Fri, 19 May 2023

Package mlflow updated to version 2.3.2 with previous version 2.2.2 dated 2023-03-15

Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for the complete machine learning life cycle, see <https://mlflow.org/>. This package supports installing 'MLflow', tracking experiments, creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre], Javier Luraschi [aut], Kevin Kuo [aut] , RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>

Diff between mlflow versions 2.2.2 dated 2023-03-15 and 2.3.2 dated 2023-05-19

 DESCRIPTION                                |    6 +++---
 MD5                                        |    8 ++++----
 R/tracking-experiments.R                   |    6 +-----
 README.md                                  |    2 --
 tests/testthat/test-tracking-experiments.R |   12 ++++++++----
 5 files changed, 16 insertions(+), 18 deletions(-)

More information about mlflow at CRAN
Permanent link

Package cdgd updated to version 0.3.1 with previous version 0.3.0 dated 2023-04-19

Title: Causal Decomposition of Group Disparities
Description: The causal decompositions of group disparities developed by Yu and Elwert (2023) <https://ang-yu.github.io/files/Causal_Decomposition_of_Group_Disparities_2023.pdf>. This package implements the estimators for the decomposition components that are based on efficient influence functions. For the nuisance functions of the estimators, both parametric and nonparametric options are provided, as well as manual options in case the default models are not satisfying.
Author: Ang Yu [aut, cre, cph]
Maintainer: Ang Yu <ang_yu@outlook.com>

Diff between cdgd versions 0.3.0 dated 2023-04-19 and 0.3.1 dated 2023-05-19

 DESCRIPTION  |   10 +++++-----
 MD5          |   10 +++++-----
 NEWS.md      |    6 ++++++
 R/cdgd0_ml.R |   36 ++++++++++++++++++------------------
 R/cdgd1_ml.R |   53 +++++++++++++++++++++++++++++++----------------------
 README.md    |   14 +++++++++++---
 6 files changed, 76 insertions(+), 53 deletions(-)

More information about cdgd at CRAN
Permanent link

Package gifski updated to version 1.12.0 with previous version 1.6.6-1 dated 2022-04-05

Title: Highest Quality GIF Encoder
Description: Multi-threaded GIF encoder written in Rust: <https://gif.ski/>. Converts images to GIF animations using pngquant's efficient cross-frame palettes and temporal dithering with thousands of colors per frame.
Author: Jeroen Ooms [aut, cre] , Kornel Lesinski [cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between gifski versions 1.6.6-1 dated 2022-04-05 and 1.12.0 dated 2023-05-19

 gifski-1.12.0/gifski/DESCRIPTION              |    6 
 gifski-1.12.0/gifski/MD5                      |   24 -
 gifski-1.12.0/gifski/NEWS                     |    4 
 gifski-1.12.0/gifski/configure                |   11 
 gifski-1.12.0/gifski/configure.ucrt           |only
 gifski-1.12.0/gifski/src/Makevars.win         |    6 
 gifski-1.12.0/gifski/src/Makevars.win.build   |only
 gifski-1.12.0/gifski/src/myrustlib/Cargo.lock |  425 +++++++++++++++-----------
 gifski-1.12.0/gifski/src/myrustlib/Cargo.toml |    2 
 gifski-1.12.0/gifski/src/myrustlib/gifski.h   |   44 ++
 gifski-1.12.0/gifski/src/old-1.4.3            |only
 gifski-1.12.0/gifski/src/old-1.6.6            |only
 gifski-1.6.6-1/gifski/src/Makevars.ucrt       |only
 gifski-1.6.6-1/gifski/src/Makevars.win.rust   |only
 gifski-1.6.6-1/gifski/src/legacy              |only
 15 files changed, 325 insertions(+), 197 deletions(-)

More information about gifski at CRAN
Permanent link

Package pct updated to version 0.9.9 with previous version 0.9.8 dated 2023-02-15

Title: Propensity to Cycle Tool
Description: Functions and example data to teach and increase the reproducibility of the methods and code underlying the Propensity to Cycle Tool (PCT), a research project and web application hosted at <https://www.pct.bike/>. For an academic paper on the methods, see Lovelace et al (2017) <doi:10.5198/jtlu.2016.862>.
Author: Robin Lovelace [aut, cre] , Layik Hama [aut] , Nathanael Sheehan [ctb]
Maintainer: Robin Lovelace <rob00x@gmail.com>

Diff between pct versions 0.9.8 dated 2023-02-15 and 0.9.9 dated 2023-05-19

 DESCRIPTION                          |    8 
 MD5                                  |   58 +--
 NEWS.md                              |    7 
 R/data.R                             |    3 
 R/desire_lines.R                     |    2 
 R/msoa_centroids.R                   |    8 
 R/uptake.R                           |    8 
 README.md                            |   57 ++-
 build/vignette.rds                   |binary
 inst/doc/cycling-potential-uk.Rmd    |    6 
 inst/doc/cycling-potential-uk.html   |  418 ++++++++++--------------
 inst/doc/km-cycled.Rmd               |    2 
 inst/doc/km-cycled.html              |  499 ++++++++++++----------------
 inst/doc/pct-international.html      |  328 ++++++++----------
 inst/doc/pct.Rmd                     |    2 
 inst/doc/pct.html                    |  607 ++++++++++++-----------------------
 inst/doc/uk-cities.Rmd               |    4 
 inst/doc/uk-cities.html              |  320 +++++++-----------
 man/figures/README-decayhills-1.png  |binary
 man/figures/README-rnetgove-1.png    |binary
 man/figures/README-routes_fast-1.png |binary
 man/get_centroids_ew.Rd              |    4 
 man/get_desire_lines.Rd              |    2 
 man/santiago_routes_cs.Rd            |    1 
 man/wight_routes_30.Rd               |    1 
 man/wight_zones.Rd                   |    1 
 vignettes/cycling-potential-uk.Rmd   |    6 
 vignettes/km-cycled.Rmd              |    2 
 vignettes/pct.Rmd                    |    2 
 vignettes/uk-cities.Rmd              |    4 
 30 files changed, 1022 insertions(+), 1338 deletions(-)

More information about pct at CRAN
Permanent link

Package cxhull updated to version 0.7.3 with previous version 0.7.2 dated 2023-03-08

Title: Convex Hull
Description: Computes the convex hull in arbitrary dimension, based on the Qhull library (<http://www.qhull.org>). The package provides a complete description of the convex hull: edges, ridges, facets, adjacencies. Triangulation is optional.
Author: C. B. Barber [cph] , The Geometry Center [cph], Stephane Laurent [cph, aut, cre]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>

Diff between cxhull versions 0.7.2 dated 2023-03-08 and 0.7.3 dated 2023-05-19

 DESCRIPTION             |   10 +++++-----
 MD5                     |    8 ++++----
 NEWS.md                 |    6 ++++++
 R/plot.R                |   13 ++++++++-----
 man/plotConvexHull3d.Rd |    5 ++++-
 5 files changed, 27 insertions(+), 15 deletions(-)

More information about cxhull at CRAN
Permanent link

Package cleanrmd updated to version 0.1.1 with previous version 0.1.0 dated 2022-06-14

Title: Clean Class-Less 'R Markdown' HTML Documents
Description: A collection of clean 'R Markdown' HTML document templates using classy-looking classless CSS styles. These documents use a minimal set of dependencies but still look great, making them suitable for use a package vignettes or for sharing results via email.
Author: Garrick Aden-Buie [aut, cre, cph] , Igor Adamenko [ctb, cph] , Alvaro Montoro [ctb, cph] , Ruan Martinelli [ctb, cph] , Tran Ngoc Tuan Anh [ctb, cph] , Marco Pontili [ctb, cph] , Evgeny Orekhov [ctb, cph] , Vincent Dorig [ctb, cph] , Yegor Bugayenko [...truncated...]
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>

Diff between cleanrmd versions 0.1.0 dated 2022-06-14 and 0.1.1 dated 2023-05-19

 cleanrmd-0.1.0/cleanrmd/tests/manual/001-minimal_files                                  |only
 cleanrmd-0.1.1/cleanrmd/DESCRIPTION                                                     |    8 
 cleanrmd-0.1.1/cleanrmd/MD5                                                             |  150 --
 cleanrmd-0.1.1/cleanrmd/NEWS.md                                                         |   13 
 cleanrmd-0.1.1/cleanrmd/R/html_document_clean.R                                         |    4 
 cleanrmd-0.1.1/cleanrmd/R/sysdata.rda                                                   |binary
 cleanrmd-0.1.1/cleanrmd/README.md                                                       |   75 -
 cleanrmd-0.1.1/cleanrmd/inst/resources/almond/almond.css                                |    2 
 cleanrmd-0.1.1/cleanrmd/inst/resources/axist/axist.css                                  |   12 
 cleanrmd-0.1.1/cleanrmd/inst/resources/bamboo/bamboo.css                                |    2 
 cleanrmd-0.1.1/cleanrmd/inst/resources/bullframe/bullframe-classless.min.css.map        |    2 
 cleanrmd-0.1.1/cleanrmd/inst/resources/bullframe/bullframe.css                          |    4 
 cleanrmd-0.1.1/cleanrmd/inst/resources/holiday/holiday.css                              |  223 ++-
 cleanrmd-0.1.1/cleanrmd/inst/resources/latex.css/fonts/Libertinus-bold-italic.woff2     |only
 cleanrmd-0.1.1/cleanrmd/inst/resources/latex.css/fonts/Libertinus-bold.woff2            |only
 cleanrmd-0.1.1/cleanrmd/inst/resources/latex.css/fonts/Libertinus-italic.woff2          |only
 cleanrmd-0.1.1/cleanrmd/inst/resources/latex.css/fonts/Libertinus-regular.woff2         |only
 cleanrmd-0.1.1/cleanrmd/inst/resources/latex.css/fonts/Libertinus-semibold-italic.woff2 |only
 cleanrmd-0.1.1/cleanrmd/inst/resources/latex.css/fonts/Libertinus-semibold.woff2        |only
 cleanrmd-0.1.1/cleanrmd/inst/resources/latex.css/latex.css                              |  106 +
 cleanrmd-0.1.1/cleanrmd/inst/resources/picocss/pico.css                                 |    6 
 cleanrmd-0.1.1/cleanrmd/inst/resources/sakura-vader/sakura-vader.css                    |  158 +-
 cleanrmd-0.1.1/cleanrmd/inst/resources/sakura/sakura.css                                |  166 +-
 cleanrmd-0.1.1/cleanrmd/inst/resources/simplecss/simple.css                             |    2 
 cleanrmd-0.1.1/cleanrmd/inst/resources/vanilla/vanilla.css                              |   33 
 cleanrmd-0.1.1/cleanrmd/inst/template/cleanrmd.html                                     |   25 
 cleanrmd-0.1.1/cleanrmd/man/cleanrmd_themes.Rd                                          |    4 
 cleanrmd-0.1.1/cleanrmd/man/html_document_clean.Rd                                      |   12 
 cleanrmd-0.1.1/cleanrmd/man/rmd-fragments/usage.Rmd                                     |    6 
 cleanrmd-0.1.1/cleanrmd/man/use_cleanrmd.Rd                                             |    6 
 cleanrmd-0.1.1/cleanrmd/tests/manual/001-minimal.Rmd                                    |    9 
 cleanrmd-0.1.1/cleanrmd/tests/manual/001-minimal.html                                   |  714 ++++++++--
 32 files changed, 1263 insertions(+), 479 deletions(-)

More information about cleanrmd at CRAN
Permanent link

Package crew.cluster updated to version 0.1.0 with previous version 0.0.2 dated 2023-04-25

Title: Crew Launcher Plugins for Traditional High-Performance Computing Clusters
Description: In computationally demanding analysis projects, statisticians and data scientists asynchronously deploy long-running tasks to distributed systems, ranging from traditional clusters to cloud services. The 'crew.cluster' package extends the 'mirai'-powered 'crew' package with worker launcher plugins for traditional high-performance computing systems. Inspiration also comes from packages 'mirai' by Gao (2023) <https://github.com/shikokuchuo/mirai>, 'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>, 'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>, 'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>), and 'batchtools' by Lang, Bischl, and Surmann (2017). <doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre] , Michael Gilbert Levin [aut] , Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>

Diff between crew.cluster versions 0.0.2 dated 2023-04-25 and 0.1.0 dated 2023-05-19

 crew.cluster-0.0.2/crew.cluster/tests/sge/transient.R                       |only
 crew.cluster-0.1.0/crew.cluster/DESCRIPTION                                 |   16 
 crew.cluster-0.1.0/crew.cluster/MD5                                         |   66 +-
 crew.cluster-0.1.0/crew.cluster/NAMESPACE                                   |   14 
 crew.cluster-0.1.0/crew.cluster/NEWS.md                                     |   10 
 crew.cluster-0.1.0/crew.cluster/R/crew_controller_lsf.R                     |only
 crew.cluster-0.1.0/crew.cluster/R/crew_controller_pbs.R                     |only
 crew.cluster-0.1.0/crew.cluster/R/crew_controller_sge.R                     |   49 -
 crew.cluster-0.1.0/crew.cluster/R/crew_controller_slurm.R                   |only
 crew.cluster-0.1.0/crew.cluster/R/crew_launcher_cluster.R                   |only
 crew.cluster-0.1.0/crew.cluster/R/crew_launcher_lsf.R                       |only
 crew.cluster-0.1.0/crew.cluster/R/crew_launcher_pbs.R                       |only
 crew.cluster-0.1.0/crew.cluster/R/crew_launcher_sge.R                       |  253 ++++------
 crew.cluster-0.1.0/crew.cluster/R/crew_launcher_slurm.R                     |only
 crew.cluster-0.1.0/crew.cluster/R/crew_package.R                            |   18 
 crew.cluster-0.1.0/crew.cluster/R/utils_names.R                             |    6 
 crew.cluster-0.1.0/crew.cluster/inst/WORDLIST                               |    3 
 crew.cluster-0.1.0/crew.cluster/man/crew.cluster-package.Rd                 |   12 
 crew.cluster-0.1.0/crew.cluster/man/crew_class_launcher_cluster.Rd          |only
 crew.cluster-0.1.0/crew.cluster/man/crew_class_launcher_lsf.Rd              |only
 crew.cluster-0.1.0/crew.cluster/man/crew_class_launcher_pbs.Rd              |only
 crew.cluster-0.1.0/crew.cluster/man/crew_class_launcher_sge.Rd              |  168 ++----
 crew.cluster-0.1.0/crew.cluster/man/crew_class_launcher_slurm.Rd            |only
 crew.cluster-0.1.0/crew.cluster/man/crew_controller_lsf.Rd                  |only
 crew.cluster-0.1.0/crew.cluster/man/crew_controller_pbs.Rd                  |only
 crew.cluster-0.1.0/crew.cluster/man/crew_controller_sge.Rd                  |  147 +++--
 crew.cluster-0.1.0/crew.cluster/man/crew_controller_slurm.Rd                |only
 crew.cluster-0.1.0/crew.cluster/man/crew_launcher_cluster.Rd                |only
 crew.cluster-0.1.0/crew.cluster/man/crew_launcher_lsf.Rd                    |only
 crew.cluster-0.1.0/crew.cluster/man/crew_launcher_pbs.Rd                    |only
 crew.cluster-0.1.0/crew.cluster/man/crew_launcher_sge.Rd                    |  119 +++-
 crew.cluster-0.1.0/crew.cluster/man/crew_launcher_slurm.Rd                  |only
 crew.cluster-0.1.0/crew.cluster/tests/lsf                                   |only
 crew.cluster-0.1.0/crew.cluster/tests/pbs                                   |only
 crew.cluster-0.1.0/crew.cluster/tests/sge/minimal.R                         |    8 
 crew.cluster-0.1.0/crew.cluster/tests/sge/persistent.R                      |    2 
 crew.cluster-0.1.0/crew.cluster/tests/slurm                                 |only
 crew.cluster-0.1.0/crew.cluster/tests/testthat/test-crew_controller_lsf.R   |only
 crew.cluster-0.1.0/crew.cluster/tests/testthat/test-crew_controller_pbs.R   |only
 crew.cluster-0.1.0/crew.cluster/tests/testthat/test-crew_controller_sge.R   |   35 -
 crew.cluster-0.1.0/crew.cluster/tests/testthat/test-crew_controller_slurm.R |only
 crew.cluster-0.1.0/crew.cluster/tests/testthat/test-crew_launcher_cluster.R |only
 crew.cluster-0.1.0/crew.cluster/tests/testthat/test-crew_launcher_lsf.R     |only
 crew.cluster-0.1.0/crew.cluster/tests/testthat/test-crew_launcher_pbs.R     |only
 crew.cluster-0.1.0/crew.cluster/tests/testthat/test-crew_launcher_sge.R     |   44 +
 crew.cluster-0.1.0/crew.cluster/tests/testthat/test-crew_launcher_slurm.R   |only
 crew.cluster-0.1.0/crew.cluster/tests/testthat/test-utils_names.R           |    7 
 47 files changed, 539 insertions(+), 438 deletions(-)

More information about crew.cluster at CRAN
Permanent link

Package uniformly updated to version 0.3.0 with previous version 0.2.0 dated 2022-03-13

Title: Uniform Sampling
Description: Uniform sampling on various geometric shapes, such as spheres, ellipsoids, simplices.
Author: Stephane Laurent
Maintainer: Stephane Laurent <laurent_step@outlook.fr>

Diff between uniformly versions 0.2.0 dated 2022-03-13 and 0.3.0 dated 2023-05-19

 DESCRIPTION              |   21 
 MD5                      |   14 
 NEWS.md                  |   31 
 R/ellipsoid.R            |  139 
 build/vignette.rds       |binary
 inst/doc/convexhull.R    |  224 -
 inst/doc/convexhull.html | 9648 +++++++++++++++++++++++++++++++++++++++++++++--
 man/runif_ellipsoid.Rd   |   28 
 8 files changed, 9577 insertions(+), 528 deletions(-)

More information about uniformly at CRAN
Permanent link

Package modelsummary updated to version 1.4.1 with previous version 1.4.0 dated 2023-04-26

Title: Summary Tables and Plots for Statistical Models and Data: Beautiful, Customizable, and Publication-Ready
Description: Create beautiful and customizable tables to summarize several statistical models side-by-side. Draw coefficient plots, multi-level cross-tabs, dataset summaries, balance tables (a.k.a. "Table 1s"), and correlation matrices. This package supports dozens of statistical models, and it can produce tables in HTML, LaTeX, Word, Markdown, PDF, PowerPoint, Excel, RTF, JPG, or PNG. Tables can easily be embedded in 'Rmarkdown' or 'knitr' dynamic documents. Details can be found in Arel-Bundock (2022) <doi:10.18637/jss.v103.i01>.
Author: Vincent Arel-Bundock [aut, cre] , Joachim Gassen [ctb] , Nathan Eastwood [ctb], Nick Huntington-Klein [ctb] , Moritz Schwarz [ctb] , Benjamin Elbers [ctb] , Grant McDermott [ctb] , Lukas Wallrich [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>

Diff between modelsummary versions 1.4.0 dated 2023-04-26 and 1.4.1 dated 2023-05-19

 DESCRIPTION                                          |    6 
 MD5                                                  |  109 ++++++-----
 NAMESPACE                                            |    1 
 NEWS.md                                              |   13 +
 R/coef_rename.R                                      |    6 
 R/datasummary.R                                      |   39 ++--
 R/datasummary_balance.R                              |    7 
 R/datasummary_correlation.R                          |    6 
 R/datasummary_crosstab.R                             |   24 +-
 R/datasummary_functions.R                            |   26 +-
 R/datasummary_skim.R                                 |    9 
 R/factory_markdown.R                                 |    7 
 R/fmt_factory.R                                      |   35 +++
 R/get_estimates.R                                    |   11 -
 R/gof_map.R                                          |    2 
 R/modelplot.R                                        |    7 
 R/modelsummary.R                                     |  177 ++++++++++++++++++-
 R/modelsummary_list.R                                |    2 
 R/modelsummary_rbind.R                               |    9 
 R/shape_estimates.R                                  |    2 
 build/partial.rdb                                    |binary
 inst/tinytest/_tinysnapshot/fmt-fmt_sci_2.txt        |only
 inst/tinytest/_tinysnapshot/rbind-add_rows_rbind.txt |only
 inst/tinytest/fwlwmshffqllmyepodhgvjwsqxglzo.log     |only
 inst/tinytest/test-fmt.R                             |   21 ++
 inst/tinytest/test-rbind.R                           |   31 +++
 inst/tinytest/test-shape.R                           |   25 ++
 inst/tinytest/test-vcov.R                            |   15 +
 man/Max.Rd                                           |    2 
 man/Mean.Rd                                          |    2 
 man/Median.Rd                                        |    2 
 man/Min.Rd                                           |    2 
 man/N.Rd                                             |    2 
 man/NUnique.Rd                                       |    2 
 man/P0.Rd                                            |    2 
 man/P100.Rd                                          |    2 
 man/P25.Rd                                           |    2 
 man/P50.Rd                                           |    2 
 man/P75.Rd                                           |    2 
 man/SD.Rd                                            |    2 
 man/Var.Rd                                           |    2 
 man/coef_rename.Rd                                   |   10 -
 man/datasummary.Rd                                   |   37 ++-
 man/datasummary_balance.Rd                           |    9 
 man/datasummary_correlation.Rd                       |   30 +--
 man/datasummary_crosstab.Rd                          |   25 +-
 man/datasummary_skim.Rd                              |   11 -
 man/dsummary.Rd                                      |   37 ++-
 man/figures                                          |only
 man/fmt_sci.Rd                                       |only
 man/gof_map.Rd                                       |    2 
 man/modelplot.Rd                                     |    8 
 man/modelsummary.Rd                                  |   62 +++---
 man/msummary.Rd                                      |   62 +++---
 54 files changed, 627 insertions(+), 282 deletions(-)

More information about modelsummary at CRAN
Permanent link

New package washi with initial version 0.1.0
Package: washi
Title: Washington Soil Health Initiative Branding
Version: 0.1.0
Description: Create plots and tables in a consistent style with WaSHI (Washington Soil Health Initiative) branding. Use 'washi' to easily style your 'ggplot2' plots and 'flextable' tables.
License: MIT + file LICENSE
URL: https://github.com/WA-Department-of-Agriculture/washi, https://wa-department-of-agriculture.github.io/washi/
BugReports: https://github.com/WA-Department-of-Agriculture/washi/issues/
Depends: R (>= 3.5)
Imports: cli, extrafont, flextable, ggplot2, graphics, grDevices, officer, scales
Suggests: covr, forcats, testthat (>= 3.0.0), vdiffr
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2023-05-18 16:39:08 UTC; JRyan
Author: Jadey Ryan [aut, cre], Molly Mcilquham [aut], Dani Gelardi [aut], Washington State Department of Agriculture [cph, fnd]
Maintainer: Jadey Ryan <jryan@agr.wa.gov>
Repository: CRAN
Date/Publication: 2023-05-19 17:20:02 UTC

More information about washi at CRAN
Permanent link

Package triact updated to version 0.3.0 with previous version 0.2.0 dated 2023-01-11

Title: Analyzing the Lying Behavior of Cows from Accelerometer Data
Description: Assists in analyzing the lying behavior of cows from raw data recorded with a triaxial accelerometer attached to the hind leg of a cow. Allows the determination of common measures for lying behavior including total lying duration, the number of lying bouts, and the mean duration of lying bouts. Further capabilities are the description of lying laterality and the calculation of proxies for the level of physical activity of the cow. Reference: Simmler M., Brouwers S. P. (2023) <https://gitlab.com/AgroSimi/triact_manuscript>.
Author: Michael Simmler [aut, cre] , Stijn Pieter Brouwers [ctb]
Maintainer: Michael Simmler <michael.simmler@agroscope.admin.ch>

Diff between triact versions 0.2.0 dated 2023-01-11 and 0.3.0 dated 2023-05-19

 triact-0.2.0/triact/README.md                  |only
 triact-0.2.0/triact/inst/doc/introduction.pdf  |only
 triact-0.3.0/triact/DESCRIPTION                |   18 -
 triact-0.3.0/triact/MD5                        |   38 +--
 triact-0.3.0/triact/NEWS.md                    |    9 
 triact-0.3.0/triact/R/000_utils.R              |   56 +---
 triact-0.3.0/triact/R/001_load_methods.R       |  123 ++++++---
 triact-0.3.0/triact/R/002_check_methods.R      |    5 
 triact-0.3.0/triact/R/003_add_methods.R        |   93 ++++++-
 triact-0.3.0/triact/R/004_summarize_methods.R  |    4 
 triact-0.3.0/triact/build/vignette.rds         |binary
 triact-0.3.0/triact/data/cows_5hz.rda          |binary
 triact-0.3.0/triact/inst/CITATION              |   11 
 triact-0.3.0/triact/inst/doc/introduction.R    |   85 ++++--
 triact-0.3.0/triact/inst/doc/introduction.Rmd  |  311 ++++++++++++++++++-------
 triact-0.3.0/triact/inst/doc/introduction.html |only
 triact-0.3.0/triact/man/Triact.Rd              |  226 +++++++++++++-----
 triact-0.3.0/triact/man/bout_summary.Rd        |   14 -
 triact-0.3.0/triact/man/cows_5hz.Rd            |   19 +
 triact-0.3.0/triact/man/interval_summary.Rd    |   11 
 triact-0.3.0/triact/vignettes/Fig_axes.png     |only
 triact-0.3.0/triact/vignettes/introduction.Rmd |  311 ++++++++++++++++++-------
 22 files changed, 945 insertions(+), 389 deletions(-)

More information about triact at CRAN
Permanent link

New package snvecR with initial version 3.7.5
Package: snvecR
Title: Calculate Earth’s Obliquity and Precession in the Past
Version: 3.7.5
Description: Easily calculate precession and obliquity from an orbital solution (defaults to ZB18a from Zeebe and Lourens (2019) <doi:10.1126/science.aax0612>) and assumed or reconstructed values for tidal dissipation (Td) and dynamical ellipticity (Ed). This is a translation and adaptation of the C-code in the supplementary material to Zeebe and Lourens (2022) <doi:10.1029/2021PA004349>, with further details on the methodology described in Zeebe (2022) <doi:10.3847/1538-3881/ac80f8>. The name of the C-routine is snvec, which refers to the key units of computation: spin vector s and orbit normal vector n.
License: GPL (>= 3)
Encoding: UTF-8
Suggests: ggplot2, testthat, roxygen2, knitr, rmarkdown
Imports: deSolve, pracma, cli (>= 3.4.0), dplyr, tibble, purrr, readr, tidyselect, lubridate, rlang (>= 0.4.11), withr, tidyr, glue, curl
Depends: R (>= 3.5.0)
VignetteBuilder: knitr
URL: https://japhir.github.io/snvecR/
NeedsCompilation: no
Packaged: 2023-05-18 19:43:47 UTC; japhir
Author: Ilja Kocken [aut, cre, trl, cph] , Richard Zeebe [aut]
Maintainer: Ilja Kocken <ikocken@hawaii.edu>
Repository: CRAN
Date/Publication: 2023-05-19 17:40:02 UTC

More information about snvecR at CRAN
Permanent link

New package sgs with initial version 0.1.0
Package: sgs
Title: Sparse-Group SLOPE: Adaptive Bi-Level Selection with FDR Control
Version: 0.1.0
Date: 2023-05-07
Maintainer: Fabio Feser <ff120@ic.ac.uk>
Description: Implementation of Sparse-group SLOPE: Adaptive bi-level with FDR-control (Feser et al. (2023) <arXiv:2305.09467>). Linear and logistic regression models are supported, both of which can be fit using k-fold cross-validation. Dense and sparse input matrices are supported. In addition, a general adaptive three operator splitting (ATOS) implementation is provided.
Imports: Matrix, MASS, caret, grDevices, graphics, methods, stats, faux, SLOPE, Rlab, Rcpp (>= 1.0.10)
LinkingTo: Rcpp, RcppArmadillo
Suggests: SGL, gglasso, glmnet, seagull, testthat, knitr, rmarkdown
License: GPL (>= 3)
Encoding: UTF-8
URL: https://github.com/ff1201/sgs
BugReports: https://github.com/ff1201/sgs/issues
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2023-05-18 16:12:08 UTC; fabiofeser
Author: Fabio Feser [aut, cre] , Marina Evangelou [aut]
Repository: CRAN
Date/Publication: 2023-05-19 17:20:05 UTC

More information about sgs at CRAN
Permanent link

New package resde with initial version 1.1
Package: resde
Title: Estimation in Reducible Stochastic Differential Equations
Version: 1.1
Description: Maximum likelihood estimation for univariate reducible stochastic differential equation models. Discrete, possibly noisy observations, not necessarily evenly spaced in time. Can fit multiple individuals/units with global and local parameters, by fixed-effects or mixed-effects methods. Ref.: Garcia, O. (2019) "Estimating reducible stochastic differential equations by conversion to a least-squares problem", Computational Statistics 34(1): 23-46, <doi:10.1007/s00180-018-0837-4>.
License: GPL (>= 2)
Encoding: UTF-8
Imports: stats, Deriv, nlme, methods
Suggests: knitr
VignetteBuilder: knitr
URL: https://github.com/ogarciav/resde/
BugReports: https://github.com/ogarciav/resde/issues
NeedsCompilation: no
Packaged: 2023-05-18 15:49:47 UTC; oscar
Author: Oscar Garcia [aut, cre]
Maintainer: Oscar Garcia <garcia@dasometrics.net>
Repository: CRAN
Date/Publication: 2023-05-19 17:20:09 UTC

More information about resde at CRAN
Permanent link

New package nonLinearDotPlot with initial version 0.5.0
Package: nonLinearDotPlot
Title: Non Linear Dot Plots
Version: 0.5.0
Description: Non linear dot plots are diagrams that allow dots of varying size to be constructed, so that columns with a large number of samples are reduced in height. Implementation of algorithm described in: Nils Rodrigues and Daniel Weiskopf, "Nonlinear Dot Plots", IEEE Transactions on Visualization and Computer Graphics, vol. 24, no. 1, pp. 616-625, 2018. <doi:10.1109/TVCG.2017.2744018>.
License: MIT + file LICENSE
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2023-05-18 16:54:03 UTC; Poly
Author: Soeren Doering [aut, cre] , Manuel Kubica [aut], Ines Fourati [aut]
Maintainer: Soeren Doering <doering.soeren@gmx.de>
Repository: CRAN
Date/Publication: 2023-05-19 17:30:02 UTC

More information about nonLinearDotPlot at CRAN
Permanent link

Package metalite updated to version 0.1.2 with previous version 0.1.1 dated 2023-02-08

Title: ADaM Metadata Structure
Description: A metadata structure for clinical data analysis and reporting based on Analysis Data Model (ADaM) datasets. The package simplifies clinical analysis and reporting tool development by defining standardized inputs, outputs, and workflow. The package can be used to create analysis and reporting planning grid, mock table, and validated analysis and reporting results based on consistent inputs.
Author: Yilong Zhang [aut], Yujie Zhao [aut, cre], Nan Xiao [aut], Benjamin Wang [ctb], Brian Lang [ctb], Howard Baek [ctb], Ruchitbhai Patel [ctb], Madhusudhan Ginnaram [ctb], Sarad Nepal [ctb], Venkatesh Burla [ctb], Merck Sharp & Dohme Corp [cph]
Maintainer: Yujie Zhao <yujie.zhao@merck.com>

Diff between metalite versions 0.1.1 dated 2023-02-08 and 0.1.2 dated 2023-05-19

 DESCRIPTION                                                 |    6 
 MD5                                                         |   33 
 NAMESPACE                                                   |    1 
 NEWS.md                                                     |    8 
 R/collect_n_subject.R                                       |   46 -
 R/meta_adam.R                                               |    2 
 R/meta_example_exploration.R                                |    8 
 R/outdata.R                                                 |    1 
 R/plan.R                                                    |    2 
 R/sysdata.rda                                               |binary
 README.md                                                   |   11 
 build/vignette.rds                                          |binary
 inst/doc/ar-grid.html                                       |   94 +-
 inst/doc/metalite.html                                      |   16 
 inst/doc/mockup-table.html                                  |   18 
 man/n_subject.Rd                                            |only
 tests/testthat/test-independent-testing-collect_n_subject.R |  487 +++++++++++-
 tests/testthat/test-independent-testing-plan.R              |    3 
 18 files changed, 607 insertions(+), 129 deletions(-)

More information about metalite at CRAN
Permanent link

Package CGNM updated to version 0.6.5 with previous version 0.6.2 dated 2023-01-10

Title: Cluster Gauss-Newton Method
Description: Find multiple solutions of a nonlinear least squares problem. Cluster Gauss-Newton method does not assume uniqueness of the solution of the nonlinear least squares problem and compute approximate multiple minimizers. Please cite the following paper when this software is used in your research: Aoki et al. (2020) <doi:10.1007/s11081-020-09571-2>. Cluster Gauss–Newton method. Optimization and Engineering, 1-31.
Author: Yasunori Aoki
Maintainer: Yasunori Aoki <yaoki@uwaterloo.ca>

Diff between CGNM versions 0.6.2 dated 2023-01-10 and 0.6.5 dated 2023-05-19

 CGNM-0.6.2/CGNM/R/designOptimizer.R                          |only
 CGNM-0.6.5/CGNM/DESCRIPTION                                  |    6 
 CGNM-0.6.5/CGNM/MD5                                          |   57 
 CGNM-0.6.5/CGNM/NAMESPACE                                    |    4 
 CGNM-0.6.5/CGNM/R/Cluster_Gauss_Newton_method.R              |  105 +
 CGNM-0.6.5/CGNM/R/PostProcess.R                              |  753 ++++++++++-
 CGNM-0.6.5/CGNM/build/vignette.rds                           |binary
 CGNM-0.6.5/CGNM/inst/doc/CGNM-vignette.R                     |   51 
 CGNM-0.6.5/CGNM/inst/doc/CGNM-vignette.Rmd                   |   62 
 CGNM-0.6.5/CGNM/inst/doc/CGNM-vignette.html                  |  451 +++---
 CGNM-0.6.5/CGNM/man/Cluster_Gauss_Newton_Bootstrap_method.Rd |    2 
 CGNM-0.6.5/CGNM/man/Cluster_Gauss_Newton_method.Rd           |   15 
 CGNM-0.6.5/CGNM/man/acceptedApproximateMinimizers.Rd         |    2 
 CGNM-0.6.5/CGNM/man/acceptedIndices.Rd                       |    2 
 CGNM-0.6.5/CGNM/man/acceptedIndices_binary.Rd                |    2 
 CGNM-0.6.5/CGNM/man/acceptedMaxSSR.Rd                        |    2 
 CGNM-0.6.5/CGNM/man/bestApproximateMinimizers.Rd             |    2 
 CGNM-0.6.5/CGNM/man/plot_2DprofileLikelihood.Rd              |    4 
 CGNM-0.6.5/CGNM/man/plot_Rank_SSR.Rd                         |    2 
 CGNM-0.6.5/CGNM/man/plot_SSR_parameterValue.Rd               |    2 
 CGNM-0.6.5/CGNM/man/plot_goodnessOfFit.Rd                    |   16 
 CGNM-0.6.5/CGNM/man/plot_paraDistribution_byHistogram.Rd     |    2 
 CGNM-0.6.5/CGNM/man/plot_paraDistribution_byViolinPlots.Rd   |    2 
 CGNM-0.6.5/CGNM/man/plot_parameterValue_scatterPlots.Rd      |    2 
 CGNM-0.6.5/CGNM/man/plot_profileLikelihood.Rd                |    4 
 CGNM-0.6.5/CGNM/man/plot_simulationMatrixWithCI.Rd           |only
 CGNM-0.6.5/CGNM/man/plot_simulationWithCI.Rd                 |only
 CGNM-0.6.5/CGNM/man/suggestInitialLowerRange.Rd              |only
 CGNM-0.6.5/CGNM/man/suggestInitialUpperRange.Rd              |only
 CGNM-0.6.5/CGNM/man/table_parameterSummary.Rd                |    2 
 CGNM-0.6.5/CGNM/man/topIndices.Rd                            |    2 
 CGNM-0.6.5/CGNM/vignettes/CGNM-vignette.Rmd                  |   62 
 32 files changed, 1238 insertions(+), 378 deletions(-)

More information about CGNM at CRAN
Permanent link

Package mkin updated to version 1.2.4 with previous version 1.2.3 dated 2023-04-17

Title: Kinetic Evaluation of Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006, 2014). Includes a function for conveniently defining differential equation models, model solution based on eigenvalues if possible or using numerical solvers. If a C compiler (on windows: 'Rtools') is installed, differential equation models are solved using automatically generated C functions. Heteroscedasticity can be taken into account using variance by variable or two-component error models as described by Ranke and Meinecke (2018) <doi:10.3390/environments6120124>. Hierarchical degradation models can be fitted using nonlinear mixed-effects model packages as a back end as described by Ranke et al. (2021) <doi:10.3390/environments8080071>. Please note that no warranty is implied for correctness of results or fitness for a particular purpose.
Author: Johannes Ranke [aut, cre, cph] , Katrin Lindenberger [ctb] ), Rene Lehmann [ctb] and invilr), Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke <johannes.ranke@jrwb.de>

Diff between mkin versions 1.2.3 dated 2023-04-17 and 1.2.4 dated 2023-05-19

 DESCRIPTION                              |    8 
 MD5                                      |   54 
 NEWS.md                                  |   10 
 R/D24_2014.R                             |    2 
 R/dimethenamid_2018.R                    |    2 
 R/endpoints.R                            |    5 
 R/hierarchical_kinetics.R                |    4 
 R/multistart.R                           |   11 
 build/partial.rdb                        |binary
 build/vignette.rds                       |binary
 inst/doc/FOCUS_D.html                    |   18 
 inst/doc/FOCUS_L.html                    | 2040 ++++++-------------------------
 inst/doc/FOCUS_L.rmd                     |    7 
 inst/doc/dmta_parent_2022_prebuilt.pdf   |binary
 inst/doc/dmta_pathway_2022_prebuilt.pdf  |binary
 inst/doc/mkin.html                       | 1934 ++++-------------------------
 inst/doc/mkin.rmd                        |   10 
 inst/doc/twa.html                        |    2 
 man/D24_2014.Rd                          |    2 
 man/dimethenamid_2018.Rd                 |    2 
 man/hierarchical_kinetics.Rd             |    4 
 man/multistart.Rd                        |    7 
 vignettes/FOCUS_L.rmd                    |    7 
 vignettes/mkin.rmd                       |   10 
 vignettes/prebuilt/2022_cyan_pathway.pdf |binary
 vignettes/prebuilt/2022_cyan_pathway.rmd |   45 
 vignettes/prebuilt/2022_dmta_pathway.pdf |binary
 vignettes/prebuilt/2022_dmta_pathway.rmd |   24 
 28 files changed, 870 insertions(+), 3338 deletions(-)

More information about mkin at CRAN
Permanent link

Package buildmer updated to version 2.9 with previous version 2.8 dated 2023-01-06

Title: Stepwise Elimination and Term Reordering for Mixed-Effects Regression
Description: Finds the largest possible regression model that will still converge for various types of regression analyses (including mixed models and generalized additive models) and then optionally performs stepwise elimination similar to the forward and backward effect-selection methods in SAS, based on the change in log-likelihood or its significance, Akaike's Information Criterion, the Bayesian Information Criterion, the explained deviance, or the F-test of the change in R².
Author: Cesko C. Voeten [aut, cre]
Maintainer: Cesko C. Voeten <cvoeten@gmail.com>

Diff between buildmer versions 2.8 dated 2023-01-06 and 2.9 dated 2023-05-19

 ChangeLog                            |   16 
 DESCRIPTION                          |    8 
 MD5                                  |   22 
 R/buildmer-private.R                 |    2 
 R/control.R                          |    4 
 R/utility.R                          |   31 
 build/vignette.rds                   |binary
 inst/doc/buildmer.R                  |  432 +++----
 inst/doc/buildmer.html               | 1902 +++++++++++++++++------------------
 man/converged.Rd                     |    2 
 man/re2mgcv.Rd                       |    4 
 tests/testthat/data/buildmertree.csv |    7 
 12 files changed, 1228 insertions(+), 1202 deletions(-)

More information about buildmer at CRAN
Permanent link

Package PlaneGeometry updated to version 1.4.0 with previous version 1.3.1 dated 2022-01-13

Title: Plane Geometry
Description: An extensive set of plane geometry routines. Provides R6 classes representing triangles, circles, circular arcs, ellipses, elliptical arcs and lines, and their plot methods. Also provides R6 classes representing transformations: rotations, reflections, homotheties, scalings, general affine transformations, inversions, Möbius transformations.
Author: Stephane Laurent
Maintainer: Stephane Laurent <laurent_step@outlook.fr>

Diff between PlaneGeometry versions 1.3.1 dated 2022-01-13 and 1.4.0 dated 2023-05-19

 PlaneGeometry-1.3.1/PlaneGeometry/R/EllipticIntegral.R                |only
 PlaneGeometry-1.3.1/PlaneGeometry/man/ellint2.Rd                      |only
 PlaneGeometry-1.4.0/PlaneGeometry/DESCRIPTION                         |   29 
 PlaneGeometry-1.4.0/PlaneGeometry/MD5                                 |   62 
 PlaneGeometry-1.4.0/PlaneGeometry/NAMESPACE                           |   14 
 PlaneGeometry-1.4.0/PlaneGeometry/NEWS.md                             |  149 
 PlaneGeometry-1.4.0/PlaneGeometry/R/Circle.R                          | 1351 ++--
 PlaneGeometry-1.4.0/PlaneGeometry/R/Ellipse.R                         | 1778 +++---
 PlaneGeometry-1.4.0/PlaneGeometry/R/EllipticalArc.R                   |   22 
 PlaneGeometry-1.4.0/PlaneGeometry/build/vignette.rds                  |binary
 PlaneGeometry-1.4.0/PlaneGeometry/inst/doc/examples.R                 | 2300 +++----
 PlaneGeometry-1.4.0/PlaneGeometry/inst/doc/examples.Rmd               | 2846 ++++-----
 PlaneGeometry-1.4.0/PlaneGeometry/inst/doc/examples.html              | 2948 +++++-----
 PlaneGeometry-1.4.0/PlaneGeometry/man/Affine.Rd                       |   54 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Arc.Rd                          |   48 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Circle.Rd                       |  132 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Ellipse.Rd                      |  126 
 PlaneGeometry-1.4.0/PlaneGeometry/man/EllipticalArc.Rd                |   58 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Homothety.Rd                    |   42 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Inversion.Rd                    |   66 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Line.Rd                         |  102 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Mobius.Rd                       |   78 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Projection.Rd                   |   42 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Reflection.Rd                   |   66 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Rotation.Rd                     |   78 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Scaling.Rd                      |   42 
 PlaneGeometry-1.4.0/PlaneGeometry/man/ScalingXY.Rd                    |   36 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Shear.Rd                        |   36 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Translation.Rd                  |   66 
 PlaneGeometry-1.4.0/PlaneGeometry/man/Triangle.Rd                     |  372 -
 PlaneGeometry-1.4.0/PlaneGeometry/man/maxAreaInscribedCircle.Rd       |only
 PlaneGeometry-1.4.0/PlaneGeometry/man/maxAreaInscribedEllipse.Rd      |only
 PlaneGeometry-1.4.0/PlaneGeometry/tests/testthat/test-ellipticalArc.R |    2 
 PlaneGeometry-1.4.0/PlaneGeometry/vignettes/examples.Rmd              | 2846 ++++-----
 34 files changed, 8123 insertions(+), 7668 deletions(-)

More information about PlaneGeometry at CRAN
Permanent link

Package BFS updated to version 0.4.7 with previous version 0.4.6 dated 2023-03-30

Title: Get Data from the Swiss Statistical Office
Description: Search and download data from the Swiss Federal Statistical Office (BFS) <https://www.bfs.admin.ch/>.
Author: Felix Luginbuhl [aut, cre]
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>

Diff between BFS versions 0.4.6 dated 2023-03-30 and 0.4.7 dated 2023-05-19

 DESCRIPTION             |    8 -
 MD5                     |   12 +-
 NAMESPACE               |    1 
 NEWS.md                 |    4 
 R/bfs_get_data.R        |    2 
 R/bfs_get_metadata.R    |only
 README.md               |  205 ++++++++++++++++++++++--------------------------
 man/bfs_get_metadata.Rd |only
 8 files changed, 115 insertions(+), 117 deletions(-)

More information about BFS at CRAN
Permanent link

Package tigris updated to version 2.0.3 with previous version 2.0.1 dated 2023-01-30

Title: Load Census TIGER/Line Shapefiles
Description: Download TIGER/Line shapefiles from the United States Census Bureau (<https://www.census.gov/geographies/mapping-files/time-series/geo/tiger-line-file.html>) and load into R as 'sf' objects.
Author: Kyle Walker [aut, cre], Bob Rudis [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>

Diff between tigris versions 2.0.1 dated 2023-01-30 and 2.0.3 dated 2023-05-19

 DESCRIPTION                    |   10 ++++----
 MD5                            |   46 ++++++++++++++++++++---------------------
 R/enumeration_units.R          |   23 +++++++++++++++++---
 R/fips_codes.R                 |    4 +--
 R/native.R                     |    4 +--
 R/places.R                     |   25 +---------------------
 R/transportation.R             |   22 ++++++++++++++++---
 data/fips_codes.rda            |binary
 man/append_geoid.Rd            |    2 -
 man/call_geolocator.Rd         |    2 -
 man/call_geolocator_latlon.Rd  |    2 -
 man/county_subdivisions.Rd     |    6 ++---
 man/fips_codes.Rd              |   16 +++++++-------
 man/load_tiger.Rd              |    2 -
 man/places.Rd                  |   26 +----------------------
 man/primary_roads.Rd           |   17 +++++++++++++++
 man/primary_secondary_roads.Rd |   25 ++++++++++++++++++----
 man/roads.Rd                   |   25 ++++++++++++++++++----
 man/tigris.Rd                  |    2 -
 man/tigris_type.Rd             |    2 -
 man/tracts.Rd                  |   12 +++++++++-
 man/tribal_block_groups.Rd     |    2 -
 man/tribal_census_tracts.Rd    |    2 -
 man/urban_areas.Rd             |    2 -
 24 files changed, 164 insertions(+), 115 deletions(-)

More information about tigris at CRAN
Permanent link

Package TidyDensity updated to version 1.2.5 with previous version 1.2.4 dated 2022-11-16

Title: Functions for Tidy Analysis and Generation of Random Data
Description: To make it easy to generate random numbers based upon the underlying stats distribution functions. All data is returned in a tidy and structured format making working with the data simple and straight forward. Given that the data is returned in a tidy 'tibble' it lends itself to working with the rest of the 'tidyverse'.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>

Diff between TidyDensity versions 1.2.4 dated 2022-11-16 and 1.2.5 dated 2023-05-19

 TidyDensity-1.2.4/TidyDensity/man/figures/tidy_density_logo.png                   |only
 TidyDensity-1.2.5/TidyDensity/DESCRIPTION                                         |   18 
 TidyDensity-1.2.5/TidyDensity/MD5                                                 |   70 
 TidyDensity-1.2.5/TidyDensity/NAMESPACE                                           |    1 
 TidyDensity-1.2.5/TidyDensity/NEWS.md                                             |   14 
 TidyDensity-1.2.5/TidyDensity/R/est-param-burr.R                                  |only
 TidyDensity-1.2.5/TidyDensity/R/util-distribution-comparison.R                    |  782 +++++-----
 TidyDensity-1.2.5/TidyDensity/README.md                                           |   28 
 TidyDensity-1.2.5/TidyDensity/inst/doc/getting-started.html                       |   42 
 TidyDensity-1.2.5/TidyDensity/man/figures/README-more_than_nine_simulations-1.png |binary
 TidyDensity-1.2.5/TidyDensity/man/figures/README-more_than_nine_simulations-2.png |binary
 TidyDensity-1.2.5/TidyDensity/man/figures/README-more_than_nine_simulations-3.png |binary
 TidyDensity-1.2.5/TidyDensity/man/figures/README-more_than_nine_simulations-4.png |binary
 TidyDensity-1.2.5/TidyDensity/man/figures/README-plot_density-1.png               |binary
 TidyDensity-1.2.5/TidyDensity/man/figures/README-plot_density-2.png               |binary
 TidyDensity-1.2.5/TidyDensity/man/figures/README-plot_density-3.png               |binary
 TidyDensity-1.2.5/TidyDensity/man/figures/README-plot_density-4.png               |binary
 TidyDensity-1.2.5/TidyDensity/man/figures/logo.png                                |only
 TidyDensity-1.2.5/TidyDensity/man/tidy_burr.Rd                                    |    3 
 TidyDensity-1.2.5/TidyDensity/man/tidy_distribution_comparison.Rd                 |    9 
 TidyDensity-1.2.5/TidyDensity/man/tidy_inverse_burr.Rd                            |    3 
 TidyDensity-1.2.5/TidyDensity/man/util_bernoulli_param_estimate.Rd                |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_beta_param_estimate.Rd                     |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_binomial_param_estimate.Rd                 |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_burr_param_estimate.Rd                     |only
 TidyDensity-1.2.5/TidyDensity/man/util_cauchy_param_estimate.Rd                   |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_exponential_param_estimate.Rd              |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_gamma_param_estimate.Rd                    |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_geometric_param_estimate.Rd                |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_hypergeometric_param_estimate.Rd           |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_logistic_param_estimate.Rd                 |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_lognormal_param_estimate.Rd                |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_negative_binomial_param_estimate.Rd        |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_normal_param_estimate.Rd                   |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_pareto_param_estimate.Rd                   |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_poisson_param_estimate.Rd                  |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_uniform_param_estimate.Rd                  |    1 
 TidyDensity-1.2.5/TidyDensity/man/util_weibull_param_estimate.Rd                  |    1 
 38 files changed, 517 insertions(+), 469 deletions(-)

More information about TidyDensity at CRAN
Permanent link

Package tidycensus updated to version 1.3.4 with previous version 1.3.2 dated 2023-01-30

Title: Load US Census Boundary and Attribute Data as 'tidyverse' and 'sf'-Ready Data Frames
Description: An integrated R interface to several United States Census Bureau APIs (<https://www.census.gov/data/developers/data-sets.html>) and the US Census Bureau's geographic boundary files. Allows R users to return Census and ACS data as tidyverse-ready data frames, and optionally returns a list-column with feature geometry for mapping and spatial analysis.
Author: Kyle Walker [aut, cre], Matt Herman [aut], Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>

Diff between tidycensus versions 1.3.2 dated 2023-01-30 and 1.3.4 dated 2023-05-19

 DESCRIPTION            |   10 
 MD5                    |   32 +-
 NAMESPACE              |    1 
 R/acs.R                |   23 -
 R/census.R             |    2 
 R/estimates.R          |  678 +++++++++++++++++++++++++++++++++----------------
 R/helpers.R            |   18 +
 R/load_data.R          |    2 
 R/pums.R               |    5 
 R/tidycensus-package.R |    2 
 R/utils.R              |   18 +
 R/zzz.r                |    5 
 README.md              |    6 
 data/fips_codes.rda    |binary
 man/fips_codes.Rd      |    2 
 man/get_decennial.Rd   |    2 
 man/get_estimates.Rd   |   32 +-
 17 files changed, 570 insertions(+), 268 deletions(-)

More information about tidycensus at CRAN
Permanent link

Package RIA updated to version 1.7.1 with previous version 1.7.0 dated 2023-04-07

Title: Radiomics Image Analysis Toolbox for Medial Images
Description: Radiomics image analysis toolbox for 2D and 3D radiological images. RIA supports DICOM, NIfTI, nrrd and npy (numpy array) file formats. RIA calculates first-order, gray level co-occurrence matrix, gray level run length matrix and geometry-based statistics. Almost all calculations are done using vectorized formulas to optimize run speeds. Calculation of several thousands of parameters only takes minutes on a single core of a conventional PC. Detailed methodology has been published: Kolossvary et al. Circ: Cardiovascular Imaging. 2017;10(12):e006843 <doi: 10.1161/CIRCIMAGING.117.006843>.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <marton.kolossvary@gmail.com>

Diff between RIA versions 1.7.0 dated 2023-04-07 and 1.7.1 dated 2023-05-19

 DESCRIPTION |   13 ++++++-------
 MD5         |    4 ++--
 README.md   |    3 ++-
 3 files changed, 10 insertions(+), 10 deletions(-)

More information about RIA at CRAN
Permanent link

New package rcaiman with initial version 1.1.2
Package: rcaiman
Title: CAnopy IMage ANalysis
Version: 1.1.2
Date: 2023-05-19
Description: Classify hemispherical photographs of the plant canopy with algorithms specially developed for such a task and well documented in Díaz and Lencinas (2015) <doi:10.1109/lgrs.2015.2425931> and Díaz and Lencinas (2018) <doi:10.1139/cjfr-2018-0006>. It supports non-circular hemispherical photography, such as those acquired with 15mm lenses or with auxiliary fish-eye lenses attached to mobile devices. For smartphone-based hemispherical photography see Díaz (2023) <doi:10.1111/2041-210x.14059>. Most of the functions also support restricted view photography.
License: GPL-3
BugReports: https://github.com/GastonMauroDiaz/rcaiman/issues
Encoding: UTF-8
Depends: filenamer, magrittr, colorspace, terra
Imports: methods, testthat, pracma, stats, utils, Rdpack, spatial, lidR
Suggests: autothresholdr, conicfit, EBImage, bbmle, imager
NeedsCompilation: no
Packaged: 2023-05-19 13:51:28 UTC; gdiaz
Author: Gaston Mauro Diaz [aut, cre]
Maintainer: Gaston Mauro Diaz <gastonmaurodiaz@gmail.com>
Repository: CRAN
Date/Publication: 2023-05-19 14:30:07 UTC

More information about rcaiman at CRAN
Permanent link

Package CP updated to version 1.8 with previous version 1.7 dated 2023-05-17

Title: Conditional Power Calculations
Description: Functions for calculating the conditional power for different models in survival time analysis within randomized clinical trials with two different treatments to be compared and survival as an endpoint.
Author: Andreas Kuehnapfel
Maintainer: Andreas Kuehnapfel <andreas.kuehnapfel@imise.uni-leipzig.de>

Diff between CP versions 1.7 dated 2023-05-17 and 1.8 dated 2023-05-19

 DESCRIPTION       |    6 +++---
 MD5               |    5 +++--
 data/test.txt     |only
 man/CP-package.Rd |    2 +-
 4 files changed, 7 insertions(+), 6 deletions(-)

More information about CP at CRAN
Permanent link

Package conf updated to version 1.8.1 with previous version 1.8.0 dated 2023-05-17

Title: Visualization and Analysis of Statistical Measures of Confidence
Description: Enables: (1) plotting two-dimensional confidence regions, (2) coverage analysis of confidence region simulations, (3) calculating confidence intervals and the associated actual coverage for binomial proportions, and (4) calculating the support values and the probability mass function of the Kaplan-Meier product-limit estimator. Each is given in greater detail next. (1) Plots the two-dimensional confidence region for probability distribution parameters (supported distribution suffixes: cauchy, gamma, invgauss, logis, llogis, lnorm, norm, unif, weibull) corresponding to a user-given complete or right-censored dataset and level of significance. The crplot() algorithm plots more points in areas of greater curvature to ensure a smooth appearance throughout the confidence region boundary. An alternative heuristic plots a specified number of points at roughly uniform intervals along its boundary. Both heuristics build upon the radial profile log-likelihood ratio technique for plotting confi [...truncated...]
Author: Christopher Weld [aut, cre] , Kexin Feng [aut], Hayeon Park [aut], Yuxin Qin [aut], Heather Sasinowska [aut], Lawrence Leemis [aut], Yuan Chang [ctb], Brock Crook [ctb], Chris Kuebler [ctb], Andrew Loh [ctb], Xin Zhang [ctb]
Maintainer: Christopher Weld <ceweld@email.wm.edu>

Diff between conf versions 1.8.0 dated 2023-05-17 and 1.8.1 dated 2023-05-19

 DESCRIPTION                   |   24 ++++++++++++------------
 MD5                           |    8 ++++----
 inst/doc/coversim.html        |    4 ++--
 inst/doc/crplot.html          |    4 ++--
 inst/doc/crplot_advanced.html |    4 ++--
 5 files changed, 22 insertions(+), 22 deletions(-)

More information about conf at CRAN
Permanent link

Package foundry updated to version 0.13.0 with previous version 0.12.0 dated 2023-02-27

Title: 'Palantir Foundry' Software Development Kit
Description: Interface to 'Palantir Foundry', including reading and writing structured or unstructured datasets, and more <https://www.palantir.com/platforms/foundry/>.
Author: Alexandre Guinaudeau [aut, cre], Palantir Technologies [aut, cph]
Maintainer: Alexandre Guinaudeau <aguinaudeau@palantir.com>

Diff between foundry versions 0.12.0 dated 2023-02-27 and 0.13.0 dated 2023-05-19

 DESCRIPTION                               |    6 +++---
 MD5                                       |   16 ++++++++--------
 R/api_client.R                            |    6 ++++--
 R/config.R                                |   15 +++++++++++++--
 R/datasets.R                              |    2 +-
 R/datasets_api_client.R                   |    3 ++-
 R/utils.R                                 |    5 +++++
 README.md                                 |   10 ++++++++--
 tests/testthat/test-datasets_api_client.R |    3 ++-
 9 files changed, 46 insertions(+), 20 deletions(-)

More information about foundry at CRAN
Permanent link

Package fdacluster updated to version 0.2.1 with previous version 0.2.0 dated 2023-05-18

Title: Joint Clustering and Alignment of Functional Data
Description: Implementations of the k-means, hierarchical agglomerative and DBSCAN clustering methods for functional data which allows for jointly aligning and clustering curves. It supports functional data defined on one-dimensional domains but possibly evaluating in multivariate codomains. It supports functional data defined in arrays but also via the 'fd' and 'funData' classes for functional data defined in the 'fda' and 'funData' packages respectively. It currently supports shift, dilation and affine warping functions for functional data defined on the real line and uses the SRSF framework to handle boundary-preserving warping for functional data defined on a specific interval. Main reference for the k-means algorithm: Sangalli L.M., Secchi P., Vantini S., Vitelli V. (2010) "k-mean alignment for curve clustering" <doi:10.1016/j.csda.2009.12.008>. Main reference for the SRSF framework: Tucker, J. D., Wu, W., & Srivastava, A. (2013) "Generative models for functional data using phase and [...truncated...]
Author: Aymeric Stamm [aut, cre] , Laura Sangalli [ctb], Piercesare Secchi [ctb], Simone Vantini [ctb], Valeria Vitelli [ctb], Alessandro Zito [ctb]
Maintainer: Aymeric Stamm <aymeric.stamm@cnrs.fr>

Diff between fdacluster versions 0.2.0 dated 2023-05-18 and 0.2.1 dated 2023-05-19

 DESCRIPTION               |   36 ++++++++++++++++++------------------
 MD5                       |   10 +++++-----
 NEWS.md                   |    5 +++++
 README.md                 |   15 ++++++++-------
 man/fdacluster-package.Rd |    2 +-
 src/kmaModelClass.cpp     |    3 ++-
 6 files changed, 39 insertions(+), 32 deletions(-)

More information about fdacluster at CRAN
Permanent link

Package eurocordexr updated to version 0.2.3 with previous version 0.2.2 dated 2021-08-19

Title: Makes it Easier to Work with Daily 'netCDF' from EURO-CORDEX RCMs
Description: Daily 'netCDF' data from e.g. regional climate models (RCMs) are not trivial to work with. This package, which relies on 'data.table', makes it easier to deal with large data from RCMs, such as from EURO-CORDEX (<https://www.euro-cordex.net/>, <https://cordex.org/data-access/>). It has functions to extract single grid cells from rotated pole grids as well as the whole array in long format. Can handle non-standard calendars (360, noleap) and interpolate them to a standard one. Potentially works with many CF-conform 'netCDF' files.
Author: Michael Matiu [aut, cre]
Maintainer: Michael Matiu <michaelmatiu@gmail.com>

Diff between eurocordexr versions 0.2.2 dated 2021-08-19 and 0.2.3 dated 2023-05-19

 DESCRIPTION                  |    8 ++--
 MD5                          |   27 ++++++++--------
 NAMESPACE                    |    2 +
 NEWS.md                      |   12 +++++++
 R/check_inventory.R          |   63 ++++++++++++++++++++++++++-----------
 R/get_inventory.R            |   72 +++++++++++++++++++++++++++++++++++++------
 R/get_varnames.R             |only
 R/globals.R                  |    3 +
 R/nc_grid_to_dt.R            |   69 ++++++++++++++++++++++++++++++++---------
 R/rotpole_nc_point_to_dt.R   |   16 +++++++++
 README.md                    |   59 +++++++++++++++++++++++++++--------
 man/check_inventory.Rd       |   11 ++++--
 man/get_inventory.Rd         |   15 +++-----
 man/get_varnames.Rd          |only
 man/nc_grid_to_dt.Rd         |   28 ++++++++++------
 man/print.eurocordexr_inv.Rd |only
 16 files changed, 289 insertions(+), 96 deletions(-)

More information about eurocordexr at CRAN
Permanent link

New package bcv with initial version 1.0.2
Package: bcv
Version: 1.0.2
Date: 2023-05-19
Title: Cross-Validation for the SVD (Bi-Cross-Validation)
Description: Methods for choosing the rank of an SVD (singular value decomposition) approximation via cross validation. The package provides both Gabriel-style "block" holdouts and Wold-style "speckled" holdouts. It also includes an implementation of the SVDImpute algorithm. For more information about Bi-cross-validation, see Owen & Perry's 2009 AoAS article (at <arXiv:0908.2062>) and Perry's 2009 PhD thesis (at <arXiv:0909.3052>).
License: BSD_3_clause + file LICENSE
URL: https://github.com/michbur/bcv
BugReports: https://github.com/michbur/bcv/issues
Encoding: UTF-8
NeedsCompilation: yes
Repository: CRAN
Suggests: spelling
Language: en-US
Packaged: 2023-05-19 10:10:02 UTC; michbur
Author: Michal Burdukiewicz [cre, ctb] , Patrick O. Perry [aut, cph], Seyed Morteza Najibi [ctb]
Maintainer: Michal Burdukiewicz <michalburdukiewicz@gmail.com>
Date/Publication: 2023-05-19 13:50:02 UTC

More information about bcv at CRAN
Permanent link

Package aopdata updated to version 1.0.2 with previous version 1.0.1 dated 2022-08-31

Title: Data from the 'Access to Opportunities Project (AOP)'
Description: Download data from the 'Access to Opportunities Project (AOP)'. The 'aopdata' package brings annual estimates of access to employment, health, education and social assistance services by transport mode, as well as data on the spatial distribution of population, jobs, health care, schools and social assistance facilities at a fine spatial resolution for all cities included in the project. More info on the 'AOP' website <https://www.ipea.gov.br/acessooportunidades/en/>.
Author: Rafael H. M. Pereira [aut, cre] , Daniel Herszenhut [aut] , Marcus Saraiva [aut] , Carlos Kaue Vieira Braga [aut] , Diego Bogado Tomasiello [ctb], Joao Bazzo [ctb], Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>

Diff between aopdata versions 1.0.1 dated 2022-08-31 and 1.0.2 dated 2023-05-19

 DESCRIPTION                     |    9 +-
 MD5                             |   28 ++++----
 NEWS.md                         |   10 ++
 R/download_metadata.R           |    2 
 R/utils.R                       |    6 -
 README.md                       |    4 -
 build/vignette.rds              |binary
 inst/CITATION                   |   46 +++++++------
 inst/doc/access_inequality.html |  125 ++++++++++++++++++-------------------
 inst/doc/access_maps.html       |  134 +++++++++++++++++++---------------------
 inst/doc/data_dic_en.html       |   18 ++---
 inst/doc/data_dic_pt.html       |   18 ++---
 inst/doc/intro_to_aopdata.html  |  115 +++++++++++++++++-----------------
 inst/doc/landuse_maps.html      |  115 +++++++++++++++++-----------------
 inst/doc/population_maps.html   |  115 +++++++++++++++++-----------------
 15 files changed, 375 insertions(+), 370 deletions(-)

More information about aopdata at CRAN
Permanent link

Package sdcTable updated to version 0.32.5 with previous version 0.32.4 dated 2022-09-22

Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in tabular data such as primary and secondary cell suppression as described for example in Hundepol et al. (2012) <doi:10.1002/9781118348239> are covered in this package.
Author: Bernhard Meindl [aut, cre]
Maintainer: Bernhard Meindl <bernhard.meindl@gmail.com>

Diff between sdcTable versions 0.32.4 dated 2022-09-22 and 0.32.5 dated 2023-05-19

 sdcTable-0.32.4/sdcTable/vignettes/sdcTable_cache |only
 sdcTable-0.32.5/sdcTable/DESCRIPTION              |    8 -
 sdcTable-0.32.5/sdcTable/MD5                      |   12 -
 sdcTable-0.32.5/sdcTable/R/helper_functions.r     |    2 
 sdcTable-0.32.5/sdcTable/build/vignette.rds       |binary
 sdcTable-0.32.5/sdcTable/inst/doc/sdcTable.html   |  147 +++++++++++-----------
 6 files changed, 85 insertions(+), 84 deletions(-)

More information about sdcTable at CRAN
Permanent link

Package pmxcode updated to version 0.1.1 with previous version 0.1 dated 2023-04-13

Title: Create Pharmacometric Models
Description: Provides a user interface to create or modify pharmacometric models for various modeling and simulation software platforms.
Author: Sebastien Bihorel [cre, aut]
Maintainer: Sebastien Bihorel <sb.pmlab@gmail.com>

Diff between pmxcode versions 0.1 dated 2023-04-13 and 0.1.1 dated 2023-05-19

 DESCRIPTION      |    6 +++---
 MD5              |    8 ++++----
 NEWS.md          |    5 +++++
 R/utils_common.R |   12 +++++++-----
 R/utils_nonmem.R |   20 +++++++++++++-------
 5 files changed, 32 insertions(+), 19 deletions(-)

More information about pmxcode at CRAN
Permanent link

Package EDCimport updated to version 0.3.0 with previous version 0.2.1 dated 2022-12-02

Title: Import Data from EDC Software
Description: A convenient toolbox to import data exported from Electronic Data Capture (EDC) software 'TrialMaster' and 'Macro'.
Author: Dan Chaltiel [aut, cre]
Maintainer: Dan Chaltiel <dan.chaltiel@gmail.com>

Diff between EDCimport versions 0.2.1 dated 2022-12-02 and 0.3.0 dated 2023-05-19

 EDCimport-0.2.1/EDCimport/R/base_macro.R                    |only
 EDCimport-0.3.0/EDCimport/DESCRIPTION                       |   15 
 EDCimport-0.3.0/EDCimport/MD5                               |   54 +-
 EDCimport-0.3.0/EDCimport/NAMESPACE                         |   93 +++
 EDCimport-0.3.0/EDCimport/NEWS.md                           |   27 +
 EDCimport-0.3.0/EDCimport/R/7zip.R                          |    6 
 EDCimport-0.3.0/EDCimport/R/EDCimport-package.R             |   37 -
 EDCimport-0.3.0/EDCimport/R/data.R                          |only
 EDCimport-0.3.0/EDCimport/R/helpers.R                       |  152 +++++
 EDCimport-0.3.0/EDCimport/R/sas_format.R                    |  116 ++--
 EDCimport-0.3.0/EDCimport/R/split_mixed.R                   |only
 EDCimport-0.3.0/EDCimport/R/swimmerplot.R                   |only
 EDCimport-0.3.0/EDCimport/R/todo_base_macro.R               |only
 EDCimport-0.3.0/EDCimport/R/todo_read_all_csv.R             |only
 EDCimport-0.3.0/EDCimport/R/trialmaster.R                   |  156 ++++--
 EDCimport-0.3.0/EDCimport/R/utils.R                         |  191 ++++---
 EDCimport-0.3.0/EDCimport/README.md                         |   57 +-
 EDCimport-0.3.0/EDCimport/inst/IMPORTLIST                   |only
 EDCimport-0.3.0/EDCimport/inst/WORDLIST                     |    5 
 EDCimport-0.3.0/EDCimport/man/data_example.Rd               |only
 EDCimport-0.3.0/EDCimport/man/edc_swimmerplot.Rd            |only
 EDCimport-0.3.0/EDCimport/man/extend_lookup.Rd              |only
 EDCimport-0.3.0/EDCimport/man/get_datasets.Rd               |only
 EDCimport-0.3.0/EDCimport/man/get_key_cols.Rd               |only
 EDCimport-0.3.0/EDCimport/man/read_tm_all_xpt.Rd            |   27 -
 EDCimport-0.3.0/EDCimport/man/read_trialmaster.Rd           |   27 -
 EDCimport-0.3.0/EDCimport/man/reexports.Rd                  |    4 
 EDCimport-0.3.0/EDCimport/man/split_mixed_datasets.Rd       |only
 EDCimport-0.3.0/EDCimport/man/unify.Rd                      |only
 EDCimport-0.3.0/EDCimport/tests/testthat/_snaps             |only
 EDCimport-0.3.0/EDCimport/tests/testthat/helper-init.R      |  199 ++++---
 EDCimport-0.3.0/EDCimport/tests/testthat/test-plot.R        |only
 EDCimport-0.3.0/EDCimport/tests/testthat/test-trialmaster.R |  122 ++--
 EDCimport-0.3.0/EDCimport/tests/testthat/test-utils.R       |  308 +++++++-----
 34 files changed, 1089 insertions(+), 507 deletions(-)

More information about EDCimport at CRAN
Permanent link

New package vol2birdR with initial version 1.0.1
Package: vol2birdR
Title: Vertical Profiles of Biological Signals in Weather Radar Data
Version: 1.0.1
Date: 2023-05-17
Description: 'R' implementation of the 'vol2bird' software for generating vertical profiles of birds and other biological signals in weather radar data. See Dokter et al. (2011) <doi:10.1098/rsif.2010.0116> for a paper describing the methodology.
License: LGPL (>= 3)
Language: en-US
URL: https://github.com/adokter/vol2birdR/, https://adriaandokter.com/vol2bird/
BugReports: https://github.com/adokter/vol2birdR/issues
Imports: assertthat, methods, pkgbuild, Rcpp (>= 1.0.4), rlang, utils, withr
LinkingTo: Rcpp, RcppGSL
VignetteBuilder: knitr
SystemRequirements: GNU make, GSL, HDF5, PROJ
NeedsCompilation: yes
RcppModules: RaveIO, PolarVolume, Vol2Bird, Vol2BirdConfig
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
Copyright: file COPYRIGHTS
Encoding: UTF-8
Packaged: 2023-05-17 17:15:19 UTC; alexandertedeschi
Author: Anders Henja [aut] , Adriaan M. Dokter [aut, cre] , Alexander Tedeschi [ctb] , Tsung-Yu Lin [ctb] , Subranshu Maji [ctb] , Daniel Sheldon [ctb] , Bart Kranstauber [ctb] , Jurriaan H. Spaaks [ctb] , Lourens Veen [ctb] , Iwan Holleman [ctb] , Hidde Lei [...truncated...]
Maintainer: Adriaan M. Dokter <amd427@cornell.edu>
Repository: CRAN
Date/Publication: 2023-05-19 09:50:02 UTC

More information about vol2birdR at CRAN
Permanent link

Package surveillance updated to version 1.21.1 with previous version 1.21.0 dated 2023-03-15

Title: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena
Description: Statistical methods for the modeling and monitoring of time series of counts, proportions and categorical data, as well as for the modeling of continuous-time point processes of epidemic phenomena. The monitoring methods focus on aberration detection in count data time series from public health surveillance of communicable diseases, but applications could just as well originate from environmetrics, reliability engineering, econometrics, or social sciences. The package implements many typical outbreak detection procedures such as the (improved) Farrington algorithm, or the negative binomial GLR-CUSUM method of Hoehle and Paul (2008) <doi:10.1016/j.csda.2008.02.015>. A novel CUSUM approach combining logistic and multinomial logistic modeling is also included. The package contains several real-world data sets, the ability to simulate outbreak data, and to visualize the results of the monitoring in a temporal, spatial or spatio-temporal fashion. A recent overview of the available mon [...truncated...]
Author: Michael Hoehle [aut, ths] , Sebastian Meyer [aut, cre] , Michaela Paul [aut], Leonhard Held [ctb, ths], Howard Burkom [ctb], Thais Correa [ctb], Mathias Hofmann [ctb], Christian Lang [ctb], Juliane Manitz [ctb], Andrea Riebler [ctb], Daniel Sabanes B [...truncated...]
Maintainer: Sebastian Meyer <seb.meyer@fau.de>

Diff between surveillance versions 1.21.0 dated 2023-03-15 and 1.21.1 dated 2023-05-19

 DESCRIPTION                            |  140 ++++++++++-----------
 MD5                                    |  214 ++++++++++++++++-----------------
 NEWS.md                                |    6 
 R/addSeason2formula.R                  |   10 -
 R/algo_hmm.R                           |    2 
 R/backprojNP.R                         |    2 
 R/calibration.R                        |   10 -
 R/calibration_null.R                   |   10 -
 R/checkDerivatives.R                   |   10 -
 R/epidata.R                            |   12 -
 R/epidataCS.R                          |   10 -
 R/epidataCS_aggregate.R                |   12 -
 R/epidataCS_animate.R                  |   10 -
 R/epidataCS_methods.R                  |   10 -
 R/epidataCS_plot.R                     |   10 -
 R/epidata_animate.R                    |   10 -
 R/epidata_plot.R                       |   10 -
 R/gd.R                                 |    2 
 R/glm_epidataCS.R                      |   10 -
 R/gpc.poly-methods.R                   |   10 -
 R/graphs.R                             |   10 -
 R/hhh4.R                               |   11 -
 R/hhh4_W.R                             |   12 -
 R/hhh4_W_np.R                          |   10 -
 R/hhh4_W_powerlaw.R                    |   10 -
 R/hhh4_calibration.R                   |   10 -
 R/hhh4_methods.R                       |   12 -
 R/hhh4_plot.R                          |   14 --
 R/hhh4_simulate.R                      |   10 -
 R/hhh4_simulate_plot.R                 |   10 -
 R/hhh4_simulate_scores.R               |   10 -
 R/intersectPolyCircle.R                |   11 -
 R/knox.R                               |   10 -
 R/newtonRaphson.R                      |   10 -
 R/options.R                            |   17 +-
 R/permutationTest.R                    |   22 +--
 R/pit.R                                |   10 -
 R/spatial_tools.R                      |    5 
 R/stK.R                                |   26 +---
 R/sts_animate.R                        |   10 -
 R/stsplot_space.R                      |   12 -
 R/stsplot_spacetime.R                  |   10 -
 R/stsplot_time.R                       |   10 -
 R/twinSIR.R                            |   10 -
 R/twinSIR_helper.R                     |   10 -
 R/twinSIR_intensity.R                  |   35 ++---
 R/twinSIR_methods.R                    |   26 +---
 R/twinSIR_profile.R                    |   10 -
 R/twinSIR_simulation.R                 |   14 --
 R/twinstim.R                           |   10 -
 R/twinstim_epitest.R                   |   10 -
 R/twinstim_iafplot.R                   |   22 +--
 R/twinstim_intensity.R                 |    3 
 R/twinstim_methods.R                   |   14 --
 R/twinstim_siaf.R                      |   10 -
 R/twinstim_siaf_gaussian.R             |   10 -
 R/twinstim_siaf_powerlaw.R             |   10 -
 R/twinstim_siaf_powerlaw1.R            |   10 -
 R/twinstim_siaf_powerlawL.R            |   10 -
 R/twinstim_siaf_step.R                 |   12 -
 R/twinstim_siaf_student.R              |   10 -
 R/twinstim_simulation.R                |   10 -
 R/twinstim_step.R                      |   18 +-
 R/twinstim_tiaf.R                      |   10 -
 R/twinstim_tiaf_exponential.R          |   10 -
 R/twinstim_tiaf_step.R                 |   10 -
 R/untie.R                              |   10 -
 R/zzz.R                                |    9 -
 build/partial.rdb                      |binary
 build/vignette.rds                     |binary
 inst/CITATION                          |    4 
 inst/doc/glrnb.R                       |   26 +++-
 inst/doc/glrnb.Rnw                     |   22 ++-
 inst/doc/glrnb.pdf                     |binary
 inst/doc/hhh4.R                        |   34 +++--
 inst/doc/hhh4.Rnw                      |   11 +
 inst/doc/hhh4.pdf                      |binary
 inst/doc/hhh4_spacetime.Rnw            |   11 -
 inst/doc/hhh4_spacetime.pdf            |binary
 inst/doc/monitoringCounts.pdf          |binary
 inst/doc/surveillance.pdf              |binary
 inst/doc/twinSIR.Rnw                   |    1 
 inst/doc/twinSIR.pdf                   |binary
 inst/doc/twinstim.Rnw                  |   11 -
 inst/doc/twinstim.pdf                  |binary
 man/algo.hmm.Rd                        |   11 -
 man/backprojNP.Rd                      |   13 --
 man/discpoly.Rd                        |   28 +---
 man/epidataCS.Rd                       |   10 -
 man/formatDate.Rd                      |    2 
 man/hhh4.Rd                            |    3 
 man/hhh4_simulate_scores.Rd            |    2 
 man/hhh4_validation.Rd                 |    3 
 man/imdepi.Rd                          |    2 
 man/imdepifit.Rd                       |   22 +--
 man/intersectPolyCircle.Rd             |    2 
 man/makeControl.Rd                     |   10 -
 man/pairedbinCUSUM.Rd                  |   13 --
 man/scores.Rd                          |    3 
 man/stsNClist_animate.Rd               |   20 +--
 man/sts_observation.Rd                 |    6 
 man/surveillance-package.Rd            |    2 
 tests/testthat/test-hhh4+derivatives.R |   15 ++
 vignettes/glrnb.Rnw                    |   22 ++-
 vignettes/hhh4.Rnw                     |   11 +
 vignettes/hhh4_spacetime.Rnw           |   11 -
 vignettes/twinSIR.Rnw                  |    1 
 vignettes/twinstim.Rnw                 |   11 -
 108 files changed, 676 insertions(+), 762 deletions(-)

More information about surveillance at CRAN
Permanent link

Package PlotTools updated to version 0.2.0 with previous version 0.1.0 dated 2023-04-18

Title: Add Continuous Legends to Plots
Description: Annotate plots with legends for continuous variables and colour spectra using the base graphics plotting tools; and manipulate irregular polygons.
Author: Martin R. Smith [aut, cre, cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>

Diff between PlotTools versions 0.1.0 dated 2023-04-18 and 0.2.0 dated 2023-05-19

 DESCRIPTION                    |   14 +--
 MD5                            |   13 ++-
 NAMESPACE                      |    4 
 NEWS.md                        |    6 +
 R/PlotTools-package.R          |only
 R/Polygons.R                   |only
 README.md                      |  169 ++++++++++++++++++++---------------------
 man/PlotTools-package.Rd       |only
 man/Polygon-Geometry.Rd        |only
 tests/testthat/test-Polygons.R |only
 10 files changed, 111 insertions(+), 95 deletions(-)

More information about PlotTools at CRAN
Permanent link

Package NNS updated to version 0.9.9 with previous version 0.9.8 dated 2023-05-17

Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre], Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>

Diff between NNS versions 0.9.8 dated 2023-05-17 and 0.9.9 dated 2023-05-19

 DESCRIPTION                                         |    8 ++--
 MD5                                                 |   38 ++++++++++----------
 NAMESPACE                                           |    1 
 R/ARMA.R                                            |    4 +-
 R/Multivariate_Regression.R                         |   21 +++++++----
 R/NNS_Distance.R                                    |    5 +-
 R/Regression.R                                      |   27 +++++---------
 R/Stack.R                                           |    8 +++-
 R/gvload.R                                          |    2 -
 README.md                                           |    4 +-
 inst/doc/NNSvignette_Classification.R               |    9 ++++
 inst/doc/NNSvignette_Classification.Rmd             |    9 ++++
 inst/doc/NNSvignette_Classification.html            |   19 +++++++---
 inst/doc/NNSvignette_Clustering_and_Regression.R    |    2 -
 inst/doc/NNSvignette_Clustering_and_Regression.Rmd  |    2 -
 inst/doc/NNSvignette_Clustering_and_Regression.html |   16 ++++----
 inst/doc/NNSvignette_Forecasting.html               |    2 -
 vignettes/NNSvignette_Classification.Rmd            |    9 ++++
 vignettes/NNSvignette_Clustering_and_Regression.Rmd |    2 -
 vignettes/images/ARMA_ex.png                        |binary
 20 files changed, 116 insertions(+), 72 deletions(-)

More information about NNS at CRAN
Permanent link

Package CausalKinetiX (with last version 0.2.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-06-20 0.2.1
2019-06-10 0.2
2019-04-26 0.1

Permanent link
Package sundialr (with last version 0.1.4.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-05-16 0.1.4.1
2020-05-31 0.1.4
2019-06-09 0.1.3
2019-01-12 0.1.2

Permanent link
Package kidsides (with last version 0.4.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-01-22 0.4.1
2023-01-13 0.4.0

Permanent link
Package redland updated to version 1.0.17-16.1 with previous version 1.0.17-16 dated 2022-01-19

Title: RDF Library Bindings in R
Description: Provides methods to parse, query and serialize information stored in the Resource Description Framework (RDF). RDF is described at <https://www.w3.org/TR/rdf-primer/>. This package supports RDF by implementing an R interface to the Redland RDF C library, described at <https://librdf.org/docs/api/index.html>. In brief, RDF provides a structured graph consisting of Statements composed of Subject, Predicate, and Object Nodes.
Author: Matthew B. Jones [aut, cre], Peter Slaughter [aut], Jeroen Ooms [aut], Carl Boettiger [aut], Scott Chamberlain [aut], David Beckett [cph], University of Bristol [cph], Regents of the University of California [cph]
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>

Diff between redland versions 1.0.17-16 dated 2022-01-19 and 1.0.17-16.1 dated 2023-05-19

 DESCRIPTION   |    6 +++---
 MD5           |    4 ++--
 src/redland.c |    6 +++---
 3 files changed, 8 insertions(+), 8 deletions(-)

More information about redland at CRAN
Permanent link

Package Rdsdp updated to version 1.0.5.2.1 with previous version 1.0.5.2 dated 2022-05-24

Title: R Interface to DSDP Semidefinite Programming Library
Description: R interface to DSDP semidefinite programming library. The DSDP software is a free open source implementation of an interior-point method for semidefinite programming. It provides primal and dual solutions, exploits low-rank structure and sparsity in the data, and has relatively low memory requirements for an interior-point method.
Author: Zhisu Zhu, Yinyu Ye
Maintainer: Zhisu Zhu <zhuzhisu@alumni.stanford.edu>

Diff between Rdsdp versions 1.0.5.2 dated 2022-05-24 and 1.0.5.2.1 dated 2023-05-19

 DESCRIPTION                          |    6 +++---
 MD5                                  |   14 +++++++-------
 src/dsdp/include/dsdp5.h             |    2 +-
 src/dsdp/src/solver/dsdpcops.c       |    4 ++--
 src/dsdp/src/solver/dsdpsetoptions.c |    2 +-
 src/dsdp/src/sys/dsdperror.c         |    2 +-
 src/dsdp/src/vecmat/sdpalloc.c       |    2 +-
 src/dsdp/src/vecmat/sdpexit.c        |    2 +-
 8 files changed, 17 insertions(+), 17 deletions(-)

More information about Rdsdp at CRAN
Permanent link

Package pls updated to version 2.8-2 with previous version 2.8-1 dated 2022-07-16

Title: Partial Least Squares and Principal Component Regression
Description: Multivariate regression methods Partial Least Squares Regression (PLSR), Principal Component Regression (PCR) and Canonical Powered Partial Least Squares (CPPLS).
Author: Kristian Hovde Liland [aut, cre], Bjoern-Helge Mevik [aut], Ron Wehrens [aut], Paul Hiemstra [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>

Diff between pls versions 2.8-1 dated 2022-07-16 and 2.8-2 dated 2023-05-19

 DESCRIPTION             |   10 +-
 MD5                     |   14 +--
 NAMESPACE               |    1 
 R/summaries.R           |  201 +++++++++++++++++++++++++++++++-----------------
 build/vignette.rds      |binary
 inst/NEWS.Rd            |    7 +
 inst/doc/pls-manual.pdf |binary
 man/summary.mvr.Rd      |   12 ++
 8 files changed, 164 insertions(+), 81 deletions(-)

More information about pls at CRAN
Permanent link

Package materialmodifier updated to version 1.2.0 with previous version 1.1.0 dated 2021-08-11

Title: Apply Photo Editing Effects
Description: You can apply image processing effects that modifies the perceived material properties of objects in photos, such as gloss, smoothness, and blemishes. This is an implementation of the algorithm proposed by Boyadzhiev et al. (2015) "Band-Sifting Decomposition for Image Based Material Editing". Documentation and practical tips of the package is available at <https://github.com/tsuda16k/materialmodifier>.
Author: Hiroyuki Tsuda [aut, cre]
Maintainer: Hiroyuki Tsuda <tsuda16k@gmail.com>

Diff between materialmodifier versions 1.1.0 dated 2021-08-11 and 1.2.0 dated 2023-05-19

 DESCRIPTION               |    6 
 MD5                       |   24 +--
 NEWS.md                   |    5 
 R/materialmodifier.R      |  133 ++++++++++++++-----
 README.md                 |  306 +++++++++++++++++++++++++++++++++++-----------
 man/get_BS_energy.Rd      |    9 +
 man/gf_decompose.Rd       |   13 +
 man/gf_decompose_parts.Rd |    4 
 man/gf_decompose_scale.Rd |    6 
 man/gf_reconstruct.Rd     |    5 
 man/im_save.Rd            |    6 
 man/modif.Rd              |   12 +
 man/modif2.Rd             |   21 ++-
 13 files changed, 415 insertions(+), 135 deletions(-)

More information about materialmodifier at CRAN
Permanent link

Package emoa updated to version 0.5-0.2 with previous version 0.5-0.1 dated 2020-03-06

Title: Evolutionary Multiobjective Optimization Algorithms
Description: Collection of building blocks for the design and analysis of evolutionary multiobjective optimization algorithms.
Author: Olaf Mersmann <olafm@statistik.tu-dortmund.de>
Maintainer: Olaf Mersmann <olafm@statistik.tu-dortmund.de>

Diff between emoa versions 0.5-0.1 dated 2020-03-06 and 0.5-0.2 dated 2023-05-19

 DESCRIPTION     |    7 +++----
 MD5             |    6 +++---
 src/utilities.c |    2 +-
 src/utilities.h |    2 +-
 4 files changed, 8 insertions(+), 9 deletions(-)

More information about emoa at CRAN
Permanent link

Package clv updated to version 0.3-2.3 with previous version 0.3-2.2 dated 2020-03-17

Title: Cluster Validation Techniques
Description: Package contains most of the popular internal and external cluster validation methods ready to use for the most of the outputs produced by functions coming from package "cluster". Package contains also functions and examples of usage for cluster stability approach that might be applied to algorithms implemented in "cluster" package as well as user defined clustering algorithms.
Author: Lukasz Nieweglowski <wookashn@gmail.com>
Maintainer: Lukasz Nieweglowski <wookashn@gmail.com>

Diff between clv versions 0.3-2.2 dated 2020-03-17 and 0.3-2.3 dated 2023-05-19

 DESCRIPTION              |    6 +++---
 MD5                      |    4 ++--
 src/optimal_assignment.c |    2 +-
 3 files changed, 6 insertions(+), 6 deletions(-)

More information about clv at CRAN
Permanent link

Package castor updated to version 1.7.10 with previous version 1.7.9 dated 2023-04-18

Title: Efficient Phylogenetics on Large Trees
Description: Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.
Author: Stilianos Louca
Maintainer: Stilianos Louca <louca.research@gmail.com>

Diff between castor versions 1.7.9 dated 2023-04-18 and 1.7.10 dated 2023-05-19

 DESCRIPTION                      |   10 +++++-----
 MD5                              |    4 ++--
 man/mean_abs_change_scalar_OU.Rd |    2 +-
 3 files changed, 8 insertions(+), 8 deletions(-)

More information about castor at CRAN
Permanent link

Package biclust updated to version 2.0.3.1 with previous version 2.0.3 dated 2021-05-25

Title: BiCluster Algorithms
Description: The main function biclust() provides several algorithms to find biclusters in two-dimensional data: Cheng and Church (2000, ISBN:1-57735-115-0), spectral (2003) <doi:10.1101/gr.648603>, plaid model (2005) <doi:10.1016/j.csda.2004.02.003>, xmotifs (2003) <doi:10.1142/9789812776303_0008> and bimax (2006) <doi:10.1093/bioinformatics/btl060>. In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.
Author: Sebastian Kaiser, Rodrigo Santamaria, Tatsiana Khamiakova, Martin Sill, Roberto Theron, Luis Quintales, Friedrich Leisch, Ewoud De Troyer and Sami Leon.
Maintainer: Sebastian Kaiser <dr.sebastian.kaiser@gmail.com>

Diff between biclust versions 2.0.3 dated 2021-05-25 and 2.0.3.1 dated 2023-05-19

 DESCRIPTION  |    6 +++---
 MD5          |    4 ++--
 src/rbimax.c |    2 +-
 3 files changed, 6 insertions(+), 6 deletions(-)

More information about biclust at CRAN
Permanent link

Package crossvalidationCP (with last version 1.0-2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-03-10 1.0-2
2021-12-17 1.0-1
2021-12-06 1.0-0

Permanent link
Package FDRSeg (with last version 1.0-3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-09-20 1.0-3
2017-09-07 1.0-2

Permanent link
Package linearQ (with last version 2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-03-13 2.0
2018-03-01 1.0

Permanent link
Package clampSeg (with last version 1.1-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-01-27 1.1-1
2020-08-25 1.1-0
2019-11-05 1.0-5
2018-05-25 1.0-4
2018-04-12 1.0-3
2017-06-07 1.0-1

Permanent link
Package stepR (with last version 2.1-4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-01-30 2.1-4
2022-05-05 2.1-3
2020-08-26 2.1-1
2020-08-04 2.1-0
2019-11-03 2.0-4
2019-01-27 2.0-3
2018-04-06 2.0-2
2017-05-19 2.0-1
2017-04-20 1.0-7
2016-10-17 1.0-6
2016-10-11 1.0-5.1
2016-10-05 1.0-5
2016-03-24 1.0-4
2015-06-18 1.0-3
2015-04-29 1.0-2
2015-03-04 1.0-1
2015-02-16 1.0

Permanent link
Package predictNMB updated to version 0.2.0 with previous version 0.1.0 dated 2023-04-12

Title: Evaluate Clinical Prediction Models by Net Monetary Benefit
Description: Estimates when and where a model-guided treatment strategy may outperform a treat-all or treat-none approach by Monte Carlo simulation and evaluation of the Net Monetary Benefit. Details can be viewed in Parsons et al. (2023) <doi:10.21105/joss.05328>.
Author: Rex Parsons [aut, cre] , Robin Blythe [aut] , Adrian Barnett [aut] , Emi Tanaka [rev] , Tinula Kariyawasam [rev] , Susanna Cramb [ctb] , Steven McPhail [ctb]
Maintainer: Rex Parsons <rex.parsons94@gmail.com>

Diff between predictNMB versions 0.1.0 dated 2023-04-12 and 0.2.0 dated 2023-05-19

 predictNMB-0.1.0/predictNMB/man/evaluate_cutpoint.Rd                                                |only
 predictNMB-0.2.0/predictNMB/DESCRIPTION                                                             |    6 
 predictNMB-0.2.0/predictNMB/MD5                                                                     |  113 +-
 predictNMB-0.2.0/predictNMB/NAMESPACE                                                               |    6 
 predictNMB-0.2.0/predictNMB/NEWS.md                                                                 |   12 
 predictNMB-0.2.0/predictNMB/R/autoplot.R                                                            |   28 
 predictNMB-0.2.0/predictNMB/R/ce_plot.R                                                             |only
 predictNMB-0.2.0/predictNMB/R/cutpoint_methods.R                                                    |   10 
 predictNMB-0.2.0/predictNMB/R/do_nmb_sim.R                                                          |   84 +
 predictNMB-0.2.0/predictNMB/R/evaluate_cutpoint.R                                                   |   74 +
 predictNMB-0.2.0/predictNMB/R/get_nmb_sampler.R                                                     |   44 
 predictNMB-0.2.0/predictNMB/R/screen_simulation_inputs.R                                            |    4 
 predictNMB-0.2.0/predictNMB/R/utils.R                                                               |    3 
 predictNMB-0.2.0/predictNMB/README.md                                                               |   72 +
 predictNMB-0.2.0/predictNMB/inst/WORDLIST                                                           |    2 
 predictNMB-0.2.0/predictNMB/inst/doc/creating-nmb-functions.R                                       |   43 
 predictNMB-0.2.0/predictNMB/inst/doc/creating-nmb-functions.Rmd                                     |   59 +
 predictNMB-0.2.0/predictNMB/inst/doc/creating-nmb-functions.html                                    |  214 +++-
 predictNMB-0.2.0/predictNMB/inst/doc/detailed-example.R                                             |   50 -
 predictNMB-0.2.0/predictNMB/inst/doc/detailed-example.Rmd                                           |   77 -
 predictNMB-0.2.0/predictNMB/inst/doc/detailed-example.html                                          |  239 ++---
 predictNMB-0.2.0/predictNMB/inst/doc/predictNMB.R                                                   |   59 -
 predictNMB-0.2.0/predictNMB/inst/doc/predictNMB.Rmd                                                 |   64 -
 predictNMB-0.2.0/predictNMB/inst/doc/predictNMB.html                                                |  175 ++-
 predictNMB-0.2.0/predictNMB/inst/doc/summarising-results-with-predictNMB.R                          |   45 
 predictNMB-0.2.0/predictNMB/inst/doc/summarising-results-with-predictNMB.Rmd                        |   67 +
 predictNMB-0.2.0/predictNMB/inst/doc/summarising-results-with-predictNMB.html                       |  467 +++++-----
 predictNMB-0.2.0/predictNMB/man/autoplot.predictNMBscreen.Rd                                        |    6 
 predictNMB-0.2.0/predictNMB/man/autoplot.predictNMBsim.Rd                                           |    8 
 predictNMB-0.2.0/predictNMB/man/ce_plot.Rd                                                          |only
 predictNMB-0.2.0/predictNMB/man/ce_plot.predictNMBsim.Rd                                            |only
 predictNMB-0.2.0/predictNMB/man/do_nmb_sim.Rd                                                       |    4 
 predictNMB-0.2.0/predictNMB/man/evaluate_cutpoint_cost.Rd                                           |only
 predictNMB-0.2.0/predictNMB/man/evaluate_cutpoint_nmb.Rd                                            |only
 predictNMB-0.2.0/predictNMB/man/evaluate_cutpoint_qalys.Rd                                          |only
 predictNMB-0.2.0/predictNMB/man/figures/README-unnamed-chunk-10-1.png                               |only
 predictNMB-0.2.0/predictNMB/man/figures/README-unnamed-chunk-6-1.png                                |binary
 predictNMB-0.2.0/predictNMB/man/figures/README-unnamed-chunk-9-1.png                                |binary
 predictNMB-0.2.0/predictNMB/man/get_nmb_sampler.Rd                                                  |    6 
 predictNMB-0.2.0/predictNMB/man/get_thresholds.Rd                                                   |    3 
 predictNMB-0.2.0/predictNMB/man/screen_simulation_inputs.Rd                                         |    4 
 predictNMB-0.2.0/predictNMB/tests/testthat/_snaps/autoplot/autoplot-predictnmbscreen-obj-dodged.svg |only
 predictNMB-0.2.0/predictNMB/tests/testthat/_snaps/ce_plot                                           |only
 predictNMB-0.2.0/predictNMB/tests/testthat/fixtures/predictNMBsim_ce_object.rds                     |only
 predictNMB-0.2.0/predictNMB/tests/testthat/fixtures/predictNMBsim_ce_uncertain-wtp_object.rds       |only
 predictNMB-0.2.0/predictNMB/tests/testthat/fixtures/predictNMBsim_object.rds                        |binary
 predictNMB-0.2.0/predictNMB/tests/testthat/test-autoplot.R                                          |   42 
 predictNMB-0.2.0/predictNMB/tests/testthat/test-ce_plot.R                                           |only
 predictNMB-0.2.0/predictNMB/tests/testthat/test-cutpoint_methods.R                                  |   29 
 predictNMB-0.2.0/predictNMB/tests/testthat/test-do_nmb_sim.R                                        |   64 +
 predictNMB-0.2.0/predictNMB/tests/testthat/test-get_nmb_sampler.R                                   |    8 
 predictNMB-0.2.0/predictNMB/tests/testthat/test-summary.R                                           |   10 
 predictNMB-0.2.0/predictNMB/vignettes/creating-nmb-functions.Rmd                                    |   59 +
 predictNMB-0.2.0/predictNMB/vignettes/detailed-example.Rmd                                          |   77 -
 predictNMB-0.2.0/predictNMB/vignettes/fixtures/detailed_example-nmb_simulation.rds                  |binary
 predictNMB-0.2.0/predictNMB/vignettes/fixtures/nmb-functions-simulation_foo4.rds                    |only
 predictNMB-0.2.0/predictNMB/vignettes/fixtures/nmb-functions-simulation_res1.rds                    |binary
 predictNMB-0.2.0/predictNMB/vignettes/fixtures/predictNMB-nmb_simulation.rds                        |binary
 predictNMB-0.2.0/predictNMB/vignettes/fixtures/predictNMB-sim_screen_obj.rds                        |binary
 predictNMB-0.2.0/predictNMB/vignettes/predictNMB-vignettes.bib                                      |   32 
 predictNMB-0.2.0/predictNMB/vignettes/predictNMB.Rmd                                                |   64 -
 predictNMB-0.2.0/predictNMB/vignettes/summarising-results-with-predictNMB.Rmd                       |   67 +
 62 files changed, 1651 insertions(+), 849 deletions(-)

More information about predictNMB at CRAN
Permanent link

Package HDtest (with last version 2.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-09-13 2.1
2016-12-30 0.1

Permanent link
Package loadflux (with last version 0.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-11-05 0.0.2

Permanent link
Package fastclime (with last version 1.4.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-05-05 1.4.1.1
2016-04-29 1.4.1
2016-04-18 1.4
2015-04-28 1.2.5
2014-04-29 1.2.4
2013-10-28 1.2.3
2013-09-29 1.2.2
2013-09-28 1.2.1
2013-07-12 1.2
2013-06-19 1.1
2013-05-30 1.0
2013-03-13 0.9
2013-03-12 0.8

Permanent link
Package secrlinear updated to version 1.2.1 with previous version 1.1.4 dated 2021-05-04

Title: Spatially Explicit Capture-Recapture for Linear Habitats
Description: Tools for spatially explicit capture-recapture analysis of animal populations in linear habitats, extending package 'secr'.
Author: Murray Efford
Maintainer: Murray Efford <murray.efford@otago.ac.nz>

Diff between secrlinear versions 1.1.4 dated 2021-05-04 and 1.2.1 dated 2023-05-19

 secrlinear-1.1.4/secrlinear/R/methods.R                         |only
 secrlinear-1.1.4/secrlinear/vignettes/Arvicola.png              |only
 secrlinear-1.1.4/secrlinear/vignettes/capthist.png              |only
 secrlinear-1.1.4/secrlinear/vignettes/covariate.png             |only
 secrlinear-1.1.4/secrlinear/vignettes/detectors.png             |only
 secrlinear-1.1.4/secrlinear/vignettes/distfromspine.png         |only
 secrlinear-1.1.4/secrlinear/vignettes/linearmask.png            |only
 secrlinear-1.1.4/secrlinear/vignettes/masks.png                 |only
 secrlinear-1.1.4/secrlinear/vignettes/silverstreamCH.png        |only
 secrlinear-1.2.1/secrlinear/DESCRIPTION                         |   15 -
 secrlinear-1.2.1/secrlinear/MD5                                 |   62 ++--
 secrlinear-1.2.1/secrlinear/NAMESPACE                           |   75 +++--
 secrlinear-1.2.1/secrlinear/NEWS                                |   15 +
 secrlinear-1.2.1/secrlinear/R/asgraph.R                         |only
 secrlinear-1.2.1/secrlinear/R/clipmask.R                        |   26 +
 secrlinear-1.2.1/secrlinear/R/getLineID.R                       |only
 secrlinear-1.2.1/secrlinear/R/make.sldf.R                       |only
 secrlinear-1.2.1/secrlinear/R/networkdistance.R                 |  123 --------
 secrlinear-1.2.1/secrlinear/R/plot.linearmask.R                 |only
 secrlinear-1.2.1/secrlinear/R/plot.linearpopn.R                 |only
 secrlinear-1.2.1/secrlinear/R/rbind.linearmask.R                |only
 secrlinear-1.2.1/secrlinear/R/read.linearmask.R                 |   21 -
 secrlinear-1.2.1/secrlinear/R/sample.line.R                     |only
 secrlinear-1.2.1/secrlinear/R/showpath.R                        |only
 secrlinear-1.2.1/secrlinear/R/snapPointsToLinearMask.R          |only
 secrlinear-1.2.1/secrlinear/R/subset.linearmask.R               |only
 secrlinear-1.2.1/secrlinear/R/utility.R                         |  148 +---------
 secrlinear-1.2.1/secrlinear/build/partial.rdb                   |only
 secrlinear-1.2.1/secrlinear/build/vignette.rds                  |binary
 secrlinear-1.2.1/secrlinear/data/glymemask.RData                |binary
 secrlinear-1.2.1/secrlinear/inst/CITATION                       |   13 
 secrlinear-1.2.1/secrlinear/inst/doc/secrlinear-vignette.R      |   40 +-
 secrlinear-1.2.1/secrlinear/inst/doc/secrlinear-vignette.Rmd    |   90 ++----
 secrlinear-1.2.1/secrlinear/inst/doc/secrlinear-vignette.pdf    |binary
 secrlinear-1.2.1/secrlinear/man/clipmask.Rd                     |   16 -
 secrlinear-1.2.1/secrlinear/man/rbind.linearmask.Rd             |    4 
 secrlinear-1.2.1/secrlinear/man/secrlinear-package.Rd           |    9 
 secrlinear-1.2.1/secrlinear/man/utility.Rd                      |    5 
 secrlinear-1.2.1/secrlinear/tests                               |only
 secrlinear-1.2.1/secrlinear/vignettes/secrlinear-vignette.Rmd   |   90 ++----
 secrlinear-1.2.1/secrlinear/vignettes/secrlinear-vignette_cache |only
 41 files changed, 270 insertions(+), 482 deletions(-)

More information about secrlinear at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.