Title: Variance Components Testing for Linear and Nonlinear Mixed
Effects Models
Description: An implementation of the Likelihood ratio Test (LRT) for testing that,
in a (non)linear mixed effects model, the variances of a subset of the random
effects are equal to zero. There is no restriction on the subset of variances
that can be tested: for example, it is possible to test that all the variances
are equal to zero. Note that the implemented test is asymptotic.
This package should be used on model fits from packages 'nlme', 'lmer', and 'saemix'.
Charlotte Baey, Paul-Henry Cournède and Estelle Kuhn (2019) <doi:10.1016/j.csda.2019.01.014>.
Author: Charlotte Baey [aut, cre] ,
Estelle Kuhn [aut]
Maintainer: Charlotte Baey <charlotte.baey@univ-lille.fr>
Diff between varTestnlme versions 1.3.3 dated 2023-05-23 and 1.3.4 dated 2023-05-28
DESCRIPTION | 6 MD5 | 6 NAMESPACE | 1 inst/doc/varTestnlme.html | 533 ++++++++++++++++++++++++---------------------- 4 files changed, 293 insertions(+), 253 deletions(-)
Title: Tools for Handling Spatial Objects
Description: Please note that 'maptools' will be retired during October 2023, plan transition at your earliest convenience (see <https://r-spatial.org/r/2023/05/15/evolution4.html> and earlier blogs for guidance); some functionality will be moved to 'sp'. Set of tools for manipulating geographic data. The package also provides interface wrappers for exchanging spatial objects with packages such as 'PBSmapping', 'spatstat.geom', 'maps', and others.
Author: Roger Bivand [cre, aut] ,
Nicholas Lewin-Koh [aut],
Edzer Pebesma [ctb],
Eric Archer [ctb],
Adrian Baddeley [ctb],
Nick Bearman [ctb],
Hans-Joerg Bibiko [ctb],
Steven Brey [ctb],
Jonathan Callahan [ctb],
German Carrillo [ctb],
Stephane Dray [ctb],
Dav [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between maptools versions 1.1-6 dated 2022-12-14 and 1.1-7 dated 2023-05-28
maptools-1.1-6/maptools/R/Rgshhs.R |only maptools-1.1-6/maptools/data/gpcholes.rda |only maptools-1.1-6/maptools/inst/share/gshhs_c.b |only maptools-1.1-6/maptools/inst/share/wdb_borders_c.b |only maptools-1.1-6/maptools/man/Rgshhs.Rd |only maptools-1.1-6/maptools/man/elide-methods.Rd |only maptools-1.1-6/maptools/man/holepolys.Rd |only maptools-1.1-7/maptools/DESCRIPTION | 12 +-- maptools-1.1-7/maptools/MD5 | 41 +++++-------- maptools-1.1-7/maptools/NAMESPACE | 12 --- maptools-1.1-7/maptools/NEWS.md | 12 +++ maptools-1.1-7/maptools/R/AAA.R | 24 ++----- maptools-1.1-7/maptools/R/checkHoles.R | 39 ------------ maptools-1.1-7/maptools/R/elide.R | 22 +++++-- maptools-1.1-7/maptools/R/nowrapRecenter.R | 46 --------------- maptools-1.1-7/maptools/R/union.R | 55 ------------------ maptools-1.1-7/maptools/build/vignette.rds |binary maptools-1.1-7/maptools/data/SplashDams.rda |binary maptools-1.1-7/maptools/data/datalist | 1 maptools-1.1-7/maptools/data/wrld_simpl.rda |binary maptools-1.1-7/maptools/inst/doc/combine_maptools.pdf |binary maptools-1.1-7/maptools/man/checkPolygonsHoles.Rd | 10 --- maptools-1.1-7/maptools/man/maptools-deprecated.Rd | 15 ++++ maptools-1.1-7/maptools/man/nowrapRecenter.Rd | 2 maptools-1.1-7/maptools/man/unionSpatialPolygons.Rd | 4 - 25 files changed, 78 insertions(+), 217 deletions(-)
Title: General-Purpose Unconstrained Non-Linear Optimization
Description: An algorithm for general-purpose unconstrained non-linear optimization.
The algorithm is of quasi-Newton type with BFGS updating of the inverse
Hessian and soft line search with a trust region type monitoring of the
input to the line search algorithm. The interface of 'ucminf' is
designed for easy interchange with 'optim'.
Author: K Herve Dakpo [ctb, cre],
Hans Bruun Nielsen [aut],
Stig Bousgaard Mortensen [aut]
Maintainer: K Herve Dakpo <k-herve.dakpo@inrae.fr>
Diff between ucminf versions 1.1-4.3 dated 2023-05-18 and 1.2.0 dated 2023-05-28
ucminf-1.1-4.3/ucminf/inst |only ucminf-1.2.0/ucminf/DESCRIPTION | 28 +- ucminf-1.2.0/ucminf/MD5 | 13 - ucminf-1.2.0/ucminf/NAMESPACE | 6 ucminf-1.2.0/ucminf/NEWS.md |only ucminf-1.2.0/ucminf/R/ucminf-package.R |only ucminf-1.2.0/ucminf/R/ucminf.R | 354 +++++++++++++++++++++--------- ucminf-1.2.0/ucminf/README.md |only ucminf-1.2.0/ucminf/man/ucminf-package.Rd |only ucminf-1.2.0/ucminf/man/ucminf.Rd | 326 ++++++++++++--------------- 10 files changed, 427 insertions(+), 300 deletions(-)
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is
a socket library providing high-performance scalability protocols, a
cross-platform standard for messaging and communications. Serves as a
concurrency framework for building distributed applications, utilising 'aio'
objects which resolve automatically upon completion of asynchronous
operations. Implements synchronisation primitives, allowing R to wait upon
events being signalled by concurrent messaging threads.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between nanonext versions 0.8.3 dated 2023-05-06 and 0.9.0 dated 2023-05-28
nanonext-0.8.3/nanonext/inst/nng-c5e9d8a.tar.xz |only nanonext-0.8.3/nanonext/man/nanonext_version.Rd |only nanonext-0.9.0/nanonext/DESCRIPTION | 8 nanonext-0.9.0/nanonext/MD5 | 68 +++--- nanonext-0.9.0/nanonext/NAMESPACE | 3 nanonext-0.9.0/nanonext/NEWS.md | 16 + nanonext-0.9.0/nanonext/R/aio.R | 18 - nanonext-0.9.0/nanonext/R/context.R | 3 nanonext-0.9.0/nanonext/R/nano.R | 9 nanonext-0.9.0/nanonext/R/nanonext-package.R | 4 nanonext-0.9.0/nanonext/R/ncurl.R | 21 - nanonext-0.9.0/nanonext/R/stream.R | 13 - nanonext-0.9.0/nanonext/R/tls.R | 63 +++++ nanonext-0.9.0/nanonext/R/utils.R | 14 - nanonext-0.9.0/nanonext/README.md | 99 ++++----- nanonext-0.9.0/nanonext/configure | 34 ++- nanonext-0.9.0/nanonext/configure.ucrt | 3 nanonext-0.9.0/nanonext/inst/CITATION | 2 nanonext-0.9.0/nanonext/inst/nng-8e1836f.tar.xz |only nanonext-0.9.0/nanonext/man/context.Rd | 4 nanonext-0.9.0/nanonext/man/dot-unresolved.Rd | 15 - nanonext-0.9.0/nanonext/man/nanonext-package.Rd | 4 nanonext-0.9.0/nanonext/man/ncurl.Rd | 13 - nanonext-0.9.0/nanonext/man/ncurl_session.Rd | 9 nanonext-0.9.0/nanonext/man/stream.Rd | 9 nanonext-0.9.0/nanonext/man/tls_config.Rd |only nanonext-0.9.0/nanonext/man/unresolved.Rd | 4 nanonext-0.9.0/nanonext/src/Makevars.win | 7 nanonext-0.9.0/nanonext/src/aio.c | 258 ++++++++++++++++++++---- nanonext-0.9.0/nanonext/src/core.c | 1 nanonext-0.9.0/nanonext/src/init.c | 21 + nanonext-0.9.0/nanonext/src/nanonext.h | 14 - nanonext-0.9.0/nanonext/src/protocol.c | 1 nanonext-0.9.0/nanonext/src/thread.c | 1 nanonext-0.9.0/nanonext/src/tls.c | 13 - nanonext-0.9.0/nanonext/src/utils.c | 133 ++++++++++-- nanonext-0.9.0/nanonext/tests/tests.R | 63 ++++- 37 files changed, 679 insertions(+), 269 deletions(-)
Title: Linguistic Typology and Mapping
Description: Provides R with the Glottolog database <https://glottolog.org/> and some more abilities for purposes of linguistic mapping. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <https://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://docs.ropensci.org/lingtypology/> and package vignette. Maps created by this package can be used both for the investigation and linguistic teaching. In addition, package provides an ability to download data from typological databases such as WALS, AUTOTYP and some others and to create your own database website.
Author: George Moroz [aut, cre] ,
Kirill Koncha [ctb] ,
Mikhail Leonov [ctb],
Anna Smirnova [ctb],
Ekaterina Zalivina [ctb]
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between lingtypology versions 1.1.13 dated 2023-04-21 and 1.1.14 dated 2023-05-28
DESCRIPTION | 6 MD5 | 66 +-- NAMESPACE | 2 NEWS | 8 R/autotyp.R | 2 R/autotyp.feature.R | 14 R/grambank.feature.R | 17 R/lang.aff.R | 2 R/map.feature.R | 72 +-- R/uralex.R | 6 R/uralex.feature.R | 5 build/vignette.rds |binary data/autotyp.RData |binary data/uralex.RData |binary inst/doc/lingtypology_creating_maps.R | 27 + inst/doc/lingtypology_creating_maps.Rmd | 60 ++ inst/doc/lingtypology_creating_maps.html | 502 ++++++++++++------------- inst/doc/lingtypology_db_API.R | 4 inst/doc/lingtypology_db_API.Rmd | 6 inst/doc/lingtypology_db_API.html | 12 inst/doc/lingtypology_dplyr.R | 56 +- inst/doc/lingtypology_dplyr.Rmd | 66 +-- inst/doc/lingtypology_dplyr.html | 70 +-- inst/doc/lingtypology_glottolog_functions.Rmd | 5 inst/doc/lingtypology_glottolog_functions.html | 4 inst/doc/lingtypology_intro.Rmd | 16 inst/doc/lingtypology_intro.html | 31 + man/autotyp.Rd | 2 man/uralex.Rd | 6 vignettes/lingtypology_creating_maps.Rmd | 60 ++ vignettes/lingtypology_db_API.Rmd | 6 vignettes/lingtypology_dplyr.Rmd | 66 +-- vignettes/lingtypology_glottolog_functions.Rmd | 5 vignettes/lingtypology_intro.Rmd | 16 34 files changed, 697 insertions(+), 523 deletions(-)
Title: A Test Environment for HTTP Requests
Description: Testing and documenting code that communicates with remote servers
can be painful. Dealing with authentication, server state,
and other complications can make testing seem too costly to
bother with. But it doesn't need to be that hard. This package enables one
to test all of the logic on the R sides of the API in your package without
requiring access to the remote service. Importantly, it provides three
contexts that mock the network connection in different ways, as well as
testing functions to assert that HTTP requests were---or were
not---made. It also allows one to safely record real API responses to use as
test fixtures. The ability to save responses and load them offline also
enables one to write vignettes and other dynamic documents that can be
distributed without access to a live server.
Author: Neal Richardson [aut, cre] ,
Jonathan Keane [ctb],
Maelle Salmon [ctb]
Maintainer: Neal Richardson <neal.p.richardson@gmail.com>
Diff between httptest versions 4.1.0 dated 2021-09-22 and 4.2.0 dated 2023-05-28
DESCRIPTION | 17 MD5 | 49 +- NAMESPACE | 1 NEWS.md | 12 R/capture-requests.R | 6 R/expect-request.R | 7 R/find-requester.R | 9 R/mock-api.R | 18 R/trace.R | 6 README.md | 4 build/vignette.rds |binary inst/WORDLIST | 15 inst/doc/faq.html | 428 +++++++++++++++++---- inst/doc/httptest.html | 661 +++++++++++++++++++++++++++------ inst/doc/redacting.html | 512 ++++++++++++++++++++----- inst/doc/vignettes.html | 459 ++++++++++++++++++---- man/expect_verb.Rd | 6 man/get_current_requester.Rd |only tests/spelling.R | 2 tests/testthat/setup.R | 23 - tests/testthat/test-capture-requests.R | 6 tests/testthat/test-expect-header.R | 1 tests/testthat/test-mock-api.R | 1 tests/testthat/test-mock-dir.R | 21 + tests/testthat/test-trace.R | 26 + tests/testthat/test-without-internet.R | 1 26 files changed, 1844 insertions(+), 447 deletions(-)
Title: Analyze and Create Elegant Directed Acyclic Graphs
Description: Tidy, analyze, and plot directed acyclic graphs (DAGs).
'ggdag' is built on top of 'dagitty', an R package that uses the
'DAGitty' web tool (<http://dagitty.net>) for creating and analyzing
DAGs. 'ggdag' makes it easy to tidy and plot 'dagitty' objects using
'ggplot2' and 'ggraph', as well as common analytic and graphical
functions, such as determining adjustment sets and node relationships.
Author: Malcolm Barrett [aut, cre]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between ggdag versions 0.2.9 dated 2023-05-22 and 0.2.10 dated 2023-05-28
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 3 +++ R/utils.R | 4 +++- README.md | 2 +- inst/doc/bias-structures.html | 4 ++-- inst/doc/intro-to-dags.html | 4 ++-- inst/doc/intro-to-ggdag.html | 4 ++-- 8 files changed, 23 insertions(+), 18 deletions(-)
Title: Bindings to the 'Geospatial Data Abstraction Library' Raster API
Description: Interface to the raster API of the 'Geospatial Data Abstraction
Library' ('GDAL') supporting manual creation of uninitialized datasets,
creation from existing raster as template, low level I/O, configuration of
virtual raster (VRT), coordinate transformation, and access to 'gdalwarp'
for reprojection. Convenience functions facilitate working with spatial
reference systems. Calling signatures resemble the native C, C++ and
Python APIs provided by the 'GDAL' project (<https://gdal.org>).
Bindings to 'GDAL' are implemented in class 'GDALRaster' along with
several stand-alone functions. Additional functionality includes: class
'RunningStats' for efficient summary statistics on large data streams;
class 'CmbTable' for counting unique combinations of integer values with a
hash table; a raster overlay utility to identify and count unique
combinations across multiple inputs; and a calculation utility for
evaluating an R expression on raster layers with pixel coordinates
available as vari [...truncated...]
Author: Chris Toney [aut, cre],
Frank Warmerdam [ctb, cph] ,
Even Rouault [ctb, cph] ,
Marius Appel [ctb, cph] ,
Daniel James [ctb, cph] ,
Peter Dimov [ctb, cph]
Maintainer: Chris Toney <chris.toney@usda.gov>
Diff between gdalraster versions 1.1.1 dated 2023-05-24 and 1.2.0 dated 2023-05-28
gdalraster-1.1.1/gdalraster/src/Makevars.ucrt |only gdalraster-1.1.1/gdalraster/tools |only gdalraster-1.2.0/gdalraster/DESCRIPTION | 33 ++++---- gdalraster-1.2.0/gdalraster/MD5 | 69 +++++++++--------- gdalraster-1.2.0/gdalraster/NEWS.md | 16 +++- gdalraster-1.2.0/gdalraster/R/RcppExports.R | 45 ++++++++++- gdalraster-1.2.0/gdalraster/R/gdalraster.R | 25 ++---- gdalraster-1.2.0/gdalraster/R/gdalraster_proc.R | 28 +++---- gdalraster-1.2.0/gdalraster/R/geom.R | 22 ++++- gdalraster-1.2.0/gdalraster/R/running_stats.R | 3 gdalraster-1.2.0/gdalraster/README.md | 8 +- gdalraster-1.2.0/gdalraster/configure | 18 ++-- gdalraster-1.2.0/gdalraster/configure.ac | 2 gdalraster-1.2.0/gdalraster/inst/CITATION |only gdalraster-1.2.0/gdalraster/inst/COPYRIGHTS | 20 ++--- gdalraster-1.2.0/gdalraster/man/GDALRaster-class.Rd | 25 ++---- gdalraster-1.2.0/gdalraster/man/RunningStats-class.Rd | 3 gdalraster-1.2.0/gdalraster/man/bbox_intersect.Rd | 8 +- gdalraster-1.2.0/gdalraster/man/bbox_to_wkt.Rd | 4 - gdalraster-1.2.0/gdalraster/man/calc.Rd | 7 - gdalraster-1.2.0/gdalraster/man/combine.Rd | 4 - gdalraster-1.2.0/gdalraster/man/gdalraster-package.Rd | 5 - gdalraster-1.2.0/gdalraster/man/has_geos.Rd |only gdalraster-1.2.0/gdalraster/man/inv_project.Rd | 1 gdalraster-1.2.0/gdalraster/man/rasterFromRaster.Rd | 3 gdalraster-1.2.0/gdalraster/man/rasterToVRT.Rd | 6 - gdalraster-1.2.0/gdalraster/man/set_config_option.Rd | 2 gdalraster-1.2.0/gdalraster/man/srs_is_same.Rd |only gdalraster-1.2.0/gdalraster/man/srs_to_wkt.Rd | 2 gdalraster-1.2.0/gdalraster/man/transform_xy.Rd | 1 gdalraster-1.2.0/gdalraster/src/Makevars.win | 35 ++++----- gdalraster-1.2.0/gdalraster/src/RcppExports.cpp | 23 ++++-- gdalraster-1.2.0/gdalraster/src/gdal_exp.cpp | 10 +- gdalraster-1.2.0/gdalraster/src/gdalraster.cpp | 49 +++--------- gdalraster-1.2.0/gdalraster/src/geos_wkt.cpp | 14 ++- gdalraster-1.2.0/gdalraster/src/geos_wkt.h | 2 gdalraster-1.2.0/gdalraster/src/transform.cpp | 2 gdalraster-1.2.0/gdalraster/src/wkt_conv.cpp | 47 +++++++++++- 38 files changed, 323 insertions(+), 219 deletions(-)
Title: Minimal R/Shiny Interface to JavaScript Library 'ECharts'
Description: Deliver the full functionality of 'ECharts' with minimal overhead. 'echarty' users build R lists for 'ECharts' API. Lean set of powerful commands.
Author: Larry Helgason, with initial code from John Coene's library echarts4r
Maintainer: Larry Helgason <larry@helgasoft.com>
Diff between echarty versions 1.5.0 dated 2022-11-24 and 1.5.4 dated 2023-05-28
DESCRIPTION | 26 MD5 | 53 - NEWS.md | 36 - R/echarty.R | 1376 ++++++++-------------------------------- R/examples.R | 160 ++-- R/util.R |only demo/eshiny.R | 6 inst/htmlwidgets/echarty.js | 79 +- inst/js/echarts.min.js | 4 inst/js/renderers.js | 114 +++ inst/themes/dark-mushroom.js | 7 man/Introduction.Rd | 10 man/ec.clmn.Rd | 19 man/ec.data.Rd | 59 - man/ec.examples.Rd | 157 ++-- man/ec.fromJson.Rd | 70 +- man/ec.init.Rd | 225 +++--- man/ec.inspect.Rd | 2 man/ec.paxis.Rd | 2 man/ec.upd.Rd | 10 man/ec.util.Rd | 43 - man/ecr.band.Rd | 45 - man/ecr.ebars.Rd | 126 +-- tests/testthat/test-ec.clmn.R | 59 - tests/testthat/test-ec.util.R | 140 +++- tests/testthat/test-other.R | 104 ++- tests/testthat/test-presets.R | 51 + tests/testthat/test-renderers.R | 147 +++- 28 files changed, 1416 insertions(+), 1714 deletions(-)
Title: The One- And Two-Sided Hodrick-Prescott Filter
Description: Provides two functions that implement the one-sided and
two-sided versions of the Hodrick-Prescott filter. The one-sided
version is a Kalman filter-based implementation, whereas the two-
sided version uses sparse matrices for improved efficiency.
References:
Hodrick, R. J., and Prescott, E. C. (1997) <doi:10.2307/2953682>
Mcelroy, T. (2008) <doi:10.1111/j.1368-423X.2008.00230.x>
Meyer-Gohde, A. (2010) <https://ideas.repec.org/c/dge/qmrbcd/181.html>
For more references, see the vignette.
Author: Alexandru Monahov
Maintainer: Alexandru Monahov <alexandru.monahov@proton.me>
Diff between hpfilter versions 1.0.1 dated 2023-02-25 and 1.0.2 dated 2023-05-28
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 8 ++++++++ R/hp1.R | 16 ++++++++-------- R/hp2.R | 30 ++++++++++++++++++------------ README.md | 2 +- inst/doc/hpfilter_guide.html | 4 ++-- man/hp1.Rd | 16 ++++++++-------- man/hp2.Rd | 16 ++++++++-------- 9 files changed, 64 insertions(+), 50 deletions(-)
Title: Work with the Doges/Dogaresse Dataset
Description: Work with data on Venetian doges and dogaresse and the noble families of the Republic of Venice, and use it for social network analysis, as used in Merelo (2022) <arXiv:2209.07334>.
Author: Juan Julian Merelo-Guervos
Maintainer: Juan Julian Merelo-Guervos <jjmerelo@gmail.com>
Diff between dogesr versions 0.2.0 dated 2023-02-21 and 0.3.0 dated 2023-05-28
DESCRIPTION | 6 - MD5 | 48 +++++---- NEWS.md | 9 + R/marriage.graph.R | 11 -- README.md | 1 build/partial.rdb |binary build/vignette.rds |binary data/doge.families.rda |only data/doges.marriages.rda |only data/doges.rda |binary data/families.rda |binary inst/doc/counting-doge-families.R |only inst/doc/counting-doge-families.Rmd |only inst/doc/counting-doge-families.html |only inst/doc/doges-family-types.Rmd | 4 inst/doc/doges-family-types.html | 170 ++++++++++++++--------------------- inst/doc/doges-social-network.R | 4 inst/doc/doges-social-network.Rmd | 13 +- inst/doc/doges-social-network.html | 52 ++++++---- inst/doc/doges-terms.html | 23 +++- inst/doges.bib | 15 +++ man/doge.families.Rd |only man/doges.marriages.Rd |only man/families.Rd | 2 man/marriage.graph.Rd | 4 tests/testthat/test-dogesdata.R | 2 vignettes/counting-doge-families.Rmd |only vignettes/doges-family-types.Rmd | 4 vignettes/doges-social-network.Rmd | 13 +- 29 files changed, 198 insertions(+), 183 deletions(-)
Title: Tools for Joint Sentiment and Topic Analysis of Textual Data
Description: A framework that joins topic modeling and sentiment analysis of
textual data. The package implements a fast Gibbs sampling estimation of
Latent Dirichlet Allocation (Griffiths and Steyvers (2004)
<doi:10.1073/pnas.0307752101>) and Joint Sentiment/Topic Model (Lin, He,
Everson and Ruger (2012) <doi:10.1109/TKDE.2011.48>). It offers a variety of
helpers and visualizations to analyze the result of topic modeling. The
framework also allows enriching topic models with dates and externally
computed sentiment measures. A flexible aggregation scheme enables the
creation of time series of sentiment or topical proportions from the enriched
topic models. Moreover, a novel method jointly aggregates topic proportions
and sentiment measures to derive time series of topical sentiment.
Author: Olivier Delmarcelle [aut, cre]
,
Samuel Borms [ctb] ,
Chengua Lin [cph] ,
Yulan He [cph] ,
Jose Bernardo [cph] ,
David Robinson [cph] ),
Julia Silge [cph] ,
<https://orcid.org/0000-0002-3671-836X>)
Maintainer: Olivier Delmarcelle <delmarcelle.olivier@gmail.com>
Diff between sentopics versions 0.7.1 dated 2022-05-18 and 0.7.2 dated 2023-05-28
DESCRIPTION | 15 - MD5 | 35 ++-- NAMESPACE | 2 NEWS.md | 5 R/conversions.R | 240 +++++++++++++++++++++++------ R/methods.R | 107 ++++++------- R/others.R | 7 R/timeSeries.R | 90 +++++------ build/vignette.rds |binary inst/doc/Basic_usage.html | 306 ++++++++------------------------------ inst/doc/Topical_time_series.html | 306 ++++++++------------------------------ man/as.LDA.Rd | 16 + man/melt.Rd | 4 man/sentiment_series.Rd | 2 src/Makevars | 5 src/Makevars.win | 1 tests/testthat/Rplots.pdf |only tests/testthat/test-conversions.R | 39 ++++ tests/testthat/test-utils.R | 14 + 19 files changed, 527 insertions(+), 667 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis. See Hunter, Handcock, Butts, Goodreau, and Morris (2008) <doi:10.18637/jss.v024.i03> and Krivitsky, Hunter, Morris, and Klumb (2023) <doi:10.18637/jss.v105.i06>.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre] ,
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb],
Chad Klumb [ctb],
Michal Bojanowski [ctb] ,
[...truncated...]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm versions 4.4.0 dated 2023-01-27 and 4.5.0 dated 2023-05-28
ergm-4.4.0/ergm/BUGS |only ergm-4.4.0/ergm/man/ddsp-ergmTerm-076a318a.Rd |only ergm-4.4.0/ergm/man/desp-ergmTerm-04c7d89a.Rd |only ergm-4.4.0/ergm/man/dgwdsp-ergmTerm-533d79cb.Rd |only ergm-4.4.0/ergm/man/dgwesp-ergmTerm-c07796bb.Rd |only ergm-4.4.0/ergm/man/dgwnsp-ergmTerm-94667ff6.Rd |only ergm-4.4.0/ergm/man/dnsp-ergmTerm-fed3f8fd.Rd |only ergm-4.4.0/ergm/tests/testthat/test-gw-sp.R |only ergm-4.5.0/ergm/DESCRIPTION | 37 ergm-4.5.0/ergm/MD5 | 196 - ergm-4.5.0/ergm/NAMESPACE | 4 ergm-4.5.0/ergm/R/InitErgmConstraint.R | 6 ergm-4.5.0/ergm/R/InitErgmConstraint.blockdiag.R | 12 ergm-4.5.0/ergm/R/InitErgmTerm.R | 908 ----- ergm-4.5.0/ergm/R/InitErgmTerm.dgw_sp.R | 433 -- ergm-4.5.0/ergm/R/approx.hotelling.diff.test.R | 13 ergm-4.5.0/ergm/R/as.network.numeric.R | 79 ergm-4.5.0/ergm/R/control.ergm.R | 103 ergm-4.5.0/ergm/R/ergm.CD.fixed.R | 58 ergm-4.5.0/ergm/R/ergm.Cprepare.R | 6 ergm-4.5.0/ergm/R/ergm.MCMLE.R | 58 ergm-4.5.0/ergm/R/ergm.R | 344 - ergm-4.5.0/ergm/R/ergm.bridge.R | 3 ergm-4.5.0/ergm/R/ergm.errors.R | 10 ergm-4.5.0/ergm/R/ergm.estimate.R | 15 ergm-4.5.0/ergm/R/ergm.getMCMCsample.R | 4 ergm-4.5.0/ergm/R/ergm.initialfit.R | 55 ergm-4.5.0/ergm/R/ergm.mple.R | 96 ergm-4.5.0/ergm/R/ergm.phase12.R | 31 ergm-4.5.0/ergm/R/ergm.pl.R | 16 ergm-4.5.0/ergm/R/ergm.stocapprox.R | 142 ergm-4.5.0/ergm/R/ergm.utility.R | 148 ergm-4.5.0/ergm/R/ergmMPLE.R | 2 ergm-4.5.0/ergm/R/ergm_mplecov.R |only ergm-4.5.0/ergm/R/logLik.ergm.R | 2 ergm-4.5.0/ergm/R/mcmc.diagnostics.ergm.R | 4 ergm-4.5.0/ergm/R/nparam.R | 1 ergm-4.5.0/ergm/R/predict.ergm.R | 8 ergm-4.5.0/ergm/R/rlebdm.R | 5 ergm-4.5.0/ergm/R/simulate.ergm.R | 14 ergm-4.5.0/ergm/R/summary.ergm.R | 6 ergm-4.5.0/ergm/R/zzz.R | 2 ergm-4.5.0/ergm/build/ergm.pdf |binary ergm-4.5.0/ergm/build/partial.rdb |binary ergm-4.5.0/ergm/build/stage23.rdb |only ergm-4.5.0/ergm/build/vignette.rds |binary ergm-4.5.0/ergm/inst/CITATION | 31 ergm-4.5.0/ergm/inst/NEWS.Rd | 81 ergm-4.5.0/ergm/inst/REFERENCES.bib | 16 ergm-4.5.0/ergm/inst/doc/ergm-term-crossRef.html | 555 --- ergm-4.5.0/ergm/inst/doc/ergm.pdf |binary ergm-4.5.0/ergm/inst/doc/nodal_attributes.html | 4 ergm-4.5.0/ergm/inst/include/ergm_util.h | 23 ergm-4.5.0/ergm/man/as.network.numeric.Rd | 16 ergm-4.5.0/ergm/man/b1degrange-ergmTerm-ae4dbc10.Rd | 7 ergm-4.5.0/ergm/man/b1degree-ergmTerm-b23eca4d.Rd | 15 ergm-4.5.0/ergm/man/b1star-ergmTerm-24b65fe7.Rd | 15 ergm-4.5.0/ergm/man/b2degrange-ergmTerm-d16c3697.Rd | 7 ergm-4.5.0/ergm/man/b2star-ergmTerm-76adb9af.Rd | 12 ergm-4.5.0/ergm/man/bd-ergmConstraint-54194cbb.Rd | 2 ergm-4.5.0/ergm/man/control.ergm.Rd | 99 ergm-4.5.0/ergm/man/degrange-ergmTerm-e31fe592.Rd | 7 ergm-4.5.0/ergm/man/degree-ergmTerm-64bfdc89.Rd | 7 ergm-4.5.0/ergm/man/dsp-ergmTerm-1a10473d.Rd | 49 ergm-4.5.0/ergm/man/ergm.mple.Rd | 31 ergm-4.5.0/ergm/man/ergm_cutoff_message.Rd |only ergm-4.5.0/ergm/man/esp-ergmTerm-d2e07fc8.Rd | 49 ergm-4.5.0/ergm/man/gwdsp-ergmTerm-4e3dfd97.Rd | 49 ergm-4.5.0/ergm/man/gwesp-ergmTerm-3d6fb5a8.Rd | 51 ergm-4.5.0/ergm/man/gwnsp-ergmTerm-6def2a32.Rd | 53 ergm-4.5.0/ergm/man/idegrange-ergmTerm-03001d90.Rd | 7 ergm-4.5.0/ergm/man/idegree-ergmTerm-036b6e10.Rd | 7 ergm-4.5.0/ergm/man/istar-ergmTerm-686da871.Rd | 15 ergm-4.5.0/ergm/man/kstar-ergmTerm-9ffb742c.Rd | 15 ergm-4.5.0/ergm/man/nsp-ergmTerm-4586ea4f.Rd | 51 ergm-4.5.0/ergm/man/odegrange-ergmTerm-a29a08d0.Rd | 7 ergm-4.5.0/ergm/man/odegree-ergmTerm-12c180fc.Rd | 7 ergm-4.5.0/ergm/man/ostar-ergmTerm-88787ec2.Rd | 15 ergm-4.5.0/ergm/man/predict.formula.Rd | 1 ergm-4.5.0/ergm/man/to_ergm_Cdouble.Rd | 5 ergm-4.5.0/ergm/src/MCMC.c.template.do_not_include_directly.h | 258 - ergm-4.5.0/ergm/src/MCMC.h.template.do_not_include_directly.h | 5 ergm-4.5.0/ergm/src/changestat.c | 1 ergm-4.5.0/ergm/src/changestats.c | 1525 -------- ergm-4.5.0/ergm/src/changestats.h | 4 ergm-4.5.0/ergm/src/changestats_concurrentties.c | 4 ergm-4.5.0/ergm/src/changestats_dgw_sp.c | 1762 ++++------ ergm-4.5.0/ergm/src/changestats_spcache.c | 10 ergm-4.5.0/ergm/src/changestats_test.c | 14 ergm-4.5.0/ergm/src/init.c | 12 ergm-4.5.0/ergm/tests/testthat/helper-expect-summary.R |only ergm-4.5.0/ergm/tests/testthat/test-as.network.numeric.R |only ergm-4.5.0/ergm/tests/testthat/test-basis.R |only ergm-4.5.0/ergm/tests/testthat/test-bd.R | 38 ergm-4.5.0/ergm/tests/testthat/test-constraints.R | 11 ergm-4.5.0/ergm/tests/testthat/test-ergm-san.R | 8 ergm-4.5.0/ergm/tests/testthat/test-mple-cov.R |only ergm-4.5.0/ergm/tests/testthat/test-mple-target.R | 2 ergm-4.5.0/ergm/tests/testthat/test-networkLite.R |only ergm-4.5.0/ergm/tests/testthat/test-nodrop.R | 30 ergm-4.5.0/ergm/tests/testthat/test-nonunique-names.R | 2 ergm-4.5.0/ergm/tests/testthat/test-stocapprox.R | 2 ergm-4.5.0/ergm/tests/testthat/test-term-bipartite.R | 37 ergm-4.5.0/ergm/tests/testthat/test-term-directed.R | 25 ergm-4.5.0/ergm/tests/testthat/test-term-flexible.R | 75 ergm-4.5.0/ergm/tests/testthat/test-term-gw-sp.R |only ergm-4.5.0/ergm/tests/testthat/test-term-undirected.R | 8 ergm-4.5.0/ergm/vignettes/old.ergm.Rmd.off |only 108 files changed, 2688 insertions(+), 5275 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A C/C++ based package for advanced data transformation and
statistical computing in R that is extremely fast, class-agnostic,
and programmer friendly through a flexible and robust API. Core functionality
includes a rich set of S3 generic grouped and weighted statistical functions
for vectors, matrices and data frames, which provide efficient low-level
vectorizations, OpenMP multithreading, and skip missing values by default.
These are integrated with fast grouping and ordering algorithms (also callable
from C), and efficient data manipulation functions. The package also provides
a flexible and rigorous approach to time series and panel data in R. It further
includes fast functions for common statistical procedures, detailed (grouped,
weighted) summary statistics, powerful tools to work with nested data, fast
data object conversions, functions for memory efficient R programming, and
helpers to effectively deal with variable labels, attributes, and missing data.
It is well integrated wit [...truncated...]
Author: Sebastian Krantz [aut, cre],
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Morgan Jacob [ctb],
Dirk Eddelbuettel [ctb],
Laurent Berge [ctb],
Kevin Tappe [ctb],
R Core Team and contributors worldwide [ctb],
Martyn Plummer [cph],
1999-2016 The R Core Team [ [...truncated...]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 1.9.5 dated 2023-04-07 and 1.9.6 dated 2023-05-28
DESCRIPTION | 8 +- MD5 | 95 +++++++++++++++-------------- NEWS.md | 14 +++- R/BY.R | 12 +-- R/GRP.R | 12 +-- R/collap.R | 54 +++++++++------- R/dapply.R | 6 - R/descr.R | 26 +++++-- R/fcount.R | 2 R/fsubset_ftransform_fmutate.R | 8 +- R/fsummarise.R | 2 R/indexing.R | 8 +- R/psacf.R | 4 - R/psmat.R | 2 R/pwcor_pwcov_pwnobs.R | 2 R/quick_conversion.R | 8 +- R/select_replace_add_vars.R | 9 +- build/vignette.rds |binary inst/doc/collapse_documentation.Rmd | 10 ++- inst/doc/collapse_documentation.html | 25 +++++-- inst/doc/collapse_object_handling.R |only inst/doc/collapse_object_handling.Rmd |only inst/doc/collapse_object_handling.html |only man/GGDC10S.Rd | 69 ++++++++++----------- man/collap.Rd | 16 ++-- man/dapply.Rd | 2 man/descr.Rd | 2 man/efficient-programming.Rd | 4 - man/fast-statistical-functions.Rd | 6 - man/fcumsum.Rd | 2 man/fdiff.Rd | 4 - man/fgrowth.Rd | 4 - man/flag.Rd | 4 - man/fmode.Rd | 2 man/fnth_fmedian.Rd | 2 man/fquantile.Rd | 2 man/fsubset.Rd | 4 - src/base_radixsort.c | 2 src/data.table.h | 32 +-------- src/data.table_init.c | 14 +--- src/data.table_subset.c | 47 +++++++++----- src/fmean.c | 2 src/fsum.c | 4 - src/gsplit.c | 2 src/programming.c | 8 +- tests/testthat/test-fsubset-ftransform.R | 5 + tests/testthat/test-misc.R | 2 tests/testthat/test-miscellaneous-issues.R | 16 ++++ tests/testthat/testthat-problems.rds |only vignettes/collapse_documentation.Rmd | 10 ++- vignettes/collapse_object_handling.Rmd |only 51 files changed, 320 insertions(+), 254 deletions(-)
Title: R Commander Plug-in for the 'WorldFlora' Package
Description: An R Commander plug-in for the 'WorldFlora' package. It was mainly developed to show work flows and scripts for first-time users.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between RcmdrPlugin.WorldFlora versions 1.2 dated 2022-09-07 and 1.3 dated 2023-05-28
DESCRIPTION | 10 ++-- MD5 | 19 +++++--- R/WFO.acceptable.match.GUI.R |only R/WFO.download.GUI.R | 2 R/WFO.match.fuzzyjoin.GUI.R |only R/WorldFlora.get.started.R | 47 ++++++++++++--------- inst/CITATION | 30 +++++++------ inst/ChangeLog | 69 ++++++++++++++++++-------------- inst/etc/Getting-started-WorldFlora.txt |only inst/etc/menus.txt | 41 ++++++++++--------- man/RcmdrPlugin.WorldFlora-internal.Rd | 2 man/WorldFlora.get.started.Rd | 18 ++++++++ 12 files changed, 143 insertions(+), 95 deletions(-)
More information about RcmdrPlugin.WorldFlora at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-10 0.2-0
2023-02-18 0.1-2
2022-12-14 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-28 3.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-06 1.1.1
2022-05-30 1.1.0
2021-02-18 1.0.1
2020-05-28 1.0.0
2019-08-09 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-18 1.4.2
2023-05-10 1.4.1
2023-04-18 1.3.3
2023-03-31 1.3.1
2023-02-03 1.1.1
2022-12-23 1.0.1
Title: Analysis of Augmented Randomised Complete Block Designs
Description: Functions for analysis of data generated from experiments in
augmented randomised complete block design according to Federer, W.T.
(1961) <doi:10.2307/2527837>. Computes analysis of variance, adjusted
means, descriptive statistics, genetic variability statistics etc.
Further includes data visualization and report generation functions.
Author: J. Aravind [aut, cre] ,
S. Mukesh Sankar [aut],
Dhammaprakash Pandhari Wankhede [aut]
,
Vikender Kaur [aut],
ICAR-NBGPR [cph]
Maintainer: J. Aravind <j.aravind@icar.gov.in>
Diff between augmentedRCBD versions 0.1.5 dated 2021-06-12 and 0.1.6 dated 2023-05-28
augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-12084.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-12632.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-14248.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-17692.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-18776.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-19248.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-2168.tex |only augmentedRCBD-0.1.5/augmentedRCBD/vignettes/tmp-pdfcrop-2356.tex |only augmentedRCBD-0.1.6/augmentedRCBD/DESCRIPTION | 37 augmentedRCBD-0.1.6/augmentedRCBD/MD5 | 78 augmentedRCBD-0.1.6/augmentedRCBD/NAMESPACE | 8 augmentedRCBD-0.1.6/augmentedRCBD/NEWS.md | 15 augmentedRCBD-0.1.6/augmentedRCBD/R/augmentedRCBD.R | 365 +- augmentedRCBD-0.1.6/augmentedRCBD/R/augmentedRCBD.bulk.R | 175 - augmentedRCBD-0.1.6/augmentedRCBD/R/describe.augmentedRCBD.R | 4 augmentedRCBD-0.1.6/augmentedRCBD/R/freqdist.augmentedRCBD.R | 8 augmentedRCBD-0.1.6/augmentedRCBD/R/globals.R | 10 augmentedRCBD-0.1.6/augmentedRCBD/R/gva.augmentedRCBD.R | 7 augmentedRCBD-0.1.6/augmentedRCBD/R/print.augmentedRCBD.R | 73 augmentedRCBD-0.1.6/augmentedRCBD/R/print.augmentedRCBD.bulk.R | 225 + augmentedRCBD-0.1.6/augmentedRCBD/R/report.augmentedRCBD.R | 1129 ++++++- augmentedRCBD-0.1.6/augmentedRCBD/R/report.augmentedRCBD.bulk.R | 1447 ++++++++-- augmentedRCBD-0.1.6/augmentedRCBD/R/xtra.R | 2 augmentedRCBD-0.1.6/augmentedRCBD/README.md | 192 - augmentedRCBD-0.1.6/augmentedRCBD/build/augmentedRCBD.pdf |binary augmentedRCBD-0.1.6/augmentedRCBD/build/partial.rdb |binary augmentedRCBD-0.1.6/augmentedRCBD/build/stage23.rdb |only augmentedRCBD-0.1.6/augmentedRCBD/build/vignette.rds |binary augmentedRCBD-0.1.6/augmentedRCBD/inst/CITATION | 50 augmentedRCBD-0.1.6/augmentedRCBD/inst/REFERENCES.bib | 46 augmentedRCBD-0.1.6/augmentedRCBD/inst/doc/Data_Analysis_with_augmentedRCBD.Rmd | 120 augmentedRCBD-0.1.6/augmentedRCBD/inst/doc/Data_Analysis_with_augmentedRCBD.pdf |binary augmentedRCBD-0.1.6/augmentedRCBD/inst/extdata/augmentedRCBD.svg | 332 -- augmentedRCBD-0.1.6/augmentedRCBD/inst/schemaorg.json |only augmentedRCBD-0.1.6/augmentedRCBD/inst/template.docx |binary augmentedRCBD-0.1.6/augmentedRCBD/man/augmentedRCBD.Rd | 4 augmentedRCBD-0.1.6/augmentedRCBD/man/augmentedRCBD.bulk.Rd | 21 augmentedRCBD-0.1.6/augmentedRCBD/man/print.augmentedRCBD.Rd | 5 augmentedRCBD-0.1.6/augmentedRCBD/man/report.augmentedRCBD.Rd | 64 augmentedRCBD-0.1.6/augmentedRCBD/man/report.augmentedRCBD.bulk.Rd | 37 augmentedRCBD-0.1.6/augmentedRCBD/vignettes/Data_Analysis_with_augmentedRCBD.Rmd | 120 augmentedRCBD-0.1.6/augmentedRCBD/vignettes/REFERENCES.bib | 46 augmentedRCBD-0.1.6/augmentedRCBD/vignettes/augRCBDbulkexcel.png |only augmentedRCBD-0.1.6/augmentedRCBD/vignettes/augRCBDbulkword.png |binary augmentedRCBD-0.1.6/augmentedRCBD/vignettes/augRCBDexcel.png |only augmentedRCBD-0.1.6/augmentedRCBD/vignettes/augRCBDword.png |binary 46 files changed, 3410 insertions(+), 1210 deletions(-)
Title: Oblique Decision Random Forest for Classification and Regression
Description: The oblique decision tree (ODT) uses linear combinations of
predictors as partitioning variables in a decision tree. Oblique
Decision Random Forest (ODRF) is an ensemble of multiple ODTs
generated by feature bagging. Both can be used for classification and
regression as supplements to the classical CART of Breiman (1984)
<DOI:10.1201/9781315139470> and Random Forest of Breiman (2001)
<DOI:10.1023/A:1010933404324> respectively.
Author: Yu Liu [aut, cre, cph],
Yingcun Xia [aut]
Maintainer: Yu Liu <liuyuchina123@gmail.com>
Diff between ODRF versions 0.0.3 dated 2023-03-16 and 0.0.4 dated 2023-05-28
DESCRIPTION | 11 MD5 | 69 +++--- NEWS.md | 10 R/Accuracy.R | 34 +-- R/ODRF.R | 110 ++++----- R/ODT.R | 96 ++++++-- R/RotMat.R | 4 R/VarImp.R | 298 ++++++++++++++++----------- R/as_party_ODT.R | 36 +-- R/best_cut_node.R | 4 R/defaults.R | 9 R/online_ODRF.R | 109 +++++---- R/online_ODT.R | 100 ++++++--- R/plot_ODT.R | 2 R/predictTree.R |only R/predict_ODRF.R | 82 ++++--- R/predict_ODT.R | 124 ++++------- R/print_ODRF.R | 2 R/prune_ODRF.R | 110 +++++---- R/prune_ODT.R | 92 +++----- inst/WORDLIST | 4 inst/doc/Oblique-Decision-Random-Forest.html | 79 +++---- man/ODRF.Rd | 27 +- man/ODT.Rd | 17 - man/VarImp.Rd | 36 ++- man/best.cut.node.Rd | 4 man/online.ODRF.Rd | 4 man/online.ODT.Rd | 4 man/predict.ODRF.Rd | 5 src/gini_split.cpp | 11 src/infogain_split.cpp | 12 - src/mse_split.cpp | 12 - tests/testthat/test-ODRF.R | 4 tests/testthat/test-ODT.R | 13 - tests/testthat/test-predict_ODRF.R | 4 tests/testthat/test-predict_ODT.R | 6 36 files changed, 863 insertions(+), 681 deletions(-)