Title: Interface to the US EPA Air Quality System (AQS) API
Description: Offers functions for fetching JSON data from the US EPA Air Quality
System (AQS) API with options to comply with the API rate limits.
See <https://aqs.epa.gov/aqsweb/documents/data_api.html> for
details of the AQS API.
Author: Jaehyun Joo [aut, cre],
Blanca Himes [aut]
Maintainer: Jaehyun Joo <jaehyunjoo@outlook.com>
Diff between raqs versions 1.0.0 dated 2023-09-11 and 1.0.1 dated 2023-09-23
DESCRIPTION | 6 +++--- MD5 | 23 ++++++++++++----------- NEWS.md |only R/aqs_annualdata.R | 7 +++---- R/aqs_api_request.R | 5 +++-- R/aqs_quarterlydata.R | 9 ++++----- R/aqs_user.R | 3 +-- R/raqs-package.R | 2 +- R/utils.R | 4 ++-- man/aqs_annualdata.Rd | 7 +++---- man/aqs_quarterlydata.Rd | 9 ++++----- man/raqs-package.Rd | 2 +- man/set_aqs_user.Rd | 3 +-- 13 files changed, 38 insertions(+), 42 deletions(-)
Title: Time Series Plot
Description: A fast and elegant time series visualization package. In addition to the
standard R plot types, this package supports candle sticks, open-high-low-close, and
volume plots. Useful for visualizing any time series data, e.g., stock prices and
technical indicators.
Author: RTSVizTeam [aut, cph],
Irina Kapler [cre]
Maintainer: Irina Kapler <irkapler@gmail.com>
Diff between rtsplot versions 0.1.4 dated 2021-10-29 and 0.1.5 dated 2023-09-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/rtsplot.r | 2 +- R/utils.r | 2 -- man/rtsplot.Rd | 18 ++++++++++++++++++ 5 files changed, 27 insertions(+), 11 deletions(-)
Title: Visualizing Panel Data
Description: Visualizes panel data. It has three main functionalities: (1) it plots the treatment status and missing values in a panel dataset; (2) it visualizes the temporal dynamics of a main variable of interest; (3) it depicts the bivariate relationships between a treatment variable and an outcome variable either by unit or in aggregate. For details, see <doi:10.18637/jss.v107.i07>.
Author: Hongyu Mou [aut],
Licheng Liu [aut],
Yiqing Xu [aut, cre]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between panelView versions 1.1.16 dated 2023-02-14 and 1.1.17 dated 2023-09-23
DESCRIPTION | 10 +++++----- MD5 | 11 ++++++----- inst |only man/panelView-package.Rd | 4 ++++ man/panelView.Rd | 3 +++ man/simdata.Rd | 20 +++++++++++--------- man/turnout.Rd | 30 +++++++++++++----------------- 7 files changed, 42 insertions(+), 36 deletions(-)
Title: Continuous-Time Movement Modeling
Description: Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic-process movement models to animal tracking data.
The package is described in Calabrese et al (2016) <doi:10.1111/2041-210X.12559>, with models and methods based on those introduced and detailed in
Fleming & Calabrese et al (2014) <doi:10.1086/675504>,
Fleming et al (2014) <doi:10.1111/2041-210X.12176>,
Fleming et al (2015) <doi:10.1103/PhysRevE.91.032107>,
Fleming et al (2015) <doi:10.1890/14-2010.1>,
Fleming et al (2016) <doi:10.1890/15-1607>,
Péron & Fleming et al (2016) <doi:10.1186/s40462-016-0084-7>,
Fleming & Calabrese (2017) <doi:10.1111/2041-210X.12673>,
Péron et al (2017) <doi:10.1002/ecm.1260>,
Fleming et al (2017) <doi:10.1016/j.ecoinf.2017.04.008>,
Fleming et al (2018) <doi:10.1002/eap.1704>,
Winner & Noonan et al (2018) <doi:10.1111/2041-210X.13027>,
Fleming et al (2019) <doi:10.1111/2041-21 [...truncated...]
Author: Christen H. Fleming [aut, cre],
Justin M. Calabrese [aut],
Xianghui Dong [ctb],
Kevin Winner [ctb],
Bjoern Reineking [ctb],
Guillaume Peron [ctb],
Michael J. Noonan [ctb],
Bart Kranstauber [ctb],
Chad J. Wilhite [ctb],
Eliezer Gurarie [ctb],
Kamran Sa [...truncated...]
Maintainer: Christen H. Fleming <flemingc@si.edu>
Diff between ctmm versions 1.1.0 dated 2022-11-04 and 1.2.0 dated 2023-09-23
DESCRIPTION | 20 MD5 | 212 +++---- NAMESPACE | 38 - NEWS.md | 1294 +++++++++++++++------------------------------ R/1.R | 8 R/animate.R | 10 R/anonymize.R | 2 R/bandwidth.R | 144 +++-- R/change.point.R |only R/cluster.R | 10 R/color.R | 29 + R/corridor.R |only R/covm.R | 16 R/ctmm.R | 40 + R/diagnostic.R |only R/diff.R | 55 + R/diffusion.R | 5 R/distance.R | 58 +- R/dt.R | 2 R/emulate.R | 2 R/encounter.R | 32 - R/export.R | 70 +- R/extent.R | 7 R/fit.R | 54 + R/funnel.R |only R/gaussian.R | 6 R/generic.R | 83 ++ R/grid.R | 99 ++- R/homerange.R | 31 - R/int.R |only R/kalman.R | 97 ++- R/kde.R | 136 +++- R/krige.R | 57 + R/likelihood.R | 201 +++++- R/log.R | 97 +-- R/log.ctmm.R |only R/math.R | 21 R/matrix.R | 89 ++- R/mean.R | 303 ++++++++++ R/mean.UD.R | 4 R/mean.ctmm.R | 818 +++++++++++++++------------- R/median.R | 6 R/meta.chisq.R | 58 +- R/meta.normal.R | 449 ++++++++++----- R/modes.R | 56 - R/npr.R | 2 R/occurrence.R | 6 R/optim.R | 33 - R/outlier.R | 18 R/overlap.R | 114 ++- R/parameters.R | 51 + R/periodogram.R | 8 R/plot.telemetry.R | 69 +- R/plot.variogram.R | 18 R/projection.R | 21 R/ridge.R |only R/rsf.R | 379 ++++++------- R/rsf.select.R |only R/sdm.R | 110 +++ R/select.R | 21 R/series.R | 28 R/speed.R | 14 R/speeds.R | 20 R/stats.R | 207 ++----- R/suitability.R |only R/summary.ctmm.R | 140 ++-- R/telemetry.R | 432 +++++++++------ R/transition.R |only R/ts.plot.R | 33 - R/uere.R | 2 R/units.R | 21 R/variogram.R | 8 R/variogram.fit.R | 3 R/variogram.test.R | 6 README.md | 1 TODO | 34 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/akde.R | 10 inst/doc/akde.html | 58 +- inst/doc/error.R | 2 inst/doc/error.html | 42 - inst/doc/interactions.R |only inst/doc/interactions.Rmd |only inst/doc/interactions.html |only inst/doc/periodogram.R | 6 inst/doc/periodogram.html | 58 +- inst/doc/variogram.R | 28 inst/doc/variogram.Rmd | 4 inst/doc/variogram.html | 44 - man/RSF.fit.Rd | 31 - man/akde.Rd | 2 man/as.telemetry.Rd | 27 man/bandwidth.Rd | 3 man/color.Rd | 4 man/ctmm-FAQ.Rd | 3 man/ctmm-package.Rd | 13 man/ctmm.fit.Rd | 9 man/difference.Rd | 14 man/distance.Rd | 9 man/encounter.Rd | 22 man/export.Rd | 52 + man/homerange.Rd | 15 man/intensity.Rd |only man/log.Rd | 4 man/mean.Rd | 3 man/meta.Rd | 23 man/outlie.Rd | 2 man/overlap.Rd | 4 man/plot.telemetry.Rd | 4 man/projection.Rd | 4 man/sdm.fit.Rd |only man/simulate.ctmm.Rd | 2 vignettes/interactions.Rmd |only vignettes/variogram.Rmd | 4 115 files changed, 4169 insertions(+), 2855 deletions(-)
Title: Constrained Regression for Survey Data
Description: Domain mean estimation with monotonicity or block monotone constraints. See Xu X, Meyer MC and Opsomer JD (2021)<doi:10.1016/j.jspi.2021.02.004> for more details.
Author: Xiyue Liao
Maintainer: Xiyue Liao <xliao@sdsu.edu>
Diff between csurvey versions 1.8 dated 2023-09-09 and 1.9 dated 2023-09-23
ChangeLog | 7 DESCRIPTION | 8 MD5 | 12 R/csurvey.R | 758 +++++++++++++++++++++++++++++++------------------------- data/nhdat.rda |binary data/nhdat2.rda |only man/nhdat.Rd | 11 man/nhdat2.Rd |only 8 files changed, 453 insertions(+), 343 deletions(-)
Title: Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM,
PBS/Torque)
Description: Evaluate arbitrary function calls using workers on HPC schedulers
in single line of code. All processing is done on the network without
accessing the file system. Remote schedulers are supported via SSH.
Author: Michael Schubert [aut, cre, cph]
,
ZeroMQ authors [aut, cph]
Maintainer: Michael Schubert <mschu.dev@gmail.com>
Diff between clustermq versions 0.8.95.5 dated 2023-02-19 and 0.9.0 dated 2023-09-23
clustermq-0.8.95.5/clustermq/R/zeromq.r |only clustermq-0.8.95.5/clustermq/inst/zmq.hpp |only clustermq-0.8.95.5/clustermq/man/ZeroMQ.Rd |only clustermq-0.8.95.5/clustermq/man/bind_avail.Rd |only clustermq-0.8.95.5/clustermq/man/clustermq.Rd |only clustermq-0.8.95.5/clustermq/man/purrr_lookup.Rd |only clustermq-0.8.95.5/clustermq/src/bindings.cpp |only clustermq-0.8.95.5/clustermq/src/zeromq.cpp |only clustermq-0.8.95.5/clustermq/tests/testthat/test-0-bindings.r |only clustermq-0.8.95.5/clustermq/tests/testthat/test-0-zeromq.r |only clustermq-0.8.95.5/clustermq/tests/testthat/test-2-work_chunk.r |only clustermq-0.8.95.5/clustermq/tests/testthat/test-3-worker.r |only clustermq-0.8.95.5/clustermq/tests/testthat/test-4-qsys.r |only clustermq-0.8.95.5/clustermq/tests/testthat/test-5-qsys_impl.r |only clustermq-0.8.95.5/clustermq/tests/testthat/test-6-ssh_proxy.r |only clustermq-0.8.95.5/clustermq/tests/testthat/test-7-foreach.r |only clustermq-0.9.0/clustermq/DESCRIPTION | 24 clustermq-0.9.0/clustermq/MD5 | 1032 +++++++++- clustermq-0.9.0/clustermq/NEWS.md | 64 clustermq-0.9.0/clustermq/R/Q.r | 5 clustermq-0.9.0/clustermq/R/Q_rows.r | 29 clustermq-0.9.0/clustermq/R/RcppExports.R | 36 clustermq-0.9.0/clustermq/R/clustermq-package.r | 4 clustermq-0.9.0/clustermq/R/master.r | 68 clustermq-0.9.0/clustermq/R/pool.r |only clustermq-0.9.0/clustermq/R/qsys.r | 209 -- clustermq-0.9.0/clustermq/R/qsys_local.r | 11 clustermq-0.9.0/clustermq/R/qsys_lsf.r | 22 clustermq-0.9.0/clustermq/R/qsys_multicore.r | 46 clustermq-0.9.0/clustermq/R/qsys_multiprocess.r | 42 clustermq-0.9.0/clustermq/R/qsys_sge.r | 39 clustermq-0.9.0/clustermq/R/qsys_slurm.r | 23 clustermq-0.9.0/clustermq/R/qsys_ssh.r | 110 - clustermq-0.9.0/clustermq/R/ssh_proxy.r | 97 clustermq-0.9.0/clustermq/R/summarize_result.r | 14 clustermq-0.9.0/clustermq/R/util.r | 55 clustermq-0.9.0/clustermq/R/work_chunk.r | 4 clustermq-0.9.0/clustermq/R/worker.r | 135 - clustermq-0.9.0/clustermq/R/workers.r | 9 clustermq-0.9.0/clustermq/build/vignette.rds |binary clustermq-0.9.0/clustermq/cleanup | 3 clustermq-0.9.0/clustermq/configure | 117 - clustermq-0.9.0/clustermq/inst/CITATION |only clustermq-0.9.0/clustermq/inst/SGE.tmpl | 3 clustermq-0.9.0/clustermq/inst/SSH.tmpl | 5 clustermq-0.9.0/clustermq/inst/doc/quickstart.Rmd | 2 clustermq-0.9.0/clustermq/inst/doc/quickstart.html | 2 clustermq-0.9.0/clustermq/inst/doc/technicaldocs.R | 106 - clustermq-0.9.0/clustermq/inst/doc/technicaldocs.Rmd | 342 --- clustermq-0.9.0/clustermq/inst/doc/technicaldocs.html | 435 +--- clustermq-0.9.0/clustermq/inst/doc/userguide.Rmd | 2 clustermq-0.9.0/clustermq/inst/doc/userguide.html | 2 clustermq-0.9.0/clustermq/man/Pool.Rd |only clustermq-0.9.0/clustermq/man/clustermq-package.Rd |only clustermq-0.9.0/clustermq/man/host.Rd | 2 clustermq-0.9.0/clustermq/man/master.Rd | 4 clustermq-0.9.0/clustermq/man/msg_fmt.Rd |only clustermq-0.9.0/clustermq/man/ssh_proxy.Rd | 7 clustermq-0.9.0/clustermq/man/worker.Rd | 11 clustermq-0.9.0/clustermq/man/wrap_error.Rd |only clustermq-0.9.0/clustermq/src/CMQMaster.cpp |only clustermq-0.9.0/clustermq/src/CMQMaster.h |only clustermq-0.9.0/clustermq/src/CMQProxy.cpp |only clustermq-0.9.0/clustermq/src/CMQProxy.h |only clustermq-0.9.0/clustermq/src/CMQWorker.cpp |only clustermq-0.9.0/clustermq/src/CMQWorker.h |only clustermq-0.9.0/clustermq/src/Makevars.in | 2 clustermq-0.9.0/clustermq/src/Makevars.ucrt | 12 clustermq-0.9.0/clustermq/src/Makevars.win | 8 clustermq-0.9.0/clustermq/src/RcppExports.cpp | 129 - clustermq-0.9.0/clustermq/src/common.cpp |only clustermq-0.9.0/clustermq/src/common.h |only clustermq-0.9.0/clustermq/src/cppzmq |only clustermq-0.9.0/clustermq/src/libzmq |only clustermq-0.9.0/clustermq/src/util.cpp |only clustermq-0.9.0/clustermq/tests/testthat/helper-util.r | 46 clustermq-0.9.0/clustermq/tests/testthat/test-2-worker.r |only clustermq-0.9.0/clustermq/tests/testthat/test-3-work_chunk.r |only clustermq-0.9.0/clustermq/tests/testthat/test-4-pool.r |only clustermq-0.9.0/clustermq/tests/testthat/test-5-queue.r |only clustermq-0.9.0/clustermq/tests/testthat/test-6-queue_impl.r |only clustermq-0.9.0/clustermq/tests/testthat/test-7-ssh_proxy.r |only clustermq-0.9.0/clustermq/tests/testthat/test-8-foreach.r |only clustermq-0.9.0/clustermq/tools/winlibs.R | 5 clustermq-0.9.0/clustermq/vignettes/quickstart.Rmd | 2 clustermq-0.9.0/clustermq/vignettes/technicaldocs.Rmd | 342 --- clustermq-0.9.0/clustermq/vignettes/userguide.Rmd | 2 87 files changed, 1688 insertions(+), 1981 deletions(-)
Title: Easily Send HTML Email Messages
Description: Compose and send out responsive HTML email messages that render
perfectly across a range of email clients and device sizes. Helper functions
let the user insert embedded images, web link buttons, and 'ggplot2' plot
objects into the message body. Messages can be sent through an 'SMTP'
server, through the 'RStudio Connect' service, or through the 'Mailgun' API
service <https://www.mailgun.com/>.
Author: Richard Iannone [aut, cre] ,
Joe Cheng [aut],
Jeroen Ooms [ctb] ,
Ted Goas [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Richard Iannone <rich@posit.co>
Diff between blastula versions 0.3.3 dated 2023-01-06 and 0.3.4 dated 2023-09-23
blastula-0.3.3/blastula/README.md |only blastula-0.3.4/blastula/DESCRIPTION | 32 - blastula-0.3.4/blastula/LICENSE | 2 blastula-0.3.4/blastula/MD5 | 66 +- blastula-0.3.4/blastula/NEWS.md | 10 blastula-0.3.4/blastula/R/add_attachment.R | 10 blastula-0.3.4/blastula/R/add_cta_button.R | 43 - blastula-0.3.4/blastula/R/add_ggplot.R | 33 - blastula-0.3.4/blastula/R/add_imgur_image.R | 34 - blastula-0.3.4/blastula/R/add_readable_time.R | 15 blastula-0.3.4/blastula/R/blastula_email_format.R | 86 +- blastula-0.3.4/blastula/R/block_articles.R | 63 +- blastula-0.3.4/blastula/R/block_social_links.R | 33 - blastula-0.3.4/blastula/R/block_spacer.R | 4 blastula-0.3.4/blastula/R/block_text.R | 10 blastula-0.3.4/blastula/R/block_title.R | 4 blastula-0.3.4/blastula/R/bls_template.R | 52 + blastula-0.3.4/blastula/R/compose_email.R | 14 blastula-0.3.4/blastula/R/connect_email.R | 30 - blastula-0.3.4/blastula/R/create_credentials.R | 137 +++- blastula-0.3.4/blastula/R/creds_helpers.R | 45 - blastula-0.3.4/blastula/R/get_html_str.R | 3 blastula-0.3.4/blastula/R/mime.R | 290 ++++++---- blastula-0.3.4/blastula/R/panel.R | 20 blastula-0.3.4/blastula/R/prepare_rsc_example_files.R | 1 blastula-0.3.4/blastula/R/prepare_test_message.R | 14 blastula-0.3.4/blastula/R/render_email.R | 50 + blastula-0.3.4/blastula/R/send_by_mailgun.R | 24 blastula-0.3.4/blastula/R/smtp_send.R | 67 +- blastula-0.3.4/blastula/R/text_helpers.R | 7 blastula-0.3.4/blastula/R/utils-html_manipulation.R | 263 +++++---- blastula-0.3.4/blastula/R/utils.R | 47 - blastula-0.3.4/blastula/inst/examples/connect-example-email.html |only blastula-0.3.4/blastula/man/create_smtp_creds_file.Rd | 2 blastula-0.3.4/blastula/tests/testthat/test-mime.R | 19 35 files changed, 962 insertions(+), 568 deletions(-)
Title: Bayesian Inference for Marketing/Micro-Econometrics
Description: Covers many important models used
in marketing and micro-econometrics applications.
The package includes:
Bayes Regression (univariate or multivariate dep var),
Bayes Seemingly Unrelated Regression (SUR),
Binary and Ordinal Probit,
Multinomial Logit (MNL) and Multinomial Probit (MNP),
Multivariate Probit,
Negative Binomial (Poisson) Regression,
Multivariate Mixtures of Normals (including clustering),
Dirichlet Process Prior Density Estimation with normal base,
Hierarchical Linear Models with normal prior and covariates,
Hierarchical Linear Models with a mixture of normals prior and covariates,
Hierarchical Multinomial Logits with a mixture of normals prior
and covariates,
Hierarchical Multinomial Logits with a Dirichlet Process prior and covariates,
Hierarchical Negative Binomial Regression Models,
Bayesian analysis of choice-based conjoint data,
Bayesian treatment of linear instrumental variables models,
Analysis of Multivariate Ordinal survey data with scale
usage heterogeneity (as i [...truncated...]
Author: Peter Rossi <perossichi@gmail.com>
Maintainer: Peter Rossi <perossichi@gmail.com>
Diff between bayesm versions 3.1-5 dated 2022-12-02 and 3.1-6 dated 2023-09-23
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- build/vignette.rds |binary inst/doc/Constrained_MNL_Vignette.html | 14 ++++---------- inst/doc/bayesm_Overview_Vignette.html | 20 +++++++------------- src/rhierMnlRwMixture_rcpp_loop.cpp | 5 +++-- src/rmnlIndepMetrop_rcpp_loop.cpp | 5 +++-- src/rscaleUsage_rcpp_loop.cpp | 8 +++++--- src/utilityFunctions.cpp | 5 +++-- 9 files changed, 38 insertions(+), 45 deletions(-)
Title: Urban Centrality Index
Description: Calculates the Urban Centrality Index (UCI) as in Pereira et al.,
(2013) <doi:10.1111/gean.12002>. The UCI measures the
extent to which the spatial organization of a city or region varies
from extreme polycentric to extreme monocentric in a continuous
scale from 0 to 1. Values closer to 0 indicate more polycentric patterns
and values closer to 1 indicate a more monocentric urban form.
Author: Rafael H. M. Pereira [aut, cre]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between uci versions 0.2.0 dated 2023-06-14 and 0.3.0 dated 2023-09-23
DESCRIPTION | 6 - MD5 | 30 ++++----- NEWS.md | 24 ++++--- R/internal_fun.R | 12 ++- R/uci.R | 42 +++++++------ R/uci_package.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 inst/doc/uci.R | 30 ++++++--- inst/doc/uci.Rmd | 39 +++++++++--- inst/doc/uci.html | 137 +++++++++++++++++++++++++++---------------- man/uci.Rd | 7 +- tests/tests_rafa/test_rafa.R | 116 ++++++++++++++++++++++++++++++++++++ tests/testthat/test_uci.R | 3 vignettes/uci.Rmd | 39 +++++++++--- 16 files changed, 362 insertions(+), 127 deletions(-)
Title: Compute the Rectangular Statistical Cartogram
Description: Implements the RecMap MP2 construction heuristic
<doi:10.1109/INFVIS.2004.57>.
This algorithm draws maps according to a given statistical
value, e.g., election results, population, or epidemiological data.
The basic idea of the RecMap algorithm is that each map region,
e.g., different countries, is represented by a rectangle.
The area of each rectangle represents the statistical value given
as input (maintain zero cartographic error).
C++ is used to implement the computationally intensive tasks.
The vignette included in this package provides documentation
about the usage of the recmap algorithm.
Author: Christian Panse [aut, cre]
Maintainer: Christian Panse <Christian.Panse@gmail.com>
Diff between recmap versions 1.0.16 dated 2023-09-16 and 1.0.17 dated 2023-09-23
recmap-1.0.16/recmap/inst/include/recmap.h |only recmap-1.0.16/recmap/src/Makevars |only recmap-1.0.16/recmap/src/Makevars.win |only recmap-1.0.16/recmap/src/Rrecmap.cpp |only recmap-1.0.16/recmap/src/recmap_init.c |only recmap-1.0.17/recmap/DESCRIPTION | 9 recmap-1.0.17/recmap/MD5 | 50 +- recmap-1.0.17/recmap/NAMESPACE | 79 ++- recmap-1.0.17/recmap/R/RcppExports.R | 140 ++++++ recmap-1.0.17/recmap/R/recmap.R | 205 +++++++++- recmap-1.0.17/recmap/inst/NEWS.Rd | 6 recmap-1.0.17/recmap/inst/doc/recmap.R | 1 recmap-1.0.17/recmap/inst/doc/recmap.Rmd | 1 recmap-1.0.17/recmap/inst/doc/recmap.html | 50 -- recmap-1.0.17/recmap/inst/include/recmap.cpp |only recmap-1.0.17/recmap/inst/shiny-examples/server.R | 17 recmap-1.0.17/recmap/inst/shiny-examples/ui.R | 1 recmap-1.0.17/recmap/man/as.SpatialPolygonsDataFrame.recmap.Rd | 51 -- recmap-1.0.17/recmap/man/as.recmap.SpatialPolygonsDataFrame.Rd | 85 ---- recmap-1.0.17/recmap/man/dot-draw_recmap_us_state_ev.Rd |only recmap-1.0.17/recmap/man/dot-get_7triangles.Rd |only recmap-1.0.17/recmap/man/is.recmap.Rd |only recmap-1.0.17/recmap/man/jss2711.Rd | 4 recmap-1.0.17/recmap/man/plot.recmap.Rd | 73 +-- recmap-1.0.17/recmap/man/recmap.Rd | 198 ++------- recmap-1.0.17/recmap/man/recmapGA.Rd | 122 ++--- recmap-1.0.17/recmap/man/summary.recmap.Rd | 52 -- recmap-1.0.17/recmap/src/RcppExports.cpp | 33 + recmap-1.0.17/recmap/src/Recmap.cpp |only recmap-1.0.17/recmap/tests/testthat/test-jss2711.R | 2 recmap-1.0.17/recmap/vignettes/recmap.Rmd | 1 31 files changed, 625 insertions(+), 555 deletions(-)
Title: Optimizing Acoustic Signal Detection
Description: Facilitates the automatic detection of acoustic signals,
providing functions to diagnose and optimize the performance of detection
routines. Detections from other software can also be explored and optimized.
Araya-Salas et al. (2022) <doi:10.1101/2022.12.13.520253>.
Author: Marcelo Araya-Salas [aut, cre]
,
Alec L. Robitaille [rev] ,
Sam Lapp [rev]
Maintainer: Marcelo Araya-Salas <marcelo.araya@ucr.ac.cr>
Diff between ohun versions 0.1.0 dated 2022-12-19 and 1.0.0 dated 2023-09-23
ohun-0.1.0/ohun/R/feature_acoustic_data.R |only ohun-0.1.0/ohun/R/feature_reference.R |only ohun-0.1.0/ohun/R/filter_detection.R |only ohun-0.1.0/ohun/inst/doc/ohun.R |only ohun-0.1.0/ohun/inst/doc/ohun.Rmd |only ohun-0.1.0/ohun/inst/doc/ohun.html |only ohun-0.1.0/ohun/vignettes/ohun.Rmd |only ohun-1.0.0/ohun/DESCRIPTION | 53 ohun-1.0.0/ohun/MD5 | 121 - ohun-1.0.0/ohun/NAMESPACE | 46 ohun-1.0.0/ohun/NEWS.md |only ohun-1.0.0/ohun/R/consensus_detection.R |only ohun-1.0.0/ohun/R/diagnose_detection.R | 327 ++-- ohun-1.0.0/ohun/R/energy_detector.R | 383 +---- ohun-1.0.0/ohun/R/get_envelopes.R | 366 +---- ohun-1.0.0/ohun/R/get_templates.R | 188 -- ohun-1.0.0/ohun/R/internal_functions.R | 1073 ++++++++++++++- ohun-1.0.0/ohun/R/label_detection.R | 576 +++----- ohun-1.0.0/ohun/R/label_spectro.R | 164 +- ohun-1.0.0/ohun/R/lbh1-data.R | 2 ohun-1.0.0/ohun/R/lbh2-data.R | 2 ohun-1.0.0/ohun/R/merge_overlaps.R | 77 - ohun-1.0.0/ohun/R/ohun-package.R | 15 ohun-1.0.0/ohun/R/optimize_energy_detector.R | 219 +-- ohun-1.0.0/ohun/R/optimize_template_detector.R | 116 - ohun-1.0.0/ohun/R/plot_detection.R |only ohun-1.0.0/ohun/R/split_acoustic_data.R | 178 +- ohun-1.0.0/ohun/R/summarize_acoustic_data.R |only ohun-1.0.0/ohun/R/summarize_diagnostic.R | 205 +- ohun-1.0.0/ohun/R/summarize_reference.R |only ohun-1.0.0/ohun/R/template_correlator.R | 451 +----- ohun-1.0.0/ohun/R/template_detector.R | 198 +- ohun-1.0.0/ohun/README.md | 93 - ohun-1.0.0/ohun/build/vignette.rds |binary ohun-1.0.0/ohun/data/lbh1.rda |binary ohun-1.0.0/ohun/data/lbh2.rda |binary ohun-1.0.0/ohun/data/lbh_reference.rda |binary ohun-1.0.0/ohun/inst/CITATION | 13 ohun-1.0.0/ohun/inst/doc/energy_based_detection.R |only ohun-1.0.0/ohun/inst/doc/energy_based_detection.Rmd |only ohun-1.0.0/ohun/inst/doc/energy_based_detection.html |only ohun-1.0.0/ohun/inst/doc/intro_to_ohun.R |only ohun-1.0.0/ohun/inst/doc/intro_to_ohun.Rmd |only ohun-1.0.0/ohun/inst/doc/intro_to_ohun.html |only ohun-1.0.0/ohun/inst/doc/template_based_detection.R |only ohun-1.0.0/ohun/inst/doc/template_based_detection.Rmd |only ohun-1.0.0/ohun/inst/doc/template_based_detection.html |only ohun-1.0.0/ohun/man/consensus_detection.Rd |only ohun-1.0.0/ohun/man/diagnose_detection.Rd | 87 - ohun-1.0.0/ohun/man/energy_detector.Rd | 17 ohun-1.0.0/ohun/man/feature_acoustic_data.Rd | 39 ohun-1.0.0/ohun/man/feature_reference.Rd | 57 ohun-1.0.0/ohun/man/filter_detection.Rd | 78 - ohun-1.0.0/ohun/man/get_envelopes.Rd | 68 ohun-1.0.0/ohun/man/get_templates.Rd | 20 ohun-1.0.0/ohun/man/label_detection.Rd | 84 - ohun-1.0.0/ohun/man/label_spectro.Rd | 36 ohun-1.0.0/ohun/man/lbh1.Rd | 2 ohun-1.0.0/ohun/man/lbh2.Rd | 2 ohun-1.0.0/ohun/man/merge_overlaps.Rd | 24 ohun-1.0.0/ohun/man/ohun.Rd | 13 ohun-1.0.0/ohun/man/optimize_energy_detector.Rd | 77 - ohun-1.0.0/ohun/man/optimize_template_detector.Rd | 19 ohun-1.0.0/ohun/man/plot_detection.Rd |only ohun-1.0.0/ohun/man/print.template_correlations.Rd | 2 ohun-1.0.0/ohun/man/split_acoustic_data.Rd | 22 ohun-1.0.0/ohun/man/summarize_acoustic_data.Rd |only ohun-1.0.0/ohun/man/summarize_diagnostic.Rd | 47 ohun-1.0.0/ohun/man/summarize_reference.Rd |only ohun-1.0.0/ohun/man/template_correlator.Rd | 109 - ohun-1.0.0/ohun/man/template_detector.Rd | 68 ohun-1.0.0/ohun/vignettes/analysis_workflow_energy.png |only ohun-1.0.0/ohun/vignettes/analysis_workflow_template.png |only ohun-1.0.0/ohun/vignettes/energy_based_detection.Rmd |only ohun-1.0.0/ohun/vignettes/intro_to_ohun.Rmd |only ohun-1.0.0/ohun/vignettes/ohun_sticker.png |only ohun-1.0.0/ohun/vignettes/template_based_detection.Rmd |only 77 files changed, 3157 insertions(+), 2580 deletions(-)
Title: 'NoSQL' Database Connector
Description: Simplified document database access and manipulation,
providing a common API across supported 'NoSQL' databases
'Elasticsearch', 'CouchDB', 'MongoDB' as well as
'SQLite/JSON1', 'PostgreSQL', and 'DuckDB'.
Author: Ralf Herold [aut, cre] ,
Scott Chamberlain [aut] ,
Rich FitzJohn [aut],
Jeroen Ooms [aut]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between nodbi versions 0.9.7 dated 2023-09-17 and 0.9.8 dated 2023-09-23
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/create.R | 3 ++- R/get.R | 19 ++++++++++--------- R/nodbi-package.R | 2 +- R/query.R | 18 ++++++++++-------- 7 files changed, 36 insertions(+), 28 deletions(-)
Title: An Import Mechanism for R
Description: Alternative mechanism for importing objects from packages
and R modules. The syntax allows for importing multiple objects with a single
command in an expressive way. The import package bridges some of the gap
between using library (or require) and direct (single-object) imports.
Furthermore the imported objects are not placed in the current environment.
Author: Stefan Milton Bache [aut],
Magnus Thor Torfason [aut, cre]
Maintainer: Magnus Thor Torfason <m@zulutime.net>
Diff between import versions 1.3.0 dated 2022-05-23 and 1.3.1 dated 2023-09-23
DESCRIPTION | 8 MD5 | 57 ++- NEWS.md | 29 + R/S3.R | 38 +- R/badge.R | 1 R/detect_bad_recursion.R | 16 - R/file_path.R | 15 - R/from.R | 137 ++++----- R/import.R | 35 +- R/import_aliases.R | 1 R/is_script.R | 14 R/make_import_call.R | 9 R/modified.R | 10 R/package_specs.R | 24 - R/safe_assign.R | 14 R/scripts.R | 5 R/suppress_output.R | 8 R/symbol_as_character.R | 6 R/symbol_list.R | 20 - build/build_and_release_process.R |only build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/import.Rmd | 17 - inst/doc/import.html | 471 ++++++++++++++++---------------- man/examples/some_module.R | 4 man/import.Rd | 29 + man/importfunctions.Rd | 121 ++++---- tests/test_import/module_script_error.R |only tests/test_import/module_subsequent.R |only tests/test_import/test_from.R | 23 + vignettes/import.Rmd | 17 - 31 files changed, 625 insertions(+), 507 deletions(-)
Title: Fast Change Point Detection via Sequential Gradient Descent
Description: Implements fast change point detection algorithm based on the
paper "Sequential Gradient Descent and Quasi-Newton's Method for
Change-Point Analysis" by Xianyang Zhang, Trisha Dawn
<https://proceedings.mlr.press/v206/zhang23b.html>. The algorithm
is based on dynamic programming with pruning and sequential gradient
descent. It is able to detect change points a magnitude faster than
the vanilla Pruned Exact Linear Time(PELT). The package includes examples
of linear regression, logistic regression, Poisson regression, penalized
linear regression data, and whole lot more examples with custom cost
function in case the user wants to use their own cost function.
Author: Xingchi Li [aut, cre, cph] ,
Xianyang Zhang [aut, cph],
Trisha Dawn [aut, cph]
Maintainer: Xingchi Li <anthony.li@stat.tamu.edu>
Diff between fastcpd versions 0.7.0 dated 2023-09-21 and 0.7.2 dated 2023-09-23
DESCRIPTION | 6 +-- MD5 | 14 ++++---- NEWS.md | 14 ++++++++ R/fastcpd-class.R | 73 ++++++++++++++++++++++-------------------- R/fastcpd.R | 11 ++++-- inst/CITATION | 46 +++++++++++++++++--------- man/fastcpd.Rd | 11 ++++-- tests/testthat/test-fastcpd.R | 14 ++++++++ 8 files changed, 121 insertions(+), 68 deletions(-)
Title: Copula-Based Regression Models for Multivariate Censored Data
Description: Copula-based regression models for multivariate censored data, including
bivariate right-censored data, bivariate interval-censored data, and right/interval-censored
semi-competing risks data. Currently supports Clayton, Gumbel, Frank, Joe, AMH and
Copula2 copula models. For marginal models, it supports parametric (Weibull, Loglogistic,
Gompertz) and semiparametric (Cox and transformation) models. Includes methods for
convenient prediction and plotting. Also provides a bivariate time-to-event simulation
function and an information ratio-based goodness-of-fit test for copula. Method details
can be found in Sun et.al (2019) Lifetime Data Analysis, Sun et.al (2021) Biostatistics,
Sun et.al (2022) Statistical Methods in Medical Research, Sun et.al (2022) Biometrics, and
Sun et al. (2023+) JRSSC.
Author: Tao Sun, Ying Ding
Maintainer: Tao Sun <sun.tao@ruc.edu.cn>
Diff between CopulaCenR versions 1.2.2 dated 2022-12-16 and 1.2.3 dated 2023-09-23
DESCRIPTION | 15 ++++++++------- MD5 | 11 ++++++++--- NAMESPACE | 3 +++ R/fun_rc_scmprisk_pen.R |only R/fun_scmprisk.R | 3 ++- R/rc_scmprisk_sp_copula_pen.R |only data/data_sim_scmprisk_vs.RData |only man/data_sim_scmprisk_vs.Rd |only man/rc_scmprisk_sp_copula_pen.Rd |only 9 files changed, 21 insertions(+), 11 deletions(-)
More information about changepoint.geo at CRAN
Permanent link
Title: Bounded Time Series Regression
Description: Simulate, estimate and forecast a wide range of regression based dynamic models for bounded time series, covering the most commonly applied models in the literature. The main calculations are done in 'FORTRAN', which translates into very fast algorithms. The main references are
Bayer et al. (2017) <doi:10.1016/j.jhydrol.2017.10.006>,
Pumi et al. (2019) <doi:10.1016/j.jspi.2018.10.001>,
Pumi et al. (2021) <doi:10.1111/sjos.12439> and
Pumi et al. (2022) <arXiv:2211.02097>.
Author: Taiane Schaedler Prass [aut, cre, com]
,
Guilherme Pumi [ctb, aut] ,
Fabio Mariano Bayer [ctb] ,
Jack Joseph Dongarra [ctb],
Cleve Moler [ctb],
Gilbert Wright Stewart [ctb],
Ciyou Zhu [ctb],
Richard H. Byrd [ctb],
Jorge Nocedal [ctb],
Jose Luis Moral [...truncated...]
Maintainer: Taiane Schaedler Prass <taianeprass@gmail.com>
Diff between BTSR versions 0.1.4 dated 2023-01-20 and 0.1.5 dated 2023-09-23
DESCRIPTION | 10 - MD5 | 16 +- R/btsr.R | 104 +++++++++--------- R/generic.R | 2 inst/NEWS.md | 12 ++ man/BTSR.Package.Rd | 38 ------ man/btsr.functions.Rd | 2 src/01_RNG.f90 | 275 +++++++++++++++++++++++++------------------------- src/02_base.f90 | 1 9 files changed, 224 insertions(+), 236 deletions(-)
Title: Bayesian Mortality Modelling with 'Stan'
Description: Implementation of popular mortality models using the 'rstan'
package, which provides the R interface to the 'Stan' C++ library for
Bayesian estimation. The package supports well-known models proposed in the
actuarial and demographic literature including the Lee-Carter (1992)
<doi:10.1080/01621459.1992.10475265> and the Cairns-Blake-Dowd (2006)
<doi:10.1111/j.1539-6975.2006.00195.x> models. By a simple call, the user
inputs deaths and exposures and the package outputs the MCMC simulations for
each parameter, the log likelihoods and predictions. Moreover, the package
includes tools for model selection and Bayesian model averaging by leave
future-out validation.
Author: Karim Barigou [aut, cre] ,
Pierre-Olivier Goffard [aut]
Maintainer: Karim Barigou <karim290492@gmail.com>
Diff between StanMoMo versions 1.1.1 dated 2023-09-16 and 1.2.0 dated 2023-09-23
StanMoMo-1.1.1/StanMoMo/R/forecasting_plot.R |only StanMoMo-1.1.1/StanMoMo/man/forecasting_plot.Rd |only StanMoMo-1.2.0/StanMoMo/DESCRIPTION | 12 StanMoMo-1.2.0/StanMoMo/MD5 | 30 - StanMoMo-1.2.0/StanMoMo/NAMESPACE | 47 - StanMoMo-1.2.0/StanMoMo/NEWS.md | 37 - StanMoMo-1.2.0/StanMoMo/R/StanMoMo-package.R | 43 - StanMoMo-1.2.0/StanMoMo/configure | 3 StanMoMo-1.2.0/StanMoMo/configure.win | 10 StanMoMo-1.2.0/StanMoMo/inst/doc/StanMoMo.R | 3 StanMoMo-1.2.0/StanMoMo/inst/doc/StanMoMo.Rmd | 9 StanMoMo-1.2.0/StanMoMo/inst/doc/StanMoMo.html | 717 +++++++++++++++--------- StanMoMo-1.2.0/StanMoMo/inst/doc/bma.Rmd | 4 StanMoMo-1.2.0/StanMoMo/inst/doc/bma.html | 649 +++++++++++++++------ StanMoMo-1.2.0/StanMoMo/src/Makevars | 1 StanMoMo-1.2.0/StanMoMo/vignettes/StanMoMo.Rmd | 9 StanMoMo-1.2.0/StanMoMo/vignettes/bma.Rmd | 4 17 files changed, 1045 insertions(+), 533 deletions(-)
Title: Dynamically Pluralize Phrases
Description: Converts English phrases to singular or plural form based on
the length of an associated vector. Contains helper functions to
create natural language lists from vectors and to include the length
of a vector in natural language.
Author: Alexander Rossell Hayes [aut, cre, cph]
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between plu versions 0.2.3 dated 2022-08-12 and 0.3.0 dated 2023-09-23
plu-0.2.3/plu/R/plu_nge.R |only plu-0.2.3/plu/R/utils_str.R |only plu-0.3.0/plu/DESCRIPTION | 19 +-- plu-0.3.0/plu/MD5 | 42 +++---- plu-0.3.0/plu/NEWS.md | 12 +- plu-0.3.0/plu/R/errors.R | 6 - plu-0.3.0/plu/R/get_fun.R | 6 - plu-0.3.0/plu/R/is_capital.R | 6 + plu-0.3.0/plu/R/plu_more.R | 7 - plu-0.3.0/plu/R/plu_ral.R | 137 +++++++++++++++---------- plu-0.3.0/plu/R/plu_ralize.R | 3 plu-0.3.0/plu/R/plu_stick.R | 77 +------------- plu-0.3.0/plu/R/staticimports.R |only plu-0.3.0/plu/R/sysdata.rda |binary plu-0.3.0/plu/README.md | 54 ++++++--- plu-0.3.0/plu/build/plu.pdf |binary plu-0.3.0/plu/build/stage23.rdb |only plu-0.3.0/plu/man/plu-package.Rd | 2 plu-0.3.0/plu/man/plu_more.Rd | 6 - plu-0.3.0/plu/man/plu_ral.Rd | 55 ++++------ plu-0.3.0/plu/man/plu_stick.Rd | 65 +---------- plu-0.3.0/plu/tests/testthat/test-plu_ral.R | 137 +++++++++++++++++++++---- plu-0.3.0/plu/tests/testthat/test-plu_ralize.R | 10 - plu-0.3.0/plu/tests/testthat/test-plu_stick.R | 76 ------------- 24 files changed, 344 insertions(+), 376 deletions(-)
Title: Multiverse Analyses for Conditioning Data
Description: A suite of functions for performing analyses, based on a multiverse approach, for conditioning data. Specifically, given the appropriate data, the functions are able to perform t-tests, analyses of variance, and mixed models for the provided data and return summary statistics and plots. The function is also able to return for all those tests p-values, confidence intervals, and Bayes factors. The methods are described in Lonsdorf, Gerlicher, Klingelhofer-Jens, & Krypotos (2022) <doi:10.1016/j.brat.2022.104072>.
Author: Angelos-Miltiadis Krypotos [aut, cre, cph]
Maintainer: Angelos-Miltiadis Krypotos <amkrypotos@gmail.com>
Diff between multifear versions 0.1.2 dated 2021-06-01 and 0.1.3 dated 2023-09-23
DESCRIPTION | 19 +-- MD5 | 36 +++--- NAMESPACE | 1 NEWS.md | 6 + R/bt_test_mf.R | 2 R/forestplot_mf.R | 41 +++++-- R/internal.R | 7 - R/mixed_mf.R | 3 R/rm_anova_mf.R | 11 + R/rm_banova_mf.R | 3 R/t_test_mf.R | 22 ++- R/utils.R | 2 README.md | 286 +++++++++++++++++++++++++++++---------------------- build |only inst |only man/forestplot_mf.Rd | 10 + man/mixed_mf.Rd | 3 man/rm_banova_mf.Rd | 1 vignettes |only 19 files changed, 283 insertions(+), 170 deletions(-)
Title: Create Flexible Forest Plot
Description: Create forest plot based on the layout of the data. Confidence interval in multiple columns by groups can be done easily. Editing plot, inserting/adding text, applying theme to the plot and much more.
Author: Alimu Dayimu [aut, cre]
Maintainer: Alimu Dayimu <ad938@cam.ac.uk>
Diff between forestploter versions 1.1.0 dated 2023-04-10 and 1.1.1 dated 2023-09-23
DESCRIPTION | 8 MD5 | 72 NAMESPACE | 1 NEWS.md | 9 R/add_grob.r | 10 R/check_errors.r | 9 R/forest.R | 101 - R/forestploter.R | 6 R/helper.R | 18 R/make-boxplot.R | 2 R/make-xaixs.R | 38 R/theme.R | 35 R/utils.R | 8 inst/doc/forestploter-intro.R | 24 inst/doc/forestploter-intro.Rmd | 38 inst/doc/forestploter-intro.html | 609 +++--- inst/doc/forestploter-post.R | 6 inst/doc/forestploter-post.Rmd | 8 inst/doc/forestploter-post.html | 404 ++-- man/add_grob.Rd | 6 man/check_errors.Rd | 7 man/forest.Rd | 11 man/forest_theme.Rd | 9 man/forestploter.Rd | 1 man/make_boxplot.Rd | 2 man/make_xaxis.Rd | 10 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/forest/multiple-columns-and-multi-parameters.svg | 924 ++++----- tests/testthat/_snaps/forest/multiple-columns.svg | 930 +++++----- tests/testthat/_snaps/forest/multiple-groups.svg | 234 +- tests/testthat/_snaps/make-boxplot/boxplot-groups.svg | 164 - tests/testthat/_snaps/make-boxplot/xlim-boxplot-single.svg | 2 tests/testthat/test-addgrob.R | 2 tests/testthat/test-forest.R | 900 ++++----- tests/testthat/test-theme.R | 118 - vignettes/forestploter-intro.Rmd | 38 vignettes/forestploter-post.Rmd | 8 37 files changed, 2444 insertions(+), 2328 deletions(-)
Title: Complex Pearson Distributions
Description: Probability mass function, distribution function, quantile function and random generation for the Complex Triparametric Pearson (CTP) and Complex Biparametric Pearson (CBP) distributions developed by Rodriguez-Avi et al (2003) <doi:10.1007/s00362-002-0134-7>, Rodriguez-Avi et al (2004) <doi:10.1007/BF02778271> and Olmo-Jimenez et al (2018) <doi:10.1080/00949655.2018.1482897>. The package also contains maximum-likelihood fitting functions for these models.
Author: Silverio Vilchez-Lopez [aut, cre],
Maria Jose Olmo-Jimenez [aut],
Jose Rodriguez-Avi [aut]
Maintainer: Silverio Vilchez-Lopez <svilchez@ujaen.es>
Diff between cpd versions 0.3.1 dated 2023-07-20 and 0.3.2 dated 2023-09-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/fitctp.R | 2 +- build/partial.rdb |binary 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Parametric Time to Event Analysis
Description: Performs maximum likelihood based estimation and inference on time to event data, possibly subject to non-informative right censoring. FitParaSurv() provides maximum likelihood estimates of model parameters and distributional characteristics, including the mean, median, variance, and restricted mean. CompParaSurv() compares the mean, median, and restricted mean survival experiences of two treatment groups. Candidate distributions include the exponential, gamma, generalized gamma, log-normal, and Weibull.
Author: Zachary McCaw [aut, cre]
Maintainer: Zachary McCaw <zmccaw@alumni.harvard.edu>
Diff between Temporal versions 0.3.0 dated 2021-07-20 and 0.3.0.1 dated 2023-09-23
Temporal-0.3.0.1/Temporal/DESCRIPTION | 8 Temporal-0.3.0.1/Temporal/MD5 | 102 Temporal-0.3.0.1/Temporal/R/Class.R | 12 Temporal-0.3.0.1/Temporal/R/Comparison.R | 4 Temporal-0.3.0.1/Temporal/R/Exponential.R | 3 Temporal-0.3.0.1/Temporal/R/Fitting.R | 7 Temporal-0.3.0.1/Temporal/R/Gamma.R | 7 Temporal-0.3.0.1/Temporal/R/GenGamma.R | 10 Temporal-0.3.0.1/Temporal/R/Inputs.R | 6 Temporal-0.3.0.1/Temporal/R/LogLik.R | 4 Temporal-0.3.0.1/Temporal/R/LogNormal.R | 6 Temporal-0.3.0.1/Temporal/R/NewtonRaphson.R | 5 Temporal-0.3.0.1/Temporal/R/RMST.R | 9 Temporal-0.3.0.1/Temporal/R/SurvFunctions.R | 2 Temporal-0.3.0.1/Temporal/R/Temporal-package.R |only Temporal-0.3.0.1/Temporal/R/Weibull.R | 7 Temporal-0.3.0.1/Temporal/build/vignette.rds |binary Temporal-0.3.0.1/Temporal/inst/doc/Temporal.R | 2 Temporal-0.3.0.1/Temporal/man/Temporal-package.Rd |only Temporal-0.3.0.1/Temporal/man/fit-method.Rd | 2 Temporal-0.3.0.1/Temporal/vignettes/Temporal.html | 1051 ++++++---- 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Title: UK Flood Estimation
Description: Functions to implement the methods of the Flood Estimation Handbook (FEH), associated updates and the revitalised flood hydrograph model (ReFH). Currently the package uses NRFA peak flow dataset version 12. Aside from FEH functionality, further hydrological functions are available. Most of the methods implemented in this package are described in one or more of the following: "Flood Estimation Handbook", Centre for Ecology & Hydrology (1999, ISBN:0 948540 94 X). "Flood Estimation Handbook Supplementary Report No. 1", Kjeldsen (2007, ISBN:0 903741 15 7). "Regional Frequency Analysis - an approach based on L-moments", Hosking & Wallis (1997, ISBN: 978 0 521 01940 8). "Proposal of the extreme rank plot for extreme value analysis: with an emphasis on flood frequency studies", Hammond (2019, <doi:10.2166/nh.2019.157>). "Making better use of local data in flood frequency estimation", Environment Agency (2017, ISBN: 978 1 84911 387 8). "Sampling uncertainty of UK design flood est [...truncated...]
Author: Anthony Hammond
Maintainer: Anthony Hammond <agqhammond@gmail.com>
Diff between UKFE versions 0.2.9 dated 2023-07-09 and 0.3.0 dated 2023-09-23
DESCRIPTION | 8 +-- MD5 | 25 ++++----- R/AMSP.R | 4 - R/All.R | 143 ++++++++++++++++++++++++++++++++++++++++++++++-------- R/NRFAData.R | 4 - R/QMEDData.R | 4 - data/AMSP.rda |binary data/NRFAData.rda |binary data/QMEDData.rda |binary man/AMSP.Rd | 4 - man/AggDayHour.Rd |only man/DDFImport.Rd | 14 ++--- man/NRFAData.Rd | 4 - man/QMEDData.Rd | 4 - 14 files changed, 159 insertions(+), 55 deletions(-)
Title: Discriminant Adaptive Nearest Neighbor Classification
Description: Discriminant Adaptive Nearest Neighbor Classification is a
variation of k nearest neighbors where the shape of the neighborhood is
data driven. This package implements dann and sub_dann from
Hastie (1996) <https://web.stanford.edu/~hastie/Papers/dann_IEEE.pdf>.
Author: Greg McMahan
Maintainer: Greg McMahan <gmcmacran@gmail.com>
Diff between dann versions 0.2.6 dated 2022-02-14 and 1.0.0 dated 2023-09-23
dann-0.2.6/dann/build |only dann-0.2.6/dann/inst |only dann-0.2.6/dann/man/dann_df.Rd |only dann-0.2.6/dann/man/dann_source.Rd |only dann-0.2.6/dann/man/graph_eigenvalues_df.Rd |only dann-0.2.6/dann/man/sub_dann_df.Rd |only dann-0.2.6/dann/man/sub_dann_source.Rd |only dann-0.2.6/dann/tests/testthat/test_B_dann_df.R |only dann-0.2.6/dann/tests/testthat/test_C_sub_dann.R |only dann-0.2.6/dann/tests/testthat/test_D_sub_dann_df.R |only dann-0.2.6/dann/tests/testthat/test_F_graph_eigenvalues_df.R |only dann-0.2.6/dann/vignettes |only dann-1.0.0/dann/DESCRIPTION | 19 dann-1.0.0/dann/MD5 | 79 - dann-1.0.0/dann/NAMESPACE | 23 dann-1.0.0/dann/NEWS.md | 7 dann-1.0.0/dann/R/dann.R | 626 ++++++---- dann-1.0.0/dann/R/graph_eigenvalues.R | 313 +++-- dann-1.0.0/dann/R/internal_helpers.R | 4 dann-1.0.0/dann/R/print.R |only dann-1.0.0/dann/R/sub_dann.R | 684 ++++++----- dann-1.0.0/dann/README.md | 228 +++ dann-1.0.0/dann/man/DANN_distance.Rd | 4 dann-1.0.0/dann/man/dann.Rd | 132 -- dann-1.0.0/dann/man/dann.data.frame.Rd |only dann-1.0.0/dann/man/dann.default.Rd |only dann-1.0.0/dann/man/dann.formula.Rd |only dann-1.0.0/dann/man/dann.matrix.Rd |only dann-1.0.0/dann/man/dann.recipe.Rd |only dann-1.0.0/dann/man/figures/README-graph-1.png |only dann-1.0.0/dann/man/graph_eigenvalues.Rd | 59 dann-1.0.0/dann/man/graph_eigenvalues.data.frame.Rd |only dann-1.0.0/dann/man/graph_eigenvalues.default.Rd |only dann-1.0.0/dann/man/graph_eigenvalues.formula.Rd |only dann-1.0.0/dann/man/graph_eigenvalues.matrix.Rd |only dann-1.0.0/dann/man/graph_eigenvalues.recipe.Rd |only dann-1.0.0/dann/man/predict.dann.Rd |only dann-1.0.0/dann/man/predict.sub_dann.Rd |only dann-1.0.0/dann/man/print.dann.Rd |only dann-1.0.0/dann/man/print.sub_dann.Rd |only dann-1.0.0/dann/man/sub_dann.Rd | 115 - dann-1.0.0/dann/man/sub_dann.data.frame.Rd |only dann-1.0.0/dann/man/sub_dann.default.Rd |only dann-1.0.0/dann/man/sub_dann.formula.Rd |only dann-1.0.0/dann/man/sub_dann.matrix.Rd |only dann-1.0.0/dann/man/sub_dann.recipe.Rd |only dann-1.0.0/dann/src/Makevars | 14 dann-1.0.0/dann/src/Makevars.win | 14 dann-1.0.0/dann/src/RcppExports.cpp | 5 dann-1.0.0/dann/tests/testthat.R | 1 dann-1.0.0/dann/tests/testthat/test_A_dann.R | 520 +------- dann-1.0.0/dann/tests/testthat/test_B_sub_dann.R |only dann-1.0.0/dann/tests/testthat/test_C_predict_dann.R |only dann-1.0.0/dann/tests/testthat/test_D_predict_sub_dann.R |only dann-1.0.0/dann/tests/testthat/test_E_graph_eigenvalues.R | 85 - dann-1.0.0/dann/tests/testthat/test_F_print.R |only 56 files changed, 1428 insertions(+), 1504 deletions(-)
Title: Kernel SHAP
Description: Efficient implementation of Kernel SHAP, see Lundberg and Lee (2017),
and Covert and Lee (2021) <http://proceedings.mlr.press/v130/covert21a>.
For models with up to eight features, the results are exact regarding the
selected background data. Otherwise, an almost exact hybrid algorithm
involving iterative sampling is used. The package plays well together
with meta-learning packages like 'tidymodels', 'caret' or 'mlr3'.
Visualizations can be done using the R package 'shapviz'.
Author: Michael Mayer [aut, cre],
David Watson [aut],
Przemyslaw Biecek [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between kernelshap versions 0.3.7 dated 2023-05-17 and 0.3.8 dated 2023-09-23
DESCRIPTION | 13 - MD5 | 24 +-- NEWS.md | 16 ++ R/exact.R | 71 ++++++---- R/kernelshap.R | 60 +++++---- R/sampling.R | 10 - R/utils.R | 178 ++++++++++++++++++--------- README.md | 25 ++- man/kernelshap.Rd | 35 +++-- tests/testthat/test-kernelshap-multioutput.R | 26 +-- tests/testthat/test-kernelshap.R | 32 ++-- tests/testthat/test-methods.R | 2 tests/testthat/test-utils_etc.R | 70 +++++----- 13 files changed, 346 insertions(+), 216 deletions(-)
Title: Procedures for Gaussian and Non Gaussian Geostatistical (Large)
Data Analysis
Description: Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) simulation and inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Covariance functions for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. See the URL for the papers associ [...truncated...]
Author: Moreno Bevilacqua [aut, cre] ,
Victor Morales-Onate [aut] ,
Christian Caamano-Carrillo [aut]
Maintainer: Moreno Bevilacqua <moreno.bevilacqua89@gmail.com>
Diff between GeoModels versions 1.1.2 dated 2023-09-08 and 1.1.3 dated 2023-09-23
DESCRIPTION | 8 - MD5 | 42 +++--- R/GeoCV.R | 267 ++++++++++++++++++++++------------------- R/GeoCompositeLik.r | 3 R/GeoCompositeLik2.R | 7 - R/GeoCovmatrix.r | 2 R/GeoFit.r | 12 + R/GeoFit2.R | 7 - R/GeoIndCompositeLik2.R | 3 R/GeoNeighborhood.R | 9 - R/GeoQQ.R | 9 - R/GeoResiduals.r | 2 R/GeoSim.r | 8 + R/GeoSimapprox.r | 45 ++++-- R/Geovarestbootstrap.R | 10 + R/Utility.r | 3 man/GeoCovmatrix.Rd | 12 + man/GeoSim.Rd | 9 - man/GeoSimapprox.Rd | 3 src/CompositeLikelihoodCond2.c | 21 +-- src/CorrelationFunction.c | 59 ++++----- src/Distributions.c | 22 ++- 22 files changed, 319 insertions(+), 244 deletions(-)
Title: Spherical k-Means Clustering
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a fixed-point
algorithm and an interface to the CLUTO vcluster program.
Author: Kurt Hornik [aut, cre] ,
Ingo Feinerer [aut] ,
Martin Kober [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between skmeans versions 0.2-15 dated 2023-01-31 and 0.2-16 dated 2023-09-23
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/skmeans.R | 26 +++++++++++++------------- build/partial.rdb |binary 4 files changed, 19 insertions(+), 19 deletions(-)
Title: Cluster Ensembles
Description: CLUster Ensembles.
Author: Kurt Hornik [aut, cre] ,
Walter Boehm [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between clue versions 0.3-64 dated 2023-01-31 and 0.3-65 dated 2023-09-23
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 2 +- R/medoid.R | 2 +- R/predict.R | 4 ++-- build/partial.rdb |binary build/vignette.rds |binary data/CKME.rda |binary data/Cassini.rda |binary data/GVME.rda |binary data/GVME_Consensus.rda |binary data/Kinship82.rda |binary data/Kinship82_Consensus.rda |binary data/Phonemes.rda |binary inst/doc/clue.pdf |binary man/cl_consensus.Rd | 2 +- 16 files changed, 23 insertions(+), 23 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-29 0.2.2
2019-09-13 0.2.1
2018-12-03 0.2.0
2018-07-19 0.1.0
Title: Generating Funky Heatmaps for Data Frames
Description: Allows generating heatmap-like visualisations for benchmark data
frames. Funky heatmaps can be fine-tuned by providing annotations of the
columns and rows, which allows assigning multiple palettes or geometries
or grouping rows and columns together in categories.
Saelens et al. (2019) <doi:10.1038/s41587-019-0071-9>.
Author: Robrecht Cannoodt [aut, cre] ,
Wouter Saelens [aut]
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between funkyheatmap versions 0.4.0 dated 2023-08-29 and 0.5.0 dated 2023-09-23
DESCRIPTION | 6 MD5 | 54 +++---- NAMESPACE | 2 NEWS.md | 9 + R/calculate_geom_positions.R | 77 +++++----- R/create_legends.R | 119 +++++++--------- R/funky_heatmap.R | 27 ++- R/is_color.R |only R/make_geom_data_processor.R | 88 +++++++---- R/position_arguments.R | 2 R/scale_minmax.R | 8 + R/score_to_funky_rectangle.R | 12 - R/verify_column_info.R | 75 ++++++++-- R/verify_legends.R | 77 ++++++++-- R/verify_palettes.R | 1 build/partial.rdb |binary data/scib_summary.rda |binary inst/doc/mtcars.html | 2 inst/doc/scIB.R | 145 ++++++++++++------- inst/doc/scIB.Rmd | 152 +++++++++++++------- inst/doc/scIB.html | 316 +++++++++++++++++++++++-------------------- man/funky_heatmap.Rd | 20 ++ man/position_arguments.Rd | 2 man/scale_minmax.Rd |only man/verify_column_groups.Rd | 10 + man/verify_column_info.Rd | 10 + man/verify_legends.Rd | 20 ++ man/verify_palettes.Rd | 10 + vignettes/scIB.Rmd | 152 +++++++++++++------- 29 files changed, 884 insertions(+), 512 deletions(-)
Title: Multivariate Menu for Radiant: Business Analytics using R and
Shiny
Description: The Radiant Multivariate menu includes interfaces for perceptual
mapping, factor analysis, cluster analysis, and conjoint analysis. The
application extends the functionality in 'radiant.data'.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.multivariate versions 1.6.0 dated 2023-09-11 and 1.6.1 dated 2023-09-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/testthat/test_stats.R | 2 +- 4 files changed, 12 insertions(+), 8 deletions(-)
More information about radiant.multivariate at CRAN
Permanent link
Title: Methods to Create Hierarchical Age Length Keys for Age
Assignment
Description: Provides methods for implementing hierarchical age length keys
to estimate fish ages from lengths using data borrowing. Users can create
hierarchical age length keys and use them to assign ages given length.
Author: Paul Frater [aut, cre]
Maintainer: Paul Frater <paul.frater@wisconsin.gov>
Diff between halk versions 0.0.3 dated 2023-07-07 and 0.0.4 dated 2023-09-23
halk-0.0.3/halk/R/fit_age_model.R |only halk-0.0.3/halk/man/fit_age_model.Rd |only halk-0.0.4/halk/DESCRIPTION | 6 halk-0.0.4/halk/MD5 | 38 +-- halk-0.0.4/halk/NAMESPACE | 3 halk-0.0.4/halk/R/data.R | 2 halk-0.0.4/halk/R/make_halk.R |only halk-0.0.4/halk/R/predict_ages.R | 12 - halk-0.0.4/halk/R/utils.R | 197 +---------------- halk-0.0.4/halk/inst/doc/halk.Rmd | 19 + halk-0.0.4/halk/inst/doc/halk.html | 68 +++-- halk-0.0.4/halk/man/assign_ages.Rd | 6 halk-0.0.4/halk/man/assign_alk_attributes.Rd | 2 halk-0.0.4/halk/man/assign_na_age.Rd |only halk-0.0.4/halk/man/make_alk.Rd | 2 halk-0.0.4/halk/man/make_halk.Rd | 4 halk-0.0.4/halk/man/spp_levels.Rd | 2 halk-0.0.4/halk/man/wb_spp_data.Rd | 2 halk-0.0.4/halk/tests/testthat/test-alk-fitting.R | 8 halk-0.0.4/halk/tests/testthat/test-alk-sample-sizes.R | 18 - halk-0.0.4/halk/tests/testthat/test-utils.R | 4 halk-0.0.4/halk/vignettes/halk.Rmd | 19 + 22 files changed, 135 insertions(+), 277 deletions(-)