Title: Tidy Statistical Inference
Description: The objective of this package is to perform inference using
an expressive statistical grammar that coheres with the tidy design
framework.
Author: Andrew Bray [aut],
Chester Ismay [aut] ,
Evgeni Chasnovski [aut] ,
Simon Couch [aut, cre] ,
Ben Baumer [aut] ,
Mine Cetinkaya-Rundel [aut] ,
Ted Laderas [ctb] ,
Nick Solomon [ctb],
Johanna Hardin [ctb],
Albert Y. Kim [ctb] ,
Neal Fultz [ctb],
Doug Fr [...truncated...]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between infer versions 1.0.4 dated 2022-12-01 and 1.0.5 dated 2023-09-05
infer-1.0.4/infer/man/figures/infer.png |only infer-1.0.5/infer/DESCRIPTION | 119 infer-1.0.5/infer/MD5 | 188 infer-1.0.5/infer/NAMESPACE | 6 infer-1.0.5/infer/NEWS.md | 19 infer-1.0.5/infer/R/assume.R | 209 infer-1.0.5/infer/R/calculate.R | 56 infer-1.0.5/infer/R/deprecated.R | 2 infer-1.0.5/infer/R/fit.R | 123 infer-1.0.5/infer/R/generate.R | 115 infer-1.0.5/infer/R/get_confidence_interval.R | 141 infer-1.0.5/infer/R/get_p_value.R | 132 infer-1.0.5/infer/R/gss.R | 16 infer-1.0.5/infer/R/hypothesize.R | 135 infer-1.0.5/infer/R/observe.R | 42 infer-1.0.5/infer/R/pipe.R | 2 infer-1.0.5/infer/R/print_methods.R | 16 infer-1.0.5/infer/R/rep_sample_n.R | 68 infer-1.0.5/infer/R/set_params.R | 46 infer-1.0.5/infer/R/shade_confidence_interval.R | 85 infer-1.0.5/infer/R/shade_p_value.R | 145 infer-1.0.5/infer/R/specify.R | 124 infer-1.0.5/infer/R/utils.R | 175 infer-1.0.5/infer/R/visualize.R | 347 infer-1.0.5/infer/R/wrappers.R | 93 infer-1.0.5/infer/README.md | 12 infer-1.0.5/infer/build/partial.rdb |binary infer-1.0.5/infer/build/vignette.rds |binary infer-1.0.5/infer/inst/doc/anova.html | 84 infer-1.0.5/infer/inst/doc/chi_squared.html | 176 infer-1.0.5/infer/inst/doc/infer.html | 290 infer-1.0.5/infer/inst/doc/observed_stat_examples.R | 36 infer-1.0.5/infer/inst/doc/observed_stat_examples.Rmd | 64 infer-1.0.5/infer/inst/doc/observed_stat_examples.html | 3899 ++++++++-- infer-1.0.5/infer/inst/doc/paired.R |only infer-1.0.5/infer/inst/doc/paired.Rmd |only infer-1.0.5/infer/inst/doc/paired.html |only infer-1.0.5/infer/inst/doc/t_test.Rmd | 7 infer-1.0.5/infer/inst/doc/t_test.html | 169 infer-1.0.5/infer/man/assume.Rd | 25 infer-1.0.5/infer/man/calculate.Rd | 4 infer-1.0.5/infer/man/figures/logo.png |only infer-1.0.5/infer/man/fit.infer.Rd | 10 infer-1.0.5/infer/man/generate.Rd | 4 infer-1.0.5/infer/man/get_confidence_interval.Rd | 16 infer-1.0.5/infer/man/get_p_value.Rd | 14 infer-1.0.5/infer/man/hypothesize.Rd | 19 infer-1.0.5/infer/man/infer.Rd | 3 infer-1.0.5/infer/man/observe.Rd | 19 infer-1.0.5/infer/man/prop_test.Rd | 16 infer-1.0.5/infer/man/rep_sample_n.Rd | 8 infer-1.0.5/infer/man/shade_confidence_interval.Rd | 32 infer-1.0.5/infer/man/shade_p_value.Rd | 22 infer-1.0.5/infer/man/specify.Rd | 2 infer-1.0.5/infer/man/visualize.Rd | 26 infer-1.0.5/infer/tests/testthat.R | 10 infer-1.0.5/infer/tests/testthat/_snaps/aliases.md |only infer-1.0.5/infer/tests/testthat/_snaps/assume.md |only infer-1.0.5/infer/tests/testthat/_snaps/calculate.md |only infer-1.0.5/infer/tests/testthat/_snaps/fit.md |only infer-1.0.5/infer/tests/testthat/_snaps/generate.md |only infer-1.0.5/infer/tests/testthat/_snaps/get_confidence_interval.md |only infer-1.0.5/infer/tests/testthat/_snaps/get_p_value.md |only infer-1.0.5/infer/tests/testthat/_snaps/hypothesize.md |only infer-1.0.5/infer/tests/testthat/_snaps/observe.md |only infer-1.0.5/infer/tests/testthat/_snaps/rep_sample_n.md |only infer-1.0.5/infer/tests/testthat/_snaps/shade_confidence_interval.md |only infer-1.0.5/infer/tests/testthat/_snaps/shade_p_value.md |only infer-1.0.5/infer/tests/testthat/_snaps/specify.md |only infer-1.0.5/infer/tests/testthat/_snaps/utils.md |only infer-1.0.5/infer/tests/testthat/_snaps/visualize.md |only infer-1.0.5/infer/tests/testthat/_snaps/visualize/ci-vis.svg | 69 infer-1.0.5/infer/tests/testthat/_snaps/visualize/method-both.svg | 69 infer-1.0.5/infer/tests/testthat/_snaps/visualize/vis-no-hypothesize-both.svg | 65 infer-1.0.5/infer/tests/testthat/_snaps/visualize/vis-theor-both-1.svg | 158 infer-1.0.5/infer/tests/testthat/_snaps/visualize/vis-theor-none-1.svg | 54 infer-1.0.5/infer/tests/testthat/_snaps/visualize/viz-assume-t-both.svg | 54 infer-1.0.5/infer/tests/testthat/_snaps/visualize/viz-assume-t-sim.svg | 54 infer-1.0.5/infer/tests/testthat/_snaps/visualize/viz-fit-bare.svg | 9 infer-1.0.5/infer/tests/testthat/_snaps/visualize/viz-fit-conf-int.svg | 9 infer-1.0.5/infer/tests/testthat/_snaps/visualize/viz-fit-no-h0.svg | 9 infer-1.0.5/infer/tests/testthat/_snaps/visualize/viz-fit-p-val-both.svg | 9 infer-1.0.5/infer/tests/testthat/_snaps/visualize/viz-fit-p-val-left.svg | 9 infer-1.0.5/infer/tests/testthat/_snaps/visualize/viz-fit-p-val-right.svg | 9 infer-1.0.5/infer/tests/testthat/_snaps/wrappers.md |only infer-1.0.5/infer/tests/testthat/helper-data.R | 4 infer-1.0.5/infer/tests/testthat/test-aliases.R | 17 infer-1.0.5/infer/tests/testthat/test-assume.R | 214 infer-1.0.5/infer/tests/testthat/test-calculate.R | 243 infer-1.0.5/infer/tests/testthat/test-fit.R | 56 infer-1.0.5/infer/tests/testthat/test-generate.R | 223 infer-1.0.5/infer/tests/testthat/test-get_confidence_interval.R | 357 infer-1.0.5/infer/tests/testthat/test-get_p_value.R | 290 infer-1.0.5/infer/tests/testthat/test-hypothesize.R | 124 infer-1.0.5/infer/tests/testthat/test-observe.R | 110 infer-1.0.5/infer/tests/testthat/test-print.R | 2 infer-1.0.5/infer/tests/testthat/test-rep_sample_n.R | 130 infer-1.0.5/infer/tests/testthat/test-shade_confidence_interval.R | 65 infer-1.0.5/infer/tests/testthat/test-shade_p_value.R | 72 infer-1.0.5/infer/tests/testthat/test-specify.R | 93 infer-1.0.5/infer/tests/testthat/test-utils.R | 69 infer-1.0.5/infer/tests/testthat/test-visualize.R | 408 - infer-1.0.5/infer/tests/testthat/test-wrappers.R | 262 infer-1.0.5/infer/vignettes/observed_stat_examples.Rmd | 64 infer-1.0.5/infer/vignettes/paired.Rmd |only infer-1.0.5/infer/vignettes/t_test.Rmd | 7 106 files changed, 7086 insertions(+), 3672 deletions(-)
Title: Temporal Sensory Data Analysis
Description: Analysis and visualization of data from temporal sensory methods, including for temporal check-all-that-apply (TCATA) and temporal dominance of sensations (TDS). Methods are mainly from manuscripts by Castura, J.C., Antúnez, L., Giménez, A., and Ares, G. (2016) <doi:10.1016/j.foodqual.2015.06.017>, Castura, Baker, and Ross (2016) <doi:10.1016/j.foodqual.2016.06.011>, and Pineau et al. (2009) <doi:10.1016/j.foodqual.2009.04.005>.
Author: J.C. Castura [aut, cre, ctb]
Maintainer: J.C. Castura <jcastura@compusense.com>
Diff between tempR versions 0.9.9.20 dated 2022-02-18 and 0.9.9.23 dated 2023-09-05
DESCRIPTION | 14 ++++---- MD5 | 18 ++++++----- R/tcata.R | 84 ++++++++++++++++++++++++++++++++++++++++++++++++++++- R/tds.R | 1 R/tempR-internal.R |only R/tempr.R | 2 - build/partial.rdb |binary inst/CITATION | 16 ---------- man/draw.hcross.Rd |only man/std.time.Rd | 2 + man/tempR.Rd | 1 11 files changed, 106 insertions(+), 32 deletions(-)
Title: Explainable Machine Learning in Survival Analysis
Description: Survival analysis models are commonly used in medicine and other areas. Many of them
are too complex to be interpreted by human. Exploration and explanation is needed, but
standard methods do not give a broad enough picture. 'survex' provides easy-to-apply
methods for explaining survival models, both complex black-boxes and simpler statistical models.
They include methods specific to survival analysis such as SurvSHAP(t) introduced in Krzyzinski et al., (2023)
<doi:10.1016/j.knosys.2022.110234>, SurvLIME described in Kovalev et al., (2020) <doi:10.1016/j.knosys.2020.106164> as well as
extensions of existing ones described in Biecek et al., (2021) <doi:10.1201/9780429027192>.
Author: Mikolaj Spytek [aut, cre] ,
Mateusz Krzyzinski [aut] ,
Sophie Langbein [aut],
Hubert Baniecki [aut] ,
Przemyslaw Biecek [aut]
Maintainer: Mikolaj Spytek <mikolajspytek@gmail.com>
Diff between survex versions 1.0.0 dated 2023-03-20 and 1.1.3 dated 2023-09-05
survex-1.0.0/survex/R/plot_feature_importance.R |only survex-1.0.0/survex/R/surv_aggregate_profiles.R |only survex-1.0.0/survex/build |only survex-1.0.0/survex/inst/doc |only survex-1.0.0/survex/man/plot.feature_importance_explainer.Rd |only survex-1.0.0/survex/man/plot.surv_ceteris_paribus.Rd |only survex-1.0.0/survex/man/surv_aggregate_profiles.Rd |only survex-1.0.0/survex/tests |only survex-1.0.0/survex/vignettes |only survex-1.1.3/survex/DESCRIPTION | 22 survex-1.1.3/survex/MD5 | 141 - survex-1.1.3/survex/NAMESPACE | 25 survex-1.1.3/survex/NEWS.md | 114 - survex-1.1.3/survex/R/explain.R | 1133 ++++++----- survex-1.1.3/survex/R/metrics.R | 74 survex-1.1.3/survex/R/misc_set_theme_survex.R | 26 survex-1.1.3/survex/R/model_diagnostics.R |only survex-1.1.3/survex/R/model_info.R | 43 survex-1.1.3/survex/R/model_parts.R | 68 survex-1.1.3/survex/R/model_performance.R | 174 - survex-1.1.3/survex/R/model_profile.R | 139 - survex-1.1.3/survex/R/model_profile_2d.R |only survex-1.1.3/survex/R/model_survshap.R |only survex-1.1.3/survex/R/plot_model_diagnostics_survival.R |only survex-1.1.3/survex/R/plot_model_parts_survival.R | 75 survex-1.1.3/survex/R/plot_model_profile_2d.R |only survex-1.1.3/survex/R/plot_model_profile_survival.R | 709 +++++- survex-1.1.3/survex/R/plot_predict_profile_survival.R | 302 ++ survex-1.1.3/survex/R/plot_surv_ceteris_paribus.R | 346 +-- survex-1.1.3/survex/R/plot_surv_feature_importance.R | 33 survex-1.1.3/survex/R/plot_surv_lime.R | 62 survex-1.1.3/survex/R/plot_surv_model_performance.R | 342 +-- survex-1.1.3/survex/R/plot_surv_model_performance_rocs.R | 41 survex-1.1.3/survex/R/plot_surv_shap.R | 534 +++++ survex-1.1.3/survex/R/predict_parts.R | 36 survex-1.1.3/survex/R/predict_profile.R | 62 survex-1.1.3/survex/R/predict_surv_explainer.R | 20 survex-1.1.3/survex/R/print.R | 28 survex-1.1.3/survex/R/surv_ceteris_paribus.R | 178 - survex-1.1.3/survex/R/surv_feature_importance.R | 55 survex-1.1.3/survex/R/surv_integrated_feature_importance.R | 16 survex-1.1.3/survex/R/surv_lime.R | 59 survex-1.1.3/survex/R/surv_model_performance.R | 47 survex-1.1.3/survex/R/surv_model_profiles.R |only survex-1.1.3/survex/R/surv_shap.R | 423 ++-- survex-1.1.3/survex/R/utils.R | 516 +++-- survex-1.1.3/survex/README.md | 43 survex-1.1.3/survex/inst/CITATION |only survex-1.1.3/survex/man/c_index.Rd | 3 survex-1.1.3/survex/man/explain_survival.Rd | 48 survex-1.1.3/survex/man/extract_predict_survshap.Rd |only survex-1.1.3/survex/man/loss_one_minus_c_index.Rd | 3 survex-1.1.3/survex/man/model_diagnostics.surv_explainer.Rd |only survex-1.1.3/survex/man/model_performance.surv_explainer.Rd | 24 survex-1.1.3/survex/man/model_profile.surv_explainer.Rd | 26 survex-1.1.3/survex/man/model_profile_2d.surv_explainer.Rd |only survex-1.1.3/survex/man/model_survshap.surv_explainer.Rd |only survex-1.1.3/survex/man/plot.aggregated_surv_shap.Rd |only survex-1.1.3/survex/man/plot.model_diagnostics_survival.Rd |only survex-1.1.3/survex/man/plot.model_parts_survival.Rd | 3 survex-1.1.3/survex/man/plot.model_profile_2d_survival.Rd |only survex-1.1.3/survex/man/plot.model_profile_survival.Rd | 38 survex-1.1.3/survex/man/plot.predict_profile_survival.Rd | 74 survex-1.1.3/survex/man/plot.surv_model_performance.Rd | 3 survex-1.1.3/survex/man/plot.surv_model_performance_rocs.Rd | 2 survex-1.1.3/survex/man/plot.surv_shap.Rd | 2 survex-1.1.3/survex/man/predict.surv_explainer.Rd | 17 survex-1.1.3/survex/man/predict_parts.surv_explainer.Rd | 7 survex-1.1.3/survex/man/predict_profile.surv_explainer.Rd | 16 survex-1.1.3/survex/man/risk_from_chf.Rd | 15 survex-1.1.3/survex/man/surv_ceteris_paribus.Rd | 2 survex-1.1.3/survex/man/surv_model_info.Rd | 18 survex-1.1.3/survex/man/surv_shap.Rd | 12 survex-1.1.3/survex/man/transform_to_stepfunction.Rd | 10 74 files changed, 4020 insertions(+), 2189 deletions(-)
Title: Easily Create, View and Use Monochrome Colour Palettes
Description: Generate a monochrome palette from a starting colour
for a specified number of colours. The package can also be used to display
colour palettes in the plot window, with or without hex codes and colour labels.
Author: Cara Thompson [aut, cre]
Maintainer: Cara Thompson <packages@cararthompson.com>
Diff between monochromeR versions 0.1.4 dated 2022-10-04 and 0.2.0 dated 2023-09-05
DESCRIPTION | 12 ++++---- MD5 | 13 +++++---- NAMESPACE | 1 R/helper_functions.R | 18 ++++++++++++ R/view_palette.R | 11 ++++++- README.md | 71 ++++++++++++++++++++++++++++++++++++--------------- man/hex_to_rgb.Rd |only man/view_palette.Rd | 1 8 files changed, 93 insertions(+), 34 deletions(-)
Title: Solves Minimum Cost Bipartite Matching Problems
Description: Header library and R functions to solve minimum cost bipartite matching problem
using Huhn-Munkres algorithm (Hungarian algorithm; <https://en.wikipedia.org/wiki/Hungarian_algorithm>;
Kuhn (1955) <doi:10.1002/nav.3800020109>).
This is a repackaging of code written by Cong Ma in the GitHub repo <https://github.com/mcximing/hungarian-algorithm-cpp>.
Author: Justin Silverman [aut, cre],
Cong Ma [ctb, cph],
Markus Buehren [ctb, cph]
Maintainer: Justin Silverman <JustinSilverman@psu.edu>
Diff between RcppHungarian versions 0.2 dated 2022-01-26 and 0.3 dated 2023-09-05
DESCRIPTION | 10 MD5 | 20 NEWS.md | 4 R/RcppHungarian.R | 1 README.md | 1 build/vignette.rds |binary inst/doc/Introduction-to-RcppHungarian.html | 631 +++++++++++++++++++--------- man/RcppHungarian_package.Rd | 2 src/Makevars | 2 src/Makevars.win | 2 src/RcppExports.cpp | 5 11 files changed, 476 insertions(+), 202 deletions(-)
Title: Plot Hidden Markov Models
Description: Hidden Markov Models are useful for modeling
sequential data. This package provides several functions
implemented in C++ for explaining the algorithms used for
Hidden Markov Models (forward, backward, decoding,
learning).
Author: Toby Hocking [aut, cre]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between plotHMM versions 2022.1.25 dated 2022-01-27 and 2023.8.28 dated 2023-09-05
DESCRIPTION | 6 MD5 | 62 +-- NAMESPACE | 6 NEWS | 52 +-- R/RcppExports.R | 54 +-- R/eln.R | 44 +- build/vignette.rds |binary inst/doc/compare_depmixS4.R | 157 +++++---- inst/doc/compare_depmixS4.Rmd | 251 ++++++++------- inst/doc/compare_depmixS4.html | 614 +++++++++++++++++---------------------- inst/doc/multiple_sequences.R | 156 ++++----- inst/doc/multiple_sequences.Rmd | 228 +++++++------- inst/doc/multiple_sequences.html | 588 ++++++++++++++++--------------------- man/backward_interface.Rd | 78 ++-- man/buggy.5states.Rd | 28 - man/buggy.data.Rd | 28 - man/forward_interface.Rd | 90 ++--- man/multiply_interface.Rd | 84 ++--- man/pairwise_interface.Rd | 92 ++--- man/transition_interface.Rd | 98 +++--- man/viterbi_interface.Rd | 96 +++--- src/backward.cpp | 2 src/eln.cpp | 2 src/forward.cpp | 2 src/multiply.cpp | 2 src/pairwise.cpp | 2 src/transition.cpp | 2 src/viterbi.cpp | 2 tests/testthat.R | 4 tests/testthat/test-CRAN.R | 300 +++++++++---------- vignettes/compare_depmixS4.Rmd | 251 ++++++++------- vignettes/multiple_sequences.Rmd | 228 +++++++------- 32 files changed, 1764 insertions(+), 1845 deletions(-)
Title: Summarizing OTU Table Regarding the Composition, Abundance and
Beta Diversity of Abundant and Rare Biospheres
Description: Summarizes the taxonomic composition, diversity contribution of the rare and abundant community by using OTU (operational taxonomic unit) table which was generated by analyzing pipeline of 'QIIME' or 'mothur'. The rare biosphere in this package is subset by the relative abundance threshold (for details about rare biosphere please see Lynch and Neufeld (2015) <doi:10.1038/nrmicro3400>).
Author: Sizhong Yang
Maintainer: Sizhong Yang <yanglzu@163.com>
Diff between otuSummary versions 0.1.1 dated 2020-03-31 and 0.1.2 dated 2023-09-05
otuSummary-0.1.1/otuSummary/R/cCCA.R |only otuSummary-0.1.1/otuSummary/R/cRDA.R |only otuSummary-0.1.1/otuSummary/R/chao2.R |only otuSummary-0.1.1/otuSummary/R/colChoose.R |only otuSummary-0.1.1/otuSummary/R/getpropX.R |only otuSummary-0.1.1/otuSummary/R/getpropY.R |only otuSummary-0.1.1/otuSummary/R/gini.R |only otuSummary-0.1.1/otuSummary/R/ncolegend.R |only otuSummary-0.1.1/otuSummary/R/nmdsFUN.R |only otuSummary-0.1.1/otuSummary/R/ordination.R |only otuSummary-0.1.1/otuSummary/R/pchChoose.R |only otuSummary-0.1.1/otuSummary/R/uCCA.R |only otuSummary-0.1.1/otuSummary/R/uRDA.R |only otuSummary-0.1.1/otuSummary/R/yinterspace.R |only otuSummary-0.1.1/otuSummary/man/ordination.Rd |only otuSummary-0.1.2/otuSummary/DESCRIPTION | 11 - otuSummary-0.1.2/otuSummary/MD5 | 54 ++++----- otuSummary-0.1.2/otuSummary/NAMESPACE | 47 ++++++- otuSummary-0.1.2/otuSummary/R/alphaDiversity.R | 33 ++--- otuSummary-0.1.2/otuSummary/R/bplot.R |only otuSummary-0.1.2/otuSummary/R/calc_bc.R |only otuSummary-0.1.2/otuSummary/R/calc_chao1.R |only otuSummary-0.1.2/otuSummary/R/calc_chao2.R |only otuSummary-0.1.2/otuSummary/R/calc_shannon.R |only otuSummary-0.1.2/otuSummary/R/calc_simpson.R |only otuSummary-0.1.2/otuSummary/R/contrib.R | 7 - otuSummary-0.1.2/otuSummary/R/fillTax.R |only otuSummary-0.1.2/otuSummary/R/fillTax2.R |only otuSummary-0.1.2/otuSummary/R/otuCollap.R | 42 +++---- otuSummary-0.1.2/otuSummary/R/otuReport.R | 2 otuSummary-0.1.2/otuSummary/R/pbray.R | 23 +-- otuSummary-0.1.2/otuSummary/R/slimTax.R |only otuSummary-0.1.2/otuSummary/R/subOTU.R | 4 otuSummary-0.1.2/otuSummary/README.md |only otuSummary-0.1.2/otuSummary/man/alphaDiversity.Rd | 9 - otuSummary-0.1.2/otuSummary/man/bplot.Rd |only otuSummary-0.1.2/otuSummary/man/calc_bc.Rd |only otuSummary-0.1.2/otuSummary/man/fillTax.Rd |only otuSummary-0.1.2/otuSummary/man/fillTax2.Rd |only otuSummary-0.1.2/otuSummary/man/matrixConvert.Rd | 6 - otuSummary-0.1.2/otuSummary/man/otuCollap.Rd | 130 +++++++++++----------- otuSummary-0.1.2/otuSummary/man/otuReport.Rd | 8 + otuSummary-0.1.2/otuSummary/man/slimTax.Rd |only 43 files changed, 194 insertions(+), 182 deletions(-)
Title: Simulating Survival Data from Change-Point Hazard Distributions
Description: Simulates time-to-event data
with type I right censoring using two methods: the inverse CDF
method and our proposed memoryless method. The latter method
takes advantage of the memoryless property of survival and
simulates a separate distribution between change-points. We
include two parametric distributions: exponential and Weibull.
Inverse CDF method draws on the work of Rainer Walke (2010),
<https://www.demogr.mpg.de/papers/technicalreports/tr-2010-003.pdf>.
Author: Camille Hochheimer [aut, cre]
Maintainer: Camille Hochheimer <dochoch19@gmail.com>
Diff between cpsurvsim versions 1.2.1 dated 2022-01-13 and 1.2.2 dated 2023-09-05
DESCRIPTION | 10 - MD5 | 24 +-- NAMESPACE | 2 R/cpsurvsim.R | 1 R/expfns.R | 2 build/vignette.rds |binary inst/CITATION | 12 - inst/doc/cpsurvsim-vignette.html | 305 +++++++++++++++++++++++++++++++++++---- man/cpsurvsim.Rd | 1 man/exp_cdfsim.Rd | 22 ++ man/exp_memsim.Rd | 23 ++ man/weib_cdfsim.Rd | 27 +++ man/weib_memsim.Rd | 27 +++ 13 files changed, 407 insertions(+), 49 deletions(-)
Title: Create Representative Records After Entity Resolution
Description: An implementation of Kaplan, Betancourt, Steorts (2022) <doi:10.1080/00031305.2022.2041482> that creates representative records for use in downstream tasks after entity resolution is performed. Multiple methods for creating the representative records (data sets) are provided.
Author: Andee Kaplan [aut, cre],
Brenda Betancourt [aut],
Rebecca C. Steorts [aut]
Maintainer: Andee Kaplan <andee.kaplan@colostate.edu>
Diff between representr versions 0.1.4 dated 2022-10-18 and 0.1.5 dated 2023-09-05
DESCRIPTION | 8 - MD5 | 8 - NEWS.md | 4 R/representr.R | 2 inst/doc/representr.html | 211 +++++++++++++++++++++++------------------------ 5 files changed, 118 insertions(+), 115 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects and adjusted predictions from statistical
models and returns the result as tidy data frames. These data frames are
ready to use with the 'ggplot2'-package. Effects and predictions can be
calculated for many different models. Interaction terms, splines and
polynomial terms are also supported. The main functions are ggpredict(),
ggemmeans() and ggeffect(). There is a generic plot()-method to plot the
results using 'ggplot2'.
Author: Daniel Luedecke [aut, cre] ,
Frederik Aust [ctb] ,
Sam Crawley [ctb] ,
Mattan S. Ben-Shachar [ctb]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between ggeffects versions 1.3.0 dated 2023-08-21 and 1.3.1 dated 2023-09-05
DESCRIPTION | 6 MD5 | 53 +- NAMESPACE | 4 NEWS.md | 25 + R/ggeffect.R | 6 R/ggemmeans.R | 1 R/hypothesis_test.R | 12 R/johnson_neyman.R |only R/plot.R | 11 R/post_processing_labels.R | 1 R/utils.R | 15 R/utils_get_data_grid.R | 8 R/utils_is_empty.R | 42 - R/utils_set_attr.R | 12 inst/doc/content.Rmd | 7 inst/doc/content.html | 17 man/hypothesis_test.Rd | 4 man/install_latest.Rd | 80 +-- man/johnson_neyman.Rd |only tests/testthat/_snaps/print_hypothesis_test.md | 622 ++++++++++++------------- tests/testthat/test-glm.R | 18 tests/testthat/test-glmmTMB.R | 25 - tests/testthat/test-johnson_neyman.R |only tests/testthat/test-linear-models.R | 9 tests/testthat/test-lmer.R | 36 + tests/testthat/test-nestedLogit.R | 16 tests/testthat/test-offset.R |only tests/testthat/test-print_hypothesis_test.R | 36 + tests/testthat/test-raw_data.R |only vignettes/content.Rmd | 7 30 files changed, 655 insertions(+), 418 deletions(-)
Title: Circular Statistics
Description: Circular Statistics, from "Topics in circular Statistics" (2001) S. Rao Jammalamadaka and A. SenGupta, World Scientific.
Author: Ulric Lund <ulund@calpoly.edu> [aut],
Claudio Agostinelli <claudio.agostinelli@unitn.it> [aut],
Hiroyoshi Arai <h_arai@aoni.waseda.jp> [ctb],
Alessando Gagliardi <gagliardi@stud.unive.it> [ctb],
Eduardo Garcia-Portugues <edgarcia@est-econ.uc3m.es> [c [...truncated...]
Maintainer: Eduardo Garcia-Portugues <edgarcia@est-econ.uc3m.es>
Diff between circular versions 0.4-95 dated 2022-04-26 and 0.5-0 dated 2023-09-05
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NAMESPACE | 2 +- R/axis.circular.R | 2 +- R/medianHL.circular.R | 2 +- R/medianHL.default.R | 2 +- R/onAttach.R | 6 +++--- README | 3 ++- inst/CITATION | 15 +++++++-------- inst/NEWS | 6 ++++++ man/lm.circular.Rd | 9 ++++++--- man/medianHL.circular.Rd | 4 ++-- man/rose.diag.Rd | 17 +++++++++++++++-- 13 files changed, 61 insertions(+), 39 deletions(-)
Title: Fast, Easy, and Visual Bayesian Inference
Description: Accelerate Bayesian analytics workflows in 'R' through interactive modelling,
visualization, and inference. Define probabilistic graphical models using directed
acyclic graphs (DAGs) as a unifying language for business stakeholders, statisticians,
and programmers. This package relies on interfacing with the 'numpyro' python package.
Author: Adam Fleischhacker [aut, cre, cph],
Daniela Dapena [ctb],
Rose Nguyen [ctb],
Jared Sharpe [ctb]
Maintainer: Adam Fleischhacker <ajf@udel.edu>
Diff between causact versions 0.5.2 dated 2023-08-19 and 0.5.3 dated 2023-09-05
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/probability_distributions.R | 2 +- R/utils.R | 6 +++--- README.md | 22 +++++++++++----------- man/figures/gretaPost-1.png |binary 7 files changed, 28 insertions(+), 24 deletions(-)
More information about pharmaversesdtm at CRAN
Permanent link
Title: Visualizing Collinearity Diagnostics
Description: Provides methods to calculate diagnostics for multicollinearity among predictors in a linear or
generalized linear model. It also provides methods to visualize those diagnostics following Friendly & Kwan (2009),
"Where’s Waldo: Visualizing Collinearity Diagnostics", <doi:10.1198/tast.2009.0012>.
These include better tabular presentation of collinearity diagnostics that highlight the important numbers,
a semi-graphic tableplot of the diagnostics to make warning and danger levels more salient,
and a "collinearity biplot" of the smallest dimensions of predictor space, where collinearity is most apparent.
Author: Michael Friendly [aut, cre]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between VisCollin versions 0.1.1 dated 2023-08-17 and 0.1.2 dated 2023-09-05
DESCRIPTION | 9 MD5 | 21 - NEWS.md | 6 R/cellgram.R | 247 +++++++++--------- R/tableplot.R | 449 ++++++++++++++++----------------- R/tableplot.colldiag.R | 243 ++++++++--------- README.md | 61 ++-- inst/CITATION |only inst/WORDLIST | 120 ++++---- man/figures/README-cars-corrgram-1.png |binary man/tableplot.Rd | 222 ++++++++-------- man/tableplot.colldiag.Rd | 155 +++++------ 12 files changed, 781 insertions(+), 752 deletions(-)
More information about KnockoffHybrid at CRAN
Permanent link
Title: Functions for Estimating Centrographic Statistics
Description: A collection of functions for computing centrographic
statistics (e.g., standard distance, standard deviation
ellipse, standard deviation box) for observations taken at
point locations. Separate plotting functions have been
developed for each measure. Users interested in writing results
to ESRI shapefiles can do so by using results from 'aspace'
functions as inputs to the convert.to.shapefile() and
write.shapefile() functions in the 'shapefiles' library. We intend to
provide 'terra' integration for geographic data in a future release.
The 'aspace' package was originally conceived to aid in the analysis of
spatial patterns of travel behaviour (see Buliung and Remmel 2008
<doi:10.1007/s10109-008-0063-7>).
Author: Tarmo K. Remmel [aut, cre] ,
Randy Bui [aut],
Ron N. Buliung [aut]
Maintainer: Tarmo K. Remmel <remmelt@yorku.ca>
Diff between aspace versions 4.0.1 dated 2023-08-29 and 4.1.0 dated 2023-09-05
aspace-4.0.1/aspace/R/CF.R |only aspace-4.0.1/aspace/R/CF2PTS.R |only aspace-4.0.1/aspace/R/mean_centre.R |only aspace-4.0.1/aspace/R/median_centre.R |only aspace-4.0.1/aspace/man/CF.Rd |only aspace-4.0.1/aspace/man/CF2PTS.Rd |only aspace-4.0.1/aspace/man/mean_centre.Rd |only aspace-4.0.1/aspace/man/median_centre.Rd |only aspace-4.1.0/aspace/DESCRIPTION | 8 ++--- aspace-4.1.0/aspace/MD5 | 46 ++++++++++++++++-------------- aspace-4.1.0/aspace/NAMESPACE | 2 - aspace-4.1.0/aspace/NEWS.md | 11 +++++++ aspace-4.1.0/aspace/R/calc_box.R | 11 +++---- aspace-4.1.0/aspace/R/calc_cf.R |only aspace-4.1.0/aspace/R/calc_cf2pts.R |only aspace-4.1.0/aspace/R/calc_cmd.R |only aspace-4.1.0/aspace/R/calc_mdc.R |only aspace-4.1.0/aspace/R/calc_mnc.R |only aspace-4.1.0/aspace/R/calc_sdd.R | 25 +++++++--------- aspace-4.1.0/aspace/R/calc_sde.R | 22 +++++++------- aspace-4.1.0/aspace/R/plot_centres.R |only aspace-4.1.0/aspace/man/aspace.package.Rd | 10 +++--- aspace-4.1.0/aspace/man/calc_box.Rd | 12 +++++-- aspace-4.1.0/aspace/man/calc_cf.Rd |only aspace-4.1.0/aspace/man/calc_cf2pts.Rd |only aspace-4.1.0/aspace/man/calc_cmd.Rd |only aspace-4.1.0/aspace/man/calc_mdc.Rd |only aspace-4.1.0/aspace/man/calc_mnc.Rd |only aspace-4.1.0/aspace/man/calc_sdd.Rd | 18 +++++++---- aspace-4.1.0/aspace/man/calc_sde.Rd | 17 +++++++---- aspace-4.1.0/aspace/man/plot_box.Rd | 2 - aspace-4.1.0/aspace/man/plot_centres.Rd |only aspace-4.1.0/aspace/man/plot_sdd.Rd | 2 - aspace-4.1.0/aspace/man/plot_sde.Rd | 2 - 34 files changed, 110 insertions(+), 78 deletions(-)
Title: Analyze, Process, Identify, and Share Raman and (FT)IR Spectra
Description: Raman and (FT)IR spectral analysis tool for plastic particles and
other environmental samples (Cowger et al. 2021,
<doi:10.1021/acs.analchem.1c00123>). With read_any(), Open Specy provides a
single function for reading individual, batch, or map spectral data files
like .asp, .csv, .jdx, .spc, .spa, .0, and .zip. process_spec() simplifies
processing spectra, including smoothing, baseline correction,
range restriction and flattening, intensity conversions, wavenumber
alignment, and min-max normalization. Spectra can be identified in batch
using an onboard reference library (Cowger et al. 2020,
<doi:10.1177/0003702820929064>) using match_spec(). A Shiny app is available
via run_app() or online at <https://openanalysis.org/openspecy/>.
Author: Win Cowger [cre, aut, dtc] ,
Zacharias Steinmetz [aut] ,
Nick Leong [aut] ,
Andrea Faltynkova [aut, dtc] ,
Andrew B Gray [ctb] ,
Hannah Hapich [ctb] ,
Jennifer Lynch [ctb, dtc] ,
Hannah De Frond [ctb, dtc] ,
Keenan Munno [ctb, dtc] ,
Chelsea Rochman [...truncated...]
Maintainer: Win Cowger <wincowger@gmail.com>
Diff between OpenSpecy versions 0.9.5 dated 2022-07-06 and 1.0.2 dated 2023-09-05
OpenSpecy-0.9.5/OpenSpecy/R/read_spec.R |only OpenSpecy-0.9.5/OpenSpecy/R/subtr_bg.R |only OpenSpecy-0.9.5/OpenSpecy/inst/extdata/ftir_ps_interior.1 |only OpenSpecy-0.9.5/OpenSpecy/inst/shiny |only OpenSpecy-0.9.5/OpenSpecy/man/read_spec.Rd |only OpenSpecy-0.9.5/OpenSpecy/man/subtr_bg.Rd |only OpenSpecy-0.9.5/OpenSpecy/tests/testthat/test-read_spec.R |only OpenSpecy-0.9.5/OpenSpecy/tests/testthat/test-subtr_bg.R |only OpenSpecy-0.9.5/OpenSpecy/vignettes/images |only OpenSpecy-1.0.2/OpenSpecy/DESCRIPTION | 85 OpenSpecy-1.0.2/OpenSpecy/MD5 | 204 OpenSpecy-1.0.2/OpenSpecy/NAMESPACE | 160 OpenSpecy-1.0.2/OpenSpecy/NEWS.md | 36 OpenSpecy-1.0.2/OpenSpecy/R/OpenSpecy-package.R | 10 OpenSpecy-1.0.2/OpenSpecy/R/adj_intens.R | 64 OpenSpecy-1.0.2/OpenSpecy/R/adj_range.R |only OpenSpecy-1.0.2/OpenSpecy/R/as_OpenSpecy.R |only OpenSpecy-1.0.2/OpenSpecy/R/conform_spec.R |only OpenSpecy-1.0.2/OpenSpecy/R/data_norm.R | 99 OpenSpecy-1.0.2/OpenSpecy/R/def_features.R |only OpenSpecy-1.0.2/OpenSpecy/R/gen_OpenSpecy.R |only OpenSpecy-1.0.2/OpenSpecy/R/human_ts.R | 5 OpenSpecy-1.0.2/OpenSpecy/R/interactive_plots.R |only OpenSpecy-1.0.2/OpenSpecy/R/io_spec.R |only OpenSpecy-1.0.2/OpenSpecy/R/make_rel.R |only OpenSpecy-1.0.2/OpenSpecy/R/manage_lib.R | 133 OpenSpecy-1.0.2/OpenSpecy/R/manage_spec.R |only OpenSpecy-1.0.2/OpenSpecy/R/match_spec.R | 394 - OpenSpecy-1.0.2/OpenSpecy/R/process_spec.R |only OpenSpecy-1.0.2/OpenSpecy/R/raman_hdpe.R | 26 OpenSpecy-1.0.2/OpenSpecy/R/read_envi.R |only OpenSpecy-1.0.2/OpenSpecy/R/read_ext.R |only OpenSpecy-1.0.2/OpenSpecy/R/read_multi.R |only OpenSpecy-1.0.2/OpenSpecy/R/read_opus.R |only OpenSpecy-1.0.2/OpenSpecy/R/read_opus_raw.R |only OpenSpecy-1.0.2/OpenSpecy/R/run_app.R | 45 OpenSpecy-1.0.2/OpenSpecy/R/share_spec.R | 198 OpenSpecy-1.0.2/OpenSpecy/R/sig_noise.R |only OpenSpecy-1.0.2/OpenSpecy/R/smooth_intens.R | 59 OpenSpecy-1.0.2/OpenSpecy/R/spec_res.R | 28 OpenSpecy-1.0.2/OpenSpecy/R/subtr_baseline.R |only OpenSpecy-1.0.2/OpenSpecy/R/test_lib.R | 13 OpenSpecy-1.0.2/OpenSpecy/README.md | 89 OpenSpecy-1.0.2/OpenSpecy/build/partial.rdb |binary OpenSpecy-1.0.2/OpenSpecy/build/vignette.rds |binary OpenSpecy-1.0.2/OpenSpecy/data/raman_hdpe.RData |binary OpenSpecy-1.0.2/OpenSpecy/data/test_lib.RData |binary OpenSpecy-1.0.2/OpenSpecy/inst/doc/sop.R | 403 - OpenSpecy-1.0.2/OpenSpecy/inst/doc/sop.Rmd | 1180 +-- OpenSpecy-1.0.2/OpenSpecy/inst/doc/sop.html | 3481 ++++++++-- OpenSpecy-1.0.2/OpenSpecy/inst/extdata/CA_tiny_map.zip |only OpenSpecy-1.0.2/OpenSpecy/inst/extdata/fitr_nitrocellulose.jdx | 1024 -- OpenSpecy-1.0.2/OpenSpecy/inst/extdata/raman_hdpe.csv | 2061 ++--- OpenSpecy-1.0.2/OpenSpecy/inst/extdata/raman_hdpe.json |only OpenSpecy-1.0.2/OpenSpecy/inst/extdata/raman_hdpe.rds |only OpenSpecy-1.0.2/OpenSpecy/inst/extdata/raman_hdpe.yml |only OpenSpecy-1.0.2/OpenSpecy/inst/extdata/testdata_zipped.zip |only OpenSpecy-1.0.2/OpenSpecy/man/OpenSpecy-package.Rd | 32 OpenSpecy-1.0.2/OpenSpecy/man/adj_intens.Rd | 35 OpenSpecy-1.0.2/OpenSpecy/man/adj_range.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/as_OpenSpecy.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/conform_spec.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/data_norm.Rd | 65 OpenSpecy-1.0.2/OpenSpecy/man/def_features.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/gen_OpenSpecy.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/human_ts.Rd | 2 OpenSpecy-1.0.2/OpenSpecy/man/interactive_plots.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/io_spec.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/make_rel.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/manage_lib.Rd | 61 OpenSpecy-1.0.2/OpenSpecy/man/manage_spec.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/match_spec.Rd | 187 OpenSpecy-1.0.2/OpenSpecy/man/process_spec.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/raman_hdpe.Rd | 26 OpenSpecy-1.0.2/OpenSpecy/man/read_envi.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/read_ext.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/read_multi.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/read_opus.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/read_opus_raw.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/run_app.Rd | 19 OpenSpecy-1.0.2/OpenSpecy/man/share_spec.Rd | 112 OpenSpecy-1.0.2/OpenSpecy/man/sig_noise.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/smooth_intens.Rd | 38 OpenSpecy-1.0.2/OpenSpecy/man/spec_res.Rd | 17 OpenSpecy-1.0.2/OpenSpecy/man/subtr_baseline.Rd |only OpenSpecy-1.0.2/OpenSpecy/man/test_lib.Rd | 13 OpenSpecy-1.0.2/OpenSpecy/tests/testthat.R | 3 OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-adj_intens.R | 35 OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-adj_range.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-as_OpenSpecy.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-conform_spec.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-data_norm.R | 17 OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-def_features.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-gen_OpenSpecy.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-interactive_plots.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-io_spec.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-make_rel.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-manage_lib.R | 69 OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-manage_spec.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-match_spec.R | 156 OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-process_spec.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-read_envi.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-read_ext.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-read_multi.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-read_opus.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-run_app.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-share_spec.R | 63 OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-sig_noise.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-smooth_intens.R | 26 OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-spec_res.R | 2 OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-subtr_baseline.R |only OpenSpecy-1.0.2/OpenSpecy/tests/testthat/test-workflows.R |only OpenSpecy-1.0.2/OpenSpecy/tests/validation/test-augmented.R | 12 OpenSpecy-1.0.2/OpenSpecy/vignettes/sop.Rmd | 1180 +-- 114 files changed, 6880 insertions(+), 5087 deletions(-)
Title: Bayesian Methods for Identifying the Most Harmful Medication
Errors
Description: Two distinct but related statistical approaches to the problem of identifying the combinations of medication error characteristics that are more likely to result in harm are implemented in this package: 1) a Bayesian hierarchical model with optimal Bayesian ranking on the log odds of harm, and 2) an empirical Bayes model that estimates the ratio of the observed count of harm to the count that would be expected if error characteristics and harm were independent. In addition, for the Bayesian hierarchical model, the package provides functions to assess the sensitivity of results to different specifications of the random effects distributions.
Author: Sergio Venturini, Jessica Myers
Maintainer: Sergio Venturini <sergio.venturini@unicatt.it>
Diff between mederrRank versions 0.0.8 dated 2015-07-07 and 0.1.0 dated 2023-09-05
DESCRIPTION | 12 ++++---- LICENSE |only MD5 | 65 +++++++++++++++++++++++--------------------- R/mederrRank.R | 39 +++++++++++++------------- README.md |only build |only man/EBGM.Rd | 2 - man/MEDMARX.Rd | 4 +- man/bayes.rank.Rd | 2 - man/bhm.constr.resamp.Rd | 2 - man/bhm.mcmc.Rd | 2 - man/bhm.resample.Rd | 2 - man/dmixnegbinom.Rd | 2 - man/dnegbinom.Rd | 2 - man/dst.Rd | 2 - man/llDiffD.Rd | 2 - man/llDiffT.Rd | 2 - man/logp.Rd | 2 - man/logunpost.Rd | 2 - man/mederrData-class.Rd | 2 - man/mederrFit-class.Rd | 2 - man/mederrRank-package.Rd | 24 ++++++---------- man/mederrResample-class.Rd | 2 - man/mixnegbinom.em.Rd | 2 - man/mixnegbinom.loglik.Rd | 2 - man/mixnegbinom.score.Rd | 2 - man/negbinom.em.Rd | 2 - man/negbinom.loglik.Rd | 2 - man/negbinom.score.Rd | 2 - man/p.value.Rd | 2 - man/plot-methods.Rd | 2 - man/post.rep.Rd | 2 - man/rmixnegbinom.Rd | 2 - man/simdata.Rd | 2 - man/summary-methods.Rd | 2 - 35 files changed, 98 insertions(+), 100 deletions(-)
Title: Test of Stationarity and Localized Autocovariance
Description: Provides test of second-order stationarity for time
series (for dyadic and arbitrary-n length data). Provides
localized autocovariance, with confidence intervals,
for locally stationary (nonstationary) time series.
See Nason, G P (2013) "A test for second-order stationarity and
approximate confidence intervals for localized autocovariance
for locally stationary time series." Journal of the Royal Statistical
Society, Series B, 75, 879-904. <doi:10.1111/rssb.12015>.
Author: Guy Nason [aut, cre]
Maintainer: Guy Nason <g.nason@imperial.ac.uk>
Diff between locits versions 1.7.6 dated 2022-11-07 and 1.7.7 dated 2023-09-05
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/partial.rdb |binary inst/CHANGES | 2 ++ inst/CITATION | 13 ++++++------- man/locits-package.Rd | 7 ------- 6 files changed, 17 insertions(+), 23 deletions(-)
Title: Visualization of a Correlation Matrix using 'ggplot2'
Description: The 'ggcorrplot' package can be used to visualize easily a
correlation matrix using 'ggplot2'. It provides a solution for
reordering the correlation matrix and displays the significance level
on the plot. It also includes a function for computing a matrix of
correlation p-values.
Author: Alboukadel Kassambara [aut, cre],
Indrajeet Patil [ctb]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between ggcorrplot versions 0.1.4 dated 2022-09-26 and 0.1.4.1 dated 2023-09-05
DESCRIPTION | 7 +++---- MD5 | 2 +- 2 files changed, 4 insertions(+), 5 deletions(-)
Title: Reconstruct Animal Paths from Solar Geolocation Loggers Data
Description: Spatio-temporal locations of an animal are computed
from annotated data with a hidden Markov model via particle
filter algorithm. The package is relatively robust to varying
degrees of shading.
The hidden Markov model is described in Movement Ecology (Rakhimberdiev et al., 2015) <doi:10.1186/s40462-015-0062-5>,
general package description is in the Methods in Ecology and Evolution (Rakhimberdiev et al., 2017) <doi:10.1111/2041-210X.12765>
and package accuracy assessed in the Journal of Avian Biology (Rakhimberdiev et al. 2016) <doi:10.1111/jav.00891>.
Author: Eldar Rakhimberdiev [aut, cre],
Anatoly Saveliev [aut],
Julia Karagicheva [aut],
Simeon Lisovski [ctb]
Maintainer: Eldar Rakhimberdiev <eldar.rakhimberdiev@uva.nl>
Diff between FLightR versions 0.5.2 dated 2022-02-15 and 0.5.3 dated 2023-09-05
DESCRIPTION | 12 +++--- MD5 | 20 +++++----- R/data_import.R | 5 +- R/data_preparation.R | 6 +-- R/run_particle_filter.R | 6 +-- R/spatial_likelihood_estimation.R | 4 +- README.md | 5 +- build/vignette.rds |binary inst/CITATION | 8 ++-- inst/doc/FLightR_with_black-tailed_godwit_vignette_from_MEE_2017.html | 20 +++++++--- tests/testthat/test_data_result_summary_and_plotting.R | 4 +- 11 files changed, 49 insertions(+), 41 deletions(-)
Title: Covariate-Adaptive Randomization for Clinical Trials
Description: Provides functions and command-line user interface to generate allocation sequence by covariate-adaptive randomization for clinical trials. The package currently supports six covariate-adaptive randomization procedures. Three hypothesis testing methods that are valid and robust under covariate-adaptive randomization are also available in the package to facilitate the inference for treatment effect under the included randomization procedures. Additionally, the package provides comprehensive and efficient tools to allow one to evaluate and compare the performance of randomization procedures and tests based on various criteria. See Ma W, Ye X, Tu F, and Hu F (2023) <doi: 10.18637/jss.v107.i02> for details.
Author: Fuyi Tu [aut],
Xiaoqing Ye [aut, cre],
Wei Ma [aut, ths],
Feifang Hu [aut, ths]
Maintainer: Xiaoqing Ye <ye_xiaoq@163.com>
Diff between carat versions 2.2.0 dated 2023-05-01 and 2.2.1 dated 2023-09-05
DESCRIPTION | 10 ++++----- MD5 | 53 +++++++++++++++++++++++++-------------------------- inst/CITATION |only inst/NEWS.Rd | 6 +++++ man/AdjBCD.Rd | 2 + man/AdjBCD.sim.Rd | 2 + man/AdjBCD.ui.Rd | 2 + man/DoptBCD.Rd | 2 + man/DoptBCD.sim.Rd | 2 + man/DoptBCD.ui.Rd | 2 + man/HuHuCAR.Rd | 2 + man/HuHuCAR.sim.Rd | 2 + man/HuHuCAR.ui.Rd | 2 + man/PocSimMIN.Rd | 2 + man/PocSimMIN.sim.Rd | 2 + man/PocSimMIN.ui.Rd | 2 + man/StrBCD.Rd | 2 + man/StrBCD.sim.Rd | 2 + man/StrBCD.ui.Rd | 2 + man/StrPBR.Rd | 2 + man/StrPBR.sim.Rd | 2 + man/StrPBR.ui.Rd | 2 + man/boot.test.Rd | 2 + man/carat-package.Rd | 4 ++- man/compRand.Rd | 2 + man/corr.test.Rd | 2 + man/evalRand.Rd | 2 + man/rand.test.Rd | 2 + 28 files changed, 87 insertions(+), 32 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-06 0.6
2023-05-08 0.5
2022-10-16 0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-28 1.1.0
2022-11-19 1.0.0
Title: Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io',
and 'RPubs'
Description: Programmatic deployment interface for 'RPubs',
'shinyapps.io', and 'Posit Connect'. Supported content types include R
Markdown documents, Shiny applications, Plumber APIs, plots, and
static web content.
Author: Aron Atkins [aut, cre],
Toph Allen [aut],
Hadley Wickham [aut],
Jonathan McPherson [aut],
JJ Allaire [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Aron Atkins <aron@posit.co>
Diff between rsconnect versions 1.0.2 dated 2023-08-17 and 1.1.0 dated 2023-09-05
DESCRIPTION | 6 - MD5 | 68 +++++++++------- NAMESPACE | 1 NEWS.md | 25 +++++ R/bundle.R | 36 +++++++- R/bundleFiles.R | 16 ++- R/bundlePackage.R | 4 R/bundlePackageRenv.R | 11 ++ R/configureApp.R | 20 +--- R/deployApp.R | 43 +++++++++- R/imports.R | 2 R/utils-cli.R | 4 R/writeManifest.R | 6 + man/deployApp.Rd | 33 +++++++ man/setProperty.Rd | 4 man/showMetrics.Rd | 2 man/showProperties.Rd | 14 ++- man/unsetProperty.Rd | 2 man/writeManifest.Rd | 29 ++++++ tests/manual/dependencies.Rmd | 89 +++++++++++++++----- tests/manual/deploySite.Rmd | 123 +++++++++++++++++++++++++---- tests/testthat/_snaps/bundlePackageRenv.md | 5 + tests/testthat/_snaps/deploymentTarget.md | 2 tests/testthat/packages |only tests/testthat/test-bundleFiles.R | 75 ++++++++++++++++- tests/testthat/test-bundlePackage.R | 11 ++ tests/testthat/test-bundlePackageRenv.R | 14 +++ tests/testthat/test-deployApp.R | 2 tests/testthat/test-deployDoc.R | 11 ++ tests/testthat/test-writeManifest.R | 23 +++++ 30 files changed, 563 insertions(+), 118 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-06 0.0.1
Title: Create Panels of Independent States
Description: Create panel data consisting of independent states from 1816 to
the present. The package includes the Gleditsch & Ward (G&W) and Correlates
of War (COW) lists of independent states, as well as helper functions for
working with state panel data and standardizing other data sources to
create country-year/month/etc. data.
Author: Andreas Beger [cre, aut]
Maintainer: Andreas Beger <adbeger@gmail.com>
Diff between states versions 0.3.1 dated 2021-04-14 and 0.3.2 dated 2023-09-05
DESCRIPTION | 8 MD5 | 30 +- NEWS.md | 13 + R/compare.R | 8 R/data-docs.R | 2 R/misc.R | 4 R/plot-missing.R | 4 R/state-panel.R | 3 R/states-package.R | 3 README.md | 28 +- build/vignette.rds |binary inst/doc/differences-gw-cow.html | 56 ++-- inst/doc/statelists.html | 498 +++++++++++++++------------------------ man/dot-warner.Rd | 1 man/polity.Rd | 2 man/states.Rd | 5 16 files changed, 292 insertions(+), 373 deletions(-)
Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines spatial data types and supports geometrical operations
on them. Data types include point patterns, windows (domains),
pixel images, line segment patterns, tessellations and hyperframes.
Capabilities include creation and manipulation of data
(using command line or graphical interaction),
plotting, geometrical operations (rotation, shift, rescale,
affine transformation), convex hull, discretisation and
pixellation, Dirichlet tessellation, Delaunay triangulation,
pairwise distances, nearest-neighbour distances,
distance transform, morphological operations
(erosion, dilation, closing, opening), quadrat counting,
geometrical measurement, geometrical covariance,
colour maps, calculus on spatial domains,
Gaussian blur, level sets of images, transects of images,
intersections between objects, minimum distance matching.
(Excludes spatial data on a network, which are supported by
the package 'spatstat.linnet'.)
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Tilman Davies [ctb],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Greg McSwiggan [ctb, cph],
Sebastian Meyer [ctb, cph],
Jens Oehlschlaegel [ctb, cph],
Suman Rakshit [ctb], [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.geom versions 3.2-4 dated 2023-07-20 and 3.2-5 dated 2023-09-05
DESCRIPTION | 8 +-- MD5 | 29 +++++------ NEWS | 31 ++++++++++++ R/distmap.R | 9 ++- R/quadratcount.R | 3 - R/unnormdensity.R | 5 + R/util.R | 118 +++++++++++++++++++++++++++------------------- inst/doc/packagesizes.txt | 1 man/distmap.owin.Rd | 7 ++ man/progressreport.Rd | 9 ++- src/distmapbin.c | 107 ++++++++--------------------------------- src/distmapbin.h |only src/init.c | 2 src/proto.h | 2 tests/testsGtoJ.R | 10 +++ tests/testsQ.R | 6 +- 16 files changed, 186 insertions(+), 161 deletions(-)
Title: Multiple Hypothesis Testing
Description: Seven different methods for multiple testing problems. The SGoF-type methods (see for example, Carvajal Rodríguez et al., 2009 <doi:10.1186/1471-2105-10-209>; de Uña Álvarez, 2012 <doi:10.1515/1544-6115.1812>; Castro Conde et al., 2015 <doi:10.1177/0962280215597580>) and the BH and BY false discovery rate controlling procedures.
Author: Irene Castro Conde and Jacobo de Una Alvarez
Maintainer: Irene Castro Conde <irene.castro@uvigo.es>
Diff between sgof versions 2.3.3 dated 2022-06-28 and 2.3.4 dated 2023-09-05
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/sgof-package.Rd | 10 +--------- 3 files changed, 7 insertions(+), 15 deletions(-)
Title: Ensemble Empirical Mode Decomposition (EEMD) and Its Complete
Variant (CEEMDAN)
Description: An R interface for libeemd (Luukko, Helske, Räsänen, 2016) <doi:10.1007/s00180-015-0603-9>,
a C library of highly efficient parallelizable functions for performing the ensemble empirical mode decomposition (EEMD),
its complete variant (CEEMDAN), the regular empirical mode decomposition (EMD), and bivariate EMD (BEMD).
Due to the possible portability issues CRAN version no longer supports OpenMP, you can install OpenMP-supported version
from GitHub: <https://github.com/helske/Rlibeemd/>.
Author: Jouni Helske [aut, cre] ,
Perttu Luukko [aut]
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between Rlibeemd versions 1.4.2 dated 2021-10-07 and 1.4.3 dated 2023-09-05
ChangeLog | 47 ++++++++++++++++-------------- DESCRIPTION | 9 ++--- MD5 | 16 +++++----- R/RcppExports.R | 54 +++++++++++++++++------------------ R/Rlibeemd-package.R | 2 - R/ecg.R | 78 +++++++++++++++++++++++++-------------------------- R/zzz.R | 28 +++++++++--------- configure | 2 - man/Rlibeemd.Rd | 1 9 files changed, 120 insertions(+), 117 deletions(-)
Title: A Dependency Management System for Projects and their R Package
Dependencies
Description: Manage the R packages your project depends on in an isolated,
portable, and reproducible way.
Author: Aron Atkins [aut, cre],
Toph Allen [aut],
Kevin Ushey [aut],
Jonathan McPherson [aut],
Joe Cheng [aut],
JJ Allaire [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Aron Atkins <aron@posit.co>
Diff between packrat versions 0.9.1 dated 2023-02-27 and 0.9.2 dated 2023-09-05
packrat-0.9.1/packrat/inst/resources/renv.R |only packrat-0.9.1/packrat/man/packrat.Rd |only packrat-0.9.1/packrat/tools |only packrat-0.9.2/packrat/DESCRIPTION | 10 - packrat-0.9.2/packrat/MD5 | 27 +-- packrat-0.9.2/packrat/R/dependencies.R | 2 packrat-0.9.2/packrat/R/install.R | 4 packrat-0.9.2/packrat/R/packrat.R | 10 - packrat-0.9.2/packrat/R/renv.R | 81 +++++++++- packrat-0.9.2/packrat/R/restore.R | 10 + packrat-0.9.2/packrat/R/zzz.R | 2 packrat-0.9.2/packrat/inst/resources/init-rprofile.R | 2 packrat-0.9.2/packrat/inst/resources/init.R | 2 packrat-0.9.2/packrat/inst/vendor |only packrat-0.9.2/packrat/man/packrat-package.Rd |only packrat-0.9.2/packrat/tests/testthat/packages/packrat/DESCRIPTION | 32 ++- packrat-0.9.2/packrat/tests/testthat/test-packrat.R | 26 +-- 17 files changed, 151 insertions(+), 57 deletions(-)
Title: Thematic Cartography
Description: Create and integrate thematic maps in your workflow. This package
helps to design various cartographic representations such as proportional
symbols, choropleth or typology maps. It also offers several functions to
display layout elements that improve the graphic presentation of maps
(e.g. scale bar, north arrow, title, labels). 'mapsf' maps 'sf' objects on
'base' graphics.
Author: Timothee Giraud [cre, aut] ,
Diego Hernangomez [ctb] ,
Hugues Pecout [ctb],
Ronan Ysebaert [ctb],
Ian Fellows [cph] ,
Jim Lemon [cph] ,
Florian Zenoni [cph]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between mapsf versions 0.7.0 dated 2023-07-06 and 0.7.1 dated 2023-09-05
mapsf-0.7.0/mapsf/vignettes/data-raw |only mapsf-0.7.1/mapsf/DESCRIPTION | 6 +++--- mapsf-0.7.1/mapsf/MD5 | 15 +++++++-------- mapsf-0.7.1/mapsf/NEWS.md | 7 +++++++ mapsf-0.7.1/mapsf/R/mf_map_utils.R | 1 + mapsf-0.7.1/mapsf/R/package.R | 2 +- mapsf-0.7.1/mapsf/README.md | 4 ++-- mapsf-0.7.1/mapsf/inst/doc/mapsf.html | 20 ++++++++++---------- mapsf-0.7.1/mapsf/man/mapsf.Rd | 23 +++++++++++++++++++++++ 9 files changed, 54 insertions(+), 24 deletions(-)
Title: Thermophysical Properties of Water and Steam
Description: Functions for Water and Steam Properties based on the
International Association for the Properties of Water (IAPWS) Formulation
1995 for the Thermodynamic Properties of Ordinary Water Substance for General and
Scientific Use and on the releases for viscosity, conductivity, surface tension and
melting pressure.
Author: Benedito Baptista [aut],
Shawn Way [cre]
Maintainer: Shawn Way <shawnway@yahoo.com>
Diff between IAPWS95 versions 1.2.2 dated 2023-07-11 and 1.2.3 dated 2023-09-05
DESCRIPTION | 6 MD5 | 8 NEWS.md | 5 build/vignette.rds |binary src/IAPWS9521D.f90 | 1197 ++++++++++++++++++++++++++--------------------------- 5 files changed, 611 insertions(+), 605 deletions(-)
Title: Iterative and Interactive Dashboards
Description: Create customized, web-based dashboards for data presentation, exploration and sharing. 'i2dash' integrates easily into existing data analysis pipelines and can organize scientific findings thematically across different pages and layouts.
Author: Arsenij Ustjanzew [aut, cre, cph]
,
Jens Preussner [aut, cph] ,
Mario Looso [aut, cph]
Maintainer: Arsenij Ustjanzew <arsenij.ustjanzew@gmail.com>
Diff between i2dash versions 0.2.3 dated 2021-03-29 and 0.2.4 dated 2023-09-05
i2dash-0.2.3/i2dash/man/i2dash.Rd |only i2dash-0.2.4/i2dash/DESCRIPTION | 8 i2dash-0.2.4/i2dash/MD5 | 32 +- i2dash-0.2.4/i2dash/NAMESPACE | 120 ++++---- i2dash-0.2.4/i2dash/R/components.R | 2 i2dash-0.2.4/i2dash/R/i2dash-pkg.R | 2 i2dash-0.2.4/i2dash/R/i2dashboard.R | 4 i2dash-0.2.4/i2dash/build/vignette.rds |binary i2dash-0.2.4/i2dash/inst/CITATION | 28 + i2dash-0.2.4/i2dash/inst/doc/i2dash-extension.Rmd | 2 i2dash-0.2.4/i2dash/inst/doc/i2dash-extension.html | 280 ++++++++++++++---- i2dash-0.2.4/i2dash/inst/doc/i2dash-intro.Rmd | 6 i2dash-0.2.4/i2dash/inst/doc/i2dash-intro.html | 311 ++++++++++++++------- i2dash-0.2.4/i2dash/man/i2dash-package.Rd |only i2dash-0.2.4/i2dash/man/i2dashboard-class.Rd | 4 i2dash-0.2.4/i2dash/man/i2dashboard-content.Rd | 2 i2dash-0.2.4/i2dash/vignettes/i2dash-extension.Rmd | 2 i2dash-0.2.4/i2dash/vignettes/i2dash-intro.Rmd | 6 18 files changed, 543 insertions(+), 266 deletions(-)
Title: Solvers for Initial Value Problems of Differential Equations
('ODE', 'DAE', 'DDE')
Description: Functions that solve initial value problems of a system
of first-order ordinary differential equations ('ODE'), of
partial differential equations ('PDE'), of differential
algebraic equations ('DAE'), and of delay differential
equations. The functions provide an interface to the FORTRAN
functions 'lsoda', 'lsodar', 'lsode', 'lsodes' of the 'ODEPACK'
collection, to the FORTRAN functions 'dvode', 'zvode' and 'daspk'
and a C-implementation of solvers of the 'Runge-Kutta' family with
fixed or variable time steps. The package contains routines
designed for solving 'ODEs' resulting from 1-D, 2-D and 3-D
partial differential equations ('PDE') that have been converted
to 'ODEs' by numerical differencing.
Author: Karline Soetaert [aut] ,
Thomas Petzoldt [aut, cre] ,
R. Woodrow Setzer [aut] ,
Peter N. Brown [ctb] ,
George D. Byrne [ctb] ,
Ernst Hairer [ctb] ,
Alan C. Hindmarsh [ctb] ,
Cleve Moler [ctb] ,
Linda R. Petzold [ctb] ,
Youcef Saad [ctb] ,
Clement W. [...truncated...]
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between deSolve versions 1.37 dated 2023-09-01 and 1.38 dated 2023-09-05
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- inst/doc/compiledCode.pdf |binary inst/doc/deSolve.pdf |binary src/brent.c | 1 + src/deSolve_utils.c | 1 + src/rk_util.c | 1 + src/rk_util.h | 1 + src/twoDmap.c | 1 + 9 files changed, 16 insertions(+), 11 deletions(-)
Title: Choose Univariate Class Intervals
Description: Selected commonly used methods for choosing univariate class intervals for mapping or other graphics purposes.
Author: Roger Bivand [aut, cre] ,
Bill Denney [ctb] ,
Richard Dunlap [ctb],
Diego Hernangomez [ctb] ,
Hisaji Ono [ctb],
Josiah Parry [ctb] ,
Matthieu Stigler [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between classInt versions 0.4-9 dated 2023-02-28 and 0.4-10 dated 2023-09-05
DESCRIPTION | 8 MD5 | 11 R/classInt.R | 40 ++ build/vignette.rds |binary inst/doc/headtailsR.html | 601 +++++++++++++++++++++++++++++++++----------- inst/tinytest/test_largeN.R |only man/classIntervals.Rd | 7 7 files changed, 495 insertions(+), 172 deletions(-)
Title: Download 'nflverse' Data
Description: A minimal package for downloading data from 'GitHub'
repositories of the 'nflverse' project.
Author: Tan Ho [aut, cre, cph] ,
Sebastian Carl [aut],
John Edwards [ctb],
Ben Baldwin [ctb],
Thomas Mock [ctb],
Lee Sharpe [ctb],
Pranav Rajaram [ctb]
Maintainer: Tan Ho <tan@tanho.ca>
Diff between nflreadr versions 1.3.2 dated 2023-01-06 and 1.4.0 dated 2023-09-05
DESCRIPTION | 8 MD5 | 197 ++++++++++++---------- NAMESPACE | 5 NEWS.md | 37 ++++ R/data.R | 8 R/from_url.R | 28 --- R/load_combine.R | 1 R/load_contracts.R | 1 R/load_depth_charts.R | 1 R/load_draft_picks.R | 1 R/load_espn_qbr.R | 1 R/load_ffverse.R | 1 R/load_ftn_charting.R |only R/load_injuries.R | 1 R/load_nextgen_stats.R | 1 R/load_officials.R | 1 R/load_participation.R | 9 - R/load_pbp.R | 1 R/load_pfr_advstats.R | 2 R/load_player_stats.R | 8 R/load_players.R | 1 R/load_rosters.R | 1 R/load_rosters_weekly.R | 1 R/load_schedules.R | 1 R/load_snap_counts.R | 1 R/load_teams.R | 3 R/load_trades.R | 1 R/utils.R | 42 +--- R/utils_cran.R |only R/utils_date.R | 6 R/utils_download_nflverse.R | 19 +- R/utils_gameid.R | 16 + R/utils_join_coalesce.R | 2 R/utils_name_cleaning.R | 28 +-- R/utils_nflverse_data_class.R |only R/utils_progressively.R | 2 R/utils_sitrep.R | 249 +++++++++++++++++++--------- R/zzz.R | 10 - README.md | 71 +++----- build/vignette.rds |binary data/dictionary_ftn_charting.rda |only data/dictionary_pbp.rda |binary data/dictionary_player_stats_def.rda |only inst/doc/dictionary_espn_qbr.html | 266 ++++-------------------------- inst/doc/dictionary_ff_opportunity.html | 266 ++++-------------------------- inst/doc/dictionary_ftn_charting.R |only inst/doc/dictionary_ftn_charting.Rmd |only inst/doc/dictionary_ftn_charting.html |only inst/doc/dictionary_pbp.html | 266 ++++-------------------------- inst/doc/dictionary_player_stats.html | 266 ++++-------------------------- inst/doc/dictionary_player_stats_def.R |only inst/doc/dictionary_player_stats_def.Rmd |only inst/doc/dictionary_player_stats_def.html |only inst/doc/dictionary_rosters.html | 266 ++++-------------------------- inst/doc/dictionary_schedules.html | 266 ++++-------------------------- inst/doc/exporting_nflreadr.html | 65 ++++--- man/clean_homeaway.Rd | 19 +- man/clean_player_names.Rd | 2 man/clean_team_abbrs.Rd | 1 man/csv_from_url.Rd | 1 man/dictionary_ftn_charting.Rd |only man/dictionary_player_stats_def.Rd |only man/dot-for_cran.Rd |only man/dot-sitrep_pkg_deps.Rd |only man/dot-sitrep_pkg_opts.Rd |only man/join_coalesce.Rd | 2 man/latest_season.Rd | 2 man/load_combine.Rd | 1 man/load_contracts.Rd | 1 man/load_depth_charts.Rd | 1 man/load_draft_picks.Rd | 1 man/load_espn_qbr.Rd | 1 man/load_ff_playerids.Rd | 1 man/load_from_url.Rd | 1 man/load_ftn_charting.Rd |only man/load_injuries.Rd | 1 man/load_nextgen_stats.Rd | 1 man/load_officials.Rd | 1 man/load_participation.Rd | 1 man/load_pbp.Rd | 1 man/load_pfr_advstats.Rd | 1 man/load_pfr_passing.Rd | 1 man/load_player_stats.Rd | 5 man/load_players.Rd | 1 man/load_rosters.Rd | 1 man/load_rosters_weekly.Rd | 1 man/load_schedules.Rd | 1 man/load_snap_counts.Rd | 1 man/load_teams.Rd | 1 man/load_trades.Rd | 1 man/nflverse_data-class.Rd | 8 man/nflverse_download.Rd | 3 man/nflverse_game_id.Rd | 1 man/nflverse_releases.Rd | 9 - man/nflverse_sitrep-class.Rd |only man/parquet_from_url.Rd | 1 man/progressively.Rd | 2 man/qs_from_url.Rd | 1 man/raw_from_url.Rd | 1 man/rds_from_url.Rd | 1 man/sitrep.Rd | 11 - tests/testthat/setup.R |only tests/testthat/test-ffverse.R | 4 tests/testthat/test-from_url.R | 21 +- tests/testthat/test-nflverse.R | 28 ++- tests/testthat/test-utils_join_coalesce.R | 17 + tests/testthat/test-utils_name_cleaning.R | 7 tests/testthat/test-utils_sitrep.R | 20 +- vignettes/dictionary_ftn_charting.Rmd |only vignettes/dictionary_player_stats_def.Rmd |only 110 files changed, 906 insertions(+), 1709 deletions(-)
Title: Data Sets from Montgomery, Peck and Vining
Description: Most of this package consists of data sets from the
textbook Introduction
to Linear Regression Analysis, by Montgomery, Peck
and Vining. All data sets from the 3rd edition are included
and many from the 6th edition are also included.
The package also contains some additional data sets and functions.
Author: W.J. Braun and S. MacQueen
Maintainer: W.J. Braun <john.braun@ubc.ca>
Diff between MPV versions 1.62 dated 2023-02-25 and 1.63 dated 2023-09-05
DESCRIPTION | 15 +++++++------ MD5 | 58 ++++++++++++++++++++++++++++++++++++++++++++++++----- data/p12.16.rda |only data/p2.17.rda |only data/p2.18.rda |only data/p5.12.rda |only data/p5.13.rda |only data/p5.21.rda |only data/p5.22.rda |only data/p5.23.rda |only data/p5.24.rda |only data/p7.13.rda |only data/p7.17.rda |only data/p7.18.rda |only data/p7.20.rda |only data/p8.16.rda |only data/table.b15.rda |only data/table.b16.rda |only data/table.b17.rda |only data/table.b18.rda |only data/table.b19.rda |only data/table.b20.rda |only data/table.b22.rda |only data/table.b23.rda |only data/table.b24.rda |only data/table.b25.rda |only man/cement.Rd | 3 +- man/p12.16.Rd |only man/p2.17.Rd |only man/p2.18.Rd |only man/p2.7.Rd | 1 man/p2.9.Rd | 6 +++-- man/p5.11.Rd | 9 +++++--- man/p5.12.Rd |only man/p5.13.Rd |only man/p5.21.Rd |only man/p5.22.Rd |only man/p5.23.Rd |only man/p5.24.Rd |only man/p7.13.Rd |only man/p7.17.Rd |only man/p7.18.Rd |only man/p7.20.Rd |only man/p8.16.Rd |only man/table.b15.Rd |only man/table.b16.Rd |only man/table.b17.Rd |only man/table.b18.Rd |only man/table.b19.Rd |only man/table.b20.Rd |only man/table.b22.Rd |only man/table.b23.Rd |only man/table.b24.Rd |only man/table.b25.Rd |only 54 files changed, 74 insertions(+), 18 deletions(-)
Title: Meta-Analyses for Simultaneously Estimating Individual Means
Description: Implement meta-analyses for simultaneously estimating individual means with shrinkage,
isotonic regression and pretests. Include our original implementation of the isotonic regression via the pool-adjacent-violators algorithm (PAVA) algorithm.
For the pretest estimator, the confidence interval for individual means are provided.
Methodologies were published in
Taketomi et al. (2021) <doi:10.3390/axioms10040267>, Taketomi et al. (2022) <doi:10.3390/a15010026>,
Taketomi et al. (2023-) (under review).
Author: Nanami Taketomi, Takeshi Emura
Maintainer: Nanami Taketomi <nnmamikrn@gmail.com>
Diff between meta.shrinkage versions 0.1.3 dated 2022-08-08 and 0.1.4 dated 2023-09-05
DESCRIPTION | 13 ++++++++----- MD5 | 10 +++++----- man/gpt.Rd | 17 ++++++++++++----- man/js.Rd | 9 ++++++--- man/rjs.Rd | 19 ++++++++++++------- man/rml.Rd | 16 ++++++++++------ 6 files changed, 53 insertions(+), 31 deletions(-)
More information about meta.shrinkage at CRAN
Permanent link
Title: Visualizing Hypothesis Tests in Multivariate Linear Models
Description: Provides HE plot and other functions for visualizing hypothesis
tests in multivariate linear models. HE plots represent sums-of-squares-and-products
matrices for linear hypotheses and for error using ellipses (in two
dimensions) and ellipsoids (in three dimensions). The related 'candisc' package
provides visualizations in a reduced-rank canonical discriminant space when
there are more than a few response variables.
Author: Michael Friendly [aut, cre] ,
John Fox [aut] ,
Georges Monette [aut],
Phil Chalmers [ctb],
Duncan Murdoch [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between heplots versions 1.4-2 dated 2022-10-19 and 1.6.0 dated 2023-09-05
heplots-1.4-2/heplots/R/utility.R |only heplots-1.4-2/heplots/man/figures/logo-old.png |only heplots-1.4-2/heplots/man/heplot-package.Rd |only heplots-1.6.0/heplots/DESCRIPTION | 35 heplots-1.6.0/heplots/MD5 | 313 ++- heplots-1.6.0/heplots/NAMESPACE | 203 +- heplots-1.6.0/heplots/NEWS.md | 20 heplots-1.6.0/heplots/R/Ellipsoid.R |only heplots-1.6.0/heplots/R/Mahalanobis.R | 32 heplots-1.6.0/heplots/R/arrow3d.R | 26 heplots-1.6.0/heplots/R/bartlettTests.R | 12 heplots-1.6.0/heplots/R/bbox3d.R |only heplots-1.6.0/heplots/R/boxM.R | 133 + heplots-1.6.0/heplots/R/coefplot.mlm.R | 84 heplots-1.6.0/heplots/R/colDevs.R | 42 heplots-1.6.0/heplots/R/covEllipses.R | 194 ++ heplots-1.6.0/heplots/R/cqplot.R | 152 + heplots-1.6.0/heplots/R/cross3d.R | 11 heplots-1.6.0/heplots/R/datasets.R |only heplots-1.6.0/heplots/R/ellipse3d.axes.R | 51 heplots-1.6.0/heplots/R/etasq.R | 76 heplots-1.6.0/heplots/R/glance.mlm.R | 7 heplots-1.6.0/heplots/R/gsorth.R | 77 heplots-1.6.0/heplots/R/heplot.R | 314 +++ 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Title: Encoding Coordinates into 'Google' Polylines
Description: Encodes simple feature ('sf') objects and coordinates, and decodes polylines
using the 'Google' polyline encoding algorithm (<https://developers.google.com/maps/documentation/utilities/polylinealgorithm>).
Author: David Cooley [aut, cre],
Paulo Barcelos [ctb] ,
Chris Muir [ctb]
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between googlePolylines versions 0.8.3 dated 2023-04-02 and 0.8.4 dated 2023-09-05
googlePolylines-0.8.3/googlePolylines/man/sfencode-package.Rd |only googlePolylines-0.8.4/googlePolylines/DESCRIPTION | 11 googlePolylines-0.8.4/googlePolylines/MD5 | 13 - googlePolylines-0.8.4/googlePolylines/build/vignette.rds |binary googlePolylines-0.8.4/googlePolylines/inst/doc/sfencode.html | 130 +++++----- googlePolylines-0.8.4/googlePolylines/src/Makevars | 2 googlePolylines-0.8.4/googlePolylines/src/Makevars.win | 2 googlePolylines-0.8.4/googlePolylines/src/wkt.cpp | 24 - 8 files changed, 90 insertions(+), 92 deletions(-)
More information about googlePolylines at CRAN
Permanent link
Title: Draw Gene Arrow Maps in 'ggplot2'
Description: A 'ggplot2' extension for drawing gene arrow maps.
Author: David Wilkins [aut, cre],
Zachary Kurtz [ctb]
Maintainer: David Wilkins <david@wilkox.org>
Diff between gggenes versions 0.5.0 dated 2023-03-28 and 0.5.1 dated 2023-09-05
gggenes-0.5.0/gggenes/R/gggenes.R |only gggenes-0.5.0/gggenes/man/gggenes.Rd |only gggenes-0.5.1/gggenes/DESCRIPTION | 6 ++--- gggenes-0.5.1/gggenes/MD5 | 14 ++++++------ gggenes-0.5.1/gggenes/NEWS.md | 7 ++++++ gggenes-0.5.1/gggenes/R/gggenes-package.R |only gggenes-0.5.1/gggenes/build/vignette.rds |binary gggenes-0.5.1/gggenes/inst/WORDLIST | 3 +- gggenes-0.5.1/gggenes/inst/doc/introduction-to-gggenes.html | 14 ++++++------ gggenes-0.5.1/gggenes/man/gggenes-package.Rd |only 10 files changed, 26 insertions(+), 18 deletions(-)
Title: Fit Text Inside a Box in 'ggplot2'
Description: A 'ggplot2' extension to fit text into a box by growing, shrinking or wrapping the text.
Author: David Wilkins [aut, cre],
Brady Johnston [ctb]
Maintainer: David Wilkins <david@wilkox.org>
Diff between ggfittext versions 0.10.0 dated 2023-04-04 and 0.10.1 dated 2023-09-05
ggfittext-0.10.0/ggfittext/R/ggfittext.R |only ggfittext-0.10.0/ggfittext/man/ggfittext.Rd |only ggfittext-0.10.1/ggfittext/DESCRIPTION | 6 ++-- ggfittext-0.10.1/ggfittext/MD5 | 14 +++++----- ggfittext-0.10.1/ggfittext/NEWS.md | 7 +++++ ggfittext-0.10.1/ggfittext/R/ggfittext-package.R |only ggfittext-0.10.1/ggfittext/build/vignette.rds |binary ggfittext-0.10.1/ggfittext/inst/WORDLIST | 3 +- ggfittext-0.10.1/ggfittext/inst/doc/introduction-to-ggfittext.html | 6 ++-- ggfittext-0.10.1/ggfittext/man/ggfittext-package.Rd |only 10 files changed, 22 insertions(+), 14 deletions(-)
Title: Coordinated Networks Detection on Social Media
Description: Detects a variety of coordinated actions on Twitter and outputs the network of coordinated users along with related information.
Author: Nicola Righetti [aut, cre] ,
Paul Balluff [aut]
Maintainer: Nicola Righetti <nicola.righetti@univie.ac.at>
Diff between CooRTweet versions 1.3 dated 2023-05-25 and 1.5.0 dated 2023-09-05
DESCRIPTION | 10 - MD5 | 36 +++-- NAMESPACE | 4 NEWS.md |only R/detect_coordinated_groups.R | 220 +++++++++++++++++++++++++++++++++-- R/generate_network.R | 3 R/group_stats.r | 3 R/preprocess_twitter.R | 1 R/reshape_tweets.r | 95 ++++++++++++++- R/user_stats.R | 17 +- README.md | 15 -- inst/doc/vignette.html | 112 ++++++++--------- man/detect_coordinated_groups.Rd | 2 man/detect_similar_text.Rd |only man/filter_min_repetition.Rd |only man/normalize_text.Rd |only man/remove_hashtags.Rd |only man/remove_loops.Rd |only man/reshape_tweets.Rd | 18 ++ tests/testthat.R | 5 tests/testthat/test-sample_data.R | 4 tests/testthat/test-simulated_data.R | 7 + 22 files changed, 441 insertions(+), 111 deletions(-)
Title: Programming with Big Data -- Interface to 'ZeroMQ'
Description: 'ZeroMQ' is a well-known library for high-performance
asynchronous messaging in scalable, distributed applications. This
package provides high level R wrapper functions to easily utilize
'ZeroMQ'. We mainly focus on interactive client/server programming
frameworks. For convenience, a minimal 'ZeroMQ' library (4.2.2)
is shipped with 'pbdZMQ', which can be used if no system installation
of 'ZeroMQ' is available. A few wrapper functions compatible with
'rzmq' are also provided.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Christian Heckendorf [aut] ,
George Ostrouchov [aut] ,
Whit Armstrong [ctb] ,
Brian Ripley [ctb] ,
R Core team [ctb] ,
Philipp A. [ctb] ,
Elliott Sales de Andrade [ctb] ,
Spencer Aiello [ctb] ,
Paul Andre [...truncated...]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdZMQ versions 0.3-9 dated 2023-01-21 and 0.3-10 dated 2023-09-05
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- INSTALL | 12 ++++++------ MD5 | 12 ++++++------ R/pbdZMQ-package.r | 7 ------- inst/CITATION | 20 ++++++++++---------- man/a0_a_pbdZMQ-package.Rd | 7 ------- 7 files changed, 30 insertions(+), 40 deletions(-)
Title: Furniture for Quantitative Scientists
Description: Contains four main functions (i.e., four pieces of furniture):
table1() which produces a well-formatted table of descriptive statistics common as Table 1
in research articles, tableC() which produces a well-formatted table of correlations,
tableF() which provides frequency counts, and washer() which
is helpful in cleaning up the data. These furniture-themed functions are designed
to simplify common tasks in quantitative analysis. Other data summary and cleaning tools
are also available.
Author: Tyson S. Barrett [aut, cre] ,
Emily Brignone [aut],
Daniel J. Laxman [aut]
Maintainer: Tyson S. Barrett <t.barrett88@gmail.com>
Diff between furniture versions 1.9.12 dated 2022-04-15 and 1.9.14 dated 2023-09-05
DESCRIPTION | 10 MD5 | 14 - NEWS.md | 3 R/furniture.R | 6 build/vignette.rds |binary inst/doc/Furniture.html | 553 ++++++++++++++++++++++++------------------------ inst/doc/Table1.html | 281 ++++++++++++------------ man/furniture.Rd | 10 8 files changed, 448 insertions(+), 429 deletions(-)
Title: Handle 'JSON-stat' Format in R
Description: Handle 'JSON-stat' format (<https://json-stat.org>) in R.
Not all features are supported, especially the extensive metadata
features of 'JSON-stat'.
Author: Aaron Schumacher, Hakon Malmedal, Mans Magnusson
Maintainer: Aaron Schumacher <ajschumacher@gmail.com>
Diff between rjstat versions 0.4.2 dated 2022-03-17 and 0.4.3 dated 2023-09-05
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 12 ++++++------ R/rjstat.R | 1 + README.md | 2 +- man/rjstat.Rd | 1 + tests/testthat/test-columns.R | 2 +- 7 files changed, 15 insertions(+), 13 deletions(-)
Title: Necessary Condition Analysis
Description: Performs a Necessary Condition Analysis (NCA). (Dul, J. 2016. Necessary Condition Analysis (NCA). ''Logic and Methodology of 'Necessary but not Sufficient' causality." Organizational Research Methods 19(1), 10-52) <doi:10.1177/1094428115584005>.
NCA identifies necessary (but not sufficient) conditions in datasets, where x causes (e.g. precedes) y. Instead of drawing a regression line ''through the middle of the data'' in an xy-plot, NCA draws the ceiling line. The ceiling line y = f(x) separates the area with observations from the area without observations.
(Nearly) all observations are below the ceiling line: y <= f(x). The empty zone is in the upper left hand corner of the xy-plot (with the convention that the x-axis is ''horizontal'' and the y-axis is ''vertical'' and that values increase ''upwards'' and ''to the right''). The ceiling line is a (piecewise) linear non-decreasing line: a linear step function or a straight line. It indicates which level of x (e.g. an effort or [...truncated...]
Author: Jan Dul <jdul@rsm.nl>
Maintainer: Govert Buijs <buijs@rsm.nl>
Diff between NCA versions 3.3.2 dated 2023-06-27 and 3.3.3 dated 2023-09-05
DESCRIPTION | 11 +++++------ MD5 | 27 ++++++++++++++------------- NEWS.md | 7 +++++++ R/nca.R | 2 +- R/nca_tests.R | 15 ++++++++------- R/p_fit.R | 3 +++ R/p_loop_data.R | 4 ++-- R/p_peers.R | 11 ++++++++--- R/p_validate.R | 2 +- build |only man/NCA-package.Rd | 10 +++++----- man/nca_analysis.Rd | 4 ++-- man/nca_outliers.Rd | 1 - man/point.color.Rd | 4 +--- man/point.type.Rd | 4 ++-- 15 files changed, 59 insertions(+), 46 deletions(-)
Title: Simulating Data to Study Performance of Clustering Algorithms
Description: The utility of this package is in simulating mixtures of Gaussian
distributions with different levels of overlap between mixture
components. Pairwise overlap, defined as a sum of two
misclassification probabilities, measures the degree of
interaction between components and can be readily employed to
control the clustering complexity of datasets simulated from
mixtures. These datasets can then be used for systematic
performance investigation of clustering and finite mixture
modeling algorithms. Among other capabilities of 'MixSim', there
are computing the exact overlap for Gaussian mixtures,
simulating Gaussian and non-Gaussian data, simulating outliers
and noise variables, calculating various measures of agreement
between two partitionings, and constructing parallel
distribution plots for the graphical display of finite mixture
models.
Author: Volodymyr Melnykov [aut],
Wei-Chen Chen [aut, cre],
Ranjan Maitra [aut],
Robert Davies [ctb] ,
Stephen Moshier [ctb] ,
Rouben Rostamian [ctb]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between MixSim versions 1.1-6 dated 2022-10-24 and 1.1-7 dated 2023-09-05
ChangeLog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/CITATION | 10 +++++----- man/00_MixSim-package.Rd | 9 +-------- 5 files changed, 19 insertions(+), 21 deletions(-)
Title: Practical Smoothing with P-Splines
Description: Functions and data to reproduce all plots in the book "Practical Smoothing.
The Joys of P-splines" by Paul H.C. Eilers and Brian D. Marx (2021, ISBN:978-1108482950).
Author: Paul Eilers [aut, cre],
Brian Marx [aut],
Bin Li [aut],
Jutta Gampe [aut],
Maria Xose Rodriguez-Alvarez [aut]
Maintainer: Paul Eilers <p.eilers@erasmusmc.nl>
Diff between JOPS versions 0.1.15 dated 2021-06-03 and 0.1.19 dated 2023-09-05
DESCRIPTION | 8 ++++---- MD5 | 37 ++++++++++++++++++++----------------- NAMESPACE | 4 ++++ R/GLM_Signal_2D_support.R | 2 +- R/Sugar.R | 2 +- R/import.R | 4 ++++ R/ova.R |only R/plot_pspfit.R | 2 +- R/plot_sim_vcpsr.R | 14 ++++++++------ R/predict_support.R | 2 +- R/psPoisson.R | 2 +- R/tpower.R | 2 +- data/ova.rda |only man/JOPS.Rd | 1 + man/Sugar.Rd | 2 +- man/ova.Rd |only man/plot.pspfit.Rd | 2 +- man/plot.simvcpsr.Rd | 24 +++++++++++++----------- man/predict.pspfit.Rd | 2 +- man/psPoisson.Rd | 2 +- man/psVCSignal.Rd | 4 ++-- 21 files changed, 66 insertions(+), 50 deletions(-)
Title: EM Algorithm for Model-Based Clustering of Finite Mixture
Gaussian Distribution
Description: EM algorithms and several efficient
initialization methods for model-based clustering of finite
mixture Gaussian distribution with unstructured dispersion
in both of unsupervised and semi-supervised learning.
Author: Wei-Chen Chen [aut, cre],
Ranjan Maitra [aut],
Volodymyr Melnykov [ctb],
Dan Nettleton [ctb],
David Faden [ctb],
Rouben Rostamian [ctb],
R Core team [ctb]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between EMCluster versions 0.2-14 dated 2022-08-20 and 0.2-15 dated 2023-09-05
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- INSTALL | 2 +- MD5 | 10 +++++----- inst/CITATION | 16 ++++++++-------- man/00_EMCluster-package.Rd | 10 ---------- 6 files changed, 22 insertions(+), 28 deletions(-)
Title: Streamline Bioacoustic Analysis
Description: Functions aiming to facilitate the analysis of the structure of animal acoustic signals in 'R'. 'warbleR' makes use of the basic sound analysis tools from the package 'seewave', and offers new tools for acoustic structure analysis. The main features of the package are the use of loops to apply tasks through acoustic signals referenced in a selection (annotation) table and the production of spectrograms in image files that allow to organize data and verify acoustic analyzes. The package offers functions to explore, organize and manipulate multiple sound files, explore and download 'Xeno-Canto' recordings, detect signals automatically, create spectrograms of complete recordings or individual signals, run different measures of acoustic signal structure, evaluate the performance of measurement methods, catalog signals, characterize different structural levels in acoustic signals, run statistical analysis of duet coordination and consolidate databases and annotation tables, among others.
Author: Marcelo Araya-Salas [aut, cre]
,
Grace Smith-Vidaurre [aut]
Maintainer: Marcelo Araya-Salas <marcelo.araya@ucr.ac.cr>
Diff between warbleR versions 1.1.28 dated 2022-12-09 and 1.1.29 dated 2023-09-05
warbleR-1.1.28/warbleR/R/find_annotations.R |only warbleR-1.1.28/warbleR/R/move_imgs.R |only warbleR-1.1.28/warbleR/R/optimize_auto_detec.R |only warbleR-1.1.28/warbleR/man/compare.methods.Rd |only warbleR-1.1.28/warbleR/man/find_annotations.Rd |only warbleR-1.1.28/warbleR/man/move.imgs.Rd |only warbleR-1.1.28/warbleR/man/optimize_auto_detec.Rd |only warbleR-1.1.28/warbleR/vignettes/warbleR_sticker_v2.png |only warbleR-1.1.28/warbleR/vignettes/warbleR_sticker_v3.png |only warbleR-1.1.28/warbleR/vignettes/warbleR_sticker_v4.png |only warbleR-1.1.29/warbleR/DESCRIPTION | 16 warbleR-1.1.29/warbleR/MD5 | 363 - warbleR-1.1.29/warbleR/NAMESPACE | 10 warbleR-1.1.29/warbleR/NEWS.md | 10 warbleR-1.1.29/warbleR/R/auto_detec.R | 1054 +-- warbleR-1.1.29/warbleR/R/by_element_est.R | 89 warbleR-1.1.29/warbleR/R/catalog.R | 33 warbleR-1.1.29/warbleR/R/catalog2pdf.R | 221 warbleR-1.1.29/warbleR/R/check_sels.R | 372 - warbleR-1.1.29/warbleR/R/check_sound_files.R | 161 warbleR-1.1.29/warbleR/R/color_spectro.R | 418 - warbleR-1.1.29/warbleR/R/comp_matrix-data.R | 18 warbleR-1.1.29/warbleR/R/compare_methods.R | 1083 +-- warbleR-1.1.29/warbleR/R/consolidate.R | 183 warbleR-1.1.29/warbleR/R/cross_correlation.R | 806 +- warbleR-1.1.29/warbleR/R/cut_sels.R | 241 warbleR-1.1.29/warbleR/R/deprec_funs.R | 19 warbleR-1.1.29/warbleR/R/duration_sound_files.R | 111 warbleR-1.1.29/warbleR/R/filter_sels.R | 268 warbleR-1.1.29/warbleR/R/find_clipping.R | 123 warbleR-1.1.29/warbleR/R/find_peaks.R | 304 - warbleR-1.1.29/warbleR/R/fix_wavs.R | 251 warbleR-1.1.29/warbleR/R/freq_DTW.R | 208 warbleR-1.1.29/warbleR/R/freq_range.R | 301 - warbleR-1.1.29/warbleR/R/freq_range_detec.R | 122 warbleR-1.1.29/warbleR/R/freq_ts.R | 745 +- warbleR-1.1.29/warbleR/R/full_spectrogram2pdf.R | 190 warbleR-1.1.29/warbleR/R/full_spectrograms.R | 821 +- warbleR-1.1.29/warbleR/R/gaps.R | 123 warbleR-1.1.29/warbleR/R/image_to_wave.R | 157 warbleR-1.1.29/warbleR/R/inflections.R | 98 warbleR-1.1.29/warbleR/R/info_sound_files.R | 76 warbleR-1.1.29/warbleR/R/internal_functions.R | 3561 +++++++----- warbleR-1.1.29/warbleR/R/lbh_selec_table-data.R | 24 warbleR-1.1.29/warbleR/R/lbh_selec_table2-data.R | 22 warbleR-1.1.29/warbleR/R/mfcc_stats.R | 374 - 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warbleR-1.1.29/warbleR/R/sort_colms.R | 47 warbleR-1.1.29/warbleR/R/sound_pressure_level.R | 194 warbleR-1.1.29/warbleR/R/spectro_analysis.R | 8 warbleR-1.1.29/warbleR/R/spectrograms.R | 845 +- warbleR-1.1.29/warbleR/R/split_sound_files.R | 302 - warbleR-1.1.29/warbleR/R/tailor_sels.R | 830 +- warbleR-1.1.29/warbleR/R/test_coordination.R | 556 - warbleR-1.1.29/warbleR/R/track_freq_contour.R | 945 +-- warbleR-1.1.29/warbleR/R/track_harmonic.R | 205 warbleR-1.1.29/warbleR/R/try_na.R | 20 warbleR-1.1.29/warbleR/R/tweak_spectro.R | 24 warbleR-1.1.29/warbleR/R/warbleR-package.R | 153 warbleR-1.1.29/warbleR/R/warbleR_options.R | 167 warbleR-1.1.29/warbleR/R/wav_2_flac.R | 391 - warbleR-1.1.29/warbleR/R/wpd_features.R | 169 warbleR-1.1.29/warbleR/R/xc_maps.R | 468 - warbleR-1.1.29/warbleR/R/zzz.R | 17 warbleR-1.1.29/warbleR/README.md | 83 warbleR-1.1.29/warbleR/data/comp_matrix.rda |binary warbleR-1.1.29/warbleR/data/lbh_selec_table.rda |binary warbleR-1.1.29/warbleR/data/lbh_selec_table2.rda |binary warbleR-1.1.29/warbleR/data/new_function_names.rda |binary warbleR-1.1.29/warbleR/data/selec.table.rda |binary warbleR-1.1.29/warbleR/data/sim_coor_sing.rda |binary warbleR-1.1.29/warbleR/inst/CITATION | 5 warbleR-1.1.29/warbleR/inst/doc/Intro_to_warbleR.R | 172 warbleR-1.1.29/warbleR/inst/doc/Intro_to_warbleR.Rmd | 195 warbleR-1.1.29/warbleR/inst/doc/Intro_to_warbleR.html | 531 - 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Title: Utility Functions
Description: Base R sometimes requires verbose statements for simple,
often recurring tasks, such as printing text without trailing
space, ending with newline. This package aims at providing
shorthands for such tasks.
Author: Tobias Schmidt [aut, cre]
Maintainer: Tobias Schmidt <tobias.schmidt331@gmail.com>
Diff between toscutil versions 2.7.3 dated 2023-08-28 and 2.7.4 dated 2023-09-05
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/base.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Functions for Nonlinear Least Squares Solutions - Updated 2022
Description: Provides tools for working with nonlinear least squares problems.
For the estimation of models reliable and robust tools than nls(), where the
the Gauss-Newton method frequently stops with 'singular gradient' messages.
This is accomplished by using, where possible, analytic derivatives to compute
the matrix of derivatives and a stabilization of the solution of the estimation
equations. Tools for approximate or externally supplied derivative matrices
are included. Bounds and masks on parameters are handled properly.
Author: John C Nash [aut, cre],
Duncan Murdoch [aut],
Fernando Miguez [ctb],
Arkajyoti Bhattacharjee [ctb]
Maintainer: John C Nash <nashjc@uottawa.ca>
Diff between nlsr versions 2023.5.8 dated 2023-05-10 and 2023.8.31 dated 2023-09-05
nlsr-2023.5.8/nlsr/inst/doc/development/nlsr-devdoc.pdf |only nlsr-2023.8.31/nlsr/DESCRIPTION | 8 - nlsr-2023.8.31/nlsr/MD5 | 28 ++-- nlsr-2023.8.31/nlsr/build/vignette.rds |binary nlsr-2023.8.31/nlsr/inst/doc/FixedParameters.pdf |binary nlsr-2023.8.31/nlsr/inst/doc/Intro-to-nlsr.pdf |binary nlsr-2023.8.31/nlsr/inst/doc/R-analytic-derivatives.pdf |binary nlsr-2023.8.31/nlsr/inst/doc/development/BellX.R |only nlsr-2023.8.31/nlsr/inst/doc/development/FixedParameters.Rmd |only nlsr-2023.8.31/nlsr/inst/doc/development/FixedParameters.pdf |only nlsr-2023.8.31/nlsr/inst/doc/development/ImproveNLS.bib |only nlsr-2023.8.31/nlsr/inst/doc/development/Intro-to-nlsr.Rmd |only nlsr-2023.8.31/nlsr/inst/doc/development/Intro-to-nlsr.pdf |only nlsr-2023.8.31/nlsr/inst/doc/development/R-analytic-derivatives.Rmd |only nlsr-2023.8.31/nlsr/inst/doc/nlsr-derivs.pdf |binary nlsr-2023.8.31/nlsr/inst/doc/nlsr-devdoc.R | 3 nlsr-2023.8.31/nlsr/inst/doc/nlsr-devdoc.Rmd | 57 +++++----- nlsr-2023.8.31/nlsr/inst/doc/nlsr-devdoc.pdf |binary nlsr-2023.8.31/nlsr/vignettes/nlsr-devdoc.Rmd | 57 +++++----- 19 files changed, 81 insertions(+), 72 deletions(-)
Title: Estimating Time-Varying k-Order Mixed Graphical Models
Description: Estimation of k-Order time-varying Mixed Graphical Models and mixed VAR(p) models via elastic-net regularized neighborhood regression. For details see Haslbeck & Waldorp (2020) <doi:10.18637/jss.v093.i08>.
Author: Jonas Haslbeck
Maintainer: Jonas Haslbeck <jonashaslbeck@gmail.com>
Diff between mgm versions 1.2-13 dated 2022-07-07 and 1.2-14 dated 2023-09-05
DESCRIPTION | 8 - MD5 | 18 +-- NEWS | 3 R/Reg2Graph.R | 151 ++++++++++++++--------------- R/getSign.R | 233 ++++++++++++++++++++++++++++++---------------- R/mgm.R | 13 +- R/nodeEst.R | 2 data/autism_data.RData |binary man/mgm-package.Rd | 10 - tests/testthat/Rplots.pdf |binary 10 files changed, 258 insertions(+), 180 deletions(-)
Title: Kalman Filter and Smoother for Exponential Family State Space
Models
Description: State space modelling is an efficient and flexible framework for
statistical inference of a broad class of time series and other data. KFAS
includes computationally efficient functions for Kalman filtering, smoothing,
forecasting, and simulation of multivariate exponential family state space models,
with observations from Gaussian, Poisson, binomial, negative binomial, and gamma
distributions. See the paper by Helske (2017) <doi:10.18637/jss.v078.i10> for details.
Author: Jouni Helske [aut, cre]
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between KFAS versions 1.5.0 dated 2023-02-07 and 1.5.1 dated 2023-09-05
ChangeLog | 723 ++++++++++++++++++++++++++--------------------------- DESCRIPTION | 6 MD5 | 12 R/KFAS-package.R | 2 build/vignette.rds |binary inst/doc/KFAS.pdf |binary man/KFAS.Rd | 1 7 files changed, 374 insertions(+), 370 deletions(-)
Title: Analysis of Chronological Patterns from Archaeological Count
Data
Description: A toolkit for absolute and relative dating and analysis of
chronological patterns. This package includes functions for
chronological modeling and dating of archaeological assemblages from
count data. It provides methods for matrix seriation. It also allows
to compute time point estimates and density estimates of the
occupation and duration of an archaeological site.
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [ctb] ,
Ben Marwick [ctb] ,
Anne Philippe [ctb]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between kairos versions 2.0.0 dated 2023-08-30 and 2.0.1 dated 2023-09-05
kairos-2.0.0/kairos/inst/tinytest/_snaps/accumulation.rds |only kairos-2.0.0/kairos/inst/tinytest/_snaps/event1.rds |only kairos-2.0.0/kairos/inst/tinytest/_snaps/event2.rds |only kairos-2.0.0/kairos/inst/tinytest/_snaps/event_bootstrap.rds |only kairos-2.0.0/kairos/inst/tinytest/_snaps/mcd_bootstrap.rds |only kairos-2.0.1/kairos/DESCRIPTION | 6 kairos-2.0.1/kairos/MD5 | 61 ++-- kairos-2.0.1/kairos/NEWS.md | 4 kairos-2.0.1/kairos/R/AllClasses.R | 3 kairos-2.0.1/kairos/R/AllGenerics.R | 28 - kairos-2.0.1/kairos/R/event_date.R | 141 ++++++++-- kairos-2.0.1/kairos/R/event_plot.R | 10 kairos-2.0.1/kairos/R/kairos-internal.R | 121 +++----- kairos-2.0.1/kairos/R/kairos-package.R | 2 kairos-2.0.1/kairos/R/validate.R | 3 kairos-2.0.1/kairos/README.md | 4 kairos-2.0.1/kairos/inst/doc/bibliography.html | 4 kairos-2.0.1/kairos/inst/doc/event.html | 56 +-- kairos-2.0.1/kairos/inst/doc/seriation.html | 4 kairos-2.0.1/kairos/inst/examples/ex-event.R | 17 - kairos-2.0.1/kairos/inst/tinytest/_snaps/event_column.rds |only kairos-2.0.1/kairos/inst/tinytest/_snaps/event_jackknife.rds |binary kairos-2.0.1/kairos/inst/tinytest/_snaps/event_row.rds |only kairos-2.0.1/kairos/inst/tinytest/_tinysnapshot/plot_event_activ-FALSE.svg | 105 +++---- kairos-2.0.1/kairos/inst/tinytest/_tinysnapshot/plot_event_activ-TRUE.svg | 75 ++--- kairos-2.0.1/kairos/inst/tinytest/_tinysnapshot/plot_event_tempo.svg | 34 +- kairos-2.0.1/kairos/inst/tinytest/test_event.R | 32 +- kairos-2.0.1/kairos/inst/tinytest/test_mcd.R | 16 - kairos-2.0.1/kairos/man/EventDate-class.Rd | 3 kairos-2.0.1/kairos/man/event.Rd | 33 +- kairos-2.0.1/kairos/man/figures/README-aoristic-2.png |binary kairos-2.0.1/kairos/man/kairos-package.Rd | 2 kairos-2.0.1/kairos/man/model.Rd | 17 - kairos-2.0.1/kairos/man/plot_event.Rd | 30 +- kairos-2.0.1/kairos/man/predict_event.Rd | 27 + 35 files changed, 476 insertions(+), 362 deletions(-)
Title: Functional Control Charts
Description: Provides functional control charts
for statistical process monitoring of functional data,
using the methods of Capezza et al. (2020) <doi:10.1002/asmb.2507> and
Centofanti et al. (2021) <doi:10.1080/00401706.2020.1753581>.
The package is thoroughly illustrated in the paper of
Capezza et al (2023) <doi:10.1080/00224065.2023.2219012>.
Author: Christian Capezza [cre, aut],
Fabio Centofanti [aut],
Antonio Lepore [aut],
Alessandra Menafoglio [aut],
Biagio Palumbo [aut],
Simone Vantini [aut]
Maintainer: Christian Capezza <christian.capezza@unina.it>
Diff between funcharts versions 1.3.1 dated 2023-02-20 and 1.3.2 dated 2023-09-05
funcharts-1.3.1/funcharts/tests/testthat/Rplots.pdf |only funcharts-1.3.2/funcharts/DESCRIPTION | 10 +- funcharts-1.3.2/funcharts/MD5 | 60 ++++++------- funcharts-1.3.2/funcharts/NEWS.md | 6 + funcharts-1.3.2/funcharts/R/00_mfd.R | 11 -- funcharts-1.3.2/funcharts/R/funcharts-package.R |only funcharts-1.3.2/funcharts/R/funcharts.R | 6 + funcharts-1.3.2/funcharts/R/simulate.R | 7 + funcharts-1.3.2/funcharts/README.md | 15 ++- funcharts-1.3.2/funcharts/build/partial.rdb |only funcharts-1.3.2/funcharts/build/vignette.rds |binary funcharts-1.3.2/funcharts/inst/doc/capezza2020.html | 36 +++---- funcharts-1.3.2/funcharts/inst/doc/centofanti2021.html | 78 ++++++++--------- funcharts-1.3.2/funcharts/inst/doc/colosimo2010.html | 76 ++++++++-------- funcharts-1.3.2/funcharts/inst/doc/mfd.html | 12 +- funcharts-1.3.2/funcharts/man/air.Rd | 22 ++-- funcharts-1.3.2/funcharts/man/control_charts_pca.Rd | 39 +++----- funcharts-1.3.2/funcharts/man/control_charts_sof_pc.Rd | 60 +++++-------- funcharts-1.3.2/funcharts/man/data_sim_mfd.Rd | 4 funcharts-1.3.2/funcharts/man/fof_pc.Rd | 55 ++++------- funcharts-1.3.2/funcharts/man/funcharts-package.Rd |only funcharts-1.3.2/funcharts/man/funcharts.Rd | 56 ++++++------ funcharts-1.3.2/funcharts/man/get_outliers_mfd.Rd | 6 - funcharts-1.3.2/funcharts/man/inprod_mfd_diag.Rd | 2 funcharts-1.3.2/funcharts/man/mfd.Rd | 11 +- funcharts-1.3.2/funcharts/man/predict_fof_pc.Rd | 19 +--- funcharts-1.3.2/funcharts/man/predict_sof_pc.Rd | 14 +-- funcharts-1.3.2/funcharts/man/regr_cc_fof.Rd | 4 funcharts-1.3.2/funcharts/man/regr_cc_sof.Rd | 24 ++--- funcharts-1.3.2/funcharts/man/sim_funcharts.Rd | 2 funcharts-1.3.2/funcharts/man/simulate_mfd.Rd | 21 +--- funcharts-1.3.2/funcharts/man/sof_pc.Rd | 33 ++----- funcharts-1.3.2/funcharts/man/sof_pc_real_time.Rd | 2 33 files changed, 331 insertions(+), 360 deletions(-)
Title: Diagnostic Plot and Multivariate Summary Statistics of Weighted
Samples from Importance Sampling
Description: Fast functions for effective sample size, weighted multivariate
mean, variance, and quantile computation, and weight diagnostic plot for
generic importance sampling type or other probability weighted samples.
Author: Jouni Helske [aut, cre]
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between diagis versions 0.2.2 dated 2021-11-29 and 0.2.3 dated 2023-09-05
DESCRIPTION | 8 MD5 | 34 +- NEWS | 92 +++---- R/diagis-package.R | 2 R/ess.R | 128 +++++----- R/means.R | 432 +++++++++++++++++------------------ R/ses.R | 150 ++++++------ R/vars.R | 296 ++++++++++++------------ R/weighted_quantile.R | 212 ++++++++--------- build/vignette.rds |binary inst/CITATION | 18 - inst/doc/diagis.Rmd | 182 +++++++------- inst/doc/diagis.html | 501 ++++++++++++++++++++++++++++++++--------- man/diagis.Rd | 1 man/weighted_quantile.Rd | 68 ++--- tests/testthat/test-quantile.R | 46 +-- vignettes/diagis.Rmd | 182 +++++++------- vignettes/diagis.bib | 162 ++++++------- 18 files changed, 1405 insertions(+), 1109 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: Hierarchical continuous (and discrete) time state space modelling, for linear
and nonlinear systems measured by continuous variables, with limited support for
binary data. The subject specific dynamic system is modelled as a stochastic
differential equation (SDE) or difference equation, measurement models are typically multivariate normal factor models.
Linear mixed effects SDE's estimated via maximum likelihood and optimization are the default.
Nonlinearities, (state dependent parameters) and random effects on all parameters
are possible, using either max likelihood / max a posteriori optimization
(with optional importance sampling) or Stan's Hamiltonian Monte Carlo sampling.
See <https://github.com/cdriveraus/ctsem/raw/master/vignettes/hierarchicalmanual.pdf>
for details. Priors may be used. For the conceptual overview of the hierarchical Bayesian
linear SDE approach,
see <https://www.researchgate.net/publication/324093594_Hierarchical_Bayesian_Continuous_Time_Dynamic_Mod [...truncated...]
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph],
Trustees of Columbia University [cph]
Maintainer: Charles Driver <charles.driver@ife.uzh.ch>
Diff between ctsem versions 3.7.6 dated 2023-03-26 and 3.8.1 dated 2023-09-05
ctsem-3.7.6/ctsem/NEWS |only ctsem-3.7.6/ctsem/R/ctsem.R |only ctsem-3.7.6/ctsem/man/ctsem.Rd |only ctsem-3.8.1/ctsem/DESCRIPTION | 8 ctsem-3.8.1/ctsem/MD5 | 131 +-- ctsem-3.8.1/ctsem/NEWS.md |only ctsem-3.8.1/ctsem/R/ctCheckFit.R | 6 ctsem-3.8.1/ctsem/R/ctDataHelp.R | 2 ctsem-3.8.1/ctsem/R/ctDiscretePars.R | 2 ctsem-3.8.1/ctsem/R/ctDiscretiseData.R | 2 ctsem-3.8.1/ctsem/R/ctKalman.R | 65 - ctsem-3.8.1/ctsem/R/ctModel.R | 20 ctsem-3.8.1/ctsem/R/ctStanContinuousPars.R | 2 ctsem-3.8.1/ctsem/R/ctStanData.R | 68 + ctsem-3.8.1/ctsem/R/ctStanFit.R | 168 +--- ctsem-3.8.1/ctsem/R/ctStanGenerate.R | 13 ctsem-3.8.1/ctsem/R/ctStanKalman.R | 64 + ctsem-3.8.1/ctsem/R/ctStanModelWriter.R | 305 +++---- ctsem-3.8.1/ctsem/R/ctSummarise.R | 9 ctsem-3.8.1/ctsem/R/ctTIpredAuto.R | 2 ctsem-3.8.1/ctsem/R/ctdataupdate.R | 23 ctsem-3.8.1/ctsem/R/ctsem-package.R |only ctsem-3.8.1/ctsem/R/ctsemUtils.R | 4 ctsem-3.8.1/ctsem/R/isdiag.R | 2 ctsem-3.8.1/ctsem/R/plot.ctStanFit.R | 4 ctsem-3.8.1/ctsem/R/sgd.R | 15 ctsem-3.8.1/ctsem/R/stan_unconstrainsamples.R | 2 ctsem-3.8.1/ctsem/R/stanoptimis.R | 391 +++++----- ctsem-3.8.1/ctsem/R/summary.ctStanFit.R | 6 ctsem-3.8.1/ctsem/R/tformshapes.R | 2 ctsem-3.8.1/ctsem/R/zzz.R |only ctsem-3.8.1/ctsem/README.md | 31 ctsem-3.8.1/ctsem/build/vignette.rds |binary ctsem-3.8.1/ctsem/configure.win | 2 ctsem-3.8.1/ctsem/data/ctstantestdat.rda |binary ctsem-3.8.1/ctsem/data/ctstantestfit.rda |binary ctsem-3.8.1/ctsem/inst/doc/hierarchicalmanual.pdf |binary ctsem-3.8.1/ctsem/inst/doc/hierarchicalmanual.rnw | 10 ctsem-3.8.1/ctsem/inst/stan/ctsm.stan | 314 +++----- ctsem-3.8.1/ctsem/inst/stan/ctsmgen.stan | 314 +++----- ctsem-3.8.1/ctsem/man/Oscillating.Rd | 2 ctsem-3.8.1/ctsem/man/ctCheckFit.Rd | 2 ctsem-3.8.1/ctsem/man/ctDocs.Rd | 2 ctsem-3.8.1/ctsem/man/ctFit.Rd | 2 ctsem-3.8.1/ctsem/man/ctKalman.Rd | 7 ctsem-3.8.1/ctsem/man/ctModel.Rd | 3 ctsem-3.8.1/ctsem/man/ctStanDiscretePars.Rd | 1 ctsem-3.8.1/ctsem/man/ctStanDiscreteParsPlot.Rd | 1 ctsem-3.8.1/ctsem/man/ctStanFit.Rd | 33 ctsem-3.8.1/ctsem/man/ctStanKalman.Rd | 17 ctsem-3.8.1/ctsem/man/ctsem-package.Rd |only ctsem-3.8.1/ctsem/man/isdiag.Rd | 2 ctsem-3.8.1/ctsem/man/stan_unconstrainsamples.Rd | 2 ctsem-3.8.1/ctsem/man/stanoptimis.Rd | 19 ctsem-3.8.1/ctsem/tests/testthat/test-bivariatetrait_hmc.R | 2 ctsem-3.8.1/ctsem/tests/testthat/test-bootHessian.R | 19 ctsem-3.8.1/ctsem/tests/testthat/test-corrcheck.R | 4 ctsem-3.8.1/ctsem/tests/testthat/test-ctLOO.R | 2 ctsem-3.8.1/ctsem/tests/testthat/test-ctRaschExampleTest.R | 8 ctsem-3.8.1/ctsem/tests/testthat/test-dtVct.R | 10 ctsem-3.8.1/ctsem/tests/testthat/test-fixedvalsunspot.R | 2 ctsem-3.8.1/ctsem/tests/testthat/test-knownFits.R | 5 ctsem-3.8.1/ctsem/tests/testthat/test-nonlinearVlinear.R | 6 ctsem-3.8.1/ctsem/tests/testthat/test-stantipred.R | 142 +-- ctsem-3.8.1/ctsem/tests/testthat/test-sunspots.R | 24 ctsem-3.8.1/ctsem/tests/testthat/test-tdeffectvariation_covtest.R | 46 - ctsem-3.8.1/ctsem/tests/testthat/test-timevarying.R | 10 ctsem-3.8.1/ctsem/tests/testthat/test-ukfpoptest.R | 33 ctsem-3.8.1/ctsem/tests/testthat/test_behavGenNLcor.R | 12 ctsem-3.8.1/ctsem/vignettes/hierarchicalmanual.rnw | 10 70 files changed, 1214 insertions(+), 1201 deletions(-)
Title: Canonical Correlation Analysis
Description: Provides a set of functions that extend the
'cancor' function with new numerical and graphical outputs. It
also include a regularized extension of the canonical
correlation analysis to deal with datasets with more variables
than observations.
Author: Ignacio Gonzalez, Sebastien Dejean
Maintainer: Sebastien Dejean <sebastien.dejean@math.univ-toulouse.fr>
Diff between CCA versions 1.2.1 dated 2021-03-01 and 1.2.2 dated 2023-09-05
DESCRIPTION | 13 ++++++------- MD5 | 4 ++-- man/CCA-package.Rd | 18 ++---------------- 3 files changed, 10 insertions(+), 25 deletions(-)
Title: Fitting Linear Models with Endogenous Regressors using Latent
Instrumental Variables
Description: Fits linear models with endogenous regressor using latent instrumental variable approaches.
The methods included in the package are Lewbel's (1997) <doi:10.2307/2171884> higher moments approach as well as
Lewbel's (2012) <doi:10.1080/07350015.2012.643126> heteroscedasticity approach, Park and Gupta's (2012) <doi:10.1287/mksc.1120.0718> joint estimation method
that uses Gaussian copula and Kim and Frees's (2007) <doi:10.1007/s11336-007-9008-1> multilevel generalized
method of moment approach that deals with endogeneity in a multilevel setting.
These are statistical techniques to address the endogeneity problem where no external instrumental variables are needed.
See the publication related to this package in the Journal of Statistical Software for more details: <doi:10.18637/jss.v107.i03>.
Note that with version 2.0.0 sweeping changes were introduced which greatly improve functionality and usability but break backwards compatibility.
Author: Raluca Gui [cre, aut],
Markus Meierer [aut],
Rene Algesheimer [aut],
Patrik Schilter [aut]
Maintainer: Raluca Gui <raluca.gui@gmail.com>
Diff between REndo versions 2.4.8 dated 2023-02-07 and 2.4.9 dated 2023-09-05
DESCRIPTION | 11 ++++--- MD5 | 12 ++++---- NEWS.md | 8 +++++ R/REndo-package.R | 5 +++ README.md | 78 ++++++++++++++++++++++++------------------------------ build/partial.rdb |only inst/CITATION |only man/REndo.Rd | 6 ++++ 8 files changed, 67 insertions(+), 53 deletions(-)
Title: Missing Person Identification Tools
Description: A set of decision making tools to conduct missing person searches. Particularly, it allows computing optimal LR threshold for declaring potential matches in DNA-based database search. More recently 'mispitools' incorporates preliminary investigation data based LRs. Statistical weight of different traces of evidence such as biological sex, age and hair color are presented. For citing mispitools please use the following references: Marsico and Caridi, 2023 <doi:10.1016/j.fsigen.2023.102891> and Marsico, Vigeland et al. 2021 <doi:10.1016/j.fsigen.2021.102519>.
Author: Franco Marsico [aut, cre]
Maintainer: Franco Marsico <franco.lmarsico@gmail.com>
Diff between mispitools versions 0.4.0 dated 2023-04-06 and 1.0.0 dated 2023-09-05
mispitools-0.4.0/mispitools/man/mispitools.Rd |only mispitools-1.0.0/mispitools/DESCRIPTION | 10 +- mispitools-1.0.0/mispitools/MD5 | 16 +-- mispitools-1.0.0/mispitools/R/CondPlot.R | 11 +- mispitools-1.0.0/mispitools/R/mispitools.R | 20 +--- mispitools-1.0.0/mispitools/R/simLRgen.R | 8 - mispitools-1.0.0/mispitools/README.md | 83 ++++++------------ mispitools-1.0.0/mispitools/build/partial.rdb |binary mispitools-1.0.0/mispitools/man/mispitools-package.Rd |only mispitools-1.0.0/mispitools/man/simLRgen.Rd | 4 10 files changed, 64 insertions(+), 88 deletions(-)
Title: Implementation of Remez Algorithm for Polynomial and Rational
Function Approximation
Description: Implements the algorithm of Remez (1962) for polynomial minimax
approximation and of Cody et al. (1968) <doi:10.1007/BF02162506> for
rational minimax approximation.
Author: Avraham Adler [aut, cre, cph]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between minimaxApprox versions 0.2.0 dated 2023-09-04 and 0.2.1 dated 2023-09-05
DESCRIPTION | 6 +-- MD5 | 10 ++--- build/partial.rdb |binary inst/CITATION | 2 - inst/NEWS.Rd | 10 +++++ inst/tinytest/test_MiniMaxApprox.R | 68 ++++++++++++++++++++----------------- 6 files changed, 56 insertions(+), 40 deletions(-)
Title: Clustering High-Throughput Transcriptome Sequencing (HTS) Data
Description: A Poisson mixture model is implemented to cluster genes from high-
throughput transcriptome sequencing (RNA-seq) data. Parameter estimation is
performed using either the EM or CEM algorithm, and the slope heuristics are
used for model selection (i.e., to choose the number of clusters).
Author: Andrea Rau, Gilles Celeux, Marie-Laure Martin-Magniette, Cathy Maugis-
Rabusseau
Maintainer: Andrea Rau <andrea.rau@jouy.inra.fr>
Diff between HTSCluster versions 2.0.10 dated 2022-08-24 and 2.0.11 dated 2023-09-05
DESCRIPTION | 8 ++--- MD5 | 31 ++++++++++---------- build |only inst/CITATION | 21 ++++++-------- inst/NEWS | 35 ++++++++++++----------- inst/doc/HTSCluster.R | 17 ++++++----- inst/doc/HTSCluster.Rnw | 68 +++++++++++++++++++++++----------------------- inst/doc/HTSCluster.pdf |binary man/HTSCluster-package.Rd | 12 -------- man/Init.Rd | 14 ++++----- man/PoisMixClus.Rd | 18 ++++++------ man/PoisMixMean.Rd | 2 - man/PoisMixSim.Rd | 2 - man/highDimensionARI.Rd | 2 - man/logLikePoisMix.Rd | 2 - man/probaPost.Rd | 2 - man/summary.HTSCluster.Rd | 12 ++++---- 17 files changed, 119 insertions(+), 127 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-06 1.0.3
2022-09-22 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-05 1.0.10
2022-04-19 1.0.9