Title: Segmentation of Graph-Based Signals
Description: Perform segmentation of graph-based signals. Assume a noisy observation
of a signal two values correspond to vertices on a graph. Assume the true
value of the signal is piece-wise constant (where each 'piece' is a
connected subgraph). The main function, agraph(), computes the
segmentation of the signal. The package also includes a wrapper around the competing
method flsa() (from package 'flsa').
More information about this method in Goepp and van de Kassteele (2022)
"Graph-Based Spatial Segmentation of
Health-Related Areal Data" <doi:10.48550/arXiv.2206.06752>.
Author: Vivien Goepp [aut, cre]
Maintainer: Vivien Goepp <vivien.goepp@gmail.com>
Diff between graphseg versions 0.1.0 dated 2023-05-02 and 0.1.1 dated 2023-10-03
graphseg-0.1.0/graphseg/man/graphseg.Rd |only graphseg-0.1.1/graphseg/DESCRIPTION | 8 +-- graphseg-0.1.1/graphseg/MD5 | 18 ++++--- graphseg-0.1.1/graphseg/NEWS.md |only graphseg-0.1.1/graphseg/R/graphseg-package.R | 12 ++-- graphseg-0.1.1/graphseg/R/main.R | 1 graphseg-0.1.1/graphseg/README.md | 59 ++++++++---------------- graphseg-0.1.1/graphseg/man/agraph.Rd | 14 ++--- graphseg-0.1.1/graphseg/man/figure |only graphseg-0.1.1/graphseg/man/flsa_graph.Rd | 4 - graphseg-0.1.1/graphseg/man/graphseg-package.Rd |only graphseg-0.1.1/graphseg/man/utrecht_district.Rd | 6 +- 12 files changed, 54 insertions(+), 68 deletions(-)
Title: Sparse Multiple Canonical Correlation Network Analysis Tool
Description: A canonical correlation based framework (SmCCNet) designed for the construction of phenotype-specific multi-omics networks. This framework adeptly integrates single or multiple omics data types along with a quantitative or binary phenotype of interest. It offers a streamlined setup process that can be tailored manually or configured automatically, ensuring a flexible and user-friendly experience.
Author: Weixuan Liu [aut, cre],
Yonghua Zhuang [aut, cre],
W. Jenny Shi [aut, cre],
Thao Vu [aut],
Iain Konigsberg [aut],
Katherine Pratte [aut],
Laura Saba [aut],
Katerina Kechris [aut]
Maintainer: Weixuan Liu <weixuan.liu@cuanschutz.edu>
Diff between SmCCNet versions 2.0.0 dated 2023-10-02 and 2.0.1 dated 2023-10-03
DESCRIPTION | 6 ++--- MD5 | 16 +++++++-------- inst/doc/SmCCNet_Vignette_AutoSmCCNet.pdf |binary inst/doc/SmCCNet_Vignette_MultiOmics.Rmd | 30 ++++++++++++++--------------- inst/doc/SmCCNet_Vignette_MultiOmics.pdf |binary inst/doc/SmCCNet_Vignette_SingleOmics.Rmd | 4 +-- inst/doc/SmCCNet_Vignette_SingleOmics.pdf |binary vignettes/SmCCNet_Vignette_MultiOmics.Rmd | 30 ++++++++++++++--------------- vignettes/SmCCNet_Vignette_SingleOmics.Rmd | 4 +-- 9 files changed, 45 insertions(+), 45 deletions(-)
Title: Accessing Data from the 'RegCensusAPI'
Description: Allowing users to access data from the 'RegCensusAPI'. The 'RegCensusAPI' is an API client that connects to the 'RegData' regulatory restrictions data by the 'Mercatus Center' at 'George Mason University'. 'RegData' uses machine learning algorithms to quantify the number of regulatory restrictions in a jurisdiction. You can find out more about 'RegData' from 'QuantGov website' <https://www.quantgov.org>.
Author: Jonathan Nelson [aut, cre],
Thurston Powers [aut],
Aayush Gadia [aut],
Mercatus Center [cph, fnd]
Maintainer: Jonathan Nelson <jnelson@mercatus.gmu.edu>
Diff between regcensus versions 1.0.0 dated 2023-09-29 and 1.0.1 dated 2023-10-03
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NEWS.md | 8 ++++---- 3 files changed, 11 insertions(+), 11 deletions(-)
Title: Country Data with Names, Capitals, Currencies, Populations,
Time, Languages and so on
Description: Obtain information about countries around the globe. Information for names, states, languages, time, capitals, currency and many more. Data source are 'Wikipedia' <https://www.wikipedia.org>, 'TimeAndDate' <https://www.timeanddate.com> and 'CountryCode' <https://countrycode.org>.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between r2country versions 2.0.2.3.0 dated 2023-09-05 and 2.0.2.3.1 dated 2023-10-03
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 6 +++++- R/lapply.R | 23 +++++++++++++---------- README.md | 9 +++++++++ data/city_time.rda |binary inst/doc/r2country_r_introduction.html | 4 ++-- 7 files changed, 38 insertions(+), 22 deletions(-)
Title: Fitting Ising Models Using the ELasso Method
Description: This network estimation procedure eLasso, which is based on the Ising model, combines l1-regularized logistic regression with model selection based on the Extended Bayesian Information Criterion (EBIC). EBIC is a fit measure that identifies relevant relationships between variables. The resulting network consists of variables as nodes and relevant relationships as edges. Can deal with binary data.
Author: Claudia van Borkulo, Sacha Epskamp; with contributions from Alexander Robitzsch and Mihai Alexandru Constantin
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between IsingFit versions 0.3.1 dated 2016-09-07 and 0.4 dated 2023-10-03
IsingFit-0.3.1/IsingFit/R/ComparableNetworks.R |only IsingFit-0.4/IsingFit/DESCRIPTION | 11 - IsingFit-0.4/IsingFit/MD5 | 11 - IsingFit-0.4/IsingFit/NEWS |only IsingFit-0.4/IsingFit/R/IsingFit.R | 211 ++++++++++++++----------- IsingFit-0.4/IsingFit/README.md |only IsingFit-0.4/IsingFit/man/isingfit-package.rd | 6 IsingFit-0.4/IsingFit/man/isingfit.rd | 9 - 8 files changed, 146 insertions(+), 102 deletions(-)
Title: Fourier Transform Textural Ordination
Description: A tool to use a principal component analysis on radially averaged
two dimensional Fourier spectra to characterize image texture. The method
within the context of ecology was first described by Couteron et al. (2005)
<doi:10.1111/j.1365-2664.2005.01097.x> and expanded upon by
Solorzano et al. (2018) <doi:10.1117/1.JRS.12.036006>
using a moving window approach.
Author: Koen Hufkens [aut, cre] ,
Jonathan V. Solorzano [ctb],
BlueGreen Labs [cph, fnd]
Maintainer: Koen Hufkens <koen.hufkens@gmail.com>
Diff between foto versions 1.0.0 dated 2019-01-17 and 1.1 dated 2023-10-03
DESCRIPTION | 50 +++---- MD5 | 33 ++-- NAMESPACE | 2 R/foto.R | 298 ++++++++++++++++++++++-------------------- R/foto_batch.R |only R/normalize.r | 1 R/rspectrum.R | 95 +++++++------ build/vignette.rds |binary inst/doc/foto-vignette.R | 57 +++++--- inst/doc/foto-vignette.Rmd | 66 +++++++-- inst/doc/foto-vignette.html | 311 ++++++++++++++++++++++++++++---------------- inst/extdata/yangambi.png |binary inst/extdata/yangambi_2.png |only man/foto.Rd | 48 ++++-- man/foto_batch.Rd |only man/normalize.Rd | 4 man/rspectrum.Rd | 9 - tests/testthat/test_foto.R | 38 ++++- vignettes/foto-vignette.Rmd | 66 +++++++-- 19 files changed, 667 insertions(+), 411 deletions(-)
Title: Edit an 'Antares' Simulation
Description: Edit an 'Antares' simulation before running it : create new areas, links, thermal
clusters or binding constraints or edit existing ones. Update 'Antares' general & optimization settings.
'Antares' is an open source power system generator, more information available here : <https://antares-simulator.org/>.
Author: Tatiana Vargas [aut, cre],
Frederic Breant [aut],
Victor Perrier [aut],
Baptiste Seguinot [ctb],
Benoit Thieurmel [ctb],
Titouan Robert [ctb],
Jalal-Edine Zawam [ctb],
Etienne Sanchez [ctb],
Janus De Bondt [ctb],
Assil Mansouri [ctb],
Abdallah Mahoud [...truncated...]
Maintainer: Tatiana Vargas <tatiana.vargas@rte-france.com>
Diff between antaresEditObject versions 0.5.1 dated 2023-04-06 and 0.6.0 dated 2023-10-03
antaresEditObject-0.5.1/antaresEditObject/man/create-cluster.Rd |only antaresEditObject-0.5.1/antaresEditObject/man/edit-cluster.Rd |only antaresEditObject-0.5.1/antaresEditObject/man/remove-cluster.Rd |only antaresEditObject-0.6.0/antaresEditObject/DESCRIPTION | 16 antaresEditObject-0.6.0/antaresEditObject/MD5 | 143 - antaresEditObject-0.6.0/antaresEditObject/NAMESPACE | 9 antaresEditObject-0.6.0/antaresEditObject/NEWS.md | 51 antaresEditObject-0.6.0/antaresEditObject/R/API-utils.R | 18 antaresEditObject-0.6.0/antaresEditObject/R/ST.R |only antaresEditObject-0.6.0/antaresEditObject/R/createArea.R | 191 - antaresEditObject-0.6.0/antaresEditObject/R/createCluster.R | 76 antaresEditObject-0.6.0/antaresEditObject/R/createClusterST.R |only antaresEditObject-0.6.0/antaresEditObject/R/createLink.R | 16 antaresEditObject-0.6.0/antaresEditObject/R/createStudy.R | 36 antaresEditObject-0.6.0/antaresEditObject/R/editArea.R | 18 antaresEditObject-0.6.0/antaresEditObject/R/editCluster.R | 27 antaresEditObject-0.6.0/antaresEditObject/R/editClusterST.R |only antaresEditObject-0.6.0/antaresEditObject/R/editLink.R | 19 antaresEditObject-0.6.0/antaresEditObject/R/playlist.R | 12 antaresEditObject-0.6.0/antaresEditObject/R/removeArea.R | 44 antaresEditObject-0.6.0/antaresEditObject/R/removeCluster.R | 96 antaresEditObject-0.6.0/antaresEditObject/R/removeLink.R | 13 antaresEditObject-0.6.0/antaresEditObject/R/scenarioBuilder.R | 155 + antaresEditObject-0.6.0/antaresEditObject/R/updateAdequacySettings.R | 16 antaresEditObject-0.6.0/antaresEditObject/R/writeHydroValues.R | 730 +++++- antaresEditObject-0.6.0/antaresEditObject/R/writeInputTS.R | 176 + antaresEditObject-0.6.0/antaresEditObject/README.md | 5 antaresEditObject-0.6.0/antaresEditObject/build/vignette.rds |binary antaresEditObject-0.6.0/antaresEditObject/inst/doc/Antares_new_features_v860.R |only antaresEditObject-0.6.0/antaresEditObject/inst/doc/Antares_new_features_v860.Rmd |only antaresEditObject-0.6.0/antaresEditObject/inst/doc/Antares_new_features_v860.html |only antaresEditObject-0.6.0/antaresEditObject/inst/doc/antaresEditObject.R | 2 antaresEditObject-0.6.0/antaresEditObject/inst/doc/antaresEditObject.Rmd | 2 antaresEditObject-0.6.0/antaresEditObject/inst/doc/antaresEditObject.html | 4 antaresEditObject-0.6.0/antaresEditObject/inst/doc/api-variant-management.R | 2 antaresEditObject-0.6.0/antaresEditObject/inst/doc/api-variant-management.Rmd | 2 antaresEditObject-0.6.0/antaresEditObject/inst/doc/api-variant-management.html | 12 antaresEditObject-0.6.0/antaresEditObject/inst/doc/renewables-energy-sources.R | 2 antaresEditObject-0.6.0/antaresEditObject/inst/doc/renewables-energy-sources.Rmd | 2 antaresEditObject-0.6.0/antaresEditObject/inst/doc/renewables-energy-sources.html | 4 antaresEditObject-0.6.0/antaresEditObject/inst/doc/scenario-builder.R | 2 antaresEditObject-0.6.0/antaresEditObject/inst/doc/scenario-builder.Rmd | 2 antaresEditObject-0.6.0/antaresEditObject/inst/doc/scenario-builder.html | 18 antaresEditObject-0.6.0/antaresEditObject/man/activateST.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/add_week_number_column_to_ts.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/check_consistency_reservoir_values.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/check_mingen_vs_hydro_storage.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/check_mingen_vs_maxpower.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/createCluster.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/createClusterST.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/create_referential_series_type.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/deleteStudy.Rd | 4 antaresEditObject-0.6.0/antaresEditObject/man/editCluster.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/editClusterST.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/fill_empty_hydro_ini_file.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/fill_empty_hydro_ts_file.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/get_default_hydro_ini_values.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/get_type_check_mingen_vs_hydrostorage.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/get_type_check_mingen_vs_hydrostorage_to_trigger.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/get_type_check_mingen_vs_maxpower_to_trigger.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/list_pollutants_values.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/removeCluster.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/replicate_missing_ts.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/rollback_to_previous_data.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/scenario-builder.Rd | 34 antaresEditObject-0.6.0/antaresEditObject/man/storage_values_default.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/updateAdequacySettings.Rd | 9 antaresEditObject-0.6.0/antaresEditObject/man/writeHydroValues.Rd | 10 antaresEditObject-0.6.0/antaresEditObject/man/writeIniHydro.Rd |only antaresEditObject-0.6.0/antaresEditObject/man/writeInputTS.Rd | 27 antaresEditObject-0.6.0/antaresEditObject/tests/testthat.R | 3 antaresEditObject-0.6.0/antaresEditObject/tests/testthat/helper_init.R | 16 antaresEditObject-0.6.0/antaresEditObject/tests/testthat/test-ST.R |only antaresEditObject-0.6.0/antaresEditObject/tests/testthat/test-createArea.R | 166 + antaresEditObject-0.6.0/antaresEditObject/tests/testthat/test-createCluster.R | 65 antaresEditObject-0.6.0/antaresEditObject/tests/testthat/test-createClusterST.R |only antaresEditObject-0.6.0/antaresEditObject/tests/testthat/test-createLink.R | 142 + antaresEditObject-0.6.0/antaresEditObject/tests/testthat/test-createStudy.R | 24 antaresEditObject-0.6.0/antaresEditObject/tests/testthat/test-editCluster.R | 62 antaresEditObject-0.6.0/antaresEditObject/tests/testthat/test-editClusterST.R |only antaresEditObject-0.6.0/antaresEditObject/tests/testthat/test-scenarioBuilder.R | 207 + antaresEditObject-0.6.0/antaresEditObject/tests/testthat/test-updateAdequacyPatch.R | 49 antaresEditObject-0.6.0/antaresEditObject/tests/testthat/test-writeHydroValues.R | 1206 +++++++++- antaresEditObject-0.6.0/antaresEditObject/tests/testthat/test-writeInputTS.R | 484 +++- antaresEditObject-0.6.0/antaresEditObject/vignettes/Antares_new_features_v860.Rmd |only antaresEditObject-0.6.0/antaresEditObject/vignettes/antaresEditObject.Rmd | 2 antaresEditObject-0.6.0/antaresEditObject/vignettes/api-variant-management.Rmd | 2 antaresEditObject-0.6.0/antaresEditObject/vignettes/renewables-energy-sources.Rmd | 2 antaresEditObject-0.6.0/antaresEditObject/vignettes/scenario-builder.Rmd | 2 antaresEditObject-0.6.0/antaresEditObject/vignettes/schemas |only 90 files changed, 3993 insertions(+), 444 deletions(-)
More information about antaresEditObject at CRAN
Permanent link
Title: Minimal Interface of the C++ 'MixtComp' Library for Mixture
Models with Heterogeneous and (Partially) Missing Data
Description: Mixture Composer <https://github.com/modal-inria/MixtComp> is a project to build mixture models with
heterogeneous data sets and partially missing data management.
It includes models for real, categorical, counting, functional and ranking data.
This package contains the minimal R interface of the C++ 'MixtComp' library.
Author: Vincent Kubicki [aut],
Christophe Biernacki [aut],
Quentin Grimonprez [aut, cre],
Serge Iovleff [ctb],
Matthieu Marbac-Lourdelle [ctb],
Étienne Goffinet [ctb],
Patrick Wieschollek [ctb] ,
Tobias Wood [ctb] ,
Julien Vandaele [ctb]
Maintainer: Quentin Grimonprez <quentingrim@yahoo.fr>
Diff between RMixtCompIO versions 4.0.10 dated 2023-05-07 and 4.0.11 dated 2023-10-03
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS | 3 +++ src/lib/LinAlg/ConstIterator.h | 3 ++- src/lib/LinAlg/Iterator.h | 16 ++++++++-------- 5 files changed, 22 insertions(+), 18 deletions(-)
Title: Probability Theory for Selecting Candidates in Plant Breeding
Description: Use probability theory under the Bayesian framework for calculating the risk of selecting candidates in a multi-environment context [Dias et al. (2022) <doi:10.1007/s00122-022-04041-y>]. Contained are functions used to fit a Bayesian multi-environment model (based on the available presets), extract posterior values and maximum posterior values, compute the variance components, check the model’s convergence, and calculate the probabilities. For both across and within-environments scopes, the package computes the probability of superior performance and the pairwise probability of superior performance. Furthermore, the probability of superior stability and the pairwise probability of superior stability across environments is estimated. A joint probability of superior performance and stability is also provided.
Author: Saulo Chaves [aut, cre] ,
Kaio Dias [aut, cph] ,
Matheus Krause [aut]
Maintainer: Saulo Chaves <saulo.chaves@ufv.br>
Diff between ProbBreed versions 1.0.2 dated 2023-07-06 and 1.0.3 dated 2023-10-03
ProbBreed-1.0.2/ProbBreed/R/recod.R |only ProbBreed-1.0.2/ProbBreed/man/recod.Rd |only ProbBreed-1.0.3/ProbBreed/DESCRIPTION | 6 ProbBreed-1.0.3/ProbBreed/MD5 | 22 ProbBreed-1.0.3/ProbBreed/NAMESPACE | 2 ProbBreed-1.0.3/ProbBreed/R/bayes_met.R | 2711 ++++++++++++++++++++--- ProbBreed-1.0.3/ProbBreed/R/extr_outs.R | 163 - ProbBreed-1.0.3/ProbBreed/R/prob_sup.R | 3193 +++++++++++++++++----------- ProbBreed-1.0.3/ProbBreed/README.md | 27 ProbBreed-1.0.3/ProbBreed/build/partial.rdb |binary ProbBreed-1.0.3/ProbBreed/man/bayes_met.Rd | 13 ProbBreed-1.0.3/ProbBreed/man/extr_outs.Rd | 33 ProbBreed-1.0.3/ProbBreed/man/prob_sup.Rd | 75 13 files changed, 4565 insertions(+), 1680 deletions(-)
Title: Relationship Matrices for Diploid and Autopolyploid Species
Description: Computation of A (pedigree), G (genomic-base), and H (A corrected
by G) relationship matrices for diploid and autopolyploid species. Several methods
are implemented considering additive and non-additive models.
Author: Rodrigo Amadeu [aut, cre],
Luis Ferrao [aut, ctb],
Catherine Cellon [ctb],
Leticia Lara [ctb],
Marcio Resende [ctb],
Ivone Oliveira [ctb],
Patricio Munoz [ctb],
Augusto Garcia [ctb]
Maintainer: Rodrigo Amadeu <rramadeu@gmail.com>
Diff between AGHmatrix versions 2.1.3 dated 2023-08-16 and 2.1.4 dated 2023-10-03
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/Amatrix.R | 18 ++++++++++++++++-- README.md | 5 ++++- inst/doc/Tutorial_AGHmatrix.html | 6 +++--- 5 files changed, 30 insertions(+), 13 deletions(-)
Title: Genotyping Triploids (or Diploids) from Luminescence Data
Description: Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids.
Two main functions: Run_Clustering() that regroups individuals with a same genotype based on proximity and
Run_Genotyping() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().
Author: Julien Roche [aut, cre],
Florence Phocas [aut],
Mathieu Besson [aut],
Pierre Patrice [aut],
Marc Vandeputte [aut],
Francois Allal [aut],
Pierrick Haffray [aut]
Maintainer: Julien Roche <jjm.roche@gmail.com>
Diff between GenoTriplo versions 1.0.2 dated 2023-09-06 and 1.0.3 dated 2023-10-03
DESCRIPTION | 6 MD5 | 10 R/function_GenoTot_pop_dif.R | 1080 +++++++++++++++++++++--------------------- R/function_GenoTot_pop_same.R | 424 ++++++++-------- R/function_run_clustering.R | 2 man/Run_Clustering.Rd | 2 6 files changed, 762 insertions(+), 762 deletions(-)
More information about syntenyPlotteR at CRAN
Permanent link
Title: Economics and Pricing Tools
Description: Functions to aid in micro and macro economic analysis and handling of price and
currency data. Includes extraction of relevant inflation and exchange rate data from World Bank
API, data cleaning/parsing, and standardisation. Inflation adjustment
calculations as found in Principles of Macroeconomics by Gregory Mankiw et al (2014). Current
and historical end of day exchange rates for 171 currencies from the European Central Bank
Statistical Data Warehouse (2020) <https://sdw.ecb.europa.eu/curConverter.do>.
Author: Steve Condylios [aut, cre],
Bruno Mioto [ctb],
Bryan Shalloway [ctb]
Maintainer: Steve Condylios <steve.condylios@gmail.com>
Diff between priceR versions 0.1.67 dated 2022-09-15 and 1.0.0 dated 2023-10-03
DESCRIPTION | 10 - MD5 | 16 +- NAMESPACE | 1 R/currencies.R | 225 +++++++++++++++++++++++++----- R/format.R | 31 ++-- README.md | 102 ++++++++----- man/append_exchangeratehost_access_key.Rd |only man/exchange_rate_latest.Rd | 13 + man/format_currency.Rd | 4 tests/working |only 10 files changed, 300 insertions(+), 102 deletions(-)
Title: Quadratic Programming Solver using the 'OSQP' Library
Description: Provides bindings to the 'OSQP' solver. The 'OSQP' solver is a numerical optimization package or solving convex quadratic programs written in 'C' and based on the alternating direction method of multipliers. See <arXiv:1711.08013> for details.
Author: Bartolomeo Stellato [aut, ctb, cph],
Goran Banjac [aut, ctb, cph],
Paul Goulart [aut, ctb, cph],
Stephen Boyd [aut, ctb, cph],
Eric Anderson [ctb],
Vineet Bansal [aut, ctb],
Balasubramanian Narasimhan [cre, ctb]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between osqp versions 0.6.0.8 dated 2023-01-31 and 0.6.3 dated 2023-10-03
osqp-0.6.0.8/osqp/inst/26ce409b_fixes |only osqp-0.6.0.8/osqp/src/osqp_sources/appveyor.yml |only osqp-0.6.0.8/osqp/src/osqp_sources/ci |only osqp-0.6.0.8/osqp/src/osqp_sources/docs |only osqp-0.6.0.8/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/tests |only osqp-0.6.0.8/osqp/src/osqp_sources/tests |only osqp-0.6.3/osqp/DESCRIPTION | 16 osqp-0.6.3/osqp/MD5 | 198 ++-------- osqp-0.6.3/osqp/NEWS.md | 7 osqp-0.6.3/osqp/R/osqp.R | 28 - osqp-0.6.3/osqp/R/params.R | 44 -- osqp-0.6.3/osqp/R/sparse.R |only osqp-0.6.3/osqp/README.md | 8 osqp-0.6.3/osqp/configure | 2 osqp-0.6.3/osqp/inst/58f00bd_fixes |only osqp-0.6.3/osqp/man/osqp.Rd | 7 osqp-0.6.3/osqp/man/osqpSettings.Rd | 5 osqp-0.6.3/osqp/src/Makevars | 2 osqp-0.6.3/osqp/src/Makevars.win | 2 osqp-0.6.3/osqp/src/osqp_solve_interface.cpp | 6 osqp-0.6.3/osqp/src/osqp_sources/CHANGELOG.md | 44 +- osqp-0.6.3/osqp/src/osqp_sources/CMakeLists.txt | 42 +- osqp-0.6.3/osqp/src/osqp_sources/LICENSE | 2 osqp-0.6.3/osqp/src/osqp_sources/README.md | 11 osqp-0.6.3/osqp/src/osqp_sources/configure/cmake/FindR.cmake | 2 osqp-0.6.3/osqp/src/osqp_sources/configure/version.h.in |only osqp-0.6.3/osqp/src/osqp_sources/include/CMakeLists.txt | 1 osqp-0.6.3/osqp/src/osqp_sources/include/constants.h | 9 osqp-0.6.3/osqp/src/osqp_sources/include/glob_opts.h | 38 + osqp-0.6.3/osqp/src/osqp_sources/include/types.h | 2 osqp-0.6.3/osqp/src/osqp_sources/include/version.h |only osqp-0.6.3/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso_interface.c | 2 osqp-0.6.3/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso_loader.c | 6 osqp-0.6.3/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso_loader.h | 2 osqp-0.6.3/osqp/src/osqp_sources/lin_sys/direct/qdldl/amd/include/SuiteSparse_config.h | 3 osqp-0.6.3/osqp/src/osqp_sources/lin_sys/direct/qdldl/amd/src/SuiteSparse_config.c | 8 osqp-0.6.3/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_interface.c | 9 osqp-0.6.3/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/CHANGELOG.md | 5 osqp-0.6.3/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/CMakeLists.txt | 6 osqp-0.6.3/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/README.md | 23 + osqp-0.6.3/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/configure/qdldl_types.h.in | 5 osqp-0.6.3/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/include/qdldl.h | 6 osqp-0.6.3/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/src/qdldl.c | 70 +-- osqp-0.6.3/osqp/src/osqp_sources/src/auxil.c | 34 - osqp-0.6.3/osqp/src/osqp_sources/src/osqp.c | 17 osqp-0.6.3/osqp/src/osqp_sources/src/util.c | 55 +- osqp-0.6.3/osqp/src/qdldl_types_R.h | 11 osqp-0.6.3/osqp/tests/testthat/test-params.R |only 48 files changed, 370 insertions(+), 368 deletions(-)
Title: Interact with the Maxar MGP Streaming API
Description: This grants the functionality of the Maxar Geospatial Platform (MGP) Streaming API. It can search for images using the WFS method. It can Download images using WMS WMTS. It can also Download a full resolution image.
Author: Nathan Carr
Maintainer: Nathan Carr <nathan.carr@maxar.com>
Diff between mgpStreamingSDK versions 0.1.0 dated 2023-06-23 and 0.2.0 dated 2023-10-03
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/interface.R | 14 +++++++++----- inst/doc/config-file.html | 12 ++++++------ inst/doc/download_image.html | 6 +++--- inst/doc/get_rull_resolution.html | 10 +++++----- inst/doc/search.html | 8 ++++---- man/Interface.Rd | 1 - 8 files changed, 37 insertions(+), 34 deletions(-)
More information about mgpStreamingSDK at CRAN
Permanent link
Title: Automated Cleaning of Occurrence Records from Biological
Collections
Description: Automated flagging of common spatial and temporal
errors in biological and paleontological collection data, for the use
in conservation, ecology and paleontology. Includes automated tests to
easily flag (and exclude) records assigned to country or province
centroid, the open ocean, the headquarters of the Global Biodiversity
Information Facility, urban areas or the location of biodiversity
institutions (museums, zoos, botanical gardens, universities).
Furthermore identifies per species outlier coordinates, zero
coordinates, identical latitude/longitude and invalid coordinates.
Also implements an algorithm to identify data sets with a significant
proportion of rounded coordinates. Especially suited for large data
sets. The reference for the methodology is: Zizka et al. (2019)
<doi:10.1111/2041-210X.13152>.
Author: Alexander Zizka [aut, cre],
Daniele Silvestro [ctb],
Tobias Andermann [ctb],
Josue Azevedo [ctb],
Camila Duarte Ritter [ctb],
Daniel Edler [ctb],
Harith Farooq [ctb],
Andrei Herdean [ctb],
Maria Ariza [ctb],
Ruud Scharn [ctb],
Sten Svanteson [ctb],
N [...truncated...]
Maintainer: Alexander Zizka <zizka.alexander@gmail.com>
Diff between CoordinateCleaner versions 2.0-20 dated 2021-10-21 and 3.0 dated 2023-10-03
CoordinateCleaner-2.0-20/CoordinateCleaner/vignettes/Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd.orig |only CoordinateCleaner-3.0/CoordinateCleaner/DESCRIPTION | 42 CoordinateCleaner-3.0/CoordinateCleaner/MD5 | 198 - CoordinateCleaner-3.0/CoordinateCleaner/NAMESPACE | 179 - CoordinateCleaner-3.0/CoordinateCleaner/NEWS.md | 446 +-- CoordinateCleaner-3.0/CoordinateCleaner/R/CoordinateCleaner-package.R | 303 +- CoordinateCleaner-3.0/CoordinateCleaner/R/cc_aohi.R |only CoordinateCleaner-3.0/CoordinateCleaner/R/cc_cap.R | 328 +- CoordinateCleaner-3.0/CoordinateCleaner/R/cc_cen.R | 321 +- CoordinateCleaner-3.0/CoordinateCleaner/R/cc_coun.R | 238 - CoordinateCleaner-3.0/CoordinateCleaner/R/cc_dupl.R | 124 CoordinateCleaner-3.0/CoordinateCleaner/R/cc_equ.R | 117 CoordinateCleaner-3.0/CoordinateCleaner/R/cc_gbif.R | 258 - CoordinateCleaner-3.0/CoordinateCleaner/R/cc_inst.R | 383 +- CoordinateCleaner-3.0/CoordinateCleaner/R/cc_iucn.R | 282 +- CoordinateCleaner-3.0/CoordinateCleaner/R/cc_outl.R | 741 ++--- CoordinateCleaner-3.0/CoordinateCleaner/R/cc_sea.R | 309 +- CoordinateCleaner-3.0/CoordinateCleaner/R/cc_urb.R | 218 - CoordinateCleaner-3.0/CoordinateCleaner/R/cc_val.R | 132 CoordinateCleaner-3.0/CoordinateCleaner/R/cc_zero.R | 140 - CoordinateCleaner-3.0/CoordinateCleaner/R/cd_ddmm.R | 407 +- CoordinateCleaner-3.0/CoordinateCleaner/R/cd_round.R | 796 ++--- CoordinateCleaner-3.0/CoordinateCleaner/R/cf_age.R | 590 ++-- CoordinateCleaner-3.0/CoordinateCleaner/R/cf_equal.R | 124 CoordinateCleaner-3.0/CoordinateCleaner/R/cf_outl.R | 17 CoordinateCleaner-3.0/CoordinateCleaner/R/cf_range.R | 434 +-- CoordinateCleaner-3.0/CoordinateCleaner/R/clean_coordinates.R | 848 +++--- CoordinateCleaner-3.0/CoordinateCleaner/R/clean_dataset.R | 434 +-- CoordinateCleaner-3.0/CoordinateCleaner/R/clean_fossils.R | 638 ++-- CoordinateCleaner-3.0/CoordinateCleaner/R/internal_clean_coordinate.R | 231 - CoordinateCleaner-3.0/CoordinateCleaner/R/internal_clean_dataset.R | 346 +- CoordinateCleaner-3.0/CoordinateCleaner/R/internal_write_pyrate.R | 14 CoordinateCleaner-3.0/CoordinateCleaner/R/methods.spatialvalid.R | 401 +- CoordinateCleaner-3.0/CoordinateCleaner/R/sysdata.rda |only CoordinateCleaner-3.0/CoordinateCleaner/R/write_pyrate.R | 521 +-- CoordinateCleaner-3.0/CoordinateCleaner/README.md | 200 - CoordinateCleaner-3.0/CoordinateCleaner/build/partial.rdb |only CoordinateCleaner-3.0/CoordinateCleaner/build/vignette.rds |binary CoordinateCleaner-3.0/CoordinateCleaner/data/aohi.rda |only CoordinateCleaner-3.0/CoordinateCleaner/data/buffland.rda |binary CoordinateCleaner-3.0/CoordinateCleaner/data/buffsea.rda |binary CoordinateCleaner-3.0/CoordinateCleaner/data/institutions.rda |binary CoordinateCleaner-3.0/CoordinateCleaner/inst/CITATION | 48 CoordinateCleaner-3.0/CoordinateCleaner/inst/WORDLIST | 272 - CoordinateCleaner-3.0/CoordinateCleaner/inst/doc/Cleaning_GBIF_data_with_CoordinateCleaner.R |only CoordinateCleaner-3.0/CoordinateCleaner/inst/doc/Cleaning_GBIF_data_with_CoordinateCleaner.Rmd | 930 +++--- CoordinateCleaner-3.0/CoordinateCleaner/inst/doc/Cleaning_GBIF_data_with_CoordinateCleaner.html | 1228 +++++--- CoordinateCleaner-3.0/CoordinateCleaner/inst/doc/Cleaning_PBDB_fossils_with_CoordinateCleaner.R |only CoordinateCleaner-3.0/CoordinateCleaner/inst/doc/Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd | 858 +++--- CoordinateCleaner-3.0/CoordinateCleaner/inst/doc/Cleaning_PBDB_fossils_with_CoordinateCleaner.html | 1247 +++++---- CoordinateCleaner-3.0/CoordinateCleaner/inst/doc/Comparison_other_software.Rmd | 88 CoordinateCleaner-3.0/CoordinateCleaner/inst/doc/Comparison_other_software.html | 778 +++-- CoordinateCleaner-3.0/CoordinateCleaner/inst/doc/Using_custom_gazetteers.R |only CoordinateCleaner-3.0/CoordinateCleaner/inst/doc/Using_custom_gazetteers.Rmd | 199 - CoordinateCleaner-3.0/CoordinateCleaner/inst/doc/Using_custom_gazetteers.html | 689 +++-- CoordinateCleaner-3.0/CoordinateCleaner/man/CoordinateCleaner-package.Rd | 48 CoordinateCleaner-3.0/CoordinateCleaner/man/aohi.Rd |only CoordinateCleaner-3.0/CoordinateCleaner/man/buffland.Rd | 34 CoordinateCleaner-3.0/CoordinateCleaner/man/buffsea.Rd | 4 CoordinateCleaner-3.0/CoordinateCleaner/man/cc_aohi.Rd |only CoordinateCleaner-3.0/CoordinateCleaner/man/cc_cap.Rd | 197 - CoordinateCleaner-3.0/CoordinateCleaner/man/cc_cen.Rd | 212 - CoordinateCleaner-3.0/CoordinateCleaner/man/cc_coun.Rd | 200 - CoordinateCleaner-3.0/CoordinateCleaner/man/cc_dupl.Rd | 164 - CoordinateCleaner-3.0/CoordinateCleaner/man/cc_equ.Rd | 145 - CoordinateCleaner-3.0/CoordinateCleaner/man/cc_gbif.Rd | 176 - CoordinateCleaner-3.0/CoordinateCleaner/man/cc_inst.Rd | 218 - CoordinateCleaner-3.0/CoordinateCleaner/man/cc_iucn.Rd | 200 - CoordinateCleaner-3.0/CoordinateCleaner/man/cc_outl.Rd | 283 +- CoordinateCleaner-3.0/CoordinateCleaner/man/cc_sea.Rd | 193 - CoordinateCleaner-3.0/CoordinateCleaner/man/cc_urb.Rd | 164 - CoordinateCleaner-3.0/CoordinateCleaner/man/cc_val.Rd | 150 - CoordinateCleaner-3.0/CoordinateCleaner/man/cc_zero.Rd | 156 - CoordinateCleaner-3.0/CoordinateCleaner/man/cd_ddmm.Rd | 237 - CoordinateCleaner-3.0/CoordinateCleaner/man/cd_round.Rd | 259 - CoordinateCleaner-3.0/CoordinateCleaner/man/cf_age.Rd | 253 - CoordinateCleaner-3.0/CoordinateCleaner/man/cf_equal.Rd | 131 CoordinateCleaner-3.0/CoordinateCleaner/man/cf_outl.Rd | 255 - CoordinateCleaner-3.0/CoordinateCleaner/man/cf_range.Rd | 205 - CoordinateCleaner-3.0/CoordinateCleaner/man/clean_coordinates.Rd | 512 +-- CoordinateCleaner-3.0/CoordinateCleaner/man/clean_dataset.Rd | 265 - CoordinateCleaner-3.0/CoordinateCleaner/man/clean_fossils.Rd | 395 +- CoordinateCleaner-3.0/CoordinateCleaner/man/countryref.Rd | 89 CoordinateCleaner-3.0/CoordinateCleaner/man/institutions.Rd | 60 CoordinateCleaner-3.0/CoordinateCleaner/man/is.spatialvalid.Rd |only CoordinateCleaner-3.0/CoordinateCleaner/man/pbdb_example.Rd | 54 CoordinateCleaner-3.0/CoordinateCleaner/man/plot.spatialvalid.Rd | 148 - CoordinateCleaner-3.0/CoordinateCleaner/man/write_pyrate.Rd | 220 - CoordinateCleaner-3.0/CoordinateCleaner/tests/testthat.R | 8 CoordinateCleaner-3.0/CoordinateCleaner/tests/testthat/Rplots.pdf |only CoordinateCleaner-3.0/CoordinateCleaner/tests/testthat/test_coordinatelevel_functions.R | 521 +-- CoordinateCleaner-3.0/CoordinateCleaner/tests/testthat/test_datasetlevel_functions.R | 190 - CoordinateCleaner-3.0/CoordinateCleaner/tests/testthat/test_fossillevel_functions.R | 344 +- CoordinateCleaner-3.0/CoordinateCleaner/tests/testthat/test_wrapper_functions.R | 232 - CoordinateCleaner-3.0/CoordinateCleaner/vignettes/Cleaning_GBIF_data_with_CoordinateCleaner.Rmd | 930 +++--- CoordinateCleaner-3.0/CoordinateCleaner/vignettes/Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd | 858 +++--- CoordinateCleaner-3.0/CoordinateCleaner/vignettes/Comparison_other_software.Rmd | 88 CoordinateCleaner-3.0/CoordinateCleaner/vignettes/CoordinateCleaner.bib | 1372 +++++----- CoordinateCleaner-3.0/CoordinateCleaner/vignettes/Using_custom_gazetteers.Rmd | 199 - CoordinateCleaner-3.0/CoordinateCleaner/vignettes/apa.csl | 664 ++-- CoordinateCleaner-3.0/CoordinateCleaner/vignettes/gbif-clgbif11-1.png |binary CoordinateCleaner-3.0/CoordinateCleaner/vignettes/gbif-clgbif16-1.png |binary CoordinateCleaner-3.0/CoordinateCleaner/vignettes/gbif-clgbif17-1.png |binary CoordinateCleaner-3.0/CoordinateCleaner/vignettes/gbif-clgbif5-1.png |binary CoordinateCleaner-3.0/CoordinateCleaner/vignettes/gbif-clgbif6-1.png |binary CoordinateCleaner-3.0/CoordinateCleaner/vignettes/paleobioDB_angiosperms_PyRate.py |only CoordinateCleaner-3.0/CoordinateCleaner/vignettes/paleobioDB_angiosperms_TaxonList.txt |only 107 files changed, 14904 insertions(+), 13226 deletions(-)
More information about CoordinateCleaner at CRAN
Permanent link
Title: Specify 'OpenMx' Models with a 'lavaan'-Style Syntax
Description: Provides a 'lavaan'-like syntax for 'OpenMx' models. The syntax supports
definition variables, bounds, and parameter transformations. This allows for
latent growth curve models with person-specific measurement occasions, moderated
nonlinear factor analysis and much more.
Author: Jannik H. Orzek [aut, cre, cph]
Maintainer: Jannik H. Orzek <jannik.orzek@mailbox.org>
Diff between mxsem versions 0.0.5 dated 2023-08-11 and 0.0.8 dated 2023-10-03
DESCRIPTION | 10 MD5 | 145 NAMESPACE | 39 NEWS.md |only R/RcppExports.R | 100 R/check_all_fields.R | 66 R/check_modifier_for_algebra.R | 241 - R/extract_algebra_elements.R | 54 R/get_individual_algebra_results.R |only R/mxsem.R | 1050 ++--- R/mxsem_group_by.R |only R/parameters.R | 20 R/set_starting_values.R | 106 R/simulate_data.R | 198 - R/unicode_arrows.R | 34 README.md | 1486 +++---- build/vignette.rds |binary inst/doc/Latent-Growth-Curve.R | 122 inst/doc/Latent-Growth-Curve.Rmd | 282 - inst/doc/Latent-Growth-Curve.html | 1146 ++--- inst/doc/Moderated-Nonlinear-Factor-Analysis.Rmd | 886 ++-- inst/doc/Moderated-Nonlinear-Factor-Analysis.html | 1630 ++++---- inst/doc/Syntax.R | 12 inst/doc/Syntax.Rmd | 354 - inst/doc/Syntax.html | 798 ++-- inst/doc/create_parameter_table.R | 82 inst/doc/create_parameter_table.Rmd | 150 inst/doc/create_parameter_table.html | 970 ++--- man/check_all_fields.Rd | 36 man/check_modifier_for_algebra.Rd | 48 man/clean_syntax.Rd | 34 man/extract_algebra_elements.Rd | 40 man/find_model_name.Rd | 36 man/get_groups.Rd |only man/get_individual_algebra_results.Rd |only man/mxsem.Rd | 638 +-- man/mxsem_group_by.Rd |only man/parameter_table_rcpp.Rd | 78 man/parameters.Rd | 36 man/print.multi_group_parameters.Rd |only man/set_starting_values.Rd | 92 man/simulate_latent_growth_curve.Rd | 76 man/simulate_moderated_nonlinear_factor_analysis.Rd | 84 man/split_string_all.Rd | 40 man/summarize_multi_group_model.Rd |only man/unicode_directed.Rd | 28 man/unicode_undirected.Rd | 28 tests/testthat.R | 24 tests/testthat/test-CLPM.R | 308 - tests/testthat/test-Dianiska_2019.R | 70 tests/testthat/test-MIMIC.R | 50 tests/testthat/test-NA-warning.R | 28 tests/testthat/test-Political-Democracy.R | 63 tests/testthat/test-Schoemann-2015.R | 74 tests/testthat/test-check_all_fields.R | 108 tests/testthat/test-clean-syntax.R | 84 tests/testthat/test-create-parameter-table.R | 88 tests/testthat/test-definition_variable.R | 52 tests/testthat/test-extract_algebra.R | 16 tests/testthat/test-get_individual_algebras.R |only tests/testthat/test-implicit-transformations.R | 446 +- tests/testthat/test-incorrect-syntax.R | 84 tests/testthat/test-labeled-covariances.R | 86 tests/testthat/test-mnlfa.R | 68 tests/testthat/test-model_name.R | 160 tests/testthat/test-multi-group.R |only tests/testthat/test-parameters.R | 62 tests/testthat/test-parenting_religion.R | 194 - tests/testthat/test-scaling-with-labels.R | 226 - tests/testthat/test-set_starting_values.R | 72 tests/testthat/test-too-many-modifiers.R | 30 vignettes/Latent-Growth-Curve.Rmd | 282 - vignettes/Moderated-Nonlinear-Factor-Analysis.Rmd | 886 ++-- vignettes/Syntax.Rmd | 354 - vignettes/apa.csl | 3828 ++++++++++---------- vignettes/create_parameter_table.Rmd | 150 vignettes/figures/mnlfa.png |binary vignettes/figures/mnlfa_lS_1.png |only vignettes/mxsem.bib | 268 - 79 files changed, 9878 insertions(+), 9558 deletions(-)
Title: Tools for Handling Extraction of Features from Time Series
Description: Consolidates and calculates different sets of time-series features from multiple
'R' and 'Python' packages including 'Rcatch22' Henderson, T. (2021) <doi:10.5281/zenodo.5546815>,
'feasts' O'Hara-Wild, M., Hyndman, R., and Wang, E. (2021) <https://CRAN.R-project.org/package=feasts>,
'tsfeatures' Hyndman, R., Kang, Y., Montero-Manso, P., Talagala, T., Wang, E., Yang, Y., and O'Hara-Wild, M. (2020)
<https://CRAN.R-project.org/package=tsfeatures>, 'tsfresh' Christ, M., Braun, N., Neuffer, J.,
and Kempa-Liehr A.W. (2018) <doi:10.1016/j.neucom.2018.03.067>, 'TSFEL' Barandas, M., et al. (2020)
<doi:10.1016/j.softx.2020.100456>, and 'Kats' Facebook Infrastructure Data Science (2021)
<https://facebookresearch.github.io/Kats/>. Provides a standardised workflow from feature calculation to
feature processing, machine learning classification procedures, and the production of statistical graphics.
Author: Trent Henderson [cre, aut],
Annie Bryant [ctb]
Maintainer: Trent Henderson <then6675@uni.sydney.edu.au>
Diff between theft versions 0.5.3 dated 2023-08-11 and 0.5.4 dated 2023-10-03
DESCRIPTION | 8 - MD5 | 59 +++++------ NAMESPACE | 225 ++++++++++++++++++++++---------------------- R/calculate_interval.R | 6 - R/filter_duplicates.R | 182 +++++++++++++++++++++++++---------- R/normalise.R | 32 ++++-- R/reduce_dims.R | 48 ++++++++- R/rescalers.R | 36 +++++-- R/theft.R | 3 R/tsfeature_classifier.R | 77 +++++++++------ README.md | 4 inst/doc/theft.R | 8 - inst/doc/theft.Rmd | 34 +++--- inst/doc/theft.html | 138 ++++++++++++-------------- man/filter_duplicates.Rd | 46 ++++---- man/filter_good_features.Rd | 48 ++++----- man/find_good_features.Rd | 44 ++++---- man/fit_models.Rd | 56 +++++----- man/get_rescale_vals.Rd | 40 +++---- man/make_title.Rd | 40 +++---- man/maxabs_scaler.Rd |only man/normalise.Rd | 6 - man/reduce_dims.Rd | 9 + man/resample_data.Rd | 60 +++++------ man/resampled_ttest.Rd | 66 ++++++------ man/rescale_zscore.Rd | 44 ++++---- man/select_stat_cols.Rd | 52 +++++----- man/stat_test.Rd | 86 ++++++++-------- man/theft.Rd | 1 man/tsfeature_classifier.Rd | 113 ++++++++++------------ vignettes/theft.Rmd | 34 +++--- 31 files changed, 890 insertions(+), 715 deletions(-)
Title: Statistical Patterns in Genomic Sequences
Description: A collection of statistical hypothesis tests and other
techniques for identifying certain spatial relationships/phenomena in
DNA sequences. In particular, it provides tests and graphical methods for determining
whether or not DNA sequences comply with Chargaff's second parity rule
or exhibit purine-pyrimidine parity. In addition, there are functions for
efficiently simulating discrete state space Markov chains and testing
arbitrary symbolic sequences of symbols for the presence of first-order
Markovianness.
Also, it has functions for counting words/k-mers (and cylinder patterns) in
arbitrary symbolic sequences. Functions which take a DNA sequence as input
can handle sequences stored as SeqFastadna objects from the 'seqinr' package.
Author: Andrew Hart [aut, cre],
Servet Martinez [aut],
Universidad de Chile [cph],
INRIA-Chile [cph]
Maintainer: Andrew Hart <ahart@dim.uchile.cl>
Diff between spgs versions 1.0-3 dated 2019-12-06 and 1.0-4 dated 2023-10-03
DESCRIPTION | 14 +++---- MD5 | 84 ++++++++++++++++++++++----------------------- R/MarkovChains.R | 2 - R/ag.test.R | 2 - R/agct.test.R | 2 - R/chargaff0.test.R | 2 - R/chargaff1.test.R | 2 - R/chargaff2.test.R | 2 - build/partial.rdb |binary inst/CITATION | 2 - man/ag.test.Rd | 6 +-- man/agct.test.Rd | 8 ++-- man/array2vector.Rd | 2 - man/chargaff.gibbs.test.Rd | 6 +-- man/chargaff0.test.Rd | 8 ++-- man/chargaff1.test.Rd | 8 ++-- man/chargaff2.test.Rd | 8 ++-- man/chisq.unif.test.Rd | 2 - man/complement.Rd | 2 - man/cylinder.counts.Rd | 2 - man/diffsign.test.Rd | 2 - man/diid.disturbance.Rd | 2 - man/diid.test.Rd | 6 +-- man/disambiguate.Rd | 2 - man/estimateMarkovChain.Rd | 2 - man/ks.unif.test.Rd | 2 - man/lb.test.Rd | 2 - man/markov.disturbance.Rd | 2 - man/markov.test.Rd | 6 +-- man/oligoProfile.Rd | 2 - man/pair.counts.Rd | 2 - man/quadruple.counts.Rd | 2 - man/rank.test.Rd | 2 - man/rcspr2mat.Rd | 4 +- man/reverseComplement.Rd | 2 - man/rstochmat.Rd | 2 - man/rstochvec.Rd | 2 - man/simulateMarkovChain.Rd | 2 - man/spgs-package.Rd | 8 ++-- man/triple.counts.Rd | 2 - man/turningpoint.test.Rd | 6 +-- src/spgs.c | 11 +++++ src/spgs.h | 12 +----- 43 files changed, 126 insertions(+), 123 deletions(-)
Title: Colocalisation Tests of Two Genetic Traits
Description: Performs the colocalisation tests described in
Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>,
Wallace (2020) <doi:10.1371/journal.pgen.1008720>,
Wallace (2021) <doi:10.1371/journal.pgen.1009440>.
Author: Chris Wallace [aut, cre],
Claudia Giambartolomei [aut],
Vincent Plagnol [ctb]
Maintainer: Chris Wallace <cew54@cam.ac.uk>
Diff between coloc versions 5.2.2 dated 2023-05-12 and 5.2.3 dated 2023-10-03
DESCRIPTION | 8 ++++---- MD5 | 25 +++++++++++++------------ NAMESPACE | 2 ++ NEWS.md | 3 +++ R/claudia.R | 5 ++++- R/susie.R | 41 +++++++++++++++++++++++++++++++++-------- inst/doc/a01_intro.html | 4 ++-- inst/doc/a02_data.html | 10 +++++----- inst/doc/a03_enumeration.html | 6 +++--- inst/doc/a04_sensitivity.html | 8 ++++---- inst/doc/a05_conditioning.html | 10 +++++----- inst/doc/a06_SuSiE.html | 12 ++++++------ man/annotate_susie.Rd |only man/process.dataset.Rd | 5 ++++- 14 files changed, 88 insertions(+), 51 deletions(-)
Title: Expectation-Maximization Binary Clustering
Description: Unsupervised, multivariate, binary clustering for meaningful annotation of data, taking into account the uncertainty in the data. A specific constructor for trajectory analysis in movement ecology yields behavioural annotation of trajectories based on estimated local measures of velocity and turning angle, eventually with solar position covariate as a daytime indicator, ("Expectation-Maximization Binary Clustering for Behavioural Annotation").
Author: Joan Garriga, John R.B. Palmer, Aitana Oltra, Frederic Bartumeus
Maintainer: Joan Garriga <jgarriga@ceab.csic.es>
Diff between EMbC versions 2.0.3 dated 2019-12-16 and 2.0.4 dated 2023-10-03
EMbC-2.0.3/EMbC/vignettes/imgs/pkml01.png |only EMbC-2.0.4/EMbC/DESCRIPTION | 14 ++-- EMbC-2.0.4/EMbC/MD5 | 63 ++++++++++---------- EMbC-2.0.4/EMbC/NAMESPACE | 2 EMbC-2.0.4/EMbC/NEWS.md | 6 + EMbC-2.0.4/EMbC/R/constructors.R | 4 - EMbC-2.0.4/EMbC/R/functions.R | 2 EMbC-2.0.4/EMbC/R/methods.R | 8 +- EMbC-2.0.4/EMbC/build/vignette.rds |binary EMbC-2.0.4/EMbC/inst/doc/EMbC_qckref.R | 62 ++++++++++---------- EMbC-2.0.4/EMbC/inst/doc/EMbC_qckref.Rmd | 92 +++++++++++++++--------------- EMbC-2.0.4/EMbC/inst/doc/EMbC_qckref.pdf |binary EMbC-2.0.4/EMbC/man/bkml.Rd | 4 - EMbC-2.0.4/EMbC/man/bmap.Rd | 21 +++++- EMbC-2.0.4/EMbC/man/chkp.Rd | 5 - EMbC-2.0.4/EMbC/man/cnfm.Rd | 1 EMbC-2.0.4/EMbC/man/expth.Rd | 4 - EMbC-2.0.4/EMbC/man/lblp.Rd | 1 EMbC-2.0.4/EMbC/man/lkhp.Rd | 1 EMbC-2.0.4/EMbC/man/pkml.Rd | 7 -- EMbC-2.0.4/EMbC/man/pmap.Rd | 21 +++++- EMbC-2.0.4/EMbC/man/rlbl.Rd | 1 EMbC-2.0.4/EMbC/man/sct3.Rd | 1 EMbC-2.0.4/EMbC/man/sctr.Rd | 7 -- EMbC-2.0.4/EMbC/man/smth.Rd | 1 EMbC-2.0.4/EMbC/man/stbc.Rd | 11 ++- EMbC-2.0.4/EMbC/man/stts.Rd | 1 EMbC-2.0.4/EMbC/man/varp.Rd | 1 EMbC-2.0.4/EMbC/man/view.Rd | 7 -- EMbC-2.0.4/EMbC/man/x2d.Rd | 4 - EMbC-2.0.4/EMbC/src/RcppExports.cpp | 5 + EMbC-2.0.4/EMbC/vignettes/EMbC_qckref.Rmd | 92 +++++++++++++++--------------- EMbC-2.0.4/EMbC/vignettes/biblio.bib | 13 ++-- 33 files changed, 243 insertions(+), 219 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 10.1 dated 2023-08-26 and 10.2 dated 2023-10-03
DESCRIPTION | 8 +-- MD5 | 42 ++++++++++---------- NAMESPACE | 1 R/Dependence.R | 2 R/Multivariate_Regression.R | 20 +++++---- R/NNS_Distance.R | 36 ++++++++++------- R/NNS_VAR.R | 30 +------------- R/Nowcast.R | 2 R/Regression.R | 26 ++---------- R/Uni_SD_Routines.R | 4 - R/gvload.R | 6 +- README.md | 4 - inst/doc/NNSvignette_Clustering_and_Regression.html | 2 inst/doc/NNSvignette_Forecasting.R | 10 ++-- inst/doc/NNSvignette_Forecasting.Rmd | 10 ++-- inst/doc/NNSvignette_Forecasting.html | 10 ++-- inst/doc/NNSvignette_Partial_Moments.R | 8 +++ inst/doc/NNSvignette_Partial_Moments.Rmd | 8 +++ inst/doc/NNSvignette_Partial_Moments.html | 18 ++++++-- man/NNS.dep.Rd | 2 vignettes/NNSvignette_Forecasting.Rmd | 10 ++-- vignettes/NNSvignette_Partial_Moments.Rmd | 8 +++ 22 files changed, 135 insertions(+), 132 deletions(-)
Title: Log-Gaussian Cox Process
Description: Spatial and spatio-temporal modelling of point patterns using the
log-Gaussian Cox process. Bayesian inference for spatial, spatiotemporal,
multivariate and aggregated point processes using Markov chain Monte Carlo. See Benjamin M. Taylor, Tilman M. Davies, Barry S. Rowlingson, Peter J. Diggle (2015) <doi:10.18637/jss.v063.i07>.
Author: Benjamin M. Taylor, Tilman M. Davies, Barry S. Rowlingson, Peter J.
Diggle. Additional code contributions from Edzer Pebesma, Dominic Schumacher.
Maintainer: Benjamin M. Taylor <benjamin.taylor.software@gmail.com>
Diff between lgcp versions 1.8-2 dated 2022-11-22 and 2.0 dated 2023-10-03
DESCRIPTION | 18 +++++++------- MD5 | 33 ++++++++++++++----------- NAMESPACE | 16 +++++++----- R/AggregateSpatialOnlyPlusParameters.R | 15 ++++++++--- R/arealMethods.R | 12 ++++----- R/geometryHandling.R | 3 +- R/lgcp.R | 5 ++- R/lgcpMethods.R | 42 +++++++++++++++++++++++++++++---- R/lgcpStructures.R | 33 +++++++++++++++++++++---- build/partial.rdb |binary build/vignette.rds |binary data/wpopdata.rda |binary data/wtowncoords.rda |binary data/wtowns.rda |binary inst/CITATION | 40 +++++++++++++++++++++---------- inst/doc/lgcp.pdf |binary man/gDisjoint_wg.Rd |only man/gIntersects_pg.Rd |only man/gTouches_wg.Rd |only 19 files changed, 151 insertions(+), 66 deletions(-)
Title: Landscape Metrics for Categorical Map Patterns
Description: Calculates landscape metrics for categorical landscape patterns in
a tidy workflow. 'landscapemetrics' reimplements the most common metrics from
'FRAGSTATS' (<https://www.fragstats.org/>) and new ones from the current
literature on landscape metrics. This package supports 'terra' SpatRaster objects
as input arguments. It further provides utility functions to visualize patches,
select metrics and building blocks to develop new metrics.
Author: Maximilian H.K. Hesselbarth [aut, cre]
,
Marco Sciaini [aut] ,
Jakub Nowosad [aut] ,
Sebastian Hanss [aut] ,
Laura J. Graham [ctb] ,
Jeffrey Hollister [ctb] ,
Kimberly A. With [ctb] ,
Florian Prive [ctb] function),
Project Nayuki [ctb] ,
Matt Strima [...truncated...]
Maintainer: Maximilian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between landscapemetrics versions 1.5.7 dated 2023-06-22 and 2.0.0 dated 2023-10-03
landscapemetrics-1.5.7/landscapemetrics/R/scale_sample.R |only landscapemetrics-1.5.7/landscapemetrics/R/scale_window.R |only landscapemetrics-1.5.7/landscapemetrics/R/tmp.R |only landscapemetrics-1.5.7/landscapemetrics/R/zzz.R |only landscapemetrics-1.5.7/landscapemetrics/data/fragstats_class_augusta_nlcd.rda |only landscapemetrics-1.5.7/landscapemetrics/data/fragstats_class_landscape.rda |only landscapemetrics-1.5.7/landscapemetrics/data/fragstats_class_podlasie.rda |only landscapemetrics-1.5.7/landscapemetrics/data/fragstats_landscape_augusta_nlcd.rda |only landscapemetrics-1.5.7/landscapemetrics/data/fragstats_landscape_landscape.rda |only landscapemetrics-1.5.7/landscapemetrics/data/fragstats_landscape_podlasie.rda |only landscapemetrics-1.5.7/landscapemetrics/data/fragstats_patch_augusta_nlcd.rda |only landscapemetrics-1.5.7/landscapemetrics/data/fragstats_patch_landscape.rda |only landscapemetrics-1.5.7/landscapemetrics/data/fragstats_patch_podlasie.rda |only landscapemetrics-1.5.7/landscapemetrics/man/fragstats_class_augusta_nlcd.Rd |only landscapemetrics-1.5.7/landscapemetrics/man/fragstats_class_landscape.Rd |only landscapemetrics-1.5.7/landscapemetrics/man/fragstats_class_podlasie.Rd |only landscapemetrics-1.5.7/landscapemetrics/man/fragstats_landscape_augusta_nlcd.Rd |only landscapemetrics-1.5.7/landscapemetrics/man/fragstats_landscape_landscape.Rd |only landscapemetrics-1.5.7/landscapemetrics/man/fragstats_landscape_podlasie.Rd |only landscapemetrics-1.5.7/landscapemetrics/man/fragstats_patch_augusta_nlcd.Rd |only landscapemetrics-1.5.7/landscapemetrics/man/fragstats_patch_landscape.Rd |only landscapemetrics-1.5.7/landscapemetrics/man/fragstats_patch_podlasie.Rd |only landscapemetrics-1.5.7/landscapemetrics/man/scale_sample.Rd |only landscapemetrics-1.5.7/landscapemetrics/man/scale_window.Rd |only landscapemetrics-1.5.7/landscapemetrics/src/Makevars.win |only landscapemetrics-1.5.7/landscapemetrics/tests/testthat/helper-brick.R |only landscapemetrics-1.5.7/landscapemetrics/tests/testthat/helper-landscapes.R |only landscapemetrics-1.5.7/landscapemetrics/tests/testthat/helper-points.R |only landscapemetrics-1.5.7/landscapemetrics/tests/testthat/test-different-classes.R |only landscapemetrics-1.5.7/landscapemetrics/tests/testthat/test-lsm-p-nca.R |only landscapemetrics-1.5.7/landscapemetrics/tests/testthat/test-scale-sample.R |only landscapemetrics-1.5.7/landscapemetrics/tests/testthat/test-scale-window.R |only landscapemetrics-1.5.7/landscapemetrics/tests/testthat/test_fragstats.R |only landscapemetrics-2.0.0/landscapemetrics/DESCRIPTION | 27 landscapemetrics-2.0.0/landscapemetrics/MD5 | 1056 ++++------ landscapemetrics-2.0.0/landscapemetrics/NAMESPACE | 15 landscapemetrics-2.0.0/landscapemetrics/NEWS.md | 18 landscapemetrics-2.0.0/landscapemetrics/R/calculate_correlation.R | 5 landscapemetrics-2.0.0/landscapemetrics/R/calculate_lsm.R | 19 landscapemetrics-2.0.0/landscapemetrics/R/check_landscape.R | 7 landscapemetrics-2.0.0/landscapemetrics/R/construct_buffer.R | 145 - landscapemetrics-2.0.0/landscapemetrics/R/data.R | 90 landscapemetrics-2.0.0/landscapemetrics/R/data_info.R | 7 landscapemetrics-2.0.0/landscapemetrics/R/extract_lsm.R | 178 - landscapemetrics-2.0.0/landscapemetrics/R/get_adjacencies.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/get_boundaries.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/get_centroids.R | 19 landscapemetrics-2.0.0/landscapemetrics/R/get_circumscribingcircle.R | 18 landscapemetrics-2.0.0/landscapemetrics/R/get_nearestneighbour.R | 7 landscapemetrics-2.0.0/landscapemetrics/R/get_patches.R | 8 landscapemetrics-2.0.0/landscapemetrics/R/get_unique_values.R | 12 landscapemetrics-2.0.0/landscapemetrics/R/landscape_as_list.R | 31 landscapemetrics-2.0.0/landscapemetrics/R/landscapemetrics-package.R | 51 landscapemetrics-2.0.0/landscapemetrics/R/list_lsm.R | 7 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_ai.R | 38 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_area_cv.R | 16 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_area_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_area_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_ca.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_cai_cv.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_cai_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_cai_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_circle_cv.R | 13 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_circle_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_circle_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_clumpy.R | 82 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_cohesion.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_contig_cv.R | 12 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_contig_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_contig_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_core_cv.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_core_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_core_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_cpland.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_dcad.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_dcore_cv.R | 16 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_dcore_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_dcore_sd.R | 12 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_division.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_ed.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_enn_cv.R | 16 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_enn_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_enn_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_frac_cv.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_frac_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_frac_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_gyrate_cv.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_gyrate_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_gyrate_sd.R | 13 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_iji.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_lpi.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_lsi.R | 37 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_mesh.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_ndca.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_nlsi.R | 22 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_np.R | 12 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_pafrac.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_para_cv.R | 16 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_para_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_para_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_pd.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_pladj.R | 29 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_pland.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_shape_cv.R | 22 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_shape_mn.R | 17 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_shape_sd.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_split.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_tca.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_c_te.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_ai.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_area_cv.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_area_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_area_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_cai_cv.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_cai_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_cai_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_circle_cv.R | 12 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_circle_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_circle_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_cohesion.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_condent.R | 5 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_contag.R | 16 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_contig_cv.R | 12 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_contig_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_contig_sd.R | 12 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_core_cv.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_core_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_core_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_dcad.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_dcore_cv.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_dcore_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_dcore_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_division.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_ed.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_enn_cv.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_enn_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_enn_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_ent.R | 5 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_frac_cv.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_frac_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_frac_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_gyrate_cv.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_gyrate_mn.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_gyrate_sd.R | 13 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_iji.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_joinent.R | 5 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_lpi.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_lsi.R | 25 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_mesh.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_msidi.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_msiei.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_mutinf.R | 5 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_ndca.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_np.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_pafrac.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_para_cv.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_para_mn.R | 12 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_para_sd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_pd.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_pladj.R | 12 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_pr.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_prd.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_relmutinf.R | 7 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_rpr.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_shape_cv.R | 21 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_shape_mn.R | 17 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_shape_sd.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_shdi.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_shei.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_sidi.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_siei.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_split.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_ta.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_tca.R | 10 landscapemetrics-2.0.0/landscapemetrics/R/lsm_l_te.R | 16 landscapemetrics-2.0.0/landscapemetrics/R/lsm_p_area.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_p_cai.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_p_circle.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_p_contig.R | 16 landscapemetrics-2.0.0/landscapemetrics/R/lsm_p_core.R | 16 landscapemetrics-2.0.0/landscapemetrics/R/lsm_p_enn.R | 12 landscapemetrics-2.0.0/landscapemetrics/R/lsm_p_frac.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_p_gyrate.R | 12 landscapemetrics-2.0.0/landscapemetrics/R/lsm_p_ncore.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/lsm_p_para.R | 14 landscapemetrics-2.0.0/landscapemetrics/R/lsm_p_perim.R | 20 landscapemetrics-2.0.0/landscapemetrics/R/lsm_p_shape.R | 52 landscapemetrics-2.0.0/landscapemetrics/R/matrix_to_raster.R | 51 landscapemetrics-2.0.0/landscapemetrics/R/pad_raster.R | 25 landscapemetrics-2.0.0/landscapemetrics/R/points_as_mat.R |only landscapemetrics-2.0.0/landscapemetrics/R/proj_info.R | 12 landscapemetrics-2.0.0/landscapemetrics/R/raster_to_points.R | 12 landscapemetrics-2.0.0/landscapemetrics/R/sample_lsm.R | 196 - landscapemetrics-2.0.0/landscapemetrics/R/show_cores.R | 37 landscapemetrics-2.0.0/landscapemetrics/R/show_correlation.R | 34 landscapemetrics-2.0.0/landscapemetrics/R/show_lsm.R | 9 landscapemetrics-2.0.0/landscapemetrics/R/show_patches.R | 43 landscapemetrics-2.0.0/landscapemetrics/R/spatialize_lsm.R | 38 landscapemetrics-2.0.0/landscapemetrics/R/sysdata.rda |binary landscapemetrics-2.0.0/landscapemetrics/R/unpad_raster.R | 15 landscapemetrics-2.0.0/landscapemetrics/R/window_lsm.R | 22 landscapemetrics-2.0.0/landscapemetrics/build/vignette.rds |binary landscapemetrics-2.0.0/landscapemetrics/data/augusta_nlcd.rda |binary landscapemetrics-2.0.0/landscapemetrics/data/landscape.rda |binary landscapemetrics-2.0.0/landscapemetrics/data/lsm_abbreviations_names.rda |binary landscapemetrics-2.0.0/landscapemetrics/data/podlasie_ccilc.rda |binary landscapemetrics-2.0.0/landscapemetrics/inst/doc/get_started.R | 34 landscapemetrics-2.0.0/landscapemetrics/inst/doc/get_started.Rmd | 64 landscapemetrics-2.0.0/landscapemetrics/inst/doc/get_started.html | 415 +-- landscapemetrics-2.0.0/landscapemetrics/man/augusta_nlcd.Rd | 2 landscapemetrics-2.0.0/landscapemetrics/man/calculate_correlation.Rd | 1 landscapemetrics-2.0.0/landscapemetrics/man/calculate_lsm.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/check_landscape.Rd | 5 landscapemetrics-2.0.0/landscapemetrics/man/construct_buffer.Rd | 27 landscapemetrics-2.0.0/landscapemetrics/man/data_info.Rd | 5 landscapemetrics-2.0.0/landscapemetrics/man/extract_lsm.Rd | 19 landscapemetrics-2.0.0/landscapemetrics/man/figures/README-unnamed-chunk-2-1.png |binary landscapemetrics-2.0.0/landscapemetrics/man/get_adjacencies.Rd | 12 landscapemetrics-2.0.0/landscapemetrics/man/get_boundaries.Rd | 5 landscapemetrics-2.0.0/landscapemetrics/man/get_centroids.Rd | 7 landscapemetrics-2.0.0/landscapemetrics/man/get_circumscribingcircle.Rd | 4 landscapemetrics-2.0.0/landscapemetrics/man/get_nearestneighbour.Rd | 3 landscapemetrics-2.0.0/landscapemetrics/man/get_patches.Rd | 6 landscapemetrics-2.0.0/landscapemetrics/man/get_unique_values.Rd | 8 landscapemetrics-2.0.0/landscapemetrics/man/landscape.Rd | 4 landscapemetrics-2.0.0/landscapemetrics/man/landscape_as_list.Rd | 17 landscapemetrics-2.0.0/landscapemetrics/man/landscapemetrics.Rd | 14 landscapemetrics-2.0.0/landscapemetrics/man/list_lsm.Rd | 7 landscapemetrics-2.0.0/landscapemetrics/man/lsm_abbreviations_names.Rd | 1 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_ai.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_area_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_area_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_area_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_ca.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_cai_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_cai_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_cai_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_circle_cv.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_circle_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_circle_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_clumpy.Rd | 12 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_cohesion.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_contig_cv.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_contig_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_contig_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_core_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_core_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_core_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_cpland.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_dcad.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_dcore_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_dcore_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_dcore_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_division.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_ed.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_enn_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_enn_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_enn_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_frac_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_frac_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_frac_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_gyrate_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_gyrate_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_gyrate_sd.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_iji.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_lpi.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_lsi.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_mesh.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_ndca.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_nlsi.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_np.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_pafrac.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_para_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_para_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_para_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_pd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_pladj.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_pland.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_shape_cv.Rd | 18 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_shape_mn.Rd | 17 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_shape_sd.Rd | 15 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_split.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_tca.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_c_te.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_ai.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_area_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_area_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_area_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_cai_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_cai_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_cai_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_circle_cv.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_circle_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_circle_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_cohesion.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_condent.Rd | 3 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_contag.Rd | 14 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_contig_cv.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_contig_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_contig_sd.Rd | 12 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_core_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_core_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_core_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_dcad.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_dcore_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_dcore_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_dcore_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_division.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_ed.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_enn_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_enn_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_enn_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_ent.Rd | 3 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_frac_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_frac_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_frac_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_gyrate_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_gyrate_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_gyrate_sd.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_iji.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_joinent.Rd | 3 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_lpi.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_lsi.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_mesh.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_msidi.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_msiei.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_mutinf.Rd | 3 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_ndca.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_np.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_pafrac.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_para_cv.Rd | 13 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_para_mn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_para_sd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_pd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_pladj.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_pr.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_prd.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_relmutinf.Rd | 3 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_rpr.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_shape_cv.Rd | 18 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_shape_mn.Rd | 17 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_shape_sd.Rd | 15 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_shdi.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_shei.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_sidi.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_siei.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_split.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_ta.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_tca.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_l_te.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_p_area.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_p_cai.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_p_circle.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_p_contig.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_p_core.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_p_enn.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_p_frac.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_p_gyrate.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_p_ncore.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_p_para.Rd | 10 landscapemetrics-2.0.0/landscapemetrics/man/lsm_p_perim.Rd | 12 landscapemetrics-2.0.0/landscapemetrics/man/lsm_p_shape.Rd | 19 landscapemetrics-2.0.0/landscapemetrics/man/matrix_to_raster.Rd | 12 landscapemetrics-2.0.0/landscapemetrics/man/pad_raster.Rd | 6 landscapemetrics-2.0.0/landscapemetrics/man/podlasie_ccilc.Rd | 2 landscapemetrics-2.0.0/landscapemetrics/man/points_as_mat.Rd |only landscapemetrics-2.0.0/landscapemetrics/man/proj_info.Rd | 6 landscapemetrics-2.0.0/landscapemetrics/man/raster_to_points.Rd | 5 landscapemetrics-2.0.0/landscapemetrics/man/sample_lsm.Rd | 46 landscapemetrics-2.0.0/landscapemetrics/man/show_cores.Rd | 2 landscapemetrics-2.0.0/landscapemetrics/man/show_correlation.Rd | 3 landscapemetrics-2.0.0/landscapemetrics/man/show_lsm.Rd | 2 landscapemetrics-2.0.0/landscapemetrics/man/show_patches.Rd | 2 landscapemetrics-2.0.0/landscapemetrics/man/spatialize_lsm.Rd | 3 landscapemetrics-2.0.0/landscapemetrics/man/unpad_raster.Rd | 3 landscapemetrics-2.0.0/landscapemetrics/man/window_lsm.Rd | 15 landscapemetrics-2.0.0/landscapemetrics/src/rcpp_get_coocurrence_matrix.cpp | 9 landscapemetrics-2.0.0/landscapemetrics/src/rcpp_get_coocurrence_matrix_diag.cpp | 9 landscapemetrics-2.0.0/landscapemetrics/src/rcpp_get_coocurrence_matrix_single.cpp | 9 landscapemetrics-2.0.0/landscapemetrics/src/rcpp_get_nearest_neighbor.cpp | 60 landscapemetrics-2.0.0/landscapemetrics/tests/testthat.R | 5 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/helper-testthat.R |only landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-calculate-lsm.R | 28 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-calculate_correlation.R | 4 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-check-landscape.R | 23 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-construct-buffer.R | 39 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-extract-lsm.R | 116 - landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-get-adjacencies.R | 24 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-get-boundaries.R | 40 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-get-centroids.R | 30 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-get-circumscribungcircle.R | 11 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-get-nearestneighbour.R | 12 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-get-patches.R | 25 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-get-unique-values.R | 44 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-landscape_as_list.R | 14 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-list-lsm.R | 24 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-ai.R | 23 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-area-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-area-mn.R | 11 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-area-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-ca.R | 17 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-cai-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-cai-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-cai-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-circle-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-circle-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-circle-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-clumpy.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-cohesion.R | 18 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-contig-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-contig-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-contig-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-core-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-core-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-core-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-cpland.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-dcad.R | 20 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-dcore_cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-dcore_mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-dcore_sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-division.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-ed.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-enn-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-enn-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-enn-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-frac-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-frac-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-frac-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-gyrate-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-gyrate-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-gyrate-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-iji.R | 20 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-lpi.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-lsi.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-mesh.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-ndca.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-nlsi.R | 20 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-np.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-pafrac.R | 24 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-para-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-para-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-para-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-pd.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-pladj.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-pland.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-shape-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-shape-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-shape-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-split.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-tca.R | 20 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-c-te.R | 24 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-ai.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-area-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-area-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-area-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-cai-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-cai-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-cai-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-circle-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-circle-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-circle-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-cohesion.R | 20 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-condent.R | 10 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-contag.R | 21 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-contig-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-contig-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-contig-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-core-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-core-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-core-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-dcad.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-dcore-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-dcore-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-dcore-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-division.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-ed.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-enn-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-enn-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-enn-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-ent.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-frac-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-frac-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-frac-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-gyrate-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-gyrate-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-gyrate-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-iji.R | 20 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-joinent.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-lpi.R | 20 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-lsi.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-mesh.R | 20 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-msidi.R | 21 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-msiei.R | 20 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-mutinf.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-ndca.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-np.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-pafrac.R | 20 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-para-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-para-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-para-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-pd.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-pladj.R | 20 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-pr.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-prd.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-relmutinf.R | 10 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-rpr.R | 10 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-shape-cv.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-shape-mn.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-shape-sd.R | 9 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-shdi.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-shei.R | 26 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-sidi.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-siei.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-split.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-ta.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-tca.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-l-te.R | 24 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-p-area.R | 18 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-p-cai.R | 20 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-p-circle.R | 38 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-p-contig.R | 18 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-p-core.R | 22 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-p-enn.R | 18 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-p-frac.R | 18 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-p-gyrate.R | 37 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-p-ncore.R |only landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-p-para.R | 21 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-p-perim.R | 22 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-lsm-p-shape.R | 19 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-matrix-to-raster.R | 34 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-options-landscapemetrics.R | 4 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-pad-raster.R | 31 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-points-as-matrix.R |only landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-raster-to-points.R | 28 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-rcpp-get-coocurrence-matrix.R | 111 - landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-rcpp-get-entropy.R | 11 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-rcpp_ccl.R | 2 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-rcpp_get_circle.R | 2 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-sample-lsm.R | 175 - landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-show-cores.R | 12 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-show-correlation.R | 2 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-show-lsm.R | 21 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-show-patches.R | 13 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-spatialize-lsm.R | 23 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-unique-values.R | 6 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-unpad-raster.R | 38 landscapemetrics-2.0.0/landscapemetrics/tests/testthat/test-window-lsm.R | 17 landscapemetrics-2.0.0/landscapemetrics/vignettes/get_started.Rmd | 64 548 files changed, 4341 insertions(+), 4884 deletions(-)
More information about landscapemetrics at CRAN
Permanent link
Title: Disaster Victim Identification
Description: Joint DNA-based disaster victim identification (DVI), as
described in Vigeland and Egeland (2021)
<doi:10.21203/rs.3.rs-296414/v1>. Identification is performed by
optimising the joint likelihood of all victim samples and reference
individuals. Individual identification probabilities, conditional on
all available information, are derived from the joint solution in the
form of posterior pairing probabilities. 'dvir' is part of the
'pedsuite' collection of packages for pedigree analysis.
Author: Magnus Dehli Vigeland [aut, cre]
,
Thore Egeland [aut]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between dvir versions 3.0.1 dated 2023-06-30 and 3.1.0 dated 2023-10-03
DESCRIPTION | 27 ++++++++------- MD5 | 39 ++++++++++++---------- NAMESPACE | 1 NEWS.md | 10 +++++ R/data.R | 4 +- R/dviData.R | 43 ++++++++++++++++++++++--- R/findExcluded.R | 85 ++++++++++++++++++++++++++++++++------------------ R/mergePM.R | 37 ++++++++++----------- R/plotDVI.R | 6 +-- R/plotUndisputed.R |only R/utils.R | 1 README.md | 9 ++--- inst |only man/directMatch.Rd | 12 ++----- man/dvir-package.Rd | 56 ++++++++++++++++---------------- man/findExcluded.Rd | 6 ++- man/getFamily.Rd | 50 ++++++++++++++--------------- man/icmp.Rd | 2 - man/mergePM.Rd | 12 ++----- man/planecrash.Rd | 2 - man/plotSolution.Rd | 4 +- man/plotUndisputed.Rd |only 22 files changed, 239 insertions(+), 167 deletions(-)
Title: Spatio-Temporal Modeling of Large Data Using a Spectral SPDE
Approach
Description: Functionality for spatio-temporal modeling of large data sets is provided. A Gaussian process in space and time is defined through a stochastic partial differential equation (SPDE). The SPDE is solved in the spectral space, and after discretizing in time and space, a linear Gaussian state space model is obtained. When doing inference, the main computational difficulty consists in evaluating the likelihood and in sampling from the full conditional of the spectral coefficients, or equivalently, the latent space-time process. In comparison to the traditional approach of using a spatio-temporal covariance function, the spectral SPDE approach is computationally advantageous. See Sigrist, Kuensch, and Stahel (2015) <doi:10.1111/rssb.12061> for more information on the methodology. This package aims at providing tools for two different modeling approaches. First, the SPDE based spatio-temporal model can be used as a component in a customized hierarchical Bayesian model (HBM). The functio [...truncated...]
Author: Fabio Sigrist, Hans R. Kuensch, Werner A. Stahel
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between spate versions 1.7.4 dated 2022-11-02 and 1.7.5 dated 2023-10-03
DESCRIPTION | 8 +++--- MD5 | 10 ++++---- build/vignette.rds |binary inst/CITATION | 4 +-- inst/doc/spate_tutorial.pdf |binary man/spate-package.Rd | 53 ++++++++++++++++++-------------------------- 6 files changed, 33 insertions(+), 42 deletions(-)
Title: Structural Equation Modeling and Confirmatory Network Analysis
Description: Multi-group (dynamical) structural equation models in combination with confirmatory network models from cross-sectional, time-series and panel data <doi:10.31234/osf.io/8ha93>. Allows for confirmatory testing and fit as well as exploratory model search.
Author: Sacha Epskamp
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between psychonetrics versions 0.11 dated 2023-06-05 and 0.11.5 dated 2023-10-03
DESCRIPTION | 6 +- MD5 | 38 +++++++-------- NEWS | 5 ++ R/02_algebrahelpers_checkJacobian.R | 2 R/05_MLestimator_expected_hessian_Ising.R | 11 ++++ R/22_ml_lvm_identify.R | 2 R/RcppExports.R | 8 +-- R/a_models_Ising.R | 25 ++++++++-- R/e_modelmodifications_fixpar.R | 10 ++-- R/e_modelmodifications_freepar.R | 11 ++-- R/e_modelmodifications_groupequal.R | 10 ++-- R/e_modelmodifications_groupfree.R | 10 ++-- R/h_modelsearch.R | 1 build/partial.rdb |binary data/Jonas.RData |binary man/Ising.Rd | 6 ++ src/21_Ising_helperfunctions.cpp | 75 ++++++++++++++++++++---------- src/21_Ising_helperfunctions.h | 6 +- src/21_Ising_prepare_cpp.cpp | 2 src/RcppExports.cpp | 18 ++++--- 20 files changed, 162 insertions(+), 84 deletions(-)
Title: Genotype-by-Environment Interaction in Polygenic Score Models
Description: A novel PRS model is introduced to enhance the prediction accuracy by utilising GxE effects. This package performs Genome Wide Association Studies (GWAS) and Genome Wide Environment Interaction Studies (GWEIS) using a discovery dataset. The package has the ability to obtain polygenic risk scores (PRSs) for a target sample. Finally it predicts the risk values of each individual in the target sample. Users have the choice of using existing models (Li et al., 2015) <doi:10.1093/annonc/mdu565>, (Pandis et al., 2013) <doi:10.1093/ejo/cjt054>, (Peyrot et al., 2018) <doi:10.1016/j.biopsych.2017.09.009> and (Song et al., 2022) <doi:10.1038/s41467-022-32407-9>, as well as newly proposed models for genomic risk prediction (refer to the URL for more details).
Author: Dovini Jayasinghe [aut, cre, cph],
Hong Lee [aut, cph],
Moksedul Momin [aut, cph]
Maintainer: Dovini Jayasinghe <dovini.jayasinghe@mymail.unisa.edu.au>
Diff between GxEprs versions 1.0 dated 2023-08-25 and 1.1 dated 2023-10-03
DESCRIPTION | 6 +++--- MD5 | 38 +++++++++++++++++++------------------- R/Bcov_discovery.R | 4 ++-- R/Bcov_target.R | 4 ++-- R/Bphe_discovery.R | 4 ++-- R/Bphe_target.R | 4 ++-- R/Qcov_discovery.R | 4 ++-- R/Qcov_target.R | 4 ++-- R/Qphe_discovery.R | 4 ++-- R/Qphe_target.R | 4 ++-- R/summary_permuted_binary.R | 4 ++-- R/summary_permuted_quantitative.R | 4 ++-- man/Bcov_discovery.Rd | 8 ++++---- man/Bcov_target.Rd | 8 ++++---- man/Bphe_discovery.Rd | 8 ++++---- man/Bphe_target.Rd | 8 ++++---- man/Qcov_discovery.Rd | 8 ++++---- man/Qcov_target.Rd | 8 ++++---- man/Qphe_discovery.Rd | 8 ++++---- man/Qphe_target.Rd | 8 ++++---- 20 files changed, 74 insertions(+), 74 deletions(-)
Title: Interactive Exploratory Data Analysis Tool
Description: Simplify your R data analysis and data visualization workflow by turning your data frame into an interactive 'Tableau'-like interface, leveraging the 'graphic-walker' JavaScript library and the 'htmlwidgets' package.
Author: Yue Yu [aut, cre] ,
Kanaries Data Inc. [cph, fnd]
Maintainer: Yue Yu <yue.yu@connect.ust.hk>
Diff between GWalkR versions 0.1.2 dated 2023-08-17 and 0.1.3 dated 2023-10-03
DESCRIPTION | 10 - MD5 | 10 - R/gwalkr.R | 12 + README.md | 13 + inst/htmlwidgets/lib/gwalkr/gwalkr-app.iife.js | 188 ++++++++++++++++++------- man/gwalkr.Rd | 13 + 6 files changed, 180 insertions(+), 66 deletions(-)
Title: 'grid' Pattern Grobs
Description: Provides 'grid' grobs that fill in a user-defined area with various patterns. Includes enhanced versions of the geometric and image-based patterns originally contained in the 'ggpattern' package as well as original 'pch', 'polygon_tiling', 'regular_polygon', 'rose', 'text', 'wave', and 'weave' patterns plus support for custom user-defined patterns.
Author: Mike FC [aut] ,
Trevor L Davis [aut, cre] ,
Thomas Lin Pedersen [ctb] copied from ggplot2)
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between gridpattern versions 1.0.2 dated 2022-11-07 and 1.1.0 dated 2023-10-03
gridpattern-1.0.2/gridpattern/R/guess_has_R_4.1_features.R |only gridpattern-1.1.0/gridpattern/DESCRIPTION | 12 gridpattern-1.1.0/gridpattern/LICENSE | 2 gridpattern-1.1.0/gridpattern/MD5 | 44 +- gridpattern-1.1.0/gridpattern/NAMESPACE | 1 gridpattern-1.1.0/gridpattern/NEWS.md | 22 + gridpattern-1.1.0/gridpattern/R/pattern-array-image.R | 6 gridpattern-1.1.0/gridpattern/R/pattern-array-magick.R | 2 gridpattern-1.1.0/gridpattern/R/pattern-array-placeholder.R | 3 gridpattern-1.1.0/gridpattern/R/pattern-array-plasma.R | 3 gridpattern-1.1.0/gridpattern/R/reset_image_cache.R |only gridpattern-1.1.0/gridpattern/R/standalone-guess_has_R4.1_features.R |only gridpattern-1.1.0/gridpattern/R/z_guess_has_R4.1_features_docs.R |only gridpattern-1.1.0/gridpattern/README.md | 2 gridpattern-1.1.0/gridpattern/build/vignette.rds |binary gridpattern-1.1.0/gridpattern/inst/doc/developing-patterns.R | 2 gridpattern-1.1.0/gridpattern/inst/doc/developing-patterns.html | 197 ---------- gridpattern-1.1.0/gridpattern/inst/doc/tiling.html | 197 ---------- gridpattern-1.1.0/gridpattern/man/grid.pattern_image.Rd | 6 gridpattern-1.1.0/gridpattern/man/grid.pattern_magick.Rd | 2 gridpattern-1.1.0/gridpattern/man/grid.pattern_placeholder.Rd | 5 gridpattern-1.1.0/gridpattern/man/grid.pattern_plasma.Rd | 3 gridpattern-1.1.0/gridpattern/man/guess_has_R4.1_features.Rd | 14 gridpattern-1.1.0/gridpattern/man/reset_image_cache.Rd |only gridpattern-1.1.0/gridpattern/tests/figs/array/plasma.png |only gridpattern-1.1.0/gridpattern/tests/testthat/test_array.R | 14 26 files changed, 101 insertions(+), 436 deletions(-)
Title: Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Description: Functions to automate downloading geospatial data available
from several federated data sources (mainly sources maintained by the
US Federal government). Currently, the package enables extraction from
seven datasets: The National Elevation Dataset digital elevation
models (1 and 1/3 arc-second; USGS); The National Hydrography Dataset
(USGS); The Soil Survey Geographic (SSURGO) database from the National
Cooperative Soil Survey (NCSS), which is led by the Natural Resources
Conservation Service (NRCS) under the USDA; the Global Historical
Climatology Network (GHCN), coordinated by National Climatic Data
Center at NOAA; the Daymet gridded estimates of daily weather
parameters for North America, version 3, available from the Oak Ridge
National Laboratory's Distributed Active Archive Center (DAAC); the
International Tree Ring Data Bank; and the National Land Cover
Database (NLCD).
Author: R. Kyle Bocinsky [aut, cre, cph],
Dylan Beaudette [ctb],
Scott Chamberlain [ctb, rev],
Jeffrey Hollister [ctb],
Julia Gustavsen [rev]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>
Diff between FedData versions 3.0.4 dated 2023-05-25 and 4.0.0 dated 2023-10-03
FedData-3.0.4/FedData/man/spdf_from_polygon.Rd |only FedData-4.0.0/FedData/DESCRIPTION | 18 FedData-4.0.0/FedData/MD5 | 88 - FedData-4.0.0/FedData/NAMESPACE | 5 FedData-4.0.0/FedData/NEWS.md | 11 FedData-4.0.0/FedData/R/DAYMET_FUNCTIONS.R | 62 - FedData-4.0.0/FedData/R/GHCN_FUNCTIONS.R | 144 +- FedData-4.0.0/FedData/R/ITRDB_FUNCTIONS.R | 47 FedData-4.0.0/FedData/R/NASS_FUNCTIONS.R | 52 FedData-4.0.0/FedData/R/NED_FUNCTIONS.R | 62 - FedData-4.0.0/FedData/R/NHD_FUNCTIONS.R | 22 FedData-4.0.0/FedData/R/NLCD_FUNCTIONS.R | 91 + FedData-4.0.0/FedData/R/PADUS_FUNCTIONS.R |only FedData-4.0.0/FedData/R/SSURGO_FUNCTIONS.R | 61 - FedData-4.0.0/FedData/R/UTILITY_FUNCTIONS.R | 68 - FedData-4.0.0/FedData/R/esri.R | 111 +- FedData-4.0.0/FedData/R/sysdata.rda |binary FedData-4.0.0/FedData/R/zzz.R |only FedData-4.0.0/FedData/README.md | 545 ---------- FedData-4.0.0/FedData/data/meve.rda |binary FedData-4.0.0/FedData/man/download_itrdb.Rd | 2 FedData-4.0.0/FedData/man/figures/README-GHCN-precipitation-1.png |binary FedData-4.0.0/FedData/man/figures/README-GHCN-temperature-1.png |binary FedData-4.0.0/FedData/man/figures/README-NASS-CDL-2.png |binary FedData-4.0.0/FedData/man/figures/README-NED-1.png |binary FedData-4.0.0/FedData/man/figures/README-SSURGO-1.png |binary FedData-4.0.0/FedData/man/figures/README-SSURGO-area-1.png |binary FedData-4.0.0/FedData/man/get_daymet.Rd | 14 FedData-4.0.0/FedData/man/get_ghcn_daily.Rd | 27 FedData-4.0.0/FedData/man/get_ghcn_daily_station.Rd | 14 FedData-4.0.0/FedData/man/get_ghcn_inventory.Rd | 6 FedData-4.0.0/FedData/man/get_itrdb.Rd | 7 FedData-4.0.0/FedData/man/get_nass_cdl.Rd | 12 FedData-4.0.0/FedData/man/get_ned.Rd | 20 FedData-4.0.0/FedData/man/get_ned_tile.Rd | 9 FedData-4.0.0/FedData/man/get_nhd.Rd | 8 FedData-4.0.0/FedData/man/get_nlcd.Rd | 16 FedData-4.0.0/FedData/man/get_padus.Rd |only FedData-4.0.0/FedData/man/get_ssurgo.Rd | 7 FedData-4.0.0/FedData/man/get_ssurgo_inventory.Rd | 4 FedData-4.0.0/FedData/man/get_ssurgo_study_area.Rd | 7 FedData-4.0.0/FedData/man/get_wbd.Rd | 8 FedData-4.0.0/FedData/man/plot_nhd.Rd | 8 FedData-4.0.0/FedData/man/polygon_from_extent.Rd | 7 FedData-4.0.0/FedData/man/url_base.Rd | 2 FedData-4.0.0/FedData/tests/testthat/test.NLCD.R | 10 FedData-4.0.0/FedData/tests/testthat/test.UTILITY.R | 1 47 files changed, 579 insertions(+), 997 deletions(-)
Title: Estimation of the Number of Fatalities from Carcass Searches
Description: The number of bird or bat fatalities from collisions with buildings, towers or wind energy turbines can be estimated based on carcass searches and experimentally assessed carcass persistence times and searcher efficiency. Functions for estimating the probability that a bird or bat that died is found by a searcher are provided. Further functions calculate the posterior distribution of the number of fatalities based on the number of carcasses found and the estimated detection probability.
Author: Fraenzi Korner-Nievergelt, Ivo Niermann, Oliver Behr, Matthew A. Etterson, Robert Brinkmann, Pius Korner, Barbara Hellriegel, Tobias Roth, Manuela M. P. Huso, Dan Dalthorp
Maintainer: Fraenzi Korner-Nievergelt <fraenzi.korner@oikostat.ch>
Diff between carcass versions 1.6 dated 2016-03-08 and 1.7 dated 2023-10-03
carcass-1.6/carcass/data/batdist.txt.gz |only carcass-1.6/carcass/data/persistence.txt.gz |only carcass-1.6/carcass/data/searches.txt.gz |only carcass-1.7/carcass/DESCRIPTION | 8 carcass-1.7/carcass/MD5 | 27 +- carcass-1.7/carcass/R/posteriorN.R | 31 +- carcass-1.7/carcass/R/search.efficiency.r | 44 +-- carcass-1.7/carcass/README.md |only carcass-1.7/carcass/data/batdist.txt |only carcass-1.7/carcass/data/persistence.txt |only carcass-1.7/carcass/data/searches.txt |only carcass-1.7/carcass/man/CIetterson.Rd | 2 carcass-1.7/carcass/man/carcass-package.Rd | 41 +-- carcass-1.7/carcass/man/estimateN.Rd | 332 +++++++++++++-------------- carcass-1.7/carcass/man/pkorner.Rd | 220 ++++++++--------- carcass-1.7/carcass/man/posteriorN.Rd | 122 ++++----- carcass-1.7/carcass/man/search.efficiency.Rd | 126 +++++----- carcass-1.7/carcass/man/searches.Rd | 56 ++-- 18 files changed, 508 insertions(+), 501 deletions(-)