Title: Framework for the Visualization of Distributional Regression
Models
Description: Functions for visualizing distributional regression models fitted using the 'gamlss', 'bamlss' or 'betareg' R package. The core of the package consists of a 'shiny' application, where the model results can be interactively explored and visualized.
Author: Stanislaus Stadlmann [cre, aut]
Maintainer: Stanislaus Stadlmann <stanislaus@stadlmann.cm>
Diff between distreg.vis versions 1.7.3 dated 2022-02-07 and 1.7.4 dated 2023-05-26
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/external_function.R | 2 +- R/plot_moments.R | 8 ++++++++ R/vis.R | 12 +++++++----- 5 files changed, 25 insertions(+), 15 deletions(-)
Title: Easily Create Production-Ready Rich Text Format (RTF) Table and
Figure
Description: Create production-ready Rich Text Format (RTF) table and figure
with flexible format.
Author: Yilong Zhang [aut, cre],
Siruo Wang [aut],
Simiao Ye [aut],
Fansen Kong [aut],
Brian Lang [aut],
Nan Xiao [ctb],
Madhusudhan Ginnaram [ctb],
Ruchitbhai Patel [ctb],
Huei-Ling Chen [ctb],
Peikun Wu [ctb],
Uday Preetham Palukuru [ctb],
Daniel Woodie [c [...truncated...]
Maintainer: Yilong Zhang <elong0527@gmail.com>
Diff between r2rtf versions 1.0.2 dated 2023-05-01 and 1.0.3 dated 2023-05-26
r2rtf-1.0.2/r2rtf/man/as_rtf_colheader.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_color.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_end.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_font.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_footnote.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_init.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_margin.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_new_page.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_page.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_pageby.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_paragraph.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_source.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_subline.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_table.Rd |only r2rtf-1.0.2/r2rtf/man/as_rtf_title.Rd |only r2rtf-1.0.2/r2rtf/man/border_type.Rd |only r2rtf-1.0.2/r2rtf/man/cell_size.Rd |only r2rtf-1.0.2/r2rtf/man/check_args.Rd |only r2rtf-1.0.2/r2rtf/man/color_table.Rd |only r2rtf-1.0.2/r2rtf/man/convert.Rd |only r2rtf-1.0.2/r2rtf/man/fig_format.Rd |only r2rtf-1.0.2/r2rtf/man/font_format.Rd |only r2rtf-1.0.2/r2rtf/man/font_type.Rd |only r2rtf-1.0.2/r2rtf/man/footnote_source_space.Rd |only r2rtf-1.0.2/r2rtf/man/inch_to_twip.Rd |only r2rtf-1.0.2/r2rtf/man/justification.Rd |only r2rtf-1.0.2/r2rtf/man/match_arg.Rd |only r2rtf-1.0.2/r2rtf/man/nrow_paragraph.Rd |only r2rtf-1.0.2/r2rtf/man/nrow_table.Rd |only r2rtf-1.0.2/r2rtf/man/obj_rtf_border.Rd |only r2rtf-1.0.2/r2rtf/man/obj_rtf_text.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_by_subline.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_convert_format.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_encode_figure.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_encode_list.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_encode_table.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_group_by_enhance.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_nline_matrix.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_nline_vector.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_nrow.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_pageby.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_paragraph.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_strwidth.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_subset.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_table_content.Rd |only r2rtf-1.0.2/r2rtf/man/rtf_text.Rd |only r2rtf-1.0.2/r2rtf/man/set_margin.Rd |only r2rtf-1.0.2/r2rtf/man/spacing.Rd |only r2rtf-1.0.2/r2rtf/man/update_border_first.Rd |only r2rtf-1.0.2/r2rtf/man/update_border_last.Rd |only r2rtf-1.0.2/r2rtf/man/update_cellx.Rd |only r2rtf-1.0.2/r2rtf/man/vertical_justification.Rd |only r2rtf-1.0.2/r2rtf/man/write_rtf_para.Rd |only r2rtf-1.0.3/r2rtf/DESCRIPTION | 6 r2rtf-1.0.3/r2rtf/MD5 | 113 ++-------- r2rtf-1.0.3/r2rtf/NEWS.md | 7 r2rtf-1.0.3/r2rtf/R/as_rtf_pageby.R | 28 +- r2rtf-1.0.3/r2rtf/R/as_rtf_paragraph.R | 1 r2rtf-1.0.3/r2rtf/R/as_rtf_table.R | 1 r2rtf-1.0.3/r2rtf/R/check_args.R | 1 r2rtf-1.0.3/r2rtf/R/content_create.R | 12 + r2rtf-1.0.3/r2rtf/R/conversion.R | 3 r2rtf-1.0.3/r2rtf/R/dictionary.R | 8 r2rtf-1.0.3/r2rtf/R/footnote_source_space.R | 1 r2rtf-1.0.3/r2rtf/R/match_arg.R | 1 r2rtf-1.0.3/r2rtf/R/obj_rtf_border.R | 2 r2rtf-1.0.3/r2rtf/R/obj_rtf_text.R | 2 r2rtf-1.0.3/r2rtf/R/rtf_by_subline.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_convert_format.R | 8 r2rtf-1.0.3/r2rtf/R/rtf_encode_figure.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_encode_list.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_encode_table.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_group_by_enhance.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_nrow.R | 10 r2rtf-1.0.3/r2rtf/R/rtf_pageby.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_paragraph.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_strwidth.R | 2 r2rtf-1.0.3/r2rtf/R/rtf_subset.R | 2 r2rtf-1.0.3/r2rtf/R/rtf_table_content.R | 1 r2rtf-1.0.3/r2rtf/R/rtf_text.R | 1 r2rtf-1.0.3/r2rtf/R/set_margin.R | 1 r2rtf-1.0.3/r2rtf/R/update_border.R | 4 r2rtf-1.0.3/r2rtf/R/write_rtf.R | 1 r2rtf-1.0.3/r2rtf/tests/testthat/test-independent-testing-rtf_encode_list.R | 17 + 84 files changed, 144 insertions(+), 96 deletions(-)
Title: Search Contributed R Packages, Sort by Package
Description: Search contributed R packages, sort by package.
Author: Spencer Graves [cre, aut, cph],
Sundar Dorai-Raj [aut], and Romain Francois [ctb]
Maintainer: Spencer Graves <spencer.graves@prodsyse.com>
Diff between sos versions 2.1-4 dated 2022-04-01 and 2.1-7 dated 2023-05-26
sos-2.1-4/sos/NEWS |only sos-2.1-7/sos/DESCRIPTION | 8 sos-2.1-7/sos/MD5 | 100 - sos-2.1-7/sos/NAMESPACE | 62 sos-2.1-7/sos/NEWS.md |only sos-2.1-7/sos/R/CRAN.R | 76 - sos-2.1-7/sos/R/Extract.findFn.R | 36 sos-2.1-7/sos/R/Ops.findFn.R | 68 - sos-2.1-7/sos/R/PackageSum2.R | 290 ++-- sos-2.1-7/sos/R/PackageSummary.R | 108 - sos-2.1-7/sos/R/back2ForwardSlash.R | 8 sos-2.1-7/sos/R/findFn.R | 542 ++++---- sos-2.1-7/sos/R/findFn2.R | 182 +- sos-2.1-7/sos/R/grepFn.R | 32 sos-2.1-7/sos/R/hits.R | 14 sos-2.1-7/sos/R/installPackages.R | 118 - sos-2.1-7/sos/R/intersectFindFn.R | 132 - sos-2.1-7/sos/R/packageSum.R | 122 - sos-2.1-7/sos/R/print.findFn.R | 550 ++++---- sos-2.1-7/sos/R/print.packageSum.R | 570 ++++---- sos-2.1-7/sos/R/sortFindFn.R | 108 - sos-2.1-7/sos/R/summary.findFn.R | 94 - sos-2.1-7/sos/R/unionFindFn.R | 130 - sos-2.1-7/sos/R/writeFindFn2xls.R | 334 ++--- sos-2.1-7/sos/README.md | 144 +- sos-2.1-7/sos/build/vignette.rds |binary sos-2.1-7/sos/inst/WORDLIST | 137 +- sos-2.1-7/sos/inst/brew/default/results.brew.html | 232 +-- sos-2.1-7/sos/inst/brew/iframe/results.brew.html | 190 +- sos-2.1-7/sos/inst/doc/sos.R | 393 ++--- sos-2.1-7/sos/inst/doc/sos.Rnw | 1124 ++++++++--------- sos-2.1-7/sos/inst/doc/sos.pdf |binary sos-2.1-7/sos/inst/js/sorttable.js | 984 +++++++------- sos-2.1-7/sos/inst/tests/example_back2ForwardSlash.txt | 4 sos-2.1-7/sos/man/CRAN.Rd | 214 +-- sos-2.1-7/sos/man/Extract.findFn.Rd | 125 - sos-2.1-7/sos/man/PackageSum2.Rd | 278 ++-- sos-2.1-7/sos/man/PackageSummary.Rd | 177 +- sos-2.1-7/sos/man/back2ForwardSlash.Rd | 160 +- sos-2.1-7/sos/man/findFn.Rd | 498 +++---- sos-2.1-7/sos/man/grepFn.Rd | 122 - sos-2.1-7/sos/man/hits.Rd | 104 - sos-2.1-7/sos/man/installPackages.Rd | 208 +-- sos-2.1-7/sos/man/packageSum.Rd | 266 ++-- sos-2.1-7/sos/man/print.findFn.Rd | 163 +- sos-2.1-7/sos/man/print.packageSum.Rd | 188 +- sos-2.1-7/sos/man/sortFindFn.Rd | 96 - sos-2.1-7/sos/man/summary.findFn.Rd | 198 +- sos-2.1-7/sos/man/unionFindFn.Rd | 228 +-- sos-2.1-7/sos/man/writeFindFn2xls.Rd | 137 +- sos-2.1-7/sos/vignettes/RJournal.sty | 466 +++---- sos-2.1-7/sos/vignettes/sos.Rnw | 1124 ++++++++--------- 52 files changed, 5838 insertions(+), 5806 deletions(-)
Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.35.0 dated 2023-03-22 and 1.36.0 dated 2023-05-26
DESCRIPTION | 6 MD5 | 43 +++--- NAMESPACE | 7 NEWS.md | 47 ++++++ R/RichSOCKcluster.R | 52 ++++++- R/as.cluster.R | 7 R/cgroups.R | 2 R/cloneNode.R |only R/isLocalhostNode.R | 5 R/isNodeAlive.R | 123 ++++++++++++++++- R/killNode.R | 117 +++++++++++++++- R/launchNodePSOCK.R |only R/makeClusterPSOCK.R | 8 - R/makeNodePSOCK.R | 325 +++++++++++----------------------------------- R/options.R | 16 ++ R/supportsMulticore.R | 43 ++++-- R/utils,cluster.R | 6 R/utils.R | 12 + README.md | 6 man/as.cluster.Rd | 3 man/cloneNode.Rd |only man/isNodeAlive.Rd | 5 man/makeClusterPSOCK.Rd | 24 +-- man/parallelly.options.Rd | 14 + 24 files changed, 542 insertions(+), 329 deletions(-)
Title: Tidy Standardized Mean Differences
Description: Tidy standardized mean differences ('SMDs'). 'tidysmd' uses
the 'smd' package to calculate standardized mean differences for
variables in a data frame, returning the results in a tidy format.
Author: Malcolm Barrett [aut, cre]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between tidysmd versions 0.1.1 dated 2022-08-05 and 0.2.0 dated 2023-05-26
DESCRIPTION | 20 ++-- MD5 | 37 +++++--- NAMESPACE | 6 + NEWS.md | 9 + R/geom_love.R |only R/matches.R |only R/tidysmd-package.R | 2 R/tidysmd.R | 120 +++++++++++++++++++------- R/utils.R | 12 ++ README.md | 142 +++++++++++++++++++++++++------ data/nhefs_weights.rda |binary inst/WORDLIST | 4 man/bind_matches.Rd |only man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |only man/figures/README-unnamed-chunk-7-1.png |only man/figures/README-unnamed-chunk-9-1.png |only man/geom_love.Rd |only man/tidy_smd.Rd | 29 +++++- man/tidysmd-package.Rd | 6 - tests/testthat/_snaps |only tests/testthat/test-geom_love.R |only tests/testthat/test-matches.R |only tests/testthat/test-tidysmd.R | 35 +++++-- 24 files changed, 318 insertions(+), 104 deletions(-)
Title: Spatial Statistical Modeling and Prediction
Description: Fit, summarize, and predict for a variety of spatial statistical models applied to point-referenced and areal (lattice) data. Parameters are estimated using various methods. Additional modeling features include anisotropy, non-spatial random effects, partition factors, big data approaches, and more. Model-fit statistics are used to summarize, visualize, and compare models. Predictions at unobserved locations are readily obtainable. For additional details, see Dumelle et al. (2023) <doi:10.1371/journal.pone.0282524>.
Author: Michael Dumelle [aut, cre] ,
Matt Higham [aut],
Jay M. Ver Hoef [aut]
Maintainer: Michael Dumelle <Dumelle.Michael@epa.gov>
Diff between spmodel versions 0.3.0 dated 2023-03-10 and 0.4.0 dated 2023-05-26
spmodel-0.3.0/spmodel/R/PseudoR2.R |only spmodel-0.3.0/spmodel/tests/testthat/test-AIC.R |only spmodel-0.3.0/spmodel/tests/testthat/test-PseudoR2.R |only spmodel-0.3.0/spmodel/tests/testthat/test-anova.R |only spmodel-0.3.0/spmodel/tests/testthat/test-augment.R |only spmodel-0.3.0/spmodel/tests/testthat/test-check_optim_method.R |only spmodel-0.3.0/spmodel/tests/testthat/test-coef.R |only spmodel-0.3.0/spmodel/tests/testthat/test-confint.R |only spmodel-0.3.0/spmodel/tests/testthat/test-cooks.distance.R |only spmodel-0.3.0/spmodel/tests/testthat/test-covmatrix.R |only spmodel-0.3.0/spmodel/tests/testthat/test-deviance.R |only spmodel-0.3.0/spmodel/tests/testthat/test-esv.R |only spmodel-0.3.0/spmodel/tests/testthat/test-fitted.R |only spmodel-0.3.0/spmodel/tests/testthat/test-formula.R |only spmodel-0.3.0/spmodel/tests/testthat/test-generics.R |only spmodel-0.3.0/spmodel/tests/testthat/test-glance.R |only spmodel-0.3.0/spmodel/tests/testthat/test-glances.R |only spmodel-0.3.0/spmodel/tests/testthat/test-hatvalues.R |only spmodel-0.3.0/spmodel/tests/testthat/test-hwInv.R |only spmodel-0.3.0/spmodel/tests/testthat/test-influence.R |only spmodel-0.3.0/spmodel/tests/testthat/test-labels.R |only spmodel-0.3.0/spmodel/tests/testthat/test-logLik.R |only spmodel-0.3.0/spmodel/tests/testthat/test-loocv.R |only spmodel-0.3.0/spmodel/tests/testthat/test-model.frame.R |only spmodel-0.3.0/spmodel/tests/testthat/test-model.matrix.R |only spmodel-0.3.0/spmodel/tests/testthat/test-plot.R |only spmodel-0.3.0/spmodel/tests/testthat/test-predict.R |only spmodel-0.3.0/spmodel/tests/testthat/test-print.R |only spmodel-0.3.0/spmodel/tests/testthat/test-randcov_initial.R |only spmodel-0.3.0/spmodel/tests/testthat/test-randcov_names.R |only spmodel-0.3.0/spmodel/tests/testthat/test-randcov_params.R |only spmodel-0.3.0/spmodel/tests/testthat/test-residuals.R |only spmodel-0.3.0/spmodel/tests/testthat/test-smwInv_rand.R |only spmodel-0.3.0/spmodel/tests/testthat/test-sp_objects.R |only spmodel-0.3.0/spmodel/tests/testthat/test-spautorRF.R |only spmodel-0.3.0/spmodel/tests/testthat/test-spcov_initial.R |only spmodel-0.3.0/spmodel/tests/testthat/test-spcov_matrix.R |only spmodel-0.3.0/spmodel/tests/testthat/test-spcov_params.R |only spmodel-0.3.0/spmodel/tests/testthat/test-spcov_vector.R |only spmodel-0.3.0/spmodel/tests/testthat/test-splmRF.R |only spmodel-0.3.0/spmodel/tests/testthat/test-sprnorm.R |only spmodel-0.3.0/spmodel/tests/testthat/test-summary.R |only spmodel-0.3.0/spmodel/tests/testthat/test-tidy.R |only spmodel-0.3.0/spmodel/tests/testthat/test-varcomp.R |only spmodel-0.3.0/spmodel/tests/testthat/test-vcov.R |only spmodel-0.4.0/spmodel/DESCRIPTION | 16 spmodel-0.4.0/spmodel/MD5 | 375 - spmodel-0.4.0/spmodel/NAMESPACE | 136 spmodel-0.4.0/spmodel/NEWS.md | 32 spmodel-0.4.0/spmodel/R/AIC.R | 450 +- spmodel-0.4.0/spmodel/R/AIC_glm.R |only spmodel-0.4.0/spmodel/R/anova.R | 9 spmodel-0.4.0/spmodel/R/anova_glm.R |only spmodel-0.4.0/spmodel/R/augment.R | 520 +- spmodel-0.4.0/spmodel/R/augment_glm.R |only spmodel-0.4.0/spmodel/R/coef.R | 8 spmodel-0.4.0/spmodel/R/coef_glm.R |only spmodel-0.4.0/spmodel/R/confint.R | 6 spmodel-0.4.0/spmodel/R/confint_glm.R |only spmodel-0.4.0/spmodel/R/cooks.distance.R | 6 spmodel-0.4.0/spmodel/R/cooks.distance_glm.R |only spmodel-0.4.0/spmodel/R/cov_betahat_adjust.R | 324 - spmodel-0.4.0/spmodel/R/cov_estimate_laploglik.R |only spmodel-0.4.0/spmodel/R/cov_initial_search.R | 2222 +++++----- spmodel-0.4.0/spmodel/R/cov_initial_search_glm.R |only spmodel-0.4.0/spmodel/R/cov_matrix.R | 120 spmodel-0.4.0/spmodel/R/covmatrix.R | 35 spmodel-0.4.0/spmodel/R/covmatrix_glm.R |only spmodel-0.4.0/spmodel/R/data.R | 265 - spmodel-0.4.0/spmodel/R/deviance.R | 9 spmodel-0.4.0/spmodel/R/deviance_glm.R |only spmodel-0.4.0/spmodel/R/dispersion_checks.R |only spmodel-0.4.0/spmodel/R/dispersion_initial.R |only spmodel-0.4.0/spmodel/R/dispersion_initial_NA.R |only spmodel-0.4.0/spmodel/R/dispersion_optim2orig.R |only spmodel-0.4.0/spmodel/R/dispersion_orig2optim.R |only spmodel-0.4.0/spmodel/R/dispersion_params.R |only spmodel-0.4.0/spmodel/R/esv.R | 12 spmodel-0.4.0/spmodel/R/fitted.R | 2 spmodel-0.4.0/spmodel/R/fitted_glm.R |only spmodel-0.4.0/spmodel/R/formula.R | 4 spmodel-0.4.0/spmodel/R/formula_glm.R |only spmodel-0.4.0/spmodel/R/get_cholprods_glm.R |only spmodel-0.4.0/spmodel/R/get_coefficients_glm.R |only spmodel-0.4.0/spmodel/R/get_cooks_distance.R | 24 spmodel-0.4.0/spmodel/R/get_cooks_distance_glm.R |only spmodel-0.4.0/spmodel/R/get_cov_matrix_list.R | 44 spmodel-0.4.0/spmodel/R/get_data_object.R | 79 spmodel-0.4.0/spmodel/R/get_data_object_glm.R |only spmodel-0.4.0/spmodel/R/get_deviance_glm.R |only spmodel-0.4.0/spmodel/R/get_eigenprods.R | 51 spmodel-0.4.0/spmodel/R/get_eigenprods_glm.R |only spmodel-0.4.0/spmodel/R/get_fitted.R | 8 spmodel-0.4.0/spmodel/R/get_fitted_glm.R |only spmodel-0.4.0/spmodel/R/get_hatvalues_glm.R |only spmodel-0.4.0/spmodel/R/get_initial_range.R | 158 spmodel-0.4.0/spmodel/R/get_loocv_glm.R |only spmodel-0.4.0/spmodel/R/get_minustwolaploglik.R |only spmodel-0.4.0/spmodel/R/get_model_stats.R | 3 spmodel-0.4.0/spmodel/R/get_model_stats_glm.R |only spmodel-0.4.0/spmodel/R/get_optim_par_glm.R |only spmodel-0.4.0/spmodel/R/get_randcov_list.R | 3 spmodel-0.4.0/spmodel/R/get_residuals.R | 60 spmodel-0.4.0/spmodel/R/get_residuals_glm.R |only spmodel-0.4.0/spmodel/R/get_vcov.R | 31 spmodel-0.4.0/spmodel/R/get_vcov_glm.R |only spmodel-0.4.0/spmodel/R/get_wts_varw.R |only spmodel-0.4.0/spmodel/R/glance.R | 6 spmodel-0.4.0/spmodel/R/glance_glm.R |only spmodel-0.4.0/spmodel/R/glances.R | 16 spmodel-0.4.0/spmodel/R/glances_glm.R |only spmodel-0.4.0/spmodel/R/gloglik_products.R | 289 - 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Title: Utility Functions for Exploratory Factor Analysis
Description: A number of utility function for exploratory factor analysis are included in this package. In particular, it computes standard errors for parameter estimates and factor correlations under a variety of conditions.
Author: Guangjian Zhang, Ge Jiang, Minami Hattori, Lauren Trichtinger
Maintainer: Guangjian Zhang <gzhang3@nd.edu>
Diff between EFAutilities versions 2.1.2 dated 2022-08-27 and 2.1.3 dated 2023-05-26
EFAutilities-2.1.2/EFAutilities/R/ModelTest20220708_c.R |only EFAutilities-2.1.2/EFAutilities/R/PolycorGamma20220818_c.R |only EFAutilities-2.1.2/EFAutilities/R/efa20220708_c.R |only EFAutilities-2.1.2/EFAutilities/R/ssem20220711_c.R |only EFAutilities-2.1.3/EFAutilities/DESCRIPTION | 6 EFAutilities-2.1.3/EFAutilities/MD5 | 24 EFAutilities-2.1.3/EFAutilities/NAMESPACE | 1 EFAutilities-2.1.3/EFAutilities/R/ModelTest20230308_c.R |only EFAutilities-2.1.3/EFAutilities/R/PolycorGamma20220819_c.R |only EFAutilities-2.1.3/EFAutilities/R/efa20230525_c.R |only EFAutilities-2.1.3/EFAutilities/R/ssem20230526_c.R |only EFAutilities-2.1.3/EFAutilities/build/vignette.rds |binary EFAutilities-2.1.3/EFAutilities/inst/doc/Examples.R | 267 - EFAutilities-2.1.3/EFAutilities/inst/doc/Examples.Rmd | 16 EFAutilities-2.1.3/EFAutilities/inst/doc/Examples.html | 2532 ++++++------- EFAutilities-2.1.3/EFAutilities/man/efa.Rd | 15 EFAutilities-2.1.3/EFAutilities/vignettes/Examples.Rmd | 16 17 files changed, 1367 insertions(+), 1510 deletions(-)
Title: A Dipping Sauce for Data Analysis and Visualizations
Description: Works as an "add-on" to packages like 'shiny', 'future', as well as
'rlang', and provides utility functions. Just like dipping sauce adding
flavors to potato chips or pita bread, 'dipsaus' for data analysis and
visualizations adds handy functions and enhancements to popular packages.
The goal is to provide simple solutions that are frequently asked for
online, such as how to synchronize 'shiny' inputs without freezing the app,
or how to get memory size on 'Linux' or 'MacOS' system. The enhancements
roughly fall into these four categories: 1. 'shiny' input widgets; 2.
high-performance computing using the 'future' package; 3.
modify R calls and convert among numbers, strings, and other objects. 4.
utility functions to get system information such like CPU chip-set, memory
limit, etc.
Author: Zhengjia Wang [aut, cre],
John Magnotti [ctb] ,
Xiang Zhang [ctb]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between dipsaus versions 0.2.6 dated 2023-01-21 and 0.2.7 dated 2023-05-26
dipsaus-0.2.6/dipsaus/inst/include/TinyParallel/RMatrix.h |only dipsaus-0.2.6/dipsaus/inst/shiny-addons/dipsaus/junk.js |only dipsaus-0.2.7/dipsaus/DESCRIPTION | 10 dipsaus-0.2.7/dipsaus/MD5 | 39 - dipsaus-0.2.7/dipsaus/NEWS.md | 20 dipsaus-0.2.7/dipsaus/R/credentials.R | 10 dipsaus-0.2.7/dipsaus/R/lock.R | 10 dipsaus-0.2.7/dipsaus/R/parallels-future.R | 5 dipsaus-0.2.7/dipsaus/R/utils-filesystem.R | 23 dipsaus-0.2.7/dipsaus/R/utils-rstudio.R | 27 - dipsaus-0.2.7/dipsaus/build/vignette.rds |binary dipsaus-0.2.7/dipsaus/inst/doc/r_expr_addons.html | 256 +++++------ dipsaus-0.2.7/dipsaus/inst/doc/shiny_customized_widgets.html | 60 +- dipsaus-0.2.7/dipsaus/inst/doc/utility_functions.html | 112 ++-- dipsaus-0.2.7/dipsaus/inst/include/TinyParallel.h | 1 dipsaus-0.2.7/dipsaus/src/Makevars | 1 dipsaus-0.2.7/dipsaus/src/Makevars.win | 1 dipsaus-0.2.7/dipsaus/src/rcpp_arrayShift.cpp | 1 dipsaus-0.2.7/dipsaus/src/rcpp_baselineArray.cpp | 1 dipsaus-0.2.7/dipsaus/src/utils.cpp | 1 dipsaus-0.2.7/dipsaus/tests/testthat.R | 1 dipsaus-0.2.7/dipsaus/tests/testthat/test.zzz.R |only 22 files changed, 322 insertions(+), 257 deletions(-)
Title: Quasi Variances for Factor Effects in Statistical Models
Description: Functions to compute quasi variances and associated measures of approximation error.
Author: David Firth
Maintainer: David Firth <d.firth@warwick.ac.uk>
Diff between qvcalc versions 1.0.2 dated 2020-02-15 and 1.0.3 dated 2023-05-26
DESCRIPTION | 10 +++++----- MD5 | 11 ++++++----- NEWS.md | 7 ++++++- build |only man/plot.qv.Rd | 6 +++--- man/qvcalc.Rd | 6 +++--- man/worstErrors.Rd | 2 +- 7 files changed, 24 insertions(+), 18 deletions(-)
Title: Precipitation R Recipes
Description: An open-access tool/framework to download, validate, visualize,
and analyze multi-source precipitation data across various spatio-temporal
scales. Ultimately providing the hydrology science community with the tools
for consistent and reproducible analysis regarding precipitation.
Author: Mijael Rodrigo Vargas Godoy [aut, cre]
,
Yannis Markonis [aut, ths]
Maintainer: Mijael Rodrigo Vargas Godoy <mirovago@gmail.com>
Diff between pRecipe versions 2.3.0 dated 2023-04-08 and 2.4.0 dated 2023-05-26
pRecipe-2.3.0/pRecipe/R/era5_ce_ts.R |only pRecipe-2.3.0/pRecipe/R/era5_cze_ts.R |only pRecipe-2.3.0/pRecipe/R/era5_global_ts.R |only pRecipe-2.3.0/pRecipe/data/era5_ce_ts.rda |only pRecipe-2.3.0/pRecipe/data/era5_cze_ts.rda |only pRecipe-2.3.0/pRecipe/data/era5_global_ts.rda |only pRecipe-2.3.0/pRecipe/man/era5_ce_ts.Rd |only pRecipe-2.3.0/pRecipe/man/era5_cze_ts.Rd |only pRecipe-2.3.0/pRecipe/man/era5_global_ts.Rd |only pRecipe-2.4.0/pRecipe/DESCRIPTION | 9 pRecipe-2.4.0/pRecipe/MD5 | 70 pRecipe-2.4.0/pRecipe/NAMESPACE | 4 pRecipe-2.4.0/pRecipe/NEWS.md | 8 pRecipe-2.4.0/pRecipe/R/csi.R |only pRecipe-2.4.0/pRecipe/R/download_era20c.R | 2 pRecipe-2.4.0/pRecipe/R/download_fldas.R | 2 pRecipe-2.4.0/pRecipe/R/download_udel.R | 2 pRecipe-2.4.0/pRecipe/R/far.R |only pRecipe-2.4.0/pRecipe/R/globals.R | 3 pRecipe-2.4.0/pRecipe/R/gpm_cz_ts.R |only pRecipe-2.4.0/pRecipe/R/gpm_global_ts.R |only pRecipe-2.4.0/pRecipe/R/gpm_subset_ts.R |only pRecipe-2.4.0/pRecipe/R/nse.R |only pRecipe-2.4.0/pRecipe/R/plot_box.R | 2 pRecipe-2.4.0/pRecipe/R/pod.R |only pRecipe-2.4.0/pRecipe/R/subset_spacetime.R | 12 pRecipe-2.4.0/pRecipe/R/subset_time.R | 14 pRecipe-2.4.0/pRecipe/build/vignette.rds |binary pRecipe-2.4.0/pRecipe/data/gpm_cz_ts.rda |only pRecipe-2.4.0/pRecipe/data/gpm_global_ts.rda |only pRecipe-2.4.0/pRecipe/data/gpm_subset_ts.rda |only pRecipe-2.4.0/pRecipe/inst/CITATION | 11 pRecipe-2.4.0/pRecipe/inst/WORDLIST | 5 pRecipe-2.4.0/pRecipe/inst/doc/pRecipe.R | 168 +- pRecipe-2.4.0/pRecipe/inst/doc/pRecipe.Rmd | 389 ++--- pRecipe-2.4.0/pRecipe/inst/doc/pRecipe.html | 1586 +++++++++++++++------- pRecipe-2.4.0/pRecipe/man/csi.Rd |only pRecipe-2.4.0/pRecipe/man/far.Rd |only pRecipe-2.4.0/pRecipe/man/gpm_cz_ts.Rd |only pRecipe-2.4.0/pRecipe/man/gpm_global_ts.Rd |only pRecipe-2.4.0/pRecipe/man/gpm_subset_ts.Rd |only pRecipe-2.4.0/pRecipe/man/nse.Rd |only pRecipe-2.4.0/pRecipe/man/plot_box.Rd | 2 pRecipe-2.4.0/pRecipe/man/pod.Rd |only pRecipe-2.4.0/pRecipe/vignettes/pRecipe.Rmd | 389 ++--- pRecipe-2.4.0/pRecipe/vignettes/plots/map.png |binary pRecipe-2.4.0/pRecipe/vignettes/plots/map_ceu.png |binary pRecipe-2.4.0/pRecipe/vignettes/plots/map_cze.png |binary pRecipe-2.4.0/pRecipe/vignettes/plots/summary.png |binary 49 files changed, 1748 insertions(+), 930 deletions(-)
Title: 'NoSQL' Database Connector
Description: Simplified document database access and manipulation,
providing a common API across supported 'NoSQL' databases
'Elasticsearch', 'CouchDB', 'MongoDB' as well as
'SQLite/JSON1', 'PostgreSQL', and 'DuckDB'.
Author: Ralf Herold [aut, cre] ,
Scott Chamberlain [aut] ,
Rich FitzJohn [aut],
Jeroen Ooms [aut]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between nodbi versions 0.9.4 dated 2023-05-14 and 0.9.5 dated 2023-05-26
DESCRIPTION | 8 +-- MD5 | 14 +++--- NEWS.md | 6 ++ R/create.R | 90 ++++++++++++++++++++++++-------------------- R/query.R | 20 ++++++--- R/update.R | 34 +++++++++------- tests/testthat/core-nodbi.R | 22 +++++----- tests/testthat/helper.R | 16 ++++--- 8 files changed, 122 insertions(+), 88 deletions(-)
Title: E-Value in the Omics Data Association Studies
Description: In the omics data association studies, it is common to conduct the p-value corrections to control the false significance. Beyond the P-value corrections, E-value is recently studied to facilitate multiple testing correction based on V. Vovk and R. Wang (2021) <doi:10.1214/20-AOS2020>. This package provides E-value calculation for DNA methylation data and RNA-seq data. Currently, five data formats are supported: DNA methylation levels using DMR detection tools (BiSeq, DMRfinder, MethylKit, Metilene and other DNA methylation tools) and RNA-seq data. The relevant references are listed below: Katja Hebestreit and Hans-Ulrich Klein (2022) <doi:10.18129/B9.bioc.BiSeq>; Altuna Akalin et.al (2012) <doi:10.18129/B9.bioc.methylKit>.
Author: Yifan Yang [aut, cre, cph],
Xiaoqing Pan [aut],
Haoyuan Liu [aut]
Maintainer: Yifan Yang <yfyang.86@hotmail.com>
Diff between metevalue versions 0.2.2 dated 2023-05-18 and 0.2.4 dated 2023-05-26
metevalue-0.2.2/metevalue/man/varevalue.signle_general.Rd |only metevalue-0.2.4/metevalue/DESCRIPTION | 10 metevalue-0.2.4/metevalue/MD5 | 54 - metevalue-0.2.4/metevalue/NAMESPACE | 2 metevalue-0.2.4/metevalue/R/evalue_data_DMRfinder.R | 23 metevalue-0.2.4/metevalue/R/evalue_data_biseq.R | 39 metevalue-0.2.4/metevalue/R/evalue_data_chk.R | 101 +- metevalue-0.2.4/metevalue/R/evalue_data_methylKit.R | 32 metevalue-0.2.4/metevalue/R/evalue_data_metilene.R | 24 metevalue-0.2.4/metevalue/R/evalue_main.R | 175 ++-- metevalue-0.2.4/metevalue/build/partial.rdb |binary metevalue-0.2.4/metevalue/data/demo_metilene_input.rda |binary metevalue-0.2.4/metevalue/inst/doc/metevalue.R | 171 ---- metevalue-0.2.4/metevalue/inst/doc/metevalue.Rmd | 215 +++-- metevalue-0.2.4/metevalue/inst/doc/metevalue.html | 598 ++++++++++---- metevalue-0.2.4/metevalue/man/demo_biseq_DMR.Rd | 24 metevalue-0.2.4/metevalue/man/demo_metilene_input.Rd | 3 metevalue-0.2.4/metevalue/man/metevalue.DMRfinder.Rd | 23 metevalue-0.2.4/metevalue/man/metevalue.DMRfinder.chk.Rd | 26 metevalue-0.2.4/metevalue/man/metevalue.RNA_general.Rd | 32 metevalue-0.2.4/metevalue/man/metevalue.biseq.Rd | 36 metevalue-0.2.4/metevalue/man/metevalue.biseq.chk.Rd | 24 metevalue-0.2.4/metevalue/man/metevalue.methylKit.Rd | 32 metevalue-0.2.4/metevalue/man/metevalue.methylKit.chk.Rd | 21 metevalue-0.2.4/metevalue/man/metevalue.metilene.Rd | 25 metevalue-0.2.4/metevalue/man/metevalue.metilene.chk.Rd | 24 metevalue-0.2.4/metevalue/man/varevalue.metilene.Rd | 32 metevalue-0.2.4/metevalue/man/varevalue.single_general.Rd |only metevalue-0.2.4/metevalue/vignettes/metevalue.Rmd | 215 +++-- 29 files changed, 1190 insertions(+), 771 deletions(-)
Title: B-Spline Interpolation and Regression
Description: Build and use B-splines for interpolation and regression.
In case of regression, equality constraints as well as monotonicity
and/or positivity of B-spline weights can be imposed. Moreover,
knot positions (not only spline weights) can be part of
optimized parameters too. For this end, 'bspline' is able to calculate
Jacobian of basis vectors as function of knot positions. User is provided with
functions calculating spline values at arbitrary points. These
functions can be differentiated and integrated to obtain B-splines calculating
derivatives/integrals at any point. B-splines of this package can
simultaneously operate on a series of curves sharing the same set of
knots. 'bspline' is written with concern about computing
performance that's why the basis and Jacobian calculation is implemented in C++.
The rest is implemented in R but without notable impact on computing speed.
Author: Serguei Sokol <sokol@insa-toulouse.fr>
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between bspline versions 2.1 dated 2022-09-28 and 2.2 dated 2023-05-26
DESCRIPTION | 8 +-- MD5 | 24 +++++---- NAMESPACE | 2 NEWS.md | 14 +++-- R/RcppExports.R | 17 ++++++ R/bspline.R | 59 +++++++++++++++++++--- cleanup | 2 inst/unitTests/runit.bspline.R | 10 +++ man/bcurve.Rd |only man/diffn.Rd | 2 man/parr.Rd |only src/RcppExports.cpp | 27 ++++++++++ src/bspline.cpp | 106 +++++++++++++++++++++++++++++++++++++++++ tests/RUnit.R | 4 + 14 files changed, 241 insertions(+), 34 deletions(-)
Title: Functions for Diffusing Function Documentations into 'Roxygen'
Comments
Description: Efficient diffusing of content across function documentations. Sections, parameters or dot parameters are extracted from function documentations and turned into valid Rd character strings, which are ready to diffuse into the 'roxygen' comments of another function by inserting inline code.
Author: Xiurui Zhu [aut, cre]
Maintainer: Xiurui Zhu <zxr6@163.com>
Diff between roclang versions 0.2.1 dated 2023-01-21 and 0.2.2 dated 2023-05-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 9 +++++++++ README.md | 35 ++++++++++++++++++++--------------- 4 files changed, 35 insertions(+), 21 deletions(-)
Title: Tools for 2D and 3D Plots of Single and Multi-Objective
Linear/Integer Programming Models
Description: Make 2D and 3D plots of linear programming (LP),
integer linear programming (ILP), or mixed integer linear programming (MILP) models
with up to three objectives. Plots of both the solution and criterion space are possible.
For instance the non-dominated (Pareto) set for bi-objective LP/ILP/MILP programming models
(see vignettes for an overview). The package also contains an function for checking if a point
is inside the convex hull.
Author: Lars Relund Nielsen [aut, cre]
Maintainer: Lars Relund Nielsen <lars@relund.dk>
Diff between gMOIP versions 1.4.9 dated 2023-02-15 and 1.5.0 dated 2023-05-26
DESCRIPTION | 6 MD5 | 21 NEWS.md | 5 R/plot.R | 61 build/vignette.rds |binary inst/doc/bi-objective_2x.html | 32 inst/doc/bi-objective_3x_ex1.html | 7728 -------------------------------------- inst/doc/intro.html | 16 inst/doc/polytope_2d.html | 4 inst/doc/tri-objective.html | 7704 ------------------------------------- man/plotLines2D.Rd |only man/plotPolytope.Rd | 2 12 files changed, 141 insertions(+), 15438 deletions(-)
Title: Wearable Accelerometer Data File Readers
Description: Reads data collected from wearable acceleratometers as used in sleep and physical activity research. Currently supports file formats: binary data from 'GENEActiv' <https://activinsights.com/>, binary data from GENEA devices (not for sale), and .cwa-format and .wav-format data from 'Axivity' <https://axivity.com>. Primarily designed to complement R package GGIR <https://CRAN.R-project.org/package=GGIR>.
Author: Vincent T van Hees [aut, cre],
Patrick Bos [aut] ,
Jing Hua Zhao [ctb],
Evgeny Mirkes [ctb],
Dan Jackson [ctb],
Jairo H Migueles [ctb],
Medical Research Council UK [cph, fnd],
Accelting [cph, fnd]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIRread versions 0.2.7 dated 2023-05-17 and 0.2.8 dated 2023-05-26
DESCRIPTION | 8 +++--- MD5 | 10 +++---- R/readAxivity.R | 63 ++++++++++++++++++++++++++++++++++++++---------- inst/NEWS.Rd | 7 +++++ man/GGIRread-package.Rd | 4 +-- src/resample.cpp | 6 ++++ 6 files changed, 75 insertions(+), 23 deletions(-)
Title: Create Cartograms with R
Description: Construct continuous and non-contiguous area cartograms.
Author: Sebastian Jeworutzki [aut, cre]
,
Timothee Giraud [ctb],
Nicolas Lambert [ctb],
Roger Bivand [cph],
Edzer Pebesma [cph],
Jakub Nowosad [ctb]
Maintainer: Sebastian Jeworutzki <sebastian.jeworutzki@ruhr-uni-bochum.de>
Diff between cartogram versions 0.2.2 dated 2020-08-26 and 0.3.0 dated 2023-05-26
DESCRIPTION | 11 +-- MD5 | 26 ++++---- NEWS | 1 R/cartogram_cont.R | 60 +++++++------------ R/cartogram_dorling.R | 48 +++++---------- R/cartogram_ncont.R | 38 ++++-------- README.md | 119 +++++++++++---------------------------- man/cartogram.Rd | 1 man/cartogram_cont.Rd | 46 +++++---------- man/cartogram_dorling.Rd | 35 +++-------- man/cartogram_ncont.Rd | 33 +++------- man/figures/README-cont-1.png |binary man/figures/README-dorling-1.png |binary man/figures/README-ncont-1.png |binary 14 files changed, 151 insertions(+), 267 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see list of supported models using the
function 'insight::supported_models()'), this package implements
features like bootstrapping or simulating of parameters and models,
feature reduction (feature extraction and variable selection) as well
as functions to describe data and variable characteristics (e.g.
skewness, kurtosis, smoothness or distribution).
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Soeren Hoejsgaard [aut],
Brenton M. Wiernik [aut] ,
Zen J. Lau [ctb],
Vincent Arel-Bundock [ctb] ,
Jeffrey Girard [ctb] ,
Christina Maimone [re [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between parameters versions 0.21.0 dated 2023-04-19 and 0.21.1 dated 2023-05-26
DESCRIPTION | 22 ++--- MD5 | 27 +++--- NAMESPACE | 8 ++ NEWS.md | 16 ++++ R/1_model_parameters.R | 16 +++- R/2_ci.R | 4 - R/bootstrap_model.R | 53 +++++++++++++ R/format.R | 8 ++ R/methods_nestedLogit.R |only R/parameters_type.R | 25 +++++- R/utils_cleaners.R | 9 +- inst/WORDLIST | 1 tests/testthat/test-mipo.R | 8 +- tests/testthat/test-nestedLogit.R |only tests/testthat/test-ordered.R |only tests/testthat/test-robust.R | 147 ++++++++++++++------------------------ 16 files changed, 219 insertions(+), 125 deletions(-)
Title: Hierarchical and Geographically Weighted Regression
Description: This model divides coefficients into three types,
i.e., local fixed effects, global fixed effects, and random effects (Hu et al., 2022)<doi:10.1177/23998083211063885>.
If data have spatial hierarchical structures (especially are overlapping on some locations),
it is worth trying this model to reach better fitness.
Author: Yigong Hu, Richard Harris, Richard Timmerman
Maintainer: Yigong Hu <yigong.hu@bristol.ac.uk>
Diff between hgwrr versions 0.2-3 dated 2022-06-15 and 0.3-0 dated 2023-05-26
DESCRIPTION | 11 + MD5 | 20 +-- R/hgwr.R | 86 +++++++++----- build/partial.rdb |binary data/wuhan.hp.rda |binary man/hgwr.Rd | 10 + src/Makevars.in | 3 src/Makevars.win | 3 src/RcppExports.cpp | 60 +++++++--- src/hlmgwr.cpp | 306 +++++++++++++++++++++++++++++++++++++++------------- src/hlmgwr.h | 16 +- 11 files changed, 363 insertions(+), 152 deletions(-)
Title: Retrieve and Analyze Clinical Trials in Public Registers
Description: A system for querying, retrieving and analyzing
protocol- and results-related information on clinical trials from
four public registers, the 'European Union Clinical Trials Register'
('EUCTR', <https://www.clinicaltrialsregister.eu/>),
'ClinicalTrials.gov' ('CTGOV', <https://clinicaltrials.gov/>),
the 'ISRCTN' (<http://www.isrctn.com/>) and the
'European Union Clinical Trials Information System'
('CTIS', <https://euclinicaltrials.eu/>).
Trial information is downloaded, converted and stored in a database
('PostgreSQL', 'SQLite', 'DuckDB' or 'MongoDB'; via package 'nodbi').
Documents in registers associated with trials can also be downloaded.
Functions can identify deduplicated records,
easily find and extract variables (fields) of interest even
from complex nesting as used by the registers, and
to update queries.
The package can be used for meta-analysis and trend-analysis of
the design and conduct as well as of the results of clinical trials.
Author: Ralf Herold [aut, cre]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between ctrdata versions 1.13.1 dated 2023-05-07 and 1.13.2 dated 2023-05-26
DESCRIPTION | 10 ++--- MD5 | 32 ++++++++-------- NAMESPACE | 5 -- NEWS.md | 4 ++ R/main.R | 6 +-- R/utils.R | 54 +++++++++++---------------- inst/doc/ctrdata_install.pdf |binary inst/doc/ctrdata_retrieve.pdf |binary inst/doc/ctrdata_summarise.pdf |binary inst/tinytest/setup_ctrdata.R | 4 +- inst/tinytest/test_ctrdata_other_functions.R | 2 - man/ctrGetQueryUrl.Rd | 2 - man/dbGetFieldsIntoDf.Rd | 2 - man/dbQueryHistory.Rd | 2 - man/dfListExtractKey.Rd | 2 - man/dfName2Value.Rd | 2 - man/dfTrials2Long.Rd | 2 - 17 files changed, 60 insertions(+), 69 deletions(-)
Title: Download Map Data from GISCO API - Eurostat
Description: Tools to download data from the GISCO (Geographic Information
System of the Commission) Eurostat database
<https://ec.europa.eu/eurostat/web/gisco>. Global and European map
data available. This package is in no way officially related to or
endorsed by Eurostat.
Author: Diego Hernangomez [aut, cre, cph]
,
EuroGeographics [cph] ,
Vincent Arel-Bundock [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between giscoR versions 0.3.3 dated 2023-02-16 and 0.3.4 dated 2023-05-26
DESCRIPTION | 7 MD5 | 130 +- NAMESPACE | 46 - NEWS.md | 4 R/data.R | 448 +++++----- R/giscoR-package.R | 12 R/gisco_bulk_download.R | 312 +++---- R/gisco_cache.R | 434 ++++----- R/gisco_check_access.R | 100 +- R/gisco_get_airports.R | 294 +++--- R/gisco_get_coastallines.R | 190 ++-- R/gisco_get_countries.R | 426 ++++----- R/gisco_get_grid.R | 426 ++++----- R/gisco_get_healthcare.R | 180 ++-- R/gisco_get_lau.R | 624 +++++++------- R/gisco_get_nuts.R | 342 +++---- R/gisco_get_units.R | 740 ++++++++-------- R/gisco_get_urban_audit.R | 206 ++-- R/utils_downloads.R | 960 ++++++++++----------- R/utils_names.R | 216 ++-- README.md | 742 ++++++++-------- build/vignette.rds |binary data/gisco_coastallines.rda |binary data/gisco_countries.rda |binary data/gisco_countrycode.rda |binary data/gisco_db.rda |binary data/gisco_nuts.rda |binary data/tgs00026.rda |binary inst/CITATION | 44 inst/COPYRIGHTS | 246 ++--- inst/WORDLIST | 157 +-- inst/doc/giscoR.Rmd | 593 ++++++------- inst/doc/giscoR.html | 1243 ++++++++++++++-------------- man/giscoR-package.Rd | 64 - man/gisco_attributions.Rd | 144 +-- man/gisco_bulk_download.Rd | 216 ++-- man/gisco_check_access.Rd | 40 man/gisco_clear_cache.Rd | 118 +- man/gisco_coastallines.Rd | 108 +- man/gisco_countries.Rd | 98 +- man/gisco_countrycode.Rd | 104 +- man/gisco_db.Rd | 48 - man/gisco_get.Rd | 294 +++--- man/gisco_get_airports.Rd | 260 ++--- man/gisco_get_coastallines.Rd | 204 ++-- man/gisco_get_grid.Rd | 328 +++---- man/gisco_get_healthcare.Rd | 200 ++-- man/gisco_get_lau.Rd | 272 +++--- man/gisco_get_nuts.Rd | 306 +++--- man/gisco_get_postalcodes.Rd | 210 ++-- man/gisco_get_units.Rd | 332 +++---- man/gisco_get_urban_audit.Rd | 222 ++--- man/gisco_nuts.Rd | 104 +- man/gisco_set_cache_dir.Rd | 128 +- man/tgs00026.Rd | 78 - tests/testthat.R | 16 tests/testthat/_snaps/gisco_attributions.md | 64 - tests/testthat/test-gisco_attributions.R | 52 - tests/testthat/test-gisco_cache.R | 80 - tests/testthat/test-gisco_get_countries.R | 160 +-- tests/testthat/test-gisco_get_grid.R | 15 tests/testthat/test-gisco_get_healthcare.R | 18 vignettes/africa-1.png |binary vignettes/country-1.png |binary vignettes/giscoR-1.png |binary vignettes/giscoR.Rmd | 593 ++++++------- 66 files changed, 7022 insertions(+), 6976 deletions(-)
Title: Standardize Plant Names According to World Flora Online
Taxonomic Backbone
Description: World Flora Online is an online flora of all known plants, available from <http://www.worldfloraonline.org/>. Methods are provided of matching a list of plant names (scientific names, taxonomic names, botanical names) against a static copy of the World Flora Online Taxonomic Backbone data that can be downloaded from the World Flora Online website. The World Flora Online Taxonomic Backbone is an updated version of The Plant List (<http://www.theplantlist.org/>), a working list of plant names that has become static since 2013.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between WorldFlora versions 1.13 dated 2023-03-27 and 1.13-2 dated 2023-05-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/WFO.download.R | 3 ++- inst/ChangeLog | 8 ++++++++ man/WFO.remember.Rd | 6 ++---- 5 files changed, 20 insertions(+), 13 deletions(-)
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 0.6.1 dated 2023-04-21 and 0.7 dated 2023-05-26
openxlsx2-0.6.1/openxlsx2/man/convert_datetime.Rd |only openxlsx2-0.6.1/openxlsx2/man/numfmt_is_date.Rd |only openxlsx2-0.6.1/openxlsx2/man/numfmt_is_posix.Rd |only openxlsx2-0.6.1/openxlsx2/man/style_is_date.Rd |only openxlsx2-0.6.1/openxlsx2/man/style_is_posix.Rd |only openxlsx2-0.6.1/openxlsx2/tests/testthat/test-table_overlaps.R |only openxlsx2-0.6.1/openxlsx2/tests/testthat/test-validate_table_name.R |only openxlsx2-0.7/openxlsx2/DESCRIPTION | 6 openxlsx2-0.7/openxlsx2/MD5 | 147 +-- openxlsx2-0.7/openxlsx2/NAMESPACE | 6 openxlsx2-0.7/openxlsx2/NEWS.md | 30 openxlsx2-0.7/openxlsx2/R/RcppExports.R | 4 openxlsx2-0.7/openxlsx2/R/baseXML.R | 79 + openxlsx2-0.7/openxlsx2/R/class-chart-sheet.R | 56 - openxlsx2-0.7/openxlsx2/R/class-color.R | 12 openxlsx2-0.7/openxlsx2/R/class-style_mgr.R | 76 + openxlsx2-0.7/openxlsx2/R/class-workbook-wrappers.R | 178 +++ openxlsx2-0.7/openxlsx2/R/class-workbook.R | 467 +++++++--- openxlsx2-0.7/openxlsx2/R/class-worksheet.R | 120 ++ openxlsx2-0.7/openxlsx2/R/dates.R | 69 + openxlsx2-0.7/openxlsx2/R/get-named-regions.R | 13 openxlsx2-0.7/openxlsx2/R/helperFunctions.R | 67 + openxlsx2-0.7/openxlsx2/R/openxlsx2.R | 4 openxlsx2-0.7/openxlsx2/R/pugixml.R | 2 openxlsx2-0.7/openxlsx2/R/utils.R | 126 ++ openxlsx2-0.7/openxlsx2/R/wb_functions.R | 97 +- openxlsx2-0.7/openxlsx2/R/wb_load.R | 19 openxlsx2-0.7/openxlsx2/R/wb_styles.R | 208 ++++ openxlsx2-0.7/openxlsx2/R/write.R | 139 ++ openxlsx2-0.7/openxlsx2/R/write_xlsx.R | 2 openxlsx2-0.7/openxlsx2/build/vignette.rds |binary openxlsx2-0.7/openxlsx2/inst/WORDLIST | 39 openxlsx2-0.7/openxlsx2/inst/doc/conditional-formatting.html | 26 openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_charts_manual.html | 14 openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_formulas_manual.R |only openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_formulas_manual.Rmd |only openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_formulas_manual.html |only openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_style_manual.R | 208 +++- openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_style_manual.Rmd | 226 +++- openxlsx2-0.7/openxlsx2/inst/doc/openxlsx2_style_manual.html | 430 +++++---- openxlsx2-0.7/openxlsx2/man/convert_date.Rd | 16 openxlsx2-0.7/openxlsx2/man/create_dxfs_style.Rd | 6 openxlsx2-0.7/openxlsx2/man/create_tablestyle.Rd |only openxlsx2-0.7/openxlsx2/man/fmt_txt.Rd |only openxlsx2-0.7/openxlsx2/man/named_region.Rd | 4 openxlsx2-0.7/openxlsx2/man/style_mgr.Rd | 37 openxlsx2-0.7/openxlsx2/man/wbChartSheet.Rd | 16 openxlsx2-0.7/openxlsx2/man/wbWorkbook.Rd | 168 +++ openxlsx2-0.7/openxlsx2/man/wbWorksheet.Rd | 50 + openxlsx2-0.7/openxlsx2/man/wb_add_formula.Rd | 3 openxlsx2-0.7/openxlsx2/man/wb_add_ignore_error.Rd |only openxlsx2-0.7/openxlsx2/man/wb_protect.Rd | 2 openxlsx2-0.7/openxlsx2/man/wb_remove_tables.Rd | 4 openxlsx2-0.7/openxlsx2/man/wb_set_sheetview.Rd |only openxlsx2-0.7/openxlsx2/man/wb_to_df.Rd | 11 openxlsx2-0.7/openxlsx2/man/wb_update_table.Rd |only openxlsx2-0.7/openxlsx2/man/write_data.Rd | 1 openxlsx2-0.7/openxlsx2/man/write_formula.Rd | 3 openxlsx2-0.7/openxlsx2/man/write_xlsx.Rd | 2 openxlsx2-0.7/openxlsx2/src/RcppExports.cpp | 9 openxlsx2-0.7/openxlsx2/src/helper_functions.cpp | 34 openxlsx2-0.7/openxlsx2/src/openxlsx2_types.h | 5 openxlsx2-0.7/openxlsx2/src/strings_xml.cpp | 20 openxlsx2-0.7/openxlsx2/tests/testthat/test-Workbook_properties.R | 27 openxlsx2-0.7/openxlsx2/tests/testthat/test-class-comment.R | 5 openxlsx2-0.7/openxlsx2/tests/testthat/test-class-workbook-wrappers.R | 34 openxlsx2-0.7/openxlsx2/tests/testthat/test-class-worksheet.R | 22 openxlsx2-0.7/openxlsx2/tests/testthat/test-conditional_formatting.R | 2 openxlsx2-0.7/openxlsx2/tests/testthat/test-date_time_conversion.R | 62 + openxlsx2-0.7/openxlsx2/tests/testthat/test-deleting_tables.R | 38 openxlsx2-0.7/openxlsx2/tests/testthat/test-formulas.R | 40 openxlsx2-0.7/openxlsx2/tests/testthat/test-loading_workbook_tables.R | 12 openxlsx2-0.7/openxlsx2/tests/testthat/test-named_regions.R | 2 openxlsx2-0.7/openxlsx2/tests/testthat/test-read_sources.R | 20 openxlsx2-0.7/openxlsx2/tests/testthat/test-read_xlsx_random_seed.R | 21 openxlsx2-0.7/openxlsx2/tests/testthat/test-remove_worksheets.R | 74 + openxlsx2-0.7/openxlsx2/tests/testthat/test-styles_xml.R | 2 openxlsx2-0.7/openxlsx2/tests/testthat/test-tables.R |only openxlsx2-0.7/openxlsx2/tests/testthat/test-utils.R | 45 openxlsx2-0.7/openxlsx2/tests/testthat/test-wb_styles.R | 27 openxlsx2-0.7/openxlsx2/tests/testthat/test-writing_posixct.R | 3 openxlsx2-0.7/openxlsx2/vignettes/openxlsx2_formulas_manual.Rmd |only openxlsx2-0.7/openxlsx2/vignettes/openxlsx2_style_manual.Rmd | 226 +++- 83 files changed, 3200 insertions(+), 723 deletions(-)
Title: Simplify 'ggplot2' Visualisation
Description: Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions.
Author: David Hodge [aut, cre, cph] ,
Nik Mitchell [ctb]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggblanket versions 1.8.0 dated 2023-04-24 and 2.0.0 dated 2023-05-26
ggblanket-1.8.0/ggblanket/R/add_tooltip.R |only ggblanket-1.8.0/ggblanket/man/add_tooltip.Rd |only ggblanket-1.8.0/ggblanket/man/na_if_double.Rd |only ggblanket-1.8.0/ggblanket/man/pal_default.Rd |only ggblanket-1.8.0/ggblanket/man/pal_na_default.Rd |only ggblanket-2.0.0/ggblanket/DESCRIPTION | 14 ggblanket-2.0.0/ggblanket/LICENSE | 2 ggblanket-2.0.0/ggblanket/MD5 | 173 - ggblanket-2.0.0/ggblanket/NAMESPACE | 6 ggblanket-2.0.0/ggblanket/NEWS.md | 24 ggblanket-2.0.0/ggblanket/R/gg_area.R | 1120 +++++----- ggblanket-2.0.0/ggblanket/R/gg_bar.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_bin2d.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_blank.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_boxplot.R | 1117 ++++----- ggblanket-2.0.0/ggblanket/R/gg_col.R | 1120 +++++----- ggblanket-2.0.0/ggblanket/R/gg_crossbar.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_density.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_errorbar.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_freqpoly.R | 1112 +++++---- ggblanket-2.0.0/ggblanket/R/gg_function.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_hex.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_histogram.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_jitter.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_label.R | 1120 +++++----- ggblanket-2.0.0/ggblanket/R/gg_line.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_linerange.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_path.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_point.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_pointrange.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_polygon.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_qq.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_raster.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_rect.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_ribbon.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_segment.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_sf.R | 970 +++++++- ggblanket-2.0.0/ggblanket/R/gg_smooth.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_step.R | 1119 ++++----- ggblanket-2.0.0/ggblanket/R/gg_text.R | 1120 +++++----- ggblanket-2.0.0/ggblanket/R/gg_tile.R | 1118 ++++----- ggblanket-2.0.0/ggblanket/R/gg_violin.R | 1120 +++++----- ggblanket-2.0.0/ggblanket/R/pal.R | 44 ggblanket-2.0.0/ggblanket/R/utils.R | 2 ggblanket-2.0.0/ggblanket/README.md | 35 ggblanket-2.0.0/ggblanket/build/vignette.rds |binary ggblanket-2.0.0/ggblanket/inst/doc/ggblanket.R | 500 ++-- ggblanket-2.0.0/ggblanket/inst/doc/ggblanket.Rmd | 715 ++---- ggblanket-2.0.0/ggblanket/inst/doc/ggblanket.html | 988 +++----- ggblanket-2.0.0/ggblanket/man/figures/README-setup-1.png |only ggblanket-2.0.0/ggblanket/man/figures/README-setup-2.png |only ggblanket-2.0.0/ggblanket/man/figures/README-unnamed-chunk-2-1.png |binary ggblanket-2.0.0/ggblanket/man/figures/README-unnamed-chunk-3-1.png |binary ggblanket-2.0.0/ggblanket/man/figures/README-unnamed-chunk-4-1.png |binary ggblanket-2.0.0/ggblanket/man/gg_area.Rd | 18 ggblanket-2.0.0/ggblanket/man/gg_bar.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_bin2d.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_blank.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_boxplot.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_col.Rd | 18 ggblanket-2.0.0/ggblanket/man/gg_crossbar.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_density.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_errorbar.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_freqpoly.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_function.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_hex.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_histogram.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_jitter.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_label.Rd | 18 ggblanket-2.0.0/ggblanket/man/gg_line.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_linerange.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_path.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_point.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_pointrange.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_polygon.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_qq.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_raster.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_rect.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_ribbon.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_segment.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_sf.Rd | 11 ggblanket-2.0.0/ggblanket/man/gg_smooth.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_step.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_text.Rd | 18 ggblanket-2.0.0/ggblanket/man/gg_tile.Rd | 16 ggblanket-2.0.0/ggblanket/man/gg_violin.Rd | 18 ggblanket-2.0.0/ggblanket/man/ggblanket-package.Rd | 2 ggblanket-2.0.0/ggblanket/man/na_if_inf.Rd |only ggblanket-2.0.0/ggblanket/man/pal_blue.Rd |only ggblanket-2.0.0/ggblanket/man/pal_grey.Rd |only ggblanket-2.0.0/ggblanket/man/pal_hue.Rd |only ggblanket-2.0.0/ggblanket/vignettes/ggblanket.Rmd | 715 ++---- ggblanket-2.0.0/ggblanket/vignettes/screenshot_autotab_col.png |only ggblanket-2.0.0/ggblanket/vignettes/screenshot_autotab_y.png |only 94 files changed, 19820 insertions(+), 19558 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-10 1.0.1