+), 576 deletions(-)
Title: High-Dimensional Regression with Measurement Error
Description: Penalized regression for generalized linear models for
measurement error problems (aka. errors-in-variables). The package
contains a version of the lasso (L1-penalization) which corrects
for measurement error (Sorensen et al. (2015) <doi:10.5705/ss.2013.180>).
It also contains an implementation of the Generalized Matrix Uncertainty
Selector, which is a version the (Generalized) Dantzig Selector for the
case of measurement error (Sorensen et al. (2018) <doi:10.1080/10618600.2018.1425626>).
Author: Oystein Sorensen [aut, cre]
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>
Diff between hdme versions 0.5.1 dated 2023-02-28 and 0.6.0 dated 2023-05-16
DESCRIPTION | 10 ++--- MD5 | 48 ++++++++++++++-------------- NAMESPACE | 1 NEWS.md | 8 ++++ R/corrected_lasso.R | 8 ++-- R/corrected_lasso_gaussian.R | 4 +- R/corrected_lasso_glm.R | 3 + R/cv_corrected_lasso.R | 6 ++- R/gmu_lasso.R | 2 + R/plot.corrected_lasso.R | 8 ++-- R/plot.cv_corrected_lasso.R | 6 +-- R/plot.cv_gds.R | 6 +-- R/plot.gmus.R | 4 +- R/project_gradient.R | 3 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/hdme.Rmd | 2 - inst/doc/hdme.html | 53 +++++++++++++++---------------- man/corrected_lasso.Rd | 6 ++- man/cv_corrected_lasso.Rd | 6 ++- tests/testthat/test_corrected_lasso.R | 4 +- tests/testthat/test_cv_corrected_lasso.R | 10 ++--- tests/testthat/test_gmus.R | 19 +++++++---- tests/testthat/test_plots.R | 8 ++-- vignettes/hdme.Rmd | 2 - 25 files changed, 129 insertions(+), 98 deletions(-)
Title: Hardy-Weinberg Equilibrium in Polyploids
Description: Inference concerning equilibrium and random mating in
autopolyploids. Methods are available to test for equilibrium
and random mating at any even ploidy level (>2) in the presence
of double reduction at biallelic loci. For autopolyploid populations
in equilibrium, methods are available to estimate the degree of
double reduction. We also provide functions to calculate genotype
frequencies at equilibrium, or after one or several rounds of
random mating, given rates of double reduction. The main function is
hwefit(). This material is based upon work supported by the
National Science Foundation under Grant No. 2132247. The opinions,
findings, and conclusions or recommendations expressed are those of
the author and do not necessarily reflect the views of the National
Science Foundation. For details of these methods, see
Gerard (2022a) <doi:10.1111/biom.13722> and
Gerard (2022b) <doi:10.1101/2022.08.11.503635>.
Author: David Gerard [aut, cre] ,
NSF DBI 2132247 [fnd]
Maintainer: David Gerard <gerard.1787@gmail.com>
Diff between hwep versions 2.0.1 dated 2023-03-15 and 2.0.2 dated 2023-05-16
hwep-2.0.1/hwep/src/Makevars.win |only hwep-2.0.2/hwep/DESCRIPTION | 6 hwep-2.0.2/hwep/MD5 | 17 hwep-2.0.2/hwep/NEWS.md | 5 hwep-2.0.2/hwep/R/bayes.R | 98 ++++- hwep-2.0.2/hwep/README.md | 82 ++-- hwep-2.0.2/hwep/inst/doc/introduction.html | 517 ++++++++++++----------------- hwep-2.0.2/hwep/man/rmbayes.Rd | 7 hwep-2.0.2/hwep/man/rmbayesgl.Rd | 5 hwep-2.0.2/hwep/man/simgl.Rd | 19 - 10 files changed, 384 insertions(+), 372 deletions(-)
Title: Version, Share, Deploy, and Monitor Models
Description: The goal of 'vetiver' is to provide fluent tooling to
version, share, deploy, and monitor a trained model. Functions handle
both recording and checking the model's input data prototype, and
predicting from a remote API endpoint. The 'vetiver' package is
extensible, with generics that can support many kinds of models.
Author: Julia Silge [cre, aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Julia Silge <julia.silge@posit.co>
Diff between vetiver versions 0.2.0 dated 2023-01-26 and 0.2.1 dated 2023-05-16
vetiver-0.2.0/vetiver/tests/testthat/_snaps/monitor |only vetiver-0.2.0/vetiver/tests/testthat/helper-redact.R |only vetiver-0.2.1/vetiver/DESCRIPTION | 37 vetiver-0.2.1/vetiver/LICENSE | 2 vetiver-0.2.1/vetiver/MD5 | 148 vetiver-0.2.1/vetiver/NAMESPACE | 36 vetiver-0.2.1/vetiver/NEWS.md | 16 vetiver-0.2.1/vetiver/R/api.R | 7 vetiver-0.2.1/vetiver/R/attach-pkgs.R | 8 vetiver-0.2.1/vetiver/R/endpoint.R | 2 vetiver-0.2.1/vetiver/R/handlers.R | 3 vetiver-0.2.1/vetiver/R/import-standalone-obj-type.R |only vetiver-0.2.1/vetiver/R/import-standalone-types-check.R |only vetiver-0.2.1/vetiver/R/keras.R |only vetiver-0.2.1/vetiver/R/luz.R |only vetiver-0.2.1/vetiver/R/monitor.R | 14 vetiver-0.2.1/vetiver/R/open-api-spec.R | 3 vetiver-0.2.1/vetiver/R/pin-read-write.R | 84 vetiver-0.2.1/vetiver/R/prototype.R | 1 vetiver-0.2.1/vetiver/R/recipe.R |only vetiver-0.2.1/vetiver/R/renv.R | 8 vetiver-0.2.1/vetiver/R/rsconnect.R | 6 vetiver-0.2.1/vetiver/R/sagemaker-utils.R |only vetiver-0.2.1/vetiver/R/sagemaker.R |only vetiver-0.2.1/vetiver/R/vetiver-model.R | 18 vetiver-0.2.1/vetiver/R/vetiver-package.R | 5 vetiver-0.2.1/vetiver/R/write-docker.R | 25 vetiver-0.2.1/vetiver/R/write-plumber.R | 53 vetiver-0.2.1/vetiver/README.md | 11 vetiver-0.2.1/vetiver/build/vignette.rds |binary vetiver-0.2.1/vetiver/inst/chicago_rpart.R | 6 vetiver-0.2.1/vetiver/inst/doc/vetiver.Rmd | 2 vetiver-0.2.1/vetiver/inst/doc/vetiver.html | 20 vetiver-0.2.1/vetiver/inst/mtcars_keras.R |only vetiver-0.2.1/vetiver/inst/mtcars_luz.R |only vetiver-0.2.1/vetiver/inst/requirements |only vetiver-0.2.1/vetiver/inst/vendor/renv.R | 6219 ++++++---- vetiver-0.2.1/vetiver/man/augment.vetiver_endpoint_sagemaker.Rd |only vetiver-0.2.1/vetiver/man/figures/logo.png |binary vetiver-0.2.1/vetiver/man/handler_startup.Rd | 22 vetiver-0.2.1/vetiver/man/predict.vetiver_endpoint_sagemaker.Rd |only vetiver-0.2.1/vetiver/man/vetiver-package.Rd | 4 vetiver-0.2.1/vetiver/man/vetiver_compute_metrics.Rd | 6 vetiver-0.2.1/vetiver/man/vetiver_create_description.Rd | 23 vetiver-0.2.1/vetiver/man/vetiver_create_meta.Rd | 14 vetiver-0.2.1/vetiver/man/vetiver_create_ptype.Rd | 14 vetiver-0.2.1/vetiver/man/vetiver_create_rsconnect_bundle.Rd | 2 vetiver-0.2.1/vetiver/man/vetiver_deploy_rsconnect.Rd | 2 vetiver-0.2.1/vetiver/man/vetiver_deploy_sagemaker.Rd |only vetiver-0.2.1/vetiver/man/vetiver_endpoint_sagemaker.Rd |only vetiver-0.2.1/vetiver/man/vetiver_model.Rd | 9 vetiver-0.2.1/vetiver/man/vetiver_pin_write.Rd | 13 vetiver-0.2.1/vetiver/man/vetiver_prepare_docker.Rd | 4 vetiver-0.2.1/vetiver/man/vetiver_python_requirements.Rd |only vetiver-0.2.1/vetiver/man/vetiver_sm_build.Rd |only vetiver-0.2.1/vetiver/man/vetiver_sm_delete.Rd |only vetiver-0.2.1/vetiver/man/vetiver_write_docker.Rd | 7 vetiver-0.2.1/vetiver/tests/testthat/_snaps/dashboard.md | 4 vetiver-0.2.1/vetiver/tests/testthat/_snaps/keras.md |only vetiver-0.2.1/vetiver/tests/testthat/_snaps/luz.md |only vetiver-0.2.1/vetiver/tests/testthat/_snaps/monitor.md | 4 vetiver-0.2.1/vetiver/tests/testthat/_snaps/pin-read-write.md | 5 vetiver-0.2.1/vetiver/tests/testthat/_snaps/recipe.md |only vetiver-0.2.1/vetiver/tests/testthat/_snaps/sagemaker.md |only vetiver-0.2.1/vetiver/tests/testthat/_snaps/write-plumber.md | 36 vetiver-0.2.1/vetiver/tests/testthat/helper.R |only vetiver-0.2.1/vetiver/tests/testthat/setup.R |only vetiver-0.2.1/vetiver/tests/testthat/test-api.R | 25 vetiver-0.2.1/vetiver/tests/testthat/test-caret.R | 12 vetiver-0.2.1/vetiver/tests/testthat/test-choose-version.R | 23 vetiver-0.2.1/vetiver/tests/testthat/test-gam.R | 11 vetiver-0.2.1/vetiver/tests/testthat/test-glm.R | 11 vetiver-0.2.1/vetiver/tests/testthat/test-keras.R |only vetiver-0.2.1/vetiver/tests/testthat/test-kproto.R | 11 vetiver-0.2.1/vetiver/tests/testthat/test-luz.R |only vetiver-0.2.1/vetiver/tests/testthat/test-mlr3.R | 10 vetiver-0.2.1/vetiver/tests/testthat/test-monitor.R | 1 vetiver-0.2.1/vetiver/tests/testthat/test-pin-read-write.R | 67 vetiver-0.2.1/vetiver/tests/testthat/test-predict.R | 7 vetiver-0.2.1/vetiver/tests/testthat/test-ranger.R | 6 vetiver-0.2.1/vetiver/tests/testthat/test-recipe.R |only vetiver-0.2.1/vetiver/tests/testthat/test-sagemaker.R |only vetiver-0.2.1/vetiver/tests/testthat/test-stacks.R | 7 vetiver-0.2.1/vetiver/tests/testthat/test-tidymodels.R | 11 vetiver-0.2.1/vetiver/tests/testthat/test-type-convert.R | 7 vetiver-0.2.1/vetiver/tests/testthat/test-write-plumber.R | 32 vetiver-0.2.1/vetiver/tests/testthat/test-xgboost.R | 11 vetiver-0.2.1/vetiver/tests/testthat/vetiver_renv.lock | 271 vetiver-0.2.1/vetiver/vignettes/vetiver.Rmd | 2 89 files changed, 5121 insertions(+), 2307 deletions(-)
Title: 'HiGHS' Optimization Solver
Description: R interface to 'HiGHS', an optimization solver for solving mixed integer
optimization problems with quadratic or linear objective and linear constraints.
Author: Florian Schwendinger [aut, cre],
Dirk Schumacher [aut],
Julian Hall [cph],
Ivet Galabova [cph],
Leona Gottwald [cph],
Michael Feldmeier [cph]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between highs versions 0.1-6 dated 2022-12-15 and 0.1-10 dated 2023-05-16
highs-0.1-10/highs/DESCRIPTION | 6 highs-0.1-10/highs/MD5 | 214 highs-0.1-10/highs/NAMESPACE | 5 highs-0.1-10/highs/R/RcppExports.R | 100 highs-0.1-10/highs/R/highs.R | 421 + highs-0.1-10/highs/R/options.R | 22 highs-0.1-10/highs/R/smat.R | 9 highs-0.1-10/highs/README.md | 68 highs-0.1-10/highs/configure | 1 highs-0.1-10/highs/inst/CITATION | 9 highs-0.1-10/highs/inst/HiGHS/CMakeLists.txt | 142 highs-0.1-10/highs/inst/HiGHS/CONTRIBUTING.md | 11 highs-0.1-10/highs/inst/HiGHS/README.md | 34 highs-0.1-10/highs/inst/HiGHS/app/CMakeLists.txt | 6 highs-0.1-10/highs/inst/HiGHS/app/highs_webdemo_shell.html |only highs-0.1-10/highs/inst/HiGHS/examples/call_highs_from_c.c | 10 highs-0.1-10/highs/inst/HiGHS/examples/tests |only highs-0.1-10/highs/inst/HiGHS/extern/doctest.h | 4 highs-0.1-10/highs/inst/HiGHS/extern/filereaderlp/reader.cpp | 2356 +++++----- highs-0.1-10/highs/inst/HiGHS/src/CMakeLists.txt | 43 highs-0.1-10/highs/inst/HiGHS/src/Highs.h | 28 highs-0.1-10/highs/inst/HiGHS/src/io/FilereaderLp.cpp | 12 highs-0.1-10/highs/inst/HiGHS/src/io/HighsIO.cpp | 4 highs-0.1-10/highs/inst/HiGHS/src/ipm/IpxWrapper.cpp | 12 highs-0.1-10/highs/inst/HiGHS/src/ipm/basiclu/lu_update.c | 6 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/basis.cc | 21 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/crossover.cc | 8 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/diagonal_precond.cc | 4 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/forrest_tomlin.cc | 2 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/guess_basis.cc | 4 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/ipm.cc | 30 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/ipm.h | 7 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/iterate.cc | 18 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/lp_solver.cc | 4 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/model.cc | 98 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/normal_matrix.cc | 4 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/sparse_matrix.cc | 12 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/splitted_normal_matrix.cc | 2 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/symbolic_invert.cc | 2 highs-0.1-10/highs/inst/HiGHS/src/ipm/ipx/utils.cc | 4 highs-0.1-10/highs/inst/HiGHS/src/lp_data/HConst.h | 11 highs-0.1-10/highs/inst/HiGHS/src/lp_data/Highs.cpp | 123 highs-0.1-10/highs/inst/HiGHS/src/lp_data/HighsInfoDebug.cpp | 1 highs-0.1-10/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp | 9 highs-0.1-10/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp | 154 highs-0.1-10/highs/inst/HiGHS/src/lp_data/HighsLpUtils.h | 9 highs-0.1-10/highs/inst/HiGHS/src/lp_data/HighsModelUtils.cpp | 34 highs-0.1-10/highs/inst/HiGHS/src/lp_data/HighsModelUtils.h | 3 highs-0.1-10/highs/inst/HiGHS/src/lp_data/HighsOptions.cpp | 7 highs-0.1-10/highs/inst/HiGHS/src/lp_data/HighsOptions.h | 18 highs-0.1-10/highs/inst/HiGHS/src/lp_data/HighsRuntimeOptions.h | 11 highs-0.1-10/highs/inst/HiGHS/src/lp_data/HighsSolution.cpp | 4 highs-0.1-10/highs/inst/HiGHS/src/mip/HighsCliqueTable.cpp | 4 highs-0.1-10/highs/inst/HiGHS/src/mip/HighsCutPool.cpp | 10 highs-0.1-10/highs/inst/HiGHS/src/mip/HighsDomain.cpp | 22 highs-0.1-10/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp | 8 highs-0.1-10/highs/inst/HiGHS/src/mip/HighsMipSolver.cpp | 11 highs-0.1-10/highs/inst/HiGHS/src/mip/HighsMipSolverData.cpp | 18 highs-0.1-10/highs/inst/HiGHS/src/mip/HighsNodeQueue.cpp | 2 highs-0.1-10/highs/inst/HiGHS/src/mip/HighsObjectiveFunction.cpp | 4 highs-0.1-10/highs/inst/HiGHS/src/mip/HighsSearch.cpp | 5 highs-0.1-10/highs/inst/HiGHS/src/mip/HighsTableauSeparator.cpp | 4 highs-0.1-10/highs/inst/HiGHS/src/parallel/HighsSplitDeque.h | 2 highs-0.1-10/highs/inst/HiGHS/src/parallel/HighsTaskExecutor.h | 2 highs-0.1-10/highs/inst/HiGHS/src/presolve/HPresolve.cpp | 169 highs-0.1-10/highs/inst/HiGHS/src/presolve/HighsSymmetry.cpp | 26 highs-0.1-10/highs/inst/HiGHS/src/presolve/ICrash.cpp | 4 highs-0.1-10/highs/inst/HiGHS/src/presolve/ICrashUtil.cpp | 2 highs-0.1-10/highs/inst/HiGHS/src/presolve/ICrashX.cpp | 5 highs-0.1-10/highs/inst/HiGHS/src/qpsolver/basis.cpp | 10 highs-0.1-10/highs/inst/HiGHS/src/qpsolver/crashsolution.hpp | 1 highs-0.1-10/highs/inst/HiGHS/src/qpsolver/dantzigpricing.hpp | 2 highs-0.1-10/highs/inst/HiGHS/src/qpsolver/devexharrispricing.hpp | 2 highs-0.1-10/highs/inst/HiGHS/src/qpsolver/devexpricing.hpp | 2 highs-0.1-10/highs/inst/HiGHS/src/qpsolver/factor.hpp | 87 highs-0.1-10/highs/inst/HiGHS/src/qpsolver/feasibility.hpp | 1 highs-0.1-10/highs/inst/HiGHS/src/qpsolver/feasibility_highs.hpp | 6 highs-0.1-10/highs/inst/HiGHS/src/qpsolver/feasibility_quass.hpp | 1 highs-0.1-10/highs/inst/HiGHS/src/qpsolver/quass.cpp | 41 highs-0.1-10/highs/inst/HiGHS/src/qpsolver/scaling.cpp | 5 highs-0.1-10/highs/inst/HiGHS/src/qpsolver/steepestedgepricing.hpp | 2 highs-0.1-10/highs/inst/HiGHS/src/simplex/HEkk.cpp | 29 highs-0.1-10/highs/inst/HiGHS/src/simplex/HEkk.h | 2 highs-0.1-10/highs/inst/HiGHS/src/simplex/HEkkDual.cpp | 31 highs-0.1-10/highs/inst/HiGHS/src/simplex/HEkkPrimal.cpp | 16 highs-0.1-10/highs/inst/HiGHS/src/simplex/HSimplexNlaFreeze.cpp | 6 highs-0.1-10/highs/inst/HiGHS/src/simplex/HSimplexReport.cpp | 16 highs-0.1-10/highs/inst/HiGHS/src/util/HFactor.cpp | 2 highs-0.1-10/highs/inst/HiGHS/src/util/HFactorExtend.cpp | 3 highs-0.1-10/highs/inst/HiGHS/src/util/HFactorUtils.cpp | 2 highs-0.1-10/highs/inst/HiGHS/src/util/HVectorBase.cpp | 2 highs-0.1-10/highs/inst/HiGHS/src/util/HighsDisjointSets.h | 12 highs-0.1-10/highs/inst/HiGHS/src/util/HighsHash.h | 21 highs-0.1-10/highs/inst/HiGHS/src/util/HighsHashTree.h | 24 highs-0.1-10/highs/inst/HiGHS/src/util/HighsMatrixUtils.cpp | 14 highs-0.1-10/highs/inst/build_highs.sh | 1 highs-0.1-10/highs/man/highs_control.Rd |only highs-0.1-10/highs/man/highs_model.Rd |only highs-0.1-10/highs/man/highs_solve.Rd | 5 highs-0.1-10/highs/man/highs_solver.Rd |only highs-0.1-10/highs/src/Makevars.in | 2 highs-0.1-10/highs/src/RcppExports.cpp | 321 + highs-0.1-10/highs/src/highs_interface.cpp | 319 + highs-0.1-6/highs/inst/HiGHS/src/interfaces |only 104 files changed, 3434 insertions(+), 1979 deletions(-)
Title: Semi-Supervised Bayesian Mixture Models Incorporating Batch
Correction
Description: Semi-supervised and unsupervised Bayesian mixture models that
simultaneously infer the cluster/class structure and a batch correction.
Densities available are the multivariate normal and the multivariate t.
The model sampler is implemented in C++. This package is aimed at analysis of
low-dimensional data generated across several batches. See Coleman et al.
(2022) <doi:10.1101/2022.01.14.476352> for details of the model.
Author: Stephen Coleman [aut, cre],
Paul Kirk [aut],
Chris Wallace [aut]
Maintainer: Stephen Coleman <stcolema@tcd.ie>
Diff between batchmix versions 1.0.1 dated 2022-06-21 and 2.0.0 dated 2023-05-16
DESCRIPTION | 14 MD5 | 198 ++++++------ NAMESPACE | 9 R/RcppExports.R | 107 ++++++ R/batchSemiSupervisedMixtureModel.R | 185 ++++++----- R/batchmix-package.R | 53 +-- R/calcAllocProb.R | 47 +- R/catch-routine-registration.R | 2 R/checkDataGenerationInputs.R | 52 +-- R/checkProposalWindows.R | 12 R/collectAcceptanceRates.R | 63 ++- R/continueChain.R | 64 ++-- R/continueChains.R | 8 R/generateBatchData.R | 31 - R/generateBatchDataLogPoisson.R |only R/generateBatchDataMVT.R | 38 +- R/generateBatchDataVaryingRepresentation.R | 27 - R/generateGroupIDsInSimulator.R | 20 - R/generateInitialLabels.R | 19 - R/getLikelihood.R | 4 R/getSampledBatchScale.R | 44 +- R/getSampledBatchShift.R | 48 +-- R/getSampledClusterMeans.R | 13 R/plotAcceptanceRates.R | 44 +- R/plotLikelihoods.R | 36 +- R/plotSampledBatchMeans.R | 30 - R/plotSampledBatchScales.R | 24 - R/plotSampledClusterMeans.R | 7 R/plotSampledParameter.R | 31 + R/predictClass.R | 51 +-- R/predictFromMultipleChains.R |only R/prepareInitialParameters.R | 3 R/processMCMCChain.R | 238 ++++++++------- R/processMCMCChains.R | 78 ++-- R/rStickBreakingPrior.R | 4 R/runBatchMix.R | 18 - R/runMCMCChains.R | 22 - README.md | 27 + build/vignette.rds |binary inst/doc/batchmix_workflow.R | 13 inst/doc/batchmix_workflow.Rmd | 13 inst/doc/batchmix_workflow.html | 411 ++++++++++---------------- man/batchSemiSupervisedMixtureModel.Rd | 60 ++- man/batchmix-package.Rd | 31 + man/calcAllocProb.Rd | 9 man/checkDataGenerationInputs.Rd | 7 man/checkProposalWindows.Rd | 12 man/collectAcceptanceRates.Rd | 26 - man/continueChain.Rd | 6 man/generateBatchData.Rd | 4 man/generateBatchDataLogPoisson.Rd |only man/generateBatchDataMVT.Rd | 4 man/generateBatchDataVaryingRepresentation.Rd | 11 man/generateGroupIDsInSimulator.Rd | 8 man/generateInitialLabels.Rd | 2 man/getSampledBatchScale.Rd | 4 man/getSampledBatchShift.Rd | 8 man/plotAcceptanceRates.Rd | 16 - man/plotLikelihoods.Rd | 2 man/plotSampledBatchMeans.Rd | 2 man/plotSampledBatchScales.Rd | 2 man/plotSampledParameter.Rd | 2 man/predictClass.Rd | 28 - man/predictFromMultipleChains.Rd |only man/processMCMCChain.Rd | 53 +-- man/processMCMCChains.Rd | 58 +-- man/runBatchMix.Rd | 14 man/runMCMCChains.Rd | 12 man/sampleMVN.Rd | 6 man/sampleMVT.Rd | 6 man/sampleSemisupervisedMVN.Rd | 6 man/sampleSemisupervisedMVT.Rd | 6 src/Makevars | 7 src/Makevars.win | 2 src/RcppExports.cpp | 36 +- src/genericFunctions.cpp |only src/genericFunctions.h |only src/mvnPredictive.cpp | 6 src/mvnPredictive.h | 3 src/mvnSampler.cpp | 48 ++- src/mvnSampler.h | 24 + src/mvtPredictive.cpp | 9 src/mvtPredictive.h | 3 src/mvtSampler.cpp | 15 src/mvtSampler.h | 3 src/sampleMVN.cpp | 40 +- src/sampleMVN.h | 5 src/sampleMVT.cpp | 44 +- src/sampleMVT.h | 5 src/sampleSemisupervisedMVN.cpp | 46 +- src/sampleSemisupervisedMVN.h | 5 src/sampleSemisupervisedMVT.cpp | 42 +- src/sampleSemisupervisedMVT.h | 5 src/sampler.cpp | 4 src/sampler.h | 4 src/samplerFactory.cpp | 9 src/samplerFactory.h | 3 src/semisupervisedSamplerFactory.cpp | 9 src/semisupervisedSamplerFactory.h | 3 src/test-mvnKernels.cpp | 4 src/test-mvtKernels.cpp | 4 tests/testthat/test-pdfs.R | 40 +- vignettes/batchmix_workflow.Rmd | 13 103 files changed, 1589 insertions(+), 1365 deletions(-)
Title: Infrastructure for Computing with Basis Functions
Description: Some very simple infrastructure for basis functions.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between basefun versions 1.1-3 dated 2022-05-25 and 1.1-4 dated 2023-05-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/Bernstein.R | 11 +++++++---- inst/NEWS.Rd | 6 ++++++ src/init.c | 4 +++- 5 files changed, 24 insertions(+), 13 deletions(-)
Title: Genome Interval Arithmetic
Description: Read and manipulate genome intervals and signals. Provides
functionality similar to command-line tool suites within R, enabling
interactive analysis and visualization of genome-scale data. Riemondy
et al. (2017) <doi:10.12688/f1000research.11997.1>.
Author: Jay Hesselberth [aut] ,
Kent Riemondy [aut, cre] ,
RNA Bioscience Initiative [fnd, cph]
Maintainer: Kent Riemondy <kent.riemondy@cuanschutz.edu>
Diff between valr versions 0.6.7 dated 2023-02-18 and 0.6.8 dated 2023-05-16
DESCRIPTION | 6 MD5 | 40 ++-- NEWS.md | 8 R/bed_closest.r | 67 ++++++-- R/bed_cluster.r | 2 README.md | 4 build/vignette.rds |binary inst/doc/valr.Rmd | 2 inst/doc/valr.html | 14 - inst/include/IntervalTree.h | 8 inst/include/IntervalTree_ext.h | 75 --------- inst/include/grouped_dataframe.h | 6 man/bed_closest.Rd | 12 + src/closest.cpp | 322 +++++++++++++++++++++++++++++---------- src/init.c | 26 +-- src/merge.cpp | 54 +----- src/valr_utils.cpp | 33 ++- tests/testthat/test_closest.r | 65 ++++++- tests/testthat/test_cluster.r | 69 ++++++++ tests/testthat/test_merge.r | 58 +++++++ vignettes/valr.Rmd | 2 21 files changed, 582 insertions(+), 291 deletions(-)
Title: Optimal Analysis of Test and Rating Scale Data
Description: Develop, evaluate, and score multiple choice examinations,
psychological scales, questionnaires, and similar types of data involving
sequences of choices among one or more sets of answers.
This version of the package should be considered as brand new. Almost all
of the functions have been changed, including their argument list.
See the file NEWS.Rd in the Inst folder for more information.
Using the package does not require any formal statistical knowledge
beyond what would be provided by a first course in statistics in a
social science department. There the user would encounter the concept
of probability and how it is used to model data and make decisions,
and would become familiar with basic mathematical and statistical notation.
Most of the output is in graphical form.
Author: James Ramsay [aut, cre],
Juan Li [ctb],
Marie Wiberg [ctb],
Joakim Wallmark [ctb],
Spencer Graves [ctb]
Maintainer: James Ramsay <james.ramsay@mcgill.ca>
Diff between TestGardener versions 3.1.4 dated 2023-01-15 and 3.2.3 dated 2023-05-16
TestGardener-3.1.4/TestGardener/R/ICC.fit.R |only TestGardener-3.1.4/TestGardener/data/Quantshort_U.rda |only TestGardener-3.1.4/TestGardener/data/Quantshort_dataList.rda |only TestGardener-3.1.4/TestGardener/data/Quantshort_infoList.rda |only TestGardener-3.1.4/TestGardener/data/Quantshort_key.rda |only TestGardener-3.1.4/TestGardener/data/Quantshort_parList.rda |only TestGardener-3.1.4/TestGardener/data/SDS.txt.gz |only TestGardener-3.1.4/TestGardener/data/Ushort.txt.gz |only TestGardener-3.1.4/TestGardener/data/keyshort.txt.gz |only TestGardener-3.1.4/TestGardener/demo/Quantshort.R |only TestGardener-3.1.4/TestGardener/inst/doc/Quantshort.R |only TestGardener-3.1.4/TestGardener/inst/doc/Quantshort.Rmd |only TestGardener-3.1.4/TestGardener/inst/doc/Quantshort.html |only TestGardener-3.1.4/TestGardener/inst/doc/SDS.R |only TestGardener-3.1.4/TestGardener/inst/doc/SDS.Rmd |only TestGardener-3.1.4/TestGardener/inst/doc/SDS.html |only TestGardener-3.1.4/TestGardener/man/ICC.fit.Rd |only TestGardener-3.1.4/TestGardener/man/Quantshort_U.Rd |only TestGardener-3.1.4/TestGardener/man/Quantshort_dataList.Rd |only TestGardener-3.1.4/TestGardener/man/Quantshort_infoList.Rd |only TestGardener-3.1.4/TestGardener/man/Quantshort_key.Rd |only TestGardener-3.1.4/TestGardener/man/Quantshort_parList.Rd |only TestGardener-3.1.4/TestGardener/man/Ushort.Rd |only TestGardener-3.1.4/TestGardener/man/keyshort.Rd |only TestGardener-3.1.4/TestGardener/vignettes/Quantshort.Rmd |only TestGardener-3.1.4/TestGardener/vignettes/SDS.Rmd |only TestGardener-3.1.4/TestGardener/vignettes/SDS.txt |only TestGardener-3.1.4/TestGardener/vignettes/U_5000.txt |only TestGardener-3.1.4/TestGardener/vignettes/key_5000.txt |only TestGardener-3.2.3/TestGardener/DESCRIPTION | 14 TestGardener-3.2.3/TestGardener/MD5 | 150 +-- TestGardener-3.2.3/TestGardener/NAMESPACE | 4 TestGardener-3.2.3/TestGardener/R/Analyze.R | 35 TestGardener-3.2.3/TestGardener/R/DHfun.R | 144 +-- TestGardener-3.2.3/TestGardener/R/Hfun.R | 4 TestGardener-3.2.3/TestGardener/R/Hfuns.plot.R | 27 TestGardener-3.2.3/TestGardener/R/ICC.R |only TestGardener-3.2.3/TestGardener/R/ICC.plot.R | 472 +--------- TestGardener-3.2.3/TestGardener/R/SimulateData.R |only TestGardener-3.2.3/TestGardener/R/TestInfo_svd.R |only TestGardener-3.2.3/TestGardener/R/Wbinsmth.R | 23 TestGardener-3.2.3/TestGardener/R/Wbinsmth.plot.R | 8 TestGardener-3.2.3/TestGardener/R/Wbinsmth_nom.R |only TestGardener-3.2.3/TestGardener/R/Wpca.plot.R | 47 TestGardener-3.2.3/TestGardener/R/density_plot.R | 4 TestGardener-3.2.3/TestGardener/R/eval_surp.R |only TestGardener-3.2.3/TestGardener/R/make.dataList.R | 94 + TestGardener-3.2.3/TestGardener/R/plotCore.R |only TestGardener-3.2.3/TestGardener/R/plotICC.R |only TestGardener-3.2.3/TestGardener/R/scoreDensity.R | 6 TestGardener-3.2.3/TestGardener/R/smooth.ICC.R |only TestGardener-3.2.3/TestGardener/R/surprisal.chart.R |only TestGardener-3.2.3/TestGardener/R/surprisal.curve.R |only TestGardener-3.2.3/TestGardener/R/testscore.R | 4 TestGardener-3.2.3/TestGardener/R/theta.distn.R | 21 TestGardener-3.2.3/TestGardener/R/theta2arclen.R | 36 TestGardener-3.2.3/TestGardener/R/thetasearch.R | 68 - TestGardener-3.2.3/TestGardener/build/vignette.rds |binary TestGardener-3.2.3/TestGardener/data/Quant_13B_problem_U.rda |only TestGardener-3.2.3/TestGardener/data/Quant_13B_problem_U.txt.gz |only TestGardener-3.2.3/TestGardener/data/Quant_13B_problem_dataList.rda |only TestGardener-3.2.3/TestGardener/data/Quant_13B_problem_infoList.rda |only TestGardener-3.2.3/TestGardener/data/Quant_13B_problem_key.rda |only TestGardener-3.2.3/TestGardener/data/Quant_13B_problem_key.txt.gz |only TestGardener-3.2.3/TestGardener/data/Quant_13B_problem_parList.rda |only TestGardener-3.2.3/TestGardener/demo/00Index | 4 TestGardener-3.2.3/TestGardener/demo/Quant_13B_problem.R |only TestGardener-3.2.3/TestGardener/demo/SDS.R | 16 TestGardener-3.2.3/TestGardener/inst/doc/Quant_13B_problem.R |only TestGardener-3.2.3/TestGardener/inst/doc/Quant_13B_problem.Rmd |only TestGardener-3.2.3/TestGardener/inst/doc/Quant_13B_problem.html |only TestGardener-3.2.3/TestGardener/man/Analyze.Rd | 3 TestGardener-3.2.3/TestGardener/man/ArcLength.plot.Rd | 17 TestGardener-3.2.3/TestGardener/man/DHfun.Rd | 6 TestGardener-3.2.3/TestGardener/man/Entropy.plot.Rd | 6 TestGardener-3.2.3/TestGardener/man/Hcurve.Rd | 6 TestGardener-3.2.3/TestGardener/man/Hfun.Rd | 6 TestGardener-3.2.3/TestGardener/man/Hfuns.plot.Rd | 12 TestGardener-3.2.3/TestGardener/man/ICC.Rd |only TestGardener-3.2.3/TestGardener/man/ICC.plot.Rd | 49 - TestGardener-3.2.3/TestGardener/man/Power.plot.Rd | 6 TestGardener-3.2.3/TestGardener/man/Quant_13B_problem_U.Rd |only TestGardener-3.2.3/TestGardener/man/Quant_13B_problem_dataList.Rd |only TestGardener-3.2.3/TestGardener/man/Quant_13B_problem_infoList.Rd |only TestGardener-3.2.3/TestGardener/man/Quant_13B_problem_key.Rd |only TestGardener-3.2.3/TestGardener/man/Quant_13B_problem_parList.Rd |only TestGardener-3.2.3/TestGardener/man/SDS.Rd | 4 TestGardener-3.2.3/TestGardener/man/SDS_infoList.Rd | 4 TestGardener-3.2.3/TestGardener/man/Sensitivity.plot.Rd | 6 TestGardener-3.2.3/TestGardener/man/SimulateData.Rd |only TestGardener-3.2.3/TestGardener/man/TestInfo_svd.Rd |only TestGardener-3.2.3/TestGardener/man/Wbinsmth.Rd | 64 - TestGardener-3.2.3/TestGardener/man/Wbinsmth_nom.Rd |only TestGardener-3.2.3/TestGardener/man/Wpca.plot.Rd | 16 TestGardener-3.2.3/TestGardener/man/density_plot.Rd | 10 TestGardener-3.2.3/TestGardener/man/entropies.Rd | 4 TestGardener-3.2.3/TestGardener/man/eval_surp.Rd |only TestGardener-3.2.3/TestGardener/man/make.dataList.Rd | 26 TestGardener-3.2.3/TestGardener/man/plotCore.Rd |only TestGardener-3.2.3/TestGardener/man/plotICC.Rd |only TestGardener-3.2.3/TestGardener/man/scoreDensity.Rd | 6 TestGardener-3.2.3/TestGardener/man/smooth.ICC.Rd |only TestGardener-3.2.3/TestGardener/man/testscore.Rd | 6 TestGardener-3.2.3/TestGardener/man/theta.distn.Rd | 23 TestGardener-3.2.3/TestGardener/man/theta2arclen.Rd | 8 TestGardener-3.2.3/TestGardener/man/thetasearch.Rd | 14 TestGardener-3.2.3/TestGardener/vignettes/Quant_13B_problem.Rmd |only TestGardener-3.2.3/TestGardener/vignettes/Quant_13B_problem_U.txt |only TestGardener-3.2.3/TestGardener/vignettes/Quant_13B_problem_key.txt |only 109 files changed, 629 insertions(+), 854 deletions(-)
Title: Setup, Run and Analyze 'NetLogo' Model Simulations from 'R' via
'XML'
Description: Setup, run and analyze 'NetLogo' (<https://ccl.northwestern.edu/netlogo/>) model simulations in 'R'.
'nlrx' experiments use a similar structure as 'NetLogos' Behavior Space experiments.
However, 'nlrx' offers more flexibility and additional tools for running and analyzing complex simulation designs and sensitivity analyses.
The user defines all information that is needed in an intuitive framework, using class objects.
Experiments are submitted from 'R' to 'NetLogo' via 'XML' files that are dynamically written, based on specifications defined by the user.
By nesting model calls in future environments, large simulation design with many runs can be executed in parallel.
This also enables simulating 'NetLogo' experiments on remote high performance computing machines.
In order to use this package, 'Java' and 'NetLogo' (>= 5.3.1) need to be available on the executing system.
Author: Jan Salecker [aut] ,
Marco Sciaini [aut] ,
Marina Papadopoulou [rev] ,
Sebastian Hanss [cre]
Maintainer: Sebastian Hanss <nlrx@mailbox.org>
Diff between nlrx versions 0.4.3 dated 2021-09-20 and 0.4.4 dated 2023-05-16
DESCRIPTION | 14 MD5 | 74 +-- NAMESPACE | 2 NEWS.md | 42 + R/class_constr.R | 16 R/download_netlogo.R | 169 ++++--- R/print_nl.R | 2 R/run_nl.R | 7 R/simdesign_helper.R | 8 R/test_nlrx.R | 6 R/util_runnl.R | 56 +- README.md | 60 +- build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 12 inst/doc/abc.html | 461 ++++++++++++++++--- inst/doc/furthernotes.Rmd | 20 inst/doc/furthernotes.html | 650 +++++++++++++++++++++++----- inst/doc/getstarted.Rmd | 2 inst/doc/getstarted.html | 477 +++++++++++++++++--- inst/doc/optimization.html | 458 ++++++++++++++++--- inst/doc/sensitivity.html | 439 +++++++++++++++--- inst/doc/simdesign-examples.Rmd | 2 inst/doc/simdesign-examples.html | 413 ++++++++++++++--- man/check_netlogo_version.Rd |only man/download_netlogo.Rd | 19 man/experiment.Rd | 8 man/nlrx-package.Rd | 30 - man/run_nl_all.Rd | 5 man/simdesign.Rd | 2 man/simdesign_ABCmcmc_Marjoram.Rd | 4 man/simdesign_ABCmcmc_Marjoram_original.Rd | 2 man/simdesign_ABCmcmc_Wegmann.Rd | 2 man/supported_netlogo_versions.Rd |only man/util_create_agentset_reporter.Rd |only tests/testthat/test-util_download_netlogo.R | 127 ----- tests/testthat/test-util_runnl.R | 6 vignettes/furthernotes.Rmd | 20 vignettes/getstarted.Rmd | 2 vignettes/simdesign-examples.Rmd | 2 40 files changed, 2789 insertions(+), 830 deletions(-)
Title: Functions for Community Data and Ordinations
Description: A collection of functions useful in (vegetation) community analyses and ordinations. Includes automatic species selection for ordination diagrams, NMDS stress/scree plots, species response curves and rank-abundance curves as well as calculation and sorting of synoptic tables.
Author: Friedemann von Lampe [aut, cre],
Jenny Schellenberg [aut]
Maintainer: Friedemann von Lampe <fvonlampe@uni-goettingen.de>
Diff between goeveg versions 0.6.1 dated 2023-05-04 and 0.6.4 dated 2023-05-16
DESCRIPTION | 10 ++++---- MD5 | 24 +++++++++++--------- NAMESPACE | 2 + NEWS.md | 11 +++++++++ R/data_schedenenv.r | 1 R/deg2rad.r |only R/ordiselect.r | 7 +++-- R/specresponse.R | 61 ++++++++++++++++++++++++++++++---------------------- build/partial.rdb |binary data/schedenenv.rda |binary man/deg2rad.Rd |only man/ordiselect.Rd | 7 +++-- man/schedenenv.Rd | 1 man/specresponse.Rd | 9 +++++-- 14 files changed, 83 insertions(+), 50 deletions(-)
Title: Convert Data from and to 'GeoJSON' or 'TopoJSON'
Description: Convert data to 'GeoJSON' or 'TopoJSON' from various R
classes, including vectors, lists, data frames, shape files, and
spatial classes. 'geojsonio' does not aim to replace packages like
'sp', 'rgdal', 'rgeos', but rather aims to be a high level client to
simplify conversions of data from and to 'GeoJSON' and 'TopoJSON'.
Author: Scott Chamberlain [aut],
Andy Teucher [aut],
Michael Mahoney [aut, cre]
Maintainer: Michael Mahoney <mike.mahoney.218@gmail.com>
Diff between geojsonio versions 0.11.0 dated 2023-03-08 and 0.11.1 dated 2023-05-16
geojsonio-0.11.0/geojsonio/R/defunct.R |only geojsonio-0.11.0/geojsonio/R/lint.R |only geojsonio-0.11.0/geojsonio/R/validate.R |only geojsonio-0.11.0/geojsonio/man/geojsonio-defunct.Rd |only geojsonio-0.11.0/geojsonio/man/lint-defunct.Rd |only geojsonio-0.11.0/geojsonio/man/validate-defunct.Rd |only geojsonio-0.11.1/geojsonio/DESCRIPTION | 10 +++++----- geojsonio-0.11.1/geojsonio/MD5 | 20 +++++++------------- geojsonio-0.11.1/geojsonio/NAMESPACE | 2 -- geojsonio-0.11.1/geojsonio/NEWS.md | 4 ++++ geojsonio-0.11.1/geojsonio/R/as_spatial_methods.R | 1 - geojsonio-0.11.1/geojsonio/R/deprecated.R | 8 ++++---- geojsonio-0.11.1/geojsonio/R/geojson_read.R | 4 ---- geojsonio-0.11.1/geojsonio/man/geojson_read.Rd | 7 ------- 14 files changed, 20 insertions(+), 36 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-20 0.1.1
2015-09-05 0.1.0
Title: Virtual Arrays
Description: The base class 'VirtualArray' is defined, which acts as a wrapper around lists allowing users to fold arbitrary sequential data into n-dimensional, R-style virtual arrays. The derived 'XArray' class is defined to be used for homogeneous lists that contain a single class of objects. The 'RasterArray' and 'SfArray' classes enable the use of stacked spatial data instead of lists.
Author: Adam T. Kocsis [cre, aut] ,
Deutsche Forschungsgemeinschaft [fnd],
FAU GeoZentrum Nordbayern [fnd]
Maintainer: Adam T. Kocsis <adam.t.kocsis@gmail.com>
Diff between via versions 0.1.0 dated 2023-03-15 and 0.2.0 dated 2023-05-16
via-0.1.0/via/R/SfArray-sf.R |only via-0.2.0/via/DESCRIPTION | 13 +-- via-0.2.0/via/MD5 | 53 +++++++------ via-0.2.0/via/NAMESPACE | 16 +++- via-0.2.0/via/NEWS.md | 15 +++ via-0.2.0/via/R/RasterArray-base.R | 8 +- via-0.2.0/via/R/SfArray-base.R | 72 ------------------ via-0.2.0/via/R/SfcArray-base.R |only via-0.2.0/via/R/SfcArray-replace.R |only via-0.2.0/via/R/SfcArray-sf.R |only via-0.2.0/via/R/VirtualArray-subset.R | 1 via-0.2.0/via/R/XArray-base.R | 10 +- via-0.2.0/via/R/classes.R | 24 ++++-- via-0.2.0/via/R/conversions.R |only via-0.2.0/via/R/data.R | 2 via-0.2.0/via/R/generics.R | 15 ++- via-0.2.0/via/R/utility.R | 51 ++++++++++++ via-0.2.0/via/R/zzz.R | 2 via-0.2.0/via/data/exemplar.RData |binary via-0.2.0/via/data/paleocoastlines.RData |binary via-0.2.0/via/inst/tinytest/SfArray_objects.R | 2 via-0.2.0/via/inst/tinytest/test_SfArray_base.R | 2 via-0.2.0/via/inst/tinytest/test_SfArray_conversion.R |only via-0.2.0/via/man/SfArray-class.Rd | 16 ++-- via-0.2.0/via/man/coercion.Rd |only via-0.2.0/via/man/figures/logo.png |binary via-0.2.0/via/man/paleocoastlines.Rd | 2 via-0.2.0/via/man/replacementSingle.Rd | 5 + via-0.2.0/via/man/st_bbox.Rd | 10 +- via-0.2.0/via/man/st_crs.Rd | 6 - via-0.2.0/via/man/st_transform.Rd | 12 +-- 31 files changed, 186 insertions(+), 151 deletions(-)
Title: Parallel Simulation Studies
Description: Perform flexible simulation studies using one or multiple computer cores.
The package is set up to be usable on high-performance clusters in addition
to being run locally, see examples on <https://github.com/SachaEpskamp/parSim>.
Author: Sacha Epskamp
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between parSim versions 0.1.4 dated 2020-07-10 and 0.1.5 dated 2023-05-16
DESCRIPTION | 8 - MD5 | 12 +- NAMESPACE | 21 ++-- NEWS |only R/parSim.R | 300 +++++++++++++++++++++++++++++----------------------------- R/parSim_dt.R |only README.md | 170 ++++++++++++++++---------------- man/parSim.Rd | 261 ++++++++++++++++++++++++++------------------------ 8 files changed, 394 insertions(+), 378 deletions(-)
Title: Multi-Level Vector Autoregression
Description: Estimates the multi-level vector autoregression model on time-series data.
Three network structures are obtained: temporal networks, contemporaneous
networks and between-subjects networks.
Author: Sacha Epskamp [aut, cre],
Marie K. Deserno [aut],
Laura F. Bringmann [aut],
Myrthe Veenman [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between mlVAR versions 0.5 dated 2021-10-25 and 0.5.1 dated 2023-05-16
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS | 3 +++ R/Mplus.R | 2 +- R/effects.R | 8 ++++---- R/importMplus.R | 2 +- R/lmer_murmur.R | 4 ++-- R/mlVAR.R | 11 +---------- R/mlVAR0.R | 4 ++-- R/mlVARcompare.R | 6 +++--- R/mlVARsamplesize.R | 8 +++++++- R/movingWindow.R | 12 ++++++------ R/parSim.R | 2 +- 13 files changed, 46 insertions(+), 46 deletions(-)
Title: Graphical VAR for Experience Sampling Data
Description: Estimates within and between time point interactions in experience sampling data, using the Graphical vector autoregression model in combination with regularization. See also Epskamp, Waldorp, Mottus & Borsboom (2018) <doi:10.1080/00273171.2018.1454823>.
Author: Sacha Epskamp [aut, cre],
Eren Asena [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between graphicalVAR versions 0.3 dated 2021-10-19 and 0.3.1 dated 2023-05-16
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS | 6 +++++- R/dataPrep.R | 26 ++++++++++++++++---------- man/mlGraphicalVAR.Rd | 12 ++++++------ src/Makevars | 6 +++--- src/Makevars.win | 6 +++--- src/RcppExports.cpp | 5 +++++ 8 files changed, 48 insertions(+), 33 deletions(-)
Title: Functions for Declared Missing Values
Description: A zero dependency package containing functions to declare labels
and missing values, coupled with associated functions to create (weighted)
tables of frequencies and various other summary measures.
Some of the base functions have been rewritten to make use of the specific
information about the missing values, most importantly to distinguish
between empty and declared missing values.
Some functions have similar functionality with the corresponding ones from
packages "haven" and "labelled". The aim is to ensure as much compatibility
as possible with these packages, while offering an alternative in the
objects of class "declared".
Author: Adrian Dusa [aut, cre, cph] ,
Daniel Antal [ctb]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between declared versions 0.20 dated 2023-03-03 and 0.21 dated 2023-05-16
DESCRIPTION | 12 MD5 | 90 ++-- NAMESPACE | 6 R/class_methods.R | 39 + R/declared.R | 12 R/declared_package.R | 4 R/drop_undeclare.R | 2 R/internals.R | 9 R/labels.R | 52 +- R/onLoad.R | 2 R/print.R | 35 + R/validate_declared.R | 2 R/w_IQR.R |only R/w_fivenum.R |only R/w_table.R | 2 build/vignette.rds |binary inst/ChangeLog | 13 inst/WORDLIST | 5 inst/doc/a_Declared_solution.Rmd | 4 inst/doc/a_Declared_solution.html | 211 +++++----- inst/doc/b_Added_value.Rmd | 6 inst/doc/b_Added_value.html | 473 +++++++++++------------ inst/doc/c_Weighting.R | 2 inst/doc/c_Weighting.Rmd | 6 inst/doc/c_Weighting.html | 237 +++++------ man/declared_package.Rd | 4 man/drop_undeclare.Rd | 2 man/labels.Rd | 7 man/weighted.Rd | 24 - tests/testthat/_snaps/R4.2aarch64-apple-darwin20 |only tests/testthat/_snaps/R4.3aarch64-apple-darwin20 |only tests/testthat/_snaps/declared.md | 30 + tests/testthat/_snaps/internals.md | 29 - tests/testthat/_snaps/labels.md | 42 +- tests/testthat/_snaps/onLoad.md | 8 tests/testthat/_snaps/print.md | 37 + tests/testthat/_snaps/w_IQR.md |only tests/testthat/_snaps/w_fivenum.md |only tests/testthat/test-class_methods.R | 19 tests/testthat/test-declared.R | 37 + tests/testthat/test-haven.R | 8 tests/testthat/test-internals.R | 12 tests/testthat/test-labels.R | 15 tests/testthat/test-onLoad.R | 2 tests/testthat/test-print.R | 14 tests/testthat/test-w_IQR.R |only tests/testthat/test-w_fivenum.R |only vignettes/a_Declared_solution.Rmd | 4 vignettes/b_Added_value.Rmd | 6 vignettes/c_Weighting.Rmd | 6 50 files changed, 898 insertions(+), 632 deletions(-)
Title: Bayesian Inference for Directed Acyclic Graphs
Description: Implementation of a collection of MCMC methods for Bayesian structure learning
of directed acyclic graphs (DAGs), both from continuous and discrete data. For efficient
inference on larger DAGs, the space of DAGs is pruned according to the data. To filter
the search space, the algorithm employs a hybrid approach, combining constraint-based
learning with search and score. A reduced search space is initially defined on the basis
of a skeleton obtained by means of the PC-algorithm, and then iteratively improved with
search and score. Search and score is then performed following two approaches:
Order MCMC, or Partition MCMC.
The BGe score is implemented for continuous data and the BDe score is implemented
for binary data or categorical data. The algorithms may provide the maximum a posteriori
(MAP) graph or a sample (a collection of DAGs) from the posterior distribution given the data.
All algorithms are also applicable for structure learning and sampling for dynamic Bayesian networks.
Refe [...truncated...]
Author: Polina Suter [aut, cre], Jack Kuipers [aut]
Maintainer: Polina Suter <polina.suter@gmail.com>
Diff between BiDAG versions 2.1.3 dated 2023-01-23 and 2.1.4 dated 2023-05-16
BiDAG-2.1.3/BiDAG/R/wrappers.R |only BiDAG-2.1.4/BiDAG/DESCRIPTION | 6 +-- BiDAG-2.1.4/BiDAG/MD5 | 27 +++++++------ BiDAG-2.1.4/BiDAG/R/iterativeMCMC.R | 2 - BiDAG-2.1.4/BiDAG/R/learnBN.R |only BiDAG-2.1.4/BiDAG/R/main.R | 7 ++- BiDAG-2.1.4/BiDAG/R/orderMCMCmain.R | 3 + BiDAG-2.1.4/BiDAG/R/sampleBN.R |only BiDAG-2.1.4/BiDAG/R/scoreagainstdag.R | 60 +++++++++++++++++++++++++++++-- BiDAG-2.1.4/BiDAG/man/DAGscore.Rd | 2 - BiDAG-2.1.4/BiDAG/man/iterativeMCMC.Rd | 2 + BiDAG-2.1.4/BiDAG/man/learnBN.Rd | 12 +++--- BiDAG-2.1.4/BiDAG/man/orderMCMC.Rd | 2 + BiDAG-2.1.4/BiDAG/man/partitionMCMC.Rd | 4 +- BiDAG-2.1.4/BiDAG/man/sampleBN.Rd | 14 +++++-- BiDAG-2.1.4/BiDAG/man/scoreagainstDAG.Rd | 5 ++ 16 files changed, 112 insertions(+), 34 deletions(-)
Title: ARDL, ECM and Bounds-Test for Cointegration
Description: Creates complex autoregressive distributed lag (ARDL) models and
constructs the underlying unrestricted and restricted error correction
model (ECM) automatically, just by providing the order. It also performs
the bounds-test for cointegration as described in Pesaran et al. (2001)
<doi:10.1002/jae.616> and provides the multipliers and the cointegrating
equation. The validity and the accuracy of this package have been verified
by successfully replicating the results of Pesaran et al. (2001) in
Natsiopoulos and Tzeremes (2022) <doi:10.1002/jae.2919>.
Author: Kleanthis Natsiopoulos [aut, cre]
,
Nickolaos Tzeremes [aut]
Maintainer: Kleanthis Natsiopoulos <klnatsio@gmail.com>
Diff between ARDL versions 0.2.2 dated 2023-02-09 and 0.2.3 dated 2023-05-16
DESCRIPTION | 11 +- MD5 | 41 +++++---- NAMESPACE | 3 NEWS.md | 23 +++++ R/ardl.R | 2 R/coint_eq.R | 20 ---- R/multipliers.R | 56 ++++++++++-- R/plot_delay.R |only R/plot_lr.R |only R/recm.R | 6 - R/to_lm.R |only R/uecm.R | 6 - README.md | 89 +++++++++++++------- man/ardl.Rd | 2 man/coint_eq.Rd | 20 ---- man/figures/README-Convert-to-lm-and-forecast-1.png |only man/figures/README-lr-plot-1.png |binary man/figures/README-unnamed-chunk-4-1.png |only man/multipliers.Rd | 26 ++++- man/plot_delay.Rd |only man/plot_lr.Rd |only man/recm.Rd | 6 - man/to_lm.Rd |only man/uecm.Rd | 6 - tests/testthat/test-multipliers.R | 47 ++++++++++ tests/testthat/test-to_lm.R |only 26 files changed, 249 insertions(+), 115 deletions(-)
Title: Power Analyses for SEM
Description: Provides a-priori, post-hoc, and compromise power-analyses
for structural equation models (SEM).
Author: Morten Moshagen [aut, cre] ,
Martina Bader [aut]
Maintainer: Morten Moshagen <morten.moshagen@uni-ulm.de>
Diff between semPower versions 2.0.0 dated 2023-05-15 and 2.0.1 dated 2023-05-16
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS |only R/simulate.R | 2 +- R/zUnitTests.R | 2 +- build/vignette.rds |binary 6 files changed, 10 insertions(+), 9 deletions(-)
Title: Load Data from Facebook API Marketing
Description: Load data by campaigns, ads, ad sets and insights, ad account and business manager
from Facebook Marketing API into R. For more details see official documents by Facebook
Marketing API <https://developers.facebook.com/docs/marketing-apis/>.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rfacebookstat versions 2.9.2 dated 2023-04-20 and 2.9.3 dated 2023-05-16
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/rfacebookstat-get-statistics.Rmd | 3 --- inst/doc/rfacebookstat-get-statistics.html | 8 -------- vignettes/rfacebookstat-get-statistics.Rmd | 3 --- 8 files changed, 14 insertions(+), 24 deletions(-)
Title: Where Expectations Meet Reality: Realistic Unit Testing
Description: A framework for unit testing for realistic minimalists,
where we distinguish between expected, acceptable, current, fallback,
ideal, or regressive behaviour. It can also be used for monitoring
third-party software projects for changes.
Author: Marek Gagolewski [aut, cre, cph]
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between realtest versions 0.2.1 dated 2021-06-17 and 0.2.3 dated 2023-05-16
DESCRIPTION | 16 ++++--- MD5 | 44 ++++++++++---------- NEWS | 17 +++++-- R/E.R | 14 +++--- R/P.R | 13 +++-- R/R.R | 87 ++++++++++++++++++++++++++-------------- R/about_realtest.R | 3 - R/comparers.R | 11 ++--- R/postprocessors.R | 6 +- R/tools.R | 30 +++++-------- R/validators.R | 2 inst/CITATION | 2 inst/realtest/realtest-basic.R | 6 +- inst/realtest/realtest-named.R | 2 man/E.Rd | 6 +- man/P.Rd | 11 ++--- man/R.Rd | 22 +++++----- man/comparers.Rd | 8 +-- man/postprocessors.Rd | 4 - man/source2.Rd | 2 man/summary.realtest_results.Rd | 14 ++---- man/test_dir.Rd | 10 +--- tests/realtest.R | 2 23 files changed, 183 insertions(+), 149 deletions(-)
Title: Operations Research LOCational Analysis Models
Description: Objects and methods to handle and solve the min-sum location problem, also known as Fermat-Weber problem. The min-sum location problem search for a point such that the weighted sum of the distances to the demand points are minimized. See "The Fermat-Weber location problem revisited" by Brimberg, Mathematical Programming, 1, pg. 71-76, 1995. <DOI:10.1007/BF01592245>.
General global optimization algorithms are used to solve the problem, along with the adhoc Weiszfeld method, see "Sur le point pour lequel la Somme des distances de n points donnes est minimum", by Weiszfeld, Tohoku Mathematical Journal, First Series, 43, pg. 355-386, 1937 or "On the point for which the sum of the distances to n given points is minimum", by E. Weiszfeld and F. Plastria, Annals of Operations Research, 167, pg. 7-41, 2009. <DOI:10.1007/s10479-008-0352-z>.
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between orloca versions 4.10 dated 2020-09-27 and 5.3 dated 2023-05-16
ChangeLog | 9 +++ DESCRIPTION | 19 ++++--- MD5 | 64 +++++++++++++----------- NAMESPACE | 3 + R/as.R | 53 ++++++++++---------- R/distsumlpmin.R | 2 R/distsummin.R | 2 R/loca.p.R | 97 ++++++++++++++++++++---------------- R/orloca-package.R | 16 +++--- R/persp.loca.p.R | 56 +++++++++++++-------- R/plot.loca.p.R | 34 +++++++++--- R/rloca.p.R | 5 - build/partial.rdb |only build/vignette.rds |binary inst/doc/index.R |only inst/doc/index.Rmd |only inst/doc/index.html |only inst/doc/localizacionplana.html | 67 ++++++++++++++----------- inst/doc/planarlocation.html | 67 ++++++++++++++----------- inst/po/es/LC_MESSAGES/R-orloca.mo |binary man/as-methods.Rd | 8 +-- man/as.data.frame.loca.p.Rd | 8 +-- man/as.loca.p.Rd | 8 +-- man/as.loca.p.data.frame.Rd | 8 +-- man/as.loca.p.matrix.Rd | 8 +-- man/as.matrix.loca.p.Rd | 8 +-- man/orloca-package.Rd | 14 ++--- man/persp.loca.p.Rd | 3 + man/rloca.p.Rd | 2 po/R-orloca-es.mo |binary po/R-orloca-es.po | 98 ++++++++++++++++++++----------------- po/R-orloca.pot | 71 ++++++++------------------ tests |only vignettes/index.Rmd |only 34 files changed, 396 insertions(+), 334 deletions(-)
Title: Solvers for Maximum Weight Connected Subgraph Problem and Its
Variants
Description: Algorithms for solving various Maximum
Weight Connected Subgraph Problems, including variants with
budget constraints, cardinality constraints, weighted edges and signals.
The package represents an R interface to high-efficient solvers based on
relax-and-cut approach (Álvarez-Miranda E., Sinnl M. (2017) <doi:10.1016/j.cor.2017.05.015>)
mixed-integer programming (Loboda A., Artyomov M., and Sergushichev A. (2016) <doi:10.1007/978-3-319-43681-4_17>)
and simulated annealing.
Author: Alexander Loboda [aut, cre],
Nikolay Poperechnyi [aut],
Eduardo Alvarez-Miranda [aut],
Markus Sinnl [aut],
Alexey Sergushichev [aut],
Paul Hosler Jr. [cph] ,
www.hamcrest.org [cph] ,
Barak Naveh and Contributors [cph] ,
The Apache Software Foundation [...truncated...]
Maintainer: Alexander Loboda <aleks.loboda@gmail.com>
Diff between mwcsr versions 0.1.6 dated 2022-07-12 and 0.1.7 dated 2023-05-16
DESCRIPTION | 10 MD5 | 38 +-- R/solvers.R | 4 R/virgo.R | 16 + README.md | 5 build/partial.rdb |binary build/vignette.rds |binary inst/doc/tutorial.html | 445 +++++++++++++++++++++---------------------- inst/java/virgo-solver.jar |binary man/bionet_example.Rd | 2 man/gatom_example.Rd | 2 man/gmwcs_example.Rd | 2 man/gmwcs_small_instance.Rd | 2 man/mwcs_example.Rd | 2 man/mwcs_small_instance.Rd | 2 man/sgmwcs_example.Rd | 2 man/sgmwcs_small_instance.Rd | 2 man/virgo_solver.Rd | 8 src/Makevars | 2 tests/testthat/test_virgo.R | 2 20 files changed, 281 insertions(+), 265 deletions(-)
Title: Bootstrap Methods for Various Network Estimation Routines
Description: Bootstrap methods to assess accuracy and stability of estimated network structures
and centrality indices <doi:10.3758/s13428-017-0862-1>. Allows for flexible
specification of any undirected network estimation procedure in R, and offers
default sets for various estimation routines.
Author: Sacha Epskamp [aut, cre],
Eiko I. Fried [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between bootnet versions 1.5 dated 2021-10-25 and 1.5.1 dated 2023-05-16
DESCRIPTION | 8 +-- MD5 | 29 +++++------ NAMESPACE | 1 NEWS | 42 +++++++++------- R/bootInclude.R | 26 +++++----- R/bootThreshold.R | 46 +++++++++--------- R/centralityCompare.R | 2 R/comparePlot.R | 99 --------------------------------------- R/netSimulator.R | 2 R/netSimulator_methods.R | 15 ++--- R/plotMethod.R | 5 - R/replicationSimulator.R | 4 - R/replicationSimulator_methods.R | 14 ++--- R/summaryMethod.R | 21 -------- README.md |only inst/CITATION | 17 +++--- 16 files changed, 105 insertions(+), 226 deletions(-)
Title: API Client for US Treasury Fiscal Data
Description: Make requests from the US Treasury Fiscal Data API endpoints.
Author: Guillermo Roditi Dominguez [aut, cre]
Maintainer: Guillermo Roditi Dominguez <guillermo@newriverinvestments.com>
Diff between ustfd versions 0.2.0 dated 2022-10-31 and 0.4.0 dated 2023-05-16
ustfd-0.2.0/ustfd/man/ustfd_endpoints.Rd |only ustfd-0.2.0/ustfd/man/ustfd_field_dictionary.Rd |only ustfd-0.2.0/ustfd/tests/testthat/json-response.txt |only ustfd-0.4.0/ustfd/DESCRIPTION | 12 + ustfd-0.4.0/ustfd/MD5 | 44 +++--- ustfd-0.4.0/ustfd/NAMESPACE | 7 - ustfd-0.4.0/ustfd/NEWS.md | 32 +++-- ustfd-0.4.0/ustfd/R/paged_request.R |only ustfd-0.4.0/ustfd/R/sysdata.rda |binary ustfd-0.4.0/ustfd/R/ustfd.R | 38 +++--- ustfd-0.4.0/ustfd/R/ustfd_apis.R |only ustfd-0.4.0/ustfd/R/ustfd_endpoints.R | 112 ++++++++++++++--- ustfd-0.4.0/ustfd/R/ustfd_query.R | 23 ++- ustfd-0.4.0/ustfd/README.md | 126 ++++++++++++-------- ustfd-0.4.0/ustfd/man/endpoint_exists.Rd |only ustfd-0.4.0/ustfd/man/ustfd_all_pages.Rd |only ustfd-0.4.0/ustfd/man/ustfd_datasets.Rd |only ustfd-0.4.0/ustfd/man/ustfd_json_response.Rd | 2 ustfd-0.4.0/ustfd/man/ustfd_query.Rd | 25 ++- ustfd-0.4.0/ustfd/man/ustfd_request.Rd | 2 ustfd-0.4.0/ustfd/man/ustfd_response_meta_object.Rd | 2 ustfd-0.4.0/ustfd/man/ustfd_response_payload.Rd | 2 ustfd-0.4.0/ustfd/man/ustfd_simple.Rd | 21 +-- ustfd-0.4.0/ustfd/man/ustfd_table_columns.Rd |only ustfd-0.4.0/ustfd/man/ustfd_tables.Rd |only ustfd-0.4.0/ustfd/tests/testthat/test-query.R | 6 ustfd-0.4.0/ustfd/tests/testthat/test-query_url.R | 2 ustfd-0.4.0/ustfd/tests/testthat/test-ustfd.R | 19 ++- 28 files changed, 318 insertions(+), 157 deletions(-)
Title: Graph Plotting Methods, Psychometric Data Visualization and
Graphical Model Estimation
Description: Fork of qgraph - Weighted network visualization and analysis, as well as Gaussian graphical model computation. See Epskamp et al. (2012) <doi:10.18637/jss.v048.i04>.
Author: Sacha Epskamp [aut, cre],
Giulio Costantini [aut],
Jonas Haslbeck [aut],
Adela Isvoranu [aut],
Angelique O. J. Cramer [ctb],
Lourens J. Waldorp [ctb],
Verena D. Schmittmann [ctb],
Denny Borsboom [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between qgraph versions 1.9.4 dated 2023-03-20 and 1.9.5 dated 2023-05-16
COPYRIGHTS | 20 DESCRIPTION | 6 MD5 | 188 NAMESPACE | 292 - NEWS | 1225 +++--- R/00PolyShapes.R | 426 +- R/Cent2EdgeNode.R | 180 R/DrawArrow.R | 162 R/EBICgraph.R | 72 R/FDRnetwork.R | 40 R/Fade.R | 44 R/IntInNode.r | 184 R/PLOT.R | 2640 ++++++------- R/RcppExports.R | 14 R/SelfLoop.R | 176 R/VARglm.R | 128 R/XKCD.R | 20 R/addTitle.R | 8 R/addTrans.R | 40 R/as_ggraph.R | 124 R/averageLayout.R | 80 R/centralityFunctions.R | 712 +-- R/centralityPlot.R | 210 - R/centralityTable.R | 240 - R/clusteringPlot.R | 220 - R/clusteringTable.R | 410 +- R/cor_auto.R | 288 - R/drawEdge.R | 184 R/drawNode.R | 584 +- R/fixnames.R | 16 R/flow.R | 246 - R/getArgs.R | 22 R/getWmat.R | 474 +- R/ggmFit.R | 572 +- R/ggmModSelect.R | 354 - R/glasso_methods.R | 482 +- R/glasso_tests.R | 434 +- R/igraphConversion.R | 106 R/isColor.R | 10 R/layout.R | 182 R/logGaus.R | 66 R/makeBW.R | 122 R/mapusr2in.R | 134 R/mixCols.R | 22 R/mixGraphs.R | 122 R/mutualInformation.R | 112 R/palettes.R | 76 R/pathways.R | 108 R/pie2.R | 138 R/printplotsummary.R | 26 R/qgraph.R | 6268 +++++++++++++++---------------- R/qgraph.rack.R | 254 - R/qgraphAnnotate.R | 154 R/qgraphD3.R | 206 - R/qgraphGUI.R | 472 +- R/qgraph_growth.R | 614 +-- R/qgraph_loadings.R | 642 +-- R/qgraph_mixed.R | 148 R/scale2.R | 14 R/smallworldIndex.R | 82 R/toJSONarray.R | 40 R/vein.R | 290 - README | 8 inst/CITATION | 44 man/CentAndClusfuns.Rd | 140 man/EBICglasso.Rd | 234 - man/FDRnetwork.Rd | 176 man/VARglm.Rd | 82 man/as.igraph.Rd | 58 man/averageLayout.Rd | 70 man/big5.Rd | 46 man/big5groups.Rd | 50 man/centrality.Rd | 152 man/centrality_auto.Rd | 122 man/clustcoef_auto.Rd | 182 man/cor_auto.Rd | 156 man/flow.Rd | 134 man/getWmat.Rd | 96 man/ggmFit.Rd | 138 man/ggmModSelect.Rd | 198 man/makeBW.Rd | 106 man/mat2vec.Rd | 54 man/mutualInformation.Rd | 62 man/pathways.Rd | 118 man/plot.qgraph.Rd | 64 man/print.qgraph.Rd | 58 man/qgraph.Rd | 1202 ++--- man/qgraph.animate.Rd | 328 - man/qgraph.layout.fruchtermanreingold.Rd | 208 - man/qgraphMixed.Rd | 104 man/qgraph_loadings.Rd | 122 man/smallworldIndex.Rd | 50 man/smallworldness.Rd | 166 man/summary.qgraph.Rd | 58 man/wi2net.Rd | 54 95 files changed, 13383 insertions(+), 13382 deletions(-)
Title: Qualitative Comparative Analysis
Description: An extensive set of functions to perform Qualitative Comparative Analysis:
crisp sets ('csQCA'), temporal ('tQCA'), multi-value ('mvQCA')
and fuzzy sets ('fsQCA'), using a GUI - graphical user interface.
'QCA' is a methodology that bridges the qualitative and quantitative
divide in social science research. It uses a Boolean minimization
algorithm, resulting in a minimal causal configuration associated
with a given phenomenon.
Author: Adrian Dusa [aut, cre, cph] ,
Ciprian Paduraru [ctb] ,
jQuery Foundation [cph] ,
jQuery contributors [ctb, cph] ,
lp_solve [cph] ,
Vasil Dinkov [ctb, cph] ,
Dmitry Baranovskiy [ctb, cph] ,
Emmanuel Quentin [ctb, cph] ,
Jimmy Breck-McKye [ctb, cph] ,
[...truncated...]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between QCA versions 3.18 dated 2023-02-03 and 3.19 dated 2023-05-16
DESCRIPTION | 7 -- MD5 | 90 +++++++++++++------------- NAMESPACE | 3 R/findRows.R | 2 R/getSolution.R | 4 - R/minimize.R | 12 +-- R/panel.R | 2 R/superSubset.R | 12 +-- R/truthTable.R | 14 +--- build/partial.rdb |binary data/HarKem.RData |binary data/d.HK.RData |binary data/d.partybans.RData |binary inst/ChangeLog | 29 ++++---- inst/gui/www/js/maincode.js | 2 inst/staticdocs/CV.html | 4 - inst/staticdocs/LegacyDatasets.html | 4 - inst/staticdocs/Lipset.html | 4 - inst/staticdocs/QCA_package.html | 8 +- inst/staticdocs/RS.html | 4 - inst/staticdocs/SOPexpressions.html | 4 - inst/staticdocs/XYplot.html | 4 - inst/staticdocs/Xplot.html | 4 - inst/staticdocs/calibrate.html | 4 - inst/staticdocs/causalChain.html | 4 - inst/staticdocs/chartFunctions.html | 4 - inst/staticdocs/export.html | 4 - inst/staticdocs/factorize.html | 4 - inst/staticdocs/findRows.html | 4 - inst/staticdocs/findTh.html | 4 - inst/staticdocs/fuzzyops.html | 4 - inst/staticdocs/generate.html | 4 - inst/staticdocs/implicantMatrixFunctions.html | 4 - inst/staticdocs/index.html | 4 - inst/staticdocs/intersection.html | 4 - inst/staticdocs/minimize.html | 4 - inst/staticdocs/modelFit.html | 4 - inst/staticdocs/negate.html | 4 - inst/staticdocs/pof.html | 4 - inst/staticdocs/retention.html | 4 - inst/staticdocs/runGUI.html | 4 - inst/staticdocs/subsetsAndSupersets.html | 4 - inst/staticdocs/truthTable.html | 4 - man/QCA_internal.Rd | 3 man/QCA_package.Rd | 4 - src/QCA.c | 33 --------- 46 files changed, 150 insertions(+), 183 deletions(-)
Title: Estimates and Plots Single-Level and Multilevel Latent Class
Models
Description: Efficiently estimates single- and multilevel latent class models with covariates, allowing for output visualization in all specifications. For more technical details, see Lyrvall et al (2023) <arXiv:2305.07276>.
Author: Roberto Di Mari [aut, cre],
Johan Lyrvall [aut],
Zsuzsa Bakk [ctb],
Jennifer Oser [ctb],
Jouni Kuha [ctb]
Maintainer: Roberto Di Mari <roberto.dimari@unict.it>
Diff between multilevLCA versions 1.1 dated 2023-03-17 and 1.2 dated 2023-05-16
DESCRIPTION | 10 MD5 | 20 R/MLCAfunctions.R | 4771 +++++++++++++++++++------------------------ R/RcppExports.R | 52 build/partial.rdb |binary man/multiLCA.Rd | 26 man/plot.multiLCA.Rd | 103 src/LCAfit.cpp | 632 +++++ src/Makevars.win |only src/RcppExports.cpp | 204 + src/multilevLC_EM.cpp | 1068 +++++++++ src/rcpparma_hello_world.cpp |only 12 files changed, 4102 insertions(+), 2784 deletions(-)
Title: Render Markdown with 'commonmark'
Description: Render Markdown to full and lightweight HTML/LaTeX documents with
the 'commonmark' package. It also supports features that are missing in
'commonmark', such as raw HTML/LaTeX blocks, LaTeX math, superscripts,
subscripts, footnotes, element attributes, appendices, and fenced 'Divs'.
With additional JavaScript and CSS, it can also create HTML slides and
articles.
Author: Yihui Xie [aut, cre] ,
JJ Allaire [aut],
Jeffrey Horner [aut],
Henrik Bengtsson [ctb],
Jim Hester [ctb],
Yixuan Qiu [ctb],
Kohske Takahashi [ctb],
Adam November [ctb],
Nacho Caballero [ctb],
Jeroen Ooms [ctb],
Thomas Leeper [ctb],
Joe Cheng [ctb],
An [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between markdown versions 1.6 dated 2023-04-07 and 1.7 dated 2023-05-16
DESCRIPTION | 12 +++--- LICENSE |only MD5 | 47 ++++++++++++------------ NEWS.md | 6 +++ R/old.R | 15 +++---- R/package.R | 2 - R/render.R | 91 +++++++++++++++++++++++------------------------- R/rmarkdown.R | 16 ++++---- R/rpubs.R | 22 +++++------ R/utils.R | 38 +++++++++----------- README.md | 46 +++++++++++++++++------- build/vignette.rds |binary inst/doc/article.html | 2 - inst/doc/intro.html | 2 - inst/doc/slides.Rmd | 2 - inst/doc/slides.html | 4 +- man/html_format.Rd | 16 ++++---- man/mark.Rd | 57 ++++++++++++------------------ man/markdown.Rd | 2 - man/markdown_options.Rd | 4 +- man/renderMarkdown.Rd | 12 ++---- man/rpubsUpload.Rd | 18 ++++----- man/smartypants.Rd | 6 +-- tests/tests.Rout.save | 4 +- vignettes/slides.Rmd | 2 - 25 files changed, 219 insertions(+), 207 deletions(-)
Title: Forecast Reconciliation
Description: Classical (bottom-up and top-down), optimal and heuristic combination forecast
point (Di Fonzo and Girolimetto, 2023) <doi:10.1016/j.ijforecast.2021.08.004> and
probabilistic (Girolimetto et al. 2023) <arXiv:2303.17277> reconciliation procedures
for cross-sectional, temporal, and cross-temporal linearly constrained time series.
Author: Daniele Girolimetto [aut, cre, fnd]
,
Tommaso Di Fonzo [aut, fnd]
Maintainer: Daniele Girolimetto <daniele.girolimetto@phd.unipd.it>
Diff between FoReco versions 0.2.5 dated 2022-07-04 and 0.2.6 dated 2023-05-16
DESCRIPTION | 26 +++--- MD5 | 111 ++++++++++++++------------ NAMESPACE | 14 +++ NEWS.md | 13 +++ R/FoReco-package.R | 11 +- R/FoReco2ts.R | 97 ++++++++++++++-------- R/FoReco_data.R | 23 +---- R/agg_ts.R |only R/bootstrap.R |only R/cstrec.R | 12 +- R/ctbu.R | 12 +- R/hts_tools.R | 3 R/htsrec.R | 13 +-- R/iterec.R | 6 - R/lccrec.R | 23 +---- R/lcmat.R | 10 +- R/oct_bounds.R | 8 - R/octrec.R | 110 ++++++++++++++++++++----- R/reco.R | 6 - R/residualsfun.R |only R/score_index.R | 12 +- R/tcsrec.R | 12 +- R/tdrec.R | 11 +- R/thfrec.R | 7 - README.md | 46 +++++----- build/FoReco.pdf |binary inst/CITATION | 61 +++++++++----- inst/doc/FoReco_package.Rmd | 2 inst/doc/FoReco_package.html | 130 ++++++++++++++++-------------- inst/doc/accuracy_indices.R | 8 - inst/doc/accuracy_indices.Rmd | 8 - inst/doc/accuracy_indices.html | 174 ++++++++++++++++++++--------------------- man/Cmatrix.Rd | 3 man/FoReco-package.Rd | 11 +- man/FoReco2ts.Rd | 44 ++++++---- man/FoReco_data.Rd | 23 +---- man/agg_ts.Rd |only man/arrange_hres.Rd |only man/boot_cs.Rd |only man/boot_ct.Rd |only man/boot_te.Rd |only man/commat.Rd | 3 man/cstrec.Rd | 12 +- man/ctbu.Rd | 10 -- man/ctf_tools.Rd | 3 man/hts_tools.Rd | 3 man/htsrec.Rd | 13 +-- man/iterec.Rd | 4 man/lccrec.Rd | 23 +---- man/lcmat.Rd | 11 +- man/oct_bounds.Rd | 11 +- man/octrec.Rd | 29 ++++-- man/residuals_matrix.Rd |only man/score_index.Rd | 15 +-- man/shrink_estim.Rd | 3 man/tcsrec.Rd | 12 +- man/tdrec.Rd | 11 +- man/thf_tools.Rd | 3 man/thfrec.Rd | 7 - vignettes/FoReco_package.Rmd | 2 vignettes/accuracy_indices.Rmd | 8 - 61 files changed, 690 insertions(+), 543 deletions(-)
Title: Likelihood Analyses for Common Statistical Tests
Description: A collection of functions that calculate the log likelihood
(support) for a range of statistical tests. Where possible the likelihood
function and likelihood interval for the observed data are displayed. The
evidential approach used here is based on the book "Likelihood" by A.W.F.
Edwards (1992, ISBN-13 : 978-0801844430), "Statistical Evidence" by R.
Royall (1997, ISBN-13 : 978-0412044113), S.N. Goodman & R. Royall
(2011) <doi:10.2105/AJPH.78.12.1568>, "Understanding
Psychology as a Science" by Z. Dienes (2008, ISBN-13 : 978-0230542310),
S. Glover & P. Dixon <https://link.springer.com/article/10.3758/BF03196706>
and others. This package accompanies "Evidence-Based Statistics" by
P. Cahusac (2020, ISBN-13 : 978-1119549802).
Author: Peter Cahusac [aut, cre]
Maintainer: Peter Cahusac <peteqsac@gmail.com>
Diff between likelihoodR versions 1.1.0 dated 2023-03-15 and 1.1.1 dated 2023-05-16
DESCRIPTION | 9 ++++--- MD5 | 16 ++++++------- NAMESPACE | 2 + R/L_1way_RM_ANOVA.R | 52 +++++++++++++++++++++++++++++++++++--------- R/L_2way_Factorial_ANOVA.R | 10 +++++++- R/L_RR.R | 13 ++++------- R/L_t_test_sample_size.R | 3 ++ man/L_1way_RM_ANOVA.Rd | 14 ++++++++--- man/L_t_test_sample_size.Rd | 3 ++ 9 files changed, 87 insertions(+), 35 deletions(-)
Title: Identification and Classification of the Most Influential Nodes
Description: Contains functions for the classification and ranking of top candidate features, reconstruction of networks from
adjacency matrices and data frames, analysis of the topology of the network
and calculation of centrality measures, and identification of the most
influential nodes. Also, a function is provided for running SIRIR model, which
is the combination of leave-one-out cross validation technique and the conventional SIR model, on a network to unsupervisedly rank the true influence of vertices. Additionally, some functions have been provided for the assessment
of dependence and correlation of two network centrality measures as well as
the conditional probability of deviation from their corresponding means in opposite direction.
Fred Viole and David Nawrocki (2013, ISBN:1490523995).
Csardi G, Nepusz T (2006). "The igraph software package for complex network research." InterJournal, Complex Systems, 1695.
Adopted algorithms and sources are referenced in function document.
Author: Abbas Salavaty [aut, cre], Mirana Ramialison [ths], Peter D. Currie [ths]
Maintainer: Adrian Salavaty <abbas.salavaty@gmail.com>
Diff between influential versions 2.2.6 dated 2022-08-06 and 2.2.7 dated 2023-05-16
DESCRIPTION | 11 MD5 | 44 +-- NAMESPACE | 1 NEWS.md | 314 ++++++++++++++----------- R/functions.R | 489 ++++++++++++++++++++++++++++----------- README.md | 30 +- build/vignette.rds |binary inst/CITATION | 3 inst/doc/Vignettes.html | 224 ++++++++--------- man/clusterRank.Rd | 17 + man/collective.influence.Rd | 14 - man/exir.Rd | 4 man/fcor.Rd | 9 man/figures/Symbol.png |binary man/h_index.Rd | 4 man/hubness.score.Rd | 5 man/influential-package.Rd | 4 man/ivi.Rd | 9 man/ivi.from.indices.Rd | 4 man/lh_index.Rd | 15 + man/neighborhood.connectivity.Rd | 9 man/sirir.Rd | 4 man/spreading.score.Rd | 7 23 files changed, 776 insertions(+), 445 deletions(-)
Title: Semi-Supervised Gaussian Mixture Model with a Missing-Data
Mechanism
Description: The algorithm of semi-supervised learning is based on finite Gaussian mixture models and includes a mechanism for handling missing data. It aims to fit a g-class Gaussian mixture model using maximum likelihood. The algorithm treats the labels of unclassified features as missing data, building on the framework introduced by Rubin (1976) <doi:10.2307/2335739> for missing data analysis. By taking into account the dependencies in the missing pattern, the algorithm provides more information for determining the optimal classifier, as specified by Bayes' rule.
Author: Ziyang Lyu [aut, cre],
Daniel Ahfock [aut],
Ryan Thompson [aut],
Geoffrey J. McLachlan [aut]
Maintainer: Ziyang Lyu <ziyang.lyu@unsw.edu.au>
Diff between gmmsslm versions 1.1.2 dated 2023-02-25 and 1.1.4 dated 2023-05-16
DESCRIPTION | 8 - MD5 | 32 ++++--- NAMESPACE | 5 + R/bayesclassifier.R | 66 +++++++++------ R/erate.R | 27 ++++-- R/get_entropy.R | 13 ++- R/gmmsslm.R | 201 +++++++++++++++++++++++++++++++++++++++++++----- R/initialvalue.R | 57 ++++++------- R/rmix.R | 1 data/gastro_data.rda |binary man/bayesclassifier.Rd | 36 ++++---- man/erate.Rd | 19 +++- man/get_entropy.Rd | 6 - man/gmmsslm.Rd | 32 ++++--- man/gmmsslmFit-class.Rd |only man/initialvalue.Rd | 4 man/paraextract.Rd |only man/predict.Rd |only man/summary.Rd |only 19 files changed, 368 insertions(+), 139 deletions(-)
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package
supports the static site generator 'Hugo' (<https://gohugo.io>) best,
and it also supports 'Jekyll' (<https://jekyllrb.com>) and 'Hexo'
(<https://hexo.io>).
Author: Yihui Xie [aut, cre] ,
Christophe Dervieux [aut] ,
Alison Presmanes Hill [aut] ,
Amber Thomas [ctb],
Beilei Bian [ctb],
Brandon Greenwell [ctb],
Brian Barkley [ctb],
Deependra Dhakal [ctb],
Eric Nantz [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb] [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 1.16 dated 2022-12-13 and 1.17 dated 2023-05-16
DESCRIPTION | 14 +++++++------- MD5 | 11 ++++++----- R/addin.R | 13 +++++++++---- R/render.R | 2 +- inst/CITATION | 27 ++++++++++----------------- man/figures/logo.png |only tests/test-cran/test-addin.R | 8 ++++---- 7 files changed, 37 insertions(+), 38 deletions(-)
Title: HIGHT Algorithm
Description: HIGHT(HIGh security and light weigHT) algorithm is a block cipher encryption algorithm developed to provide confidentiality in computing environments that demand low power consumption and lightweight, such as RFID(Radio-Frequency Identification) and USN(Ubiquitous Sensor Network), or in mobile environments that require low power consumption and lightweight, such as smartphones and smart cards. Additionally, it is designed with a simple structure that enables it to be used with basic arithmetic operations, XOR, and circular shifts in 8-bit units. This algorithm was designed to consider both safety and efficiency in a very simple structure suitable for limited environments, compared to the former 128-bit encryption algorithm SEED. In December 2010, it became an ISO(International Organization for Standardization) standard. The detailed procedure is described in Hong et al. (2006) <doi:10.1007/11894063_4>.
Author: Yongwoo Kim [aut, cre]
Maintainer: Yongwoo Kim <yw_kim@outlook.com>
Diff between hightR versions 0.2.0 dated 2023-04-17 and 0.3.0 dated 2023-05-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/hight_dec.R | 2 +- man/hight_dec.Rd | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Matching on Generalized Propensity Scores with Continuous
Exposures
Description: Provides a framework for estimating causal effects of a continuous
exposure using observational data, and implementing matching and weighting
on the generalized propensity score.
Wu, X., Mealli, F., Kioumourtzoglou, M.A., Dominici, F. and Braun, D., 2022.
Matching on generalized propensity scores with continuous exposures. Journal
of the American Statistical Association, pp.1-29.
Author: Naeem Khoshnevis [aut, cre] ,
Xiao Wu [aut] ,
Danielle Braun [aut]
Maintainer: Naeem Khoshnevis <nkhoshnevis@g.harvard.edu>
Diff between CausalGPS versions 0.3.0 dated 2023-02-15 and 0.3.1 dated 2023-05-16
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 6 ++++++ R/data.R | 2 +- build/partial.rdb |binary build/vignette.rds |binary man/synthetic_us_2010.Rd | 2 +- tests/testthat/test-absolute_weighted_corr_fun.R | 11 ++--------- tests/testthat/test-compile_pseudo_pop.R | 2 +- tests/testthat/test-compute_density.R | 2 +- tests/testthat/test-estimate_npmetric_erf.R | 4 ++-- tests/testthat/test-generate_pseudo_pop.R | 2 +- 12 files changed, 30 insertions(+), 31 deletions(-)