Sat, 20 May 2023

Package lrstat updated to version 0.1.13 with previous version 0.1.12 dated 2023-04-30

Title: Power and Sample Size Calculation for Non-Proportional Hazards
Description: Performs power and sample size calculation for non-proportional hazards model using the Fleming-Harrington family of weighted log-rank tests. The sequentially calculated log-rank test score statistics are assumed to have independent increments as characterized in Anastasios A. Tsiatis (1982) <doi:10.1080/01621459.1982.10477898>. The mean and variance of log-rank test score statistics are calculated based on Kaifeng Lu (2021) <doi:10.1002/pst.2069>. The boundary crossing probabilities are calculated using the recursive integration algorithm described in Christopher Jennison and Bruce W. Turnbull (2000, ISBN:0849303168).
Author: Kaifeng Lu
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>

Diff between lrstat versions 0.1.12 dated 2023-04-30 and 0.1.13 dated 2023-05-20

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Package IsoplotRgui updated to version 5.3 with previous version 5.2 dated 2023-03-01

Title: Web Interface to 'IsoplotR'
Description: Provides a graphical user interface to the 'IsoplotR' package for radiometric geochronology. The GUI runs in an internet browser and can either be used offline, or hosted on a server to provide online access to the 'IsoplotR' toolbox.
Author: Pieter Vermeesch [aut, cre], Tim Band [ctb]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>

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Package rempsyc updated to version 0.1.2 with previous version 0.1.1 dated 2023-02-06

Title: Convenience Functions for Psychology
Description: Make your workflow faster and easier. Easily customizable plots (via 'ggplot2'), nice APA tables (following the style of the *American Psychological Association*) exportable to Word (via 'flextable'), easily run statistical tests or check assumptions, and automatize various other tasks.
Author: Remi Theriault [aut, cre]
Maintainer: Remi Theriault <remi.theriault@mail.mcgill.ca>

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Package bspm updated to version 0.5.2 with previous version 0.5.1 dated 2023-03-16

Title: Bridge to System Package Manager
Description: Enables binary package installations on Linux distributions. Provides functions to manage packages via the distribution's package manager. Also provides transparent integration with R's install.packages() and a fallback mechanism. When installed as a system package, interacts with the system's package manager without requiring administrative privileges via an integrated D-Bus service; otherwise, uses sudo. Currently, the following backends are supported: DNF, APT, ALPM.
Author: Inaki Ucar [aut, cph, cre]
Maintainer: Inaki Ucar <iucar@fedoraproject.org>

Diff between bspm versions 0.5.1 dated 2023-03-16 and 0.5.2 dated 2023-05-20

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Package tidyfit updated to version 0.6.4 with previous version 0.6.3 dated 2023-03-15

Title: Regularized Linear Modeling with Tidy Data
Description: An extension to the 'R' tidy data environment for automated machine learning. The package allows fitting and cross validation of linear regression and classification algorithms on grouped data.
Author: Johann Pfitzinger [aut, cre]
Maintainer: Johann Pfitzinger <johann.pfitzinger@gmail.com>

Diff between tidyfit versions 0.6.3 dated 2023-03-15 and 0.6.4 dated 2023-05-20

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Package SecDim updated to version 3.2 with previous version 2.2 dated 2022-05-25

Title: The Second Dimension of Spatial Association
Description: Most of the current methods explore spatial association using observations at sample locations, which are defined as the first dimension of spatial association (FDA). The proposed concept of the second dimension of spatial association (SDA), as described in Yongze Song (2022) <doi:10.1016/j.jag.2022.102834>, aims to extract in-depth information about the geographical environment from locations outside sample locations for exploring spatial association.
Author: Yongze Song [aut, cre]
Maintainer: Yongze Song <yongze.song@outlook.com>

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Package samplingR updated to version 0.1.4 with previous version 0.1.3 dated 2023-04-17

Title: Sampling and Estimation Methods
Description: Functions to take samples of data, sample size estimation and getting useful estimators such as total, mean, proportion about its population using simple random, stratified and systematic sampling.
Author: Javier Estevez [aut, cre, cph]
Maintainer: Javier Estevez <javier.estase@gmail.com>

Diff between samplingR versions 0.1.3 dated 2023-04-17 and 0.1.4 dated 2023-05-20

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Package blockCV updated to version 3.1-2 with previous version 3.1-1 dated 2023-04-08

Title: Spatial and Environmental Blocking for K-Fold and LOO Cross-Validation
Description: Creating spatially or environmentally separated folds for cross-validation to provide a robust error estimation in spatially structured environments; Investigating and visualising the effective range of spatial autocorrelation in continuous raster covariates and point samples to find an initial realistic distance band to separate training and testing datasets spatially described in Valavi, R. et al. (2019) <doi:10.1111/2041-210X.13107>.
Author: Roozbeh Valavi [aut, cre] , Jane Elith [aut], Jose Lahoz-Monfort [aut], Ian Flint [aut], Gurutzeta Guillera-Arroita [aut]
Maintainer: Roozbeh Valavi <valavi.r@gmail.com>

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Package marginaleffects updated to version 0.12.0 with previous version 0.11.2 dated 2023-05-13

Title: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis Tests
Description: Compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 80 classes of statistical models in R. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference.
Author: Vincent Arel-Bundock [aut, cre, cph] , Marcio Augusto Diniz [ctb] , Noah Greifer [ctb] , Etienne Bacher [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>

Diff between marginaleffects versions 0.11.2 dated 2023-05-13 and 0.12.0 dated 2023-05-20

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Package JGR updated to version 1.9-2 with previous version 1.9-1 dated 2022-01-10

Title: Java GUI for R
Description: Java GUI for R - cross-platform, universal and unified Graphical User Interface for R. For full functionality on Windows and Mac OS X JGR requires a start application which depends on your OS.
Author: Markus Helbig <mhelbig81@googlemail.com>, Simon Urbanek, Ian Fellows
Maintainer: Markus Helbig <mhelbig81@googlemail.com>

Diff between JGR versions 1.9-1 dated 2022-01-10 and 1.9-2 dated 2023-05-20

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Package IsoplotR updated to version 5.3 with previous version 5.2 dated 2023-03-01

Title: Statistical Toolbox for Radiometric Geochronology
Description: Plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using 'York', 'Titterington' and 'Ludwig' approaches. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith') plots. Constructs total Pb-U, Pb-Pb, Th-Pb, K-Ca, Re-Os, Sm-Nd, Lu-Hf, Rb-Sr and 230Th-U isochrons as well as 230Th-U evolution plots.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>

Diff between IsoplotR versions 5.2 dated 2023-03-01 and 5.3 dated 2023-05-20

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New package ISS with initial version 0.1.3
Package: ISS
Title: Isotonic Subgroup Selection
Version: 0.1.3
Description: Methodology for subgroup selection in the context of isotonic regression with sub-Gaussian errors, including, in particular, options for the classification setting. See the documentation of ISS(). Details can be found in the paper by Müller, Reeve, Cannings and Samworth (2023) <arXiv:2305.04852>.
License: GPL (>= 3)
Encoding: UTF-8
Imports: parallel, stats, Rdpack (>= 0.7)
NeedsCompilation: no
Packaged: 2023-05-19 15:14:20 UTC; manuel
Author: Manuel M. Mueller [aut, cre], Henry W. J. Reeve [aut], Timothy I. Cannings [aut], Richard J. Samworth [aut]
Maintainer: Manuel M. Mueller <mm2559@cam.ac.uk>
Repository: CRAN
Date/Publication: 2023-05-20 08:30:03 UTC

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New package emBayes with initial version 0.1.0
Package: emBayes
Title: Robust Bayesian Variable Selection via Expectation-Maximization
Version: 0.1.0
Date: 2023-05-15
Maintainer: Yuwen Liu <yuwen@ksu.edu>
Description: Variable selection methods have been extensively developed for analyzing high-dimensional omics data within both the frequentist and Bayesian frameworks. This package implemented the spike-and-slab quantile LASSO which has been developed along the line of Bayesian hierarchical model but deeply rooted in the frequentist regularization methods by utilizing the Expectation–Maximization (EM) algorithm. Therefore, the proposed method borrows strength from both the frequentist and Bayesian frameworks while overcoming their respective limitations. The spike-and-slab quantile LASSO can handle data irregularity in terms of skewness and outliers in the disease trait, compared to its nonrobust alternative, the spike-and-slab LASSO, which has also been implemented in the package. The core module of this package is developed in 'C++'.
Depends: R (>= 4.2.0)
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports: Rcpp, glmnet
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2023-05-18 20:21:09 UTC; 26057
Author: Yuwen Liu [aut, cre], Cen Wu [aut]
Repository: CRAN
Date/Publication: 2023-05-20 08:10:02 UTC

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New package ConfZIC with initial version 1.0.0
Package: ConfZIC
Title: Confidence Envelopes for Model Selection Criteria Based on Minimum ZIC
Version: 1.0.0
Depends: R (>= 3.5.0)
Imports: cmna, stats, ltsa, MuMIn, mvtnorm, utils, tidytable, psych
Description: Narrow down the number of models to look at in model selection using the confidence envelopes based on the minimum ZIC (Generalized Information Criteria) values for regression and time series data. Functions involve the computation of multivariate normal-probabilities with covariance matrices based on minimum ZIC inverting the CDF of the minimum ZIC. It involves both the computation of singular and non-singular probabilities as described in Genz (1992) <https:doi.org/10.2307/1390838>.
License: GPL-2
Encoding: UTF-8
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
LazyData: true
Maintainer: I.M.L. Nadeesha Jayaweera <njayaweera@wpi.edu>
NeedsCompilation: no
Packaged: 2023-05-19 03:51:52 UTC; njayaweera
Author: I.M.L. Nadeesha Jayaweera [aut, cre] , A. Alex Trindade [ctb, aut]
Repository: CRAN
Date/Publication: 2023-05-20 08:20:02 UTC

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Package UComp updated to version 4.0.2 with previous version 4.0.1 dated 2023-05-15

Title: Automatic Unobserved Components and Other Time Series Models
Description: Comprehensive analysis and forecasting of univariate time series using automatic unobserved components models and algorithms. Harvey, AC (1989) <doi:10.1017/CBO9781107049994>. Pedregal DJ and Young PC (2002) <doi:10.1002/9780470996430>. Durbin J and Koopman SJ (2012) <doi:10.1093/acprof:oso/9780199641178.001.0001>. Hyndman RJ, Koehler AB, Ord JK, and Snyder RD (2008) <doi:10.1007/978-3-540-71918-2>.
Author: Diego J. Pedregal [aut, cre]
Maintainer: Diego J. Pedregal <Diego.Pedregal@uclm.es>

Diff between UComp versions 4.0.1 dated 2023-05-15 and 4.0.2 dated 2023-05-20

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New package rDEA with initial version 1.2-7
Package: rDEA
Version: 1.2-7
Title: Robust Data Envelopment Analysis (DEA) for R
Description: Data Envelopment Analysis for R, estimating robust DEA scores without and with environmental variables and doing returns-to-scale tests.
Imports: slam (>= 0.1-9), truncreg(>= 0.2-1), truncnorm(>= 1.0-7), maxLik
Suggests: testthat
SystemRequirements: GLPK (>= 4.52)
License: GPL-2 | GPL-3
URL: https://github.com/jaak-s/rDEA
LazyData: true
Packaged: 2023-05-19 21:06:28 UTC; jaak
Maintainer: Jaak Simm <jaak.simm@gmail.com>
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2023-05-20 07:30:05 UTC
Author: Jaak Simm [aut, cre], Galina Besstremyannaya [aut]

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New package randnet with initial version 0.7
Package: randnet
Title: Random Network Model Estimation, Selection and Parameter Tuning
Version: 0.7
Date: 2023-05-11
Description: Model selection and parameter tuning procedures for a class of random network models. The model selection can be done by a general cross-validation framework called ECV from Li et. al. (2016) <arXiv:1612.04717> . Several other model-based and task-specific methods are also included, such as NCV from Chen and Lei (2016) <arXiv:1411.1715>, likelihood ratio method from Wang and Bickel (2015) <arXiv:1502.02069>, spectral methods from Le and Levina (2015) <arXiv:1507.00827>. Many network analysis methods are also implemented, such as the regularized spectral clustering (Amini et. al. 2013 <doi:10.1214/13-AOS1138>) and its degree corrected version and graphon neighborhood smoothing (Zhang et. al. 2015 <arXiv:1509.08588>). It also includes the consensus clustering of Gao et. al. (2014) <arXiv:1410.5837>, the method of moments estimation of nomination SBM of Li et. al. (2020) <arxiv:2008.03652>, and the network mixing method of Li and Le (2021) & [...truncated...]
License: GPL (>= 2)
Depends: Matrix, entropy, AUC,sparseFLMM, mgcv
Imports: methods, stats, poweRlaw, RSpectra, irlba,pracma,nnls,data.table
NeedsCompilation: no
Packaged: 2023-05-20 02:05:10 UTC; tianxili
Author: Tianxi Li [aut, cre], Elizeveta Levina [aut], Ji Zhu [aut], Can M. Le [aut]
Maintainer: Tianxi Li <tianxili@virginia.edu>
Repository: CRAN
Date/Publication: 2023-05-20 07:30:02 UTC

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Package OpenImageR updated to version 1.2.9 with previous version 1.2.8 dated 2022-12-18

Title: An Image Processing Toolkit
Description: Incorporates functions for image preprocessing, filtering and image recognition. The package takes advantage of 'RcppArmadillo' to speed up computationally intensive functions. The histogram of oriented gradients descriptor is a modification of the 'findHOGFeatures' function of the 'SimpleCV' computer vision platform, the average_hash(), dhash() and phash() functions are based on the 'ImageHash' python library. The Gabor Feature Extraction functions are based on 'Matlab' code of the paper, "CloudID: Trustworthy cloud-based and cross-enterprise biometric identification" by M. Haghighat, S. Zonouz, M. Abdel-Mottaleb, Expert Systems with Applications, vol. 42, no. 21, pp. 7905-7916, 2015, <doi:10.1016/j.eswa.2015.06.025>. The 'SLIC' and 'SLICO' superpixel algorithms were explained in detail in (i) "SLIC Superpixels Compared to State-of-the-art Superpixel Methods", Radhakrishna Achanta, Appu Shaji, Kevin Smith, Aurelien Lucchi, Pascal Fua, and Sabine Suesstrunk, IEEE Transactions on [...truncated...]
Author: Lampros Mouselimis [aut, cre] , Sight Machine [cph] , Johannes Buchner [cph] , Mohammad Haghighat [cph] , Radhakrishna Achanta [cph] ), Oleh Onyshchak [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>

Diff between OpenImageR versions 1.2.8 dated 2022-12-18 and 1.2.9 dated 2023-05-20

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Package NTSS updated to version 0.1.2 with previous version 0.1.1 dated 2023-04-25

Title: Nonparametric Tests in Spatial Statistics
Description: Nonparametric test of independence between a pair of spatial objects (random fields, point processes) based on random shifts with torus or variance correction. See Mrkvička et al. (2021) <doi:10.1016/j.spasta.2020.100430>, Dvořák et al. (2022) <doi:10.1111/insr.12503>, Dvořák and Mrkvička (2022) <arxiv:2210.05424>.
Author: Jiri Dvorak [aut, cre] , Tomas Mrkvicka [ctb]
Maintainer: Jiri Dvorak <dvorak@karlin.mff.cuni.cz>

Diff between NTSS versions 0.1.1 dated 2023-04-25 and 0.1.2 dated 2023-05-20

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New package modelfree with initial version 1.2
Package: modelfree
Title: Model-Free Estimation of a Psychometric Function
Version: 1.2
Description: Local linear estimation of psychometric functions. Provides functions for nonparametric estimation of a psychometric function and for estimation of a derived threshold and slope, and their standard deviations and confidence intervals.
URL: www.R-project.org, https://personalpages.manchester.ac.uk/staff/d.h.foster/software-modelfree/latest/home.html
License: LGPL (>= 3)
Encoding: UTF-8
Imports: SparseM, PolynomF, methods
Depends: R (>= 2.10)
LazyData: true
NeedsCompilation: no
Packaged: 2023-05-19 17:24:41 UTC; kamil
Author: Ivan Marin-Franch [aut] , Kamila Zychaluk [aut, cre, cph], David H. Foster [aut]
Maintainer: Kamila Zychaluk <Kamila.Zychaluk@liverpool.ac.uk>
Repository: CRAN
Date/Publication: 2023-05-20 07:40:02 UTC

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Package scpi updated to version 2.2.4 with previous version 2.2.3 dated 2023-05-11

Title: Prediction Intervals for Synthetic Control Methods with Multiple Treated Units and Staggered Adoption
Description: Implementation of prediction and inference procedures for Synthetic Control methods using least square, lasso, ridge, or simplex-type constraints. Uncertainty is quantified with prediction intervals as developed in Cattaneo, Feng, and Titiunik (2021) <https://mdcattaneo.github.io/papers/Cattaneo-Feng-Titiunik_2021_JASA.pdf>.
Author: Matias Cattaneo [aut], Yingjie Feng [aut], Filippo Palomba [aut, cre], Rocio Titiunik [aut]
Maintainer: Filippo Palomba <fpalomba@princeton.edu>

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Package MARSS updated to version 3.11.8 with previous version 3.11.4 dated 2021-12-15

Title: Multivariate Autoregressive State-Space Modeling
Description: The MARSS package provides maximum-likelihood parameter estimation for constrained and unconstrained linear multivariate autoregressive state-space (MARSS) models, including partially deterministic models. MARSS models are a class of dynamic linear model (DLM) and vector autoregressive model (VAR) model. Fitting available via Expectation-Maximization (EM), BFGS (using optim), and 'TMB' (using the 'marssTMB' companion package). Functions are provided for parametric and innovations bootstrapping, Kalman filtering and smoothing, model selection criteria including bootstrap AICb, confidences intervals via the Hessian approximation or bootstrapping, and all conditional residual types. See the user guide for examples of dynamic factor analysis, dynamic linear models, outlier and shock detection, and multivariate AR-p models. Online workshops (lectures, eBook, and computer labs) at <https://atsa-es.github.io/>.
Author: Elizabeth Eli Holmes [aut, cre] , Eric J. Ward [aut] , Mark D. Scheuerell [aut] , Kellie Wills [aut]
Maintainer: Elizabeth Eli Holmes <eli.holmes@noaa.gov>

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2021-03-04 0.2.0
2018-09-16 0.1.0

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2022-01-27 1.0

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2023-01-16 1.0

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2023-04-04 0.6.1
2023-03-26 0.6.0
2022-08-16 0.5.0
2022-02-25 0.4.1
2022-02-14 0.4.0

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Package GenEst (with last version 1.4.8) was removed from CRAN

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2022-11-23 1.4.8
2022-11-15 1.4.7
2021-06-17 1.4.6
2021-02-13 1.4.5.1
2020-11-21 1.4.5
2020-06-08 1.4.4
2020-05-21 1.4.3
2020-03-14 1.4.2
2020-03-06 1.4.1
2020-02-05 1.4.0.2
2019-11-22 1.4.0.1
2019-11-07 1.4.0
2019-09-14 1.3.2
2019-08-22 1.3.1
2019-07-18 1.3.0
2019-04-12 1.2.4
2019-03-08 1.2.3
2019-02-06 1.2.2
2018-12-19 1.2.1
2018-12-06 1.2.0
2018-11-23 1.1.2
2018-11-20 1.1.0

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2017-12-12 0.10.0
2017-10-31 0.9.4
2017-10-02 0.9.3
2017-09-20 0.9.2
2017-08-20 0.9.1
2017-08-19 0.9.0
2017-07-19 0.8.0
2017-06-22 0.7.0
2017-06-06 0.6.0
2017-05-25 0.5.1
2017-05-23 0.5.0
2017-05-16 0.4.0
2017-05-05 0.3.1
2017-05-04 0.3.0
2017-04-16 0.2-0

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