Title: Wrap Vectors in Markdown Formatting
Description: Ease the transition between R vectors and markdown
text. With 'gluedown' and 'rmarkdown', users can create traditional
vectors in R, glue those strings together with the markdown syntax,
and print those formatted vectors directly to the document. This
package primarily uses GitHub Flavored Markdown (GFM), an offshoot of
the unambiguous CommonMark specification by John MacFarlane (2019)
<https://spec.commonmark.org/>.
Author: Kiernan Nicholls [aut, cre]
Maintainer: Kiernan Nicholls <kiernann@protonmail.com>
Diff between gluedown versions 1.0.6 dated 2022-11-06 and 1.0.7 dated 2023-10-28
gluedown-1.0.6/gluedown/R/gluedown.R |only gluedown-1.0.6/gluedown/man/gluedown.Rd |only gluedown-1.0.7/gluedown/DESCRIPTION | 10 gluedown-1.0.7/gluedown/MD5 | 26 gluedown-1.0.7/gluedown/NEWS.md | 2 gluedown-1.0.7/gluedown/R/gluedown-package.R |only gluedown-1.0.7/gluedown/README.md | 23 gluedown-1.0.7/gluedown/build/vignette.rds |binary gluedown-1.0.7/gluedown/inst/doc/github-spec.html | 676 ++++------ gluedown-1.0.7/gluedown/inst/doc/literal-programming.Rmd | 2 gluedown-1.0.7/gluedown/inst/doc/literal-programming.html | 288 ++-- gluedown-1.0.7/gluedown/man/gluedown-package.Rd |only gluedown-1.0.7/gluedown/man/md_convert.Rd | 2 gluedown-1.0.7/gluedown/tests/testthat/test-4.10-tables.R | 2 gluedown-1.0.7/gluedown/tests/testthat/test-generic-functions.R | 1 gluedown-1.0.7/gluedown/vignettes/literal-programming.Rmd | 2 16 files changed, 517 insertions(+), 517 deletions(-)
Title: Triangle Meshes and Related Geometry Tools
Description: Generate planar and spherical triangle meshes,
compute finite element calculations for 1- and 2-dimensional flat and curved
manifolds with associated basis function spaces, methods for lines and
polygons, and transparent handling of coordinate reference systems and
coordinate transformation, including 'sf' and 'sp' geometries. The core
'fmesher' library code was originally part of the 'INLA' package, and
implements parts of "Triangulations and Applications" by
Hjelle and Daehlen (2006) <doi:10.1007/3-540-33261-8>.
Author: Finn Lindgren [aut, cre, cph] ,
Seaton Andy [ctb] ,
Suen Man Ho [ctb] ,
Fabian E. Bachl [ctb]
Maintainer: Finn Lindgren <finn.lindgren@gmail.com>
Diff between fmesher versions 0.1.3 dated 2023-10-18 and 0.1.4 dated 2023-10-28
DESCRIPTION | 6 MD5 | 42 +++--- NEWS.md | 4 inst/doc/basic_use.R | 2 inst/doc/fmesher_library.R | 2 inst/doc/inla_conversion.R | 16 +- inst/doc/inla_conversion.html | 8 - src/RcppFmesher.h | 17 -- src/Rcpp_interface.cc | 111 ++++++++-------- src/basis.cc | 34 ++--- src/basis.h | 19 +- src/ioutils.cc | 177 ++++++++++++++++---------- src/ioutils.h | 282 +++++++++++++++++++++++------------------- src/ioutils_t.h | 24 +-- src/mesh.cc | 29 ++-- src/mesh.h | 4 src/meshc.h | 2 src/trees.cc | 2 src/trees.h | 58 ++------ src/trees_t.h | 3 src/vector.h | 18 +- src/vector_t.h | 41 ++---- 22 files changed, 478 insertions(+), 423 deletions(-)
Title: Extra Recipes for Encoding Predictors
Description: Predictors can be converted to one or more numeric
representations using a variety of methods. Effect encodings using
simple generalized linear models <arXiv:1611.09477> or nonlinear
models <arXiv:1604.06737> can be used. There are also functions for
dimension reduction and other approaches.
Author: Emil Hvitfeldt [aut, cre] ,
Max Kuhn [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between embed versions 1.1.2 dated 2023-08-17 and 1.1.3 dated 2023-10-28
embed-1.1.2/embed/man/is_tf_available.Rd |only embed-1.1.2/embed/tests/testthat/_snaps/embed.new.md |only embed-1.1.3/embed/DESCRIPTION | 6 +-- embed-1.1.3/embed/MD5 | 30 ++++++++----------- embed-1.1.3/embed/NAMESPACE | 1 embed-1.1.3/embed/NEWS.md | 6 +++ embed-1.1.3/embed/R/aaa.R | 9 +++++ embed-1.1.3/embed/R/collapse_stringdist.R | 4 +- embed-1.1.3/embed/R/discretize_xgb.R | 19 ++++++++++++ embed-1.1.3/embed/R/embed.R | 15 ++++++--- embed-1.1.3/embed/R/feature_hash.R | 16 ++++++++++ embed-1.1.3/embed/R/lencode_glm.R | 2 - embed-1.1.3/embed/man/step_discretize_xgb.Rd | 22 +++++++++++++ embed-1.1.3/embed/man/step_embed.Rd | 14 ++++++++ embed-1.1.3/embed/man/step_feature_hash.Rd | 19 ++++++++++++ embed-1.1.3/embed/tests/testthat/test-embed.R | 22 ++++++------- embed-1.1.3/embed/tests/testthat/test-helpers.R | 2 - 17 files changed, 149 insertions(+), 38 deletions(-)
Title: Graphical Independence Networks
Description: Probability propagation in graphical independence networks, also
known as Bayesian networks or probabilistic expert systems. Documentation
of the package is provided in vignettes included in the package and in
the paper by Højsgaard (2012, <doi:10.18637/jss.v046.i10>).
See 'citation("gRain")' for details.
Author: Soeren Hoejsgaard <sorenh@math.aau.dk>
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between gRain versions 1.3.14 dated 2023-08-12 and 1.4.0 dated 2023-10-28
gRain-1.3.14/gRain/R/cpt.R |only gRain-1.3.14/gRain/man/cptable.Rd |only gRain-1.3.14/gRain/man/repeatPattern.Rd |only gRain-1.4.0/gRain/DESCRIPTION | 8 gRain-1.4.0/gRain/MD5 | 75 +-- gRain-1.4.0/gRain/NAMESPACE | 8 gRain-1.4.0/gRain/NEWS | 17 gRain-1.4.0/gRain/R/cpt_pot_extract.R | 204 ++++------ gRain-1.4.0/gRain/R/cpt_pot_gather.R | 151 ++++--- gRain-1.4.0/gRain/R/cptable_create.R | 165 +++----- gRain-1.4.0/gRain/R/cptable_special.R | 4 gRain-1.4.0/gRain/R/evidence_joint.R | 2 gRain-1.4.0/gRain/R/grain_data.R | 4 gRain-1.4.0/gRain/R/grain_main.R | 75 --- gRain-1.4.0/gRain/R/grain_simulate.R | 2 gRain-1.4.0/gRain/R/loadSaveHuginNet.R | 4 gRain-1.4.0/gRain/R/misc.R |only gRain-1.4.0/gRain/R/predict.R | 2 gRain-1.4.0/gRain/R/repeat_pattern.R | 155 ++++--- gRain-1.4.0/gRain/data/chest_cpt.RData |binary gRain-1.4.0/gRain/data/grass_cpt.RData |binary gRain-1.4.0/gRain/inst/doc/grain_intro.Rnw | 2 gRain-1.4.0/gRain/inst/doc/grain_intro.pdf |binary gRain-1.4.0/gRain/man/chest.Rd | 2 gRain-1.4.0/gRain/man/components_extract.Rd | 39 + gRain-1.4.0/gRain/man/components_gather.Rd | 14 gRain-1.4.0/gRain/man/cpt.Rd | 94 +++- gRain-1.4.0/gRain/man/grain-main.Rd | 18 gRain-1.4.0/gRain/man/grain-simulate.Rd | 2 gRain-1.4.0/gRain/man/grain_joint_evidence.Rd | 2 gRain-1.4.0/gRain/man/grain_predict.Rd | 2 gRain-1.4.0/gRain/man/grass.Rd | 2 gRain-1.4.0/gRain/man/load-save-hugin.Rd | 4 gRain-1.4.0/gRain/man/mendel.Rd | 2 gRain-1.4.0/gRain/man/repeat_pattern.Rd |only gRain-1.4.0/gRain/man/simplify_query.Rd | 2 gRain-1.4.0/gRain/vignettes/figures/grain-chest-LS-1.pdf |binary gRain-1.4.0/gRain/vignettes/figures/grain-unnamed-chunk-34-1.pdf |binary gRain-1.4.0/gRain/vignettes/figures/grain-unnamed-chunk-39-1.pdf |binary gRain-1.4.0/gRain/vignettes/figures/grain-unnamed-chunk-40-1.pdf |binary gRain-1.4.0/gRain/vignettes/grain_intro.Rnw | 2 41 files changed, 567 insertions(+), 496 deletions(-)
Title: SQLite Interface for R
Description: Embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the SQLite
engine and for various extensions in a recent version is included.
System libraries will never be consulted because this package relies
on static linking for the plugins it includes; this also ensures a
consistent experience across all installations.
Author: Kirill Mueller [aut, cre] ,
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
D. Richard Hipp [ctb] ,
Dan Kennedy [ctb] ,
Joe Mistachkin [ctb] ,
SQLite Authors [ctb] ,
Liam Healy [ctb] ,
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RSQLite versions 2.3.1 dated 2023-04-03 and 2.3.2 dated 2023-10-28
DESCRIPTION | 8 MD5 | 22 NEWS.md | 11 R/dbConnect_SQLiteDriver.R | 2 README.md | 2 build/vignette.rds |binary inst/doc/RSQLite.R | 2 man/SQLite.Rd | 2 src/vendor/extensions/regexp.c | 4 src/vendor/extensions/series.c | 215 - src/vendor/sqlite3/sqlite3.c | 6959 +++++++++++++++++++++++++++-------------- src/vendor/sqlite3/sqlite3.h | 202 - 12 files changed, 5016 insertions(+), 2413 deletions(-)
Title: Get Silhouettes of Organisms from PhyloPic
Description: Work with the PhyloPic Web Service (<http://api-docs.phylopic.org/v2/>)
to fetch silhouette images of organisms. Includes functions for adding
silhouettes to both base R plots and ggplot2 plots.
Author: William Gearty [aut, cre] ,
Lewis A. Jones [aut] ,
Scott Chamberlain [aut] ,
David Miller [ctb]
Maintainer: William Gearty <willgearty@gmail.com>
Diff between rphylopic versions 1.2.1 dated 2023-10-10 and 1.2.2 dated 2023-10-28
rphylopic-1.2.1/rphylopic/inst/doc/a-getting-started.R |only rphylopic-1.2.1/rphylopic/inst/doc/b-advanced-ggplot.R |only rphylopic-1.2.1/rphylopic/inst/doc/c-advanced-base.R |only rphylopic-1.2.2/rphylopic/DESCRIPTION | 6 rphylopic-1.2.2/rphylopic/MD5 | 54 ++- rphylopic-1.2.2/rphylopic/NEWS.md | 4 rphylopic-1.2.2/rphylopic/R/release.R |only rphylopic-1.2.2/rphylopic/build/vignette.rds |binary rphylopic-1.2.2/rphylopic/inst/doc/a-getting-started.Rmd | 118 +++++-- rphylopic-1.2.2/rphylopic/inst/doc/a-getting-started.html | 33 + rphylopic-1.2.2/rphylopic/inst/doc/b-advanced-ggplot.Rmd | 167 +++++++--- rphylopic-1.2.2/rphylopic/inst/doc/b-advanced-ggplot.html | 91 ++++- rphylopic-1.2.2/rphylopic/inst/doc/c-advanced-base.Rmd | 162 +++++++-- rphylopic-1.2.2/rphylopic/inst/doc/c-advanced-base.html | 84 ++++- rphylopic-1.2.2/rphylopic/vignettes/a-getting-started.Rmd | 118 +++++-- rphylopic-1.2.2/rphylopic/vignettes/b-advanced-ggplot.Rmd | 167 +++++++--- rphylopic-1.2.2/rphylopic/vignettes/base-geog-plot-1-1.png |only rphylopic-1.2.2/rphylopic/vignettes/base-geog-plot-2-1.png |only rphylopic-1.2.2/rphylopic/vignettes/base-penguin-plot-1-1.png |only rphylopic-1.2.2/rphylopic/vignettes/base-penguin-plot-2-1.png |only rphylopic-1.2.2/rphylopic/vignettes/base-penguin-plot-3-1.png |only rphylopic-1.2.2/rphylopic/vignettes/base-penguin-plot-4-1.png |only rphylopic-1.2.2/rphylopic/vignettes/base-penguin-plot-5-1.png |only rphylopic-1.2.2/rphylopic/vignettes/base-phylo-plot-1-1.png |only rphylopic-1.2.2/rphylopic/vignettes/base-phylo-plot-2-1.png |only rphylopic-1.2.2/rphylopic/vignettes/base-phylo-plot-3-1.png |only rphylopic-1.2.2/rphylopic/vignettes/base-phylo-plot-4-1.png |only rphylopic-1.2.2/rphylopic/vignettes/c-advanced-base.Rmd | 162 +++++++-- rphylopic-1.2.2/rphylopic/vignettes/ggplot-geog-plot-1-1.png |only rphylopic-1.2.2/rphylopic/vignettes/ggplot-geog-plot-2-1.png |only rphylopic-1.2.2/rphylopic/vignettes/ggplot-penguin-plot-1-1.png |only rphylopic-1.2.2/rphylopic/vignettes/ggplot-penguin-plot-2-1.png |only rphylopic-1.2.2/rphylopic/vignettes/ggplot-penguin-plot-3-1.png |only rphylopic-1.2.2/rphylopic/vignettes/ggplot-penguin-plot-4-1.png |only rphylopic-1.2.2/rphylopic/vignettes/ggplot-penguin-plot-5-1.png |only rphylopic-1.2.2/rphylopic/vignettes/ggplot-penguin-plot-6-1.png |only rphylopic-1.2.2/rphylopic/vignettes/ggplot-phylo-plot-1-1.png |only rphylopic-1.2.2/rphylopic/vignettes/ggplot-phylo-plot-2-1.png |only rphylopic-1.2.2/rphylopic/vignettes/ggplot-phylo-plot-3-1.png |only rphylopic-1.2.2/rphylopic/vignettes/ggplot-phylo-plot-4-1.png |only rphylopic-1.2.2/rphylopic/vignettes/intro-base-plot-1.png |only rphylopic-1.2.2/rphylopic/vignettes/intro-ggplot-plot-1.png |only rphylopic-1.2.2/rphylopic/vignettes/intro-transform-plot-1.png |only 43 files changed, 930 insertions(+), 236 deletions(-)
Title: A Database Management Tool
Description: A database management tool built as a 'shiny' application. Connect to various
databases to send queries, upload files, preview tables, and more.
Author: Marcus Codrescu [aut, cre]
Maintainer: Marcus Codrescu <m.codrescu@outlook.com>
Diff between octopus versions 0.3.0 dated 2023-06-16 and 0.4.0 dated 2023-10-28
DESCRIPTION | 10 +- MD5 | 23 +++--- NAMESPACE | 7 + NEWS.md | 8 ++ R/snowflake_connection.R | 2 R/submit_query.R | 6 + R/table_modal_w_download.R | 101 ++++++++++++++++++++++++++- R/view_database.R | 56 +++++++++++++- inst/doc/octopus.html | 74 +++++++++---------- man/view_database.Rd | 4 - tests/testthat/test-duckdb_connection.R | 2 tests/testthat/test-table_modal_w_download.R |only tests/testthat/test-view_database.R | 13 +++ 13 files changed, 240 insertions(+), 66 deletions(-)
Title: Variable Length Markov Chains with Covariates
Description: Estimates Variable Length Markov Chains (VLMC) models and VLMC with
covariates models from discrete sequences. Supports model selection via
information criteria and simulation of new sequences from an estimated
model. See Bühlmann, P. and Wyner, A. J. (1999) <doi:10.1214/aos/1018031204>
for VLMC and Zanin Zambom, A., Kim, S. and Lopes Garcia, N. (2022)
<doi:10.1111/jtsa.12615> for VLMC with covariates.
Author: Fabrice Rossi [aut, cre, cph] ,
Hugo Le Picard [ctb] ,
Guenole Joubioux [ctb]
Maintainer: Fabrice Rossi <Fabrice.Rossi@apiacoa.org>
Diff between mixvlmc versions 0.1.1 dated 2023-07-10 and 0.2.0 dated 2023-10-28
mixvlmc-0.1.1/mixvlmc/tests/testthat/test-vlmc_lilelihood.R |only mixvlmc-0.2.0/mixvlmc/DESCRIPTION | 16 mixvlmc-0.2.0/mixvlmc/MD5 | 391 ++++++---- mixvlmc-0.2.0/mixvlmc/NAMESPACE | 67 + mixvlmc-0.2.0/mixvlmc/NEWS.md | 78 + mixvlmc-0.2.0/mixvlmc/R/RcppExports.R | 12 mixvlmc-0.2.0/mixvlmc/R/autoplot_tune.R |only mixvlmc-0.2.0/mixvlmc/R/constant_model.R | 2 mixvlmc-0.2.0/mixvlmc/R/contexts.R | 106 ++ mixvlmc-0.2.0/mixvlmc/R/covlmc.R | 327 +++++--- mixvlmc-0.2.0/mixvlmc/R/covlmc_contexts.R | 136 ++- mixvlmc-0.2.0/mixvlmc/R/covlmc_draw.R | 5 mixvlmc-0.2.0/mixvlmc/R/covlmc_likelihood.R | 280 ++++--- mixvlmc-0.2.0/mixvlmc/R/covlmc_metrics.R | 29 mixvlmc-0.2.0/mixvlmc/R/covlmc_predict.R |only mixvlmc-0.2.0/mixvlmc/R/covlmc_simulate.R | 50 - mixvlmc-0.2.0/mixvlmc/R/covlmc_trim.R | 45 - mixvlmc-0.2.0/mixvlmc/R/covlmc_tune.R | 163 ++-- mixvlmc-0.2.0/mixvlmc/R/ctx_node.R |only mixvlmc-0.2.0/mixvlmc/R/ctx_node_covlmc.R |only mixvlmc-0.2.0/mixvlmc/R/ctx_node_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/ctx_node_navigation.R |only mixvlmc-0.2.0/mixvlmc/R/ctx_node_navigation_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/ctx_node_vlmc.R |only mixvlmc-0.2.0/mixvlmc/R/ctx_node_vlmc_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/ctx_tree.R | 94 +- mixvlmc-0.2.0/mixvlmc/R/ctx_tree_contexts.R | 131 ++- mixvlmc-0.2.0/mixvlmc/R/ctx_tree_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/ctx_tree_cpp_contexts.R |only mixvlmc-0.2.0/mixvlmc/R/ctx_tree_cpp_draw.R |only mixvlmc-0.2.0/mixvlmc/R/cutoff.R | 38 mixvlmc-0.2.0/mixvlmc/R/dts.R |only mixvlmc-0.2.0/mixvlmc/R/extptr.R |only mixvlmc-0.2.0/mixvlmc/R/glm_fit.R | 46 + mixvlmc-0.2.0/mixvlmc/R/glm_metrics.R | 48 + mixvlmc-0.2.0/mixvlmc/R/glm_predict.R | 57 + mixvlmc-0.2.0/mixvlmc/R/glm_sample.R | 64 + mixvlmc-0.2.0/mixvlmc/R/glm_tools.R | 4 mixvlmc-0.2.0/mixvlmc/R/glm_trim.R | 11 mixvlmc-0.2.0/mixvlmc/R/match_ctx.R | 29 mixvlmc-0.2.0/mixvlmc/R/metrics.R | 38 mixvlmc-0.2.0/mixvlmc/R/mixvlmc-package.R | 10 mixvlmc-0.2.0/mixvlmc/R/plot_tune.R |only mixvlmc-0.2.0/mixvlmc/R/summary_covlmc.R | 2 mixvlmc-0.2.0/mixvlmc/R/summary_ctx_tree.R | 16 mixvlmc-0.2.0/mixvlmc/R/summary_ctx_tree_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/summary_tune_covlmc.R | 2 mixvlmc-0.2.0/mixvlmc/R/summary_tune_vlmc.R | 2 mixvlmc-0.2.0/mixvlmc/R/summary_vlmc.R | 14 mixvlmc-0.2.0/mixvlmc/R/summary_vlmc_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/utils.R | 2 mixvlmc-0.2.0/mixvlmc/R/vlmc.R | 208 +++-- mixvlmc-0.2.0/mixvlmc/R/vlmc_as.R | 46 + mixvlmc-0.2.0/mixvlmc/R/vlmc_as_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/vlmc_contexts.R | 129 ++- mixvlmc-0.2.0/mixvlmc/R/vlmc_contexts_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/vlmc_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/vlmc_draw_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/vlmc_likelihood.R | 199 ++++- mixvlmc-0.2.0/mixvlmc/R/vlmc_likelihood_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/vlmc_metrics.R | 53 + mixvlmc-0.2.0/mixvlmc/R/vlmc_predict.R | 123 +++ mixvlmc-0.2.0/mixvlmc/R/vlmc_predict_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/vlmc_simulate.R | 121 ++- mixvlmc-0.2.0/mixvlmc/R/vlmc_simulate_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/vlmc_trim.R | 17 mixvlmc-0.2.0/mixvlmc/R/vlmc_trim_cpp.R |only mixvlmc-0.2.0/mixvlmc/R/vlmc_tune.R | 137 ++- mixvlmc-0.2.0/mixvlmc/R/zzz.R | 4 mixvlmc-0.2.0/mixvlmc/README.md | 43 - mixvlmc-0.2.0/mixvlmc/build/vignette.rds |binary mixvlmc-0.2.0/mixvlmc/inst/doc/context-trees.R | 21 mixvlmc-0.2.0/mixvlmc/inst/doc/context-trees.Rmd | 78 + mixvlmc-0.2.0/mixvlmc/inst/doc/context-trees.html | 140 ++- mixvlmc-0.2.0/mixvlmc/inst/doc/covlmc.R | 14 mixvlmc-0.2.0/mixvlmc/inst/doc/covlmc.Rmd | 37 mixvlmc-0.2.0/mixvlmc/inst/doc/covlmc.html | 233 +++-- mixvlmc-0.2.0/mixvlmc/inst/doc/likelihood.R |only mixvlmc-0.2.0/mixvlmc/inst/doc/likelihood.Rmd |only mixvlmc-0.2.0/mixvlmc/inst/doc/likelihood.html |only mixvlmc-0.2.0/mixvlmc/inst/doc/prediction.R |only mixvlmc-0.2.0/mixvlmc/inst/doc/prediction.Rmd |only mixvlmc-0.2.0/mixvlmc/inst/doc/prediction.html |only mixvlmc-0.2.0/mixvlmc/inst/doc/sampling.R | 12 mixvlmc-0.2.0/mixvlmc/inst/doc/sampling.Rmd | 39 mixvlmc-0.2.0/mixvlmc/inst/doc/sampling.html | 257 +++--- mixvlmc-0.2.0/mixvlmc/inst/doc/variable-length-markov-chains.R | 23 mixvlmc-0.2.0/mixvlmc/inst/doc/variable-length-markov-chains.Rmd | 50 - mixvlmc-0.2.0/mixvlmc/inst/doc/variable-length-markov-chains.html | 214 +++-- mixvlmc-0.2.0/mixvlmc/man/as_sequence.Rd |only mixvlmc-0.2.0/mixvlmc/man/as_vlmc.Rd | 13 mixvlmc-0.2.0/mixvlmc/man/as_vlmc.ctx_tree_cpp.Rd |only mixvlmc-0.2.0/mixvlmc/man/autoplot.tune_covlmc.Rd |only mixvlmc-0.2.0/mixvlmc/man/autoplot.tune_vlmc.Rd |only mixvlmc-0.2.0/mixvlmc/man/children.Rd |only mixvlmc-0.2.0/mixvlmc/man/context_number.covlmc.Rd | 3 mixvlmc-0.2.0/mixvlmc/man/contexts.Rd | 44 - mixvlmc-0.2.0/mixvlmc/man/contexts.covlmc.Rd | 105 +- mixvlmc-0.2.0/mixvlmc/man/contexts.ctx_tree.Rd | 84 +- mixvlmc-0.2.0/mixvlmc/man/contexts.vlmc.Rd | 127 ++- mixvlmc-0.2.0/mixvlmc/man/counts.Rd |only mixvlmc-0.2.0/mixvlmc/man/covariate_depth.Rd |only 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Title: Washington Metropolitan Area Transit Authority API
Description: The Washington Metropolitan Area Transit Authority
is a government agency operating light rail and passenger buses in the
Washington D.C. area. With a free developer account, access their
'Metro Transparent Data Sets API' <https://developer.wmata.com/> to
return data frames of transit data for easy analysis.
Author: Kiernan Nicholls [aut, cre]
Maintainer: Kiernan Nicholls <kiernann@protonmail.com>
Diff between metro versions 0.9.1 dated 2021-03-01 and 0.9.2 dated 2023-10-28
metro-0.9.1/metro/R/metro.R |only metro-0.9.1/metro/man/metro.Rd |only metro-0.9.2/metro/DESCRIPTION | 14 +- metro-0.9.2/metro/MD5 | 71 ++++++------- metro-0.9.2/metro/NAMESPACE | 1 metro-0.9.2/metro/NEWS.md | 8 + metro-0.9.2/metro/R/api.R | 5 metro-0.9.2/metro/R/bus-position.R | 18 ++- metro-0.9.2/metro/R/bus-routes.R | 2 metro-0.9.2/metro/R/bus-schedule.R | 2 metro-0.9.2/metro/R/bus-stops.R | 4 metro-0.9.2/metro/R/data.R | 2 metro-0.9.2/metro/R/incidents-bus.R | 2 metro-0.9.2/metro/R/incidents-elevator.R | 2 metro-0.9.2/metro/R/incidents-rail.R | 5 metro-0.9.2/metro/R/key.R | 2 metro-0.9.2/metro/R/metro-package.R |only metro-0.9.2/metro/R/next-bus.R | 4 metro-0.9.2/metro/R/next-train.R | 4 metro-0.9.2/metro/R/rail-entrance.R | 4 metro-0.9.2/metro/R/utils.R | 11 ++ metro-0.9.2/metro/README.md | 70 +++++++----- metro-0.9.2/metro/inst/WORDLIST | 5 metro-0.9.2/metro/man/bus_position.Rd | 9 - metro-0.9.2/metro/man/bus_routes.Rd | 2 metro-0.9.2/metro/man/metro-package.Rd |only metro-0.9.2/metro/man/metro_routes.Rd | 2 metro-0.9.2/metro/man/no_data_now.Rd |only metro-0.9.2/metro/man/wmata_api.Rd | 6 - metro-0.9.2/metro/tests/testthat/test-bus-positions.R | 2 metro-0.9.2/metro/tests/testthat/test-bus-stops.R | 14 ++ metro-0.9.2/metro/tests/testthat/test-incidents-bus.R | 12 ++ metro-0.9.2/metro/tests/testthat/test-incidents-elevator.R | 12 ++ metro-0.9.2/metro/tests/testthat/test-incidents-rail.R | 14 ++ metro-0.9.2/metro/tests/testthat/test-key.R | 4 metro-0.9.2/metro/tests/testthat/test-next-bus.R | 12 ++ metro-0.9.2/metro/tests/testthat/test-next-train.R | 28 ++++- metro-0.9.2/metro/tests/testthat/test-rail-entrance.R | 2 metro-0.9.2/metro/tests/testthat/test-rail-info.R | 4 39 files changed, 240 insertions(+), 119 deletions(-)
Title: Utilities for Quantiles
Description: Functions for unconditional and conditional quantiles. These
include methods for transformation-based quantile regression,
quantile-based measures of location, scale and shape, methods for quantiles
of discrete variables, quantile-based multiple imputation, restricted
quantile regression, directional quantile classification, and quantile
ratio regression.
A vignette is given in Geraci (2016, The R Journal) <doi:10.32614/RJ-2016-037> and included in the package.
Author: Marco Geraci [aut, cph, cre] ,
Alessio Farcomeni [ctb] ,
Cinzia Viroli [ctb]
Maintainer: Marco Geraci <marco.geraci@uniroma1.it>
Diff between Qtools versions 1.5.8 dated 2023-10-17 and 1.5.9 dated 2023-10-28
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 8 +++++++- R/Qtools_qrr.R | 23 ++++++++++++++++++----- man/Qtools-package.Rd | 4 ++-- man/qrr.Rd | 7 +++++-- 6 files changed, 41 insertions(+), 19 deletions(-)
Title: Linear Networks Functionality of the 'spatstat' Family
Description: Defines types of spatial data on a linear network
and provides functionality for geometrical operations,
data analysis and modelling of data on a linear network,
in the 'spatstat' family of packages.
Contains definitions and support for linear networks, including creation of networks, geometrical measurements, topological connectivity, geometrical operations such as inserting and deleting vertices, intersecting a network with another object, and interactive editing of networks.
Data types defined on a network include point patterns, pixel images, functions, and tessellations.
Exploratory methods include kernel estimation of intensity on a network, K-functions and pair correlation functions on a network, simulation envelopes, nearest neighbour distance and empty space distance, relative risk estimation with cross-validated bandwidth selection. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Mont [...truncated...]
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Greg McSwiggan [aut, cph],
Tilman Davies [ctb, cph],
Mehdi Moradi [ctb, cph],
Suman Rakshit [ctb, cph],
Ottmar Cronie [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.linnet versions 3.1-1 dated 2023-05-14 and 3.1-3 dated 2023-10-28
DESCRIPTION | 14 +- MD5 | 270 ++++++++++++++++++++--------------------- NEWS | 13 + inst/doc/packagesizes.txt | 2 man/Extract.linim.Rd | 1 man/Extract.linnet.Rd | 1 man/Extract.lpp.Rd | 1 man/Math.linim.Rd | 1 man/Replace.linim.Rd | 1 man/Smooth.lpp.Rd | 1 man/Window.lpp.Rd | 1 man/addVertices.Rd | 2 man/affine.linnet.Rd | 2 man/affine.lpp.Rd | 2 man/anova.lppm.Rd | 4 man/as.data.frame.lintess.Rd | 3 man/as.linfun.Rd | 1 man/as.linim.Rd | 1 man/as.linnet.linim.Rd | 1 man/as.linnet.psp.Rd | 1 man/as.lpp.Rd | 1 man/as.owin.lpp.Rd | 8 - man/auc.lpp.Rd | 1 man/berman.test.lpp.Rd | 2 man/branchlabelfun.Rd | 2 man/bw.lppl.Rd | 2 man/bw.relrisk.lpp.Rd | 2 man/bw.voronoi.Rd | 1 man/cdf.test.lpp.Rd | 2 man/chop.linnet.Rd | 1 man/clicklpp.Rd | 1 man/connected.linnet.Rd | 1 man/connected.lpp.Rd | 1 man/crossdist.lpp.Rd | 1 man/crossing.linnet.Rd | 1 man/cut.lpp.Rd | 1 man/data.lppm.Rd | 1 man/density.linnet.Rd | 1 man/density.lpp.Rd | 1 man/densityHeat.lpp.Rd | 1 man/densityQuick.lpp.Rd | 1 man/densityVoronoi.lpp.Rd | 2 man/densityfun.lpp.Rd | 1 man/diameter.linnet.Rd | 1 man/distfun.lpp.Rd | 1 man/distmap.lpp.Rd | 1 man/divide.linnet.Rd | 2 man/domain.lpp.Rd | 1 man/envelope.lpp.Rd | 4 man/eval.linim.Rd | 1 man/fitted.lppm.Rd | 1 man/identify.lpp.Rd | 1 man/integral.linim.Rd | 1 man/intensity.lpp.Rd | 1 man/intersect.lintess.Rd | 2 man/is.connected.linnet.Rd | 1 man/is.marked.lppm.Rd | 1 man/is.multitype.lpp.Rd | 1 man/is.multitype.lppm.Rd | 1 man/is.stationary.lppm.Rd | 1 man/linearJinhom.Rd | 1 man/linearK.Rd | 1 man/linearKEuclid.Rd | 3 man/linearKEuclidInhom.Rd | 1 man/linearKcross.Rd | 1 man/linearKcross.inhom.Rd | 1 man/linearKdot.Rd | 1 man/linearKdot.inhom.Rd | 1 man/linearKinhom.Rd | 1 man/lineardirichlet.Rd | 7 - man/lineardisc.Rd | 1 man/linearmarkconnect.Rd | 1 man/linearmarkequal.Rd | 1 man/linearpcf.Rd | 1 man/linearpcfEuclid.Rd | 3 man/linearpcfEuclidInhom.Rd | 1 man/linearpcfcross.Rd | 1 man/linearpcfcross.inhom.Rd | 1 man/linearpcfdot.Rd | 1 man/linearpcfdot.inhom.Rd | 1 man/linearpcfinhom.Rd | 1 man/lineartileindex.Rd | 2 man/linequad.Rd | 1 man/linfun.Rd | 1 man/linim.Rd | 1 man/linnet.Rd | 1 man/lintess.Rd | 2 man/lpp.Rd | 1 man/lppm.Rd | 1 man/macros/defns.Rd | 5 man/marks.linnet.Rd | 1 man/marks.lintess.Rd | 2 man/mean.linim.Rd | 1 man/methods.linfun.Rd | 1 man/methods.linim.Rd | 1 man/methods.linnet.Rd | 1 man/methods.lpp.Rd | 1 man/methods.lppm.Rd | 1 man/model.frame.lppm.Rd | 1 man/model.images.lppm.Rd | 1 man/model.matrix.lppm.Rd | 1 man/nncross.lpp.Rd | 1 man/nndist.lpp.Rd | 1 man/nnfun.lpp.Rd | 1 man/nnwhich.lpp.Rd | 1 man/pairdist.lpp.Rd | 1 man/pairs.linim.Rd | 1 man/persp.linfun.Rd | 2 man/persp.linim.Rd | 1 man/plot.linim.Rd | 6 man/plot.linnet.Rd | 3 man/plot.lintess.Rd | 2 man/plot.lpp.Rd | 1 man/plot.lppm.Rd | 1 man/points.lpp.Rd | 1 man/predict.lppm.Rd | 1 man/pseudoR2.lppm.Rd | 1 man/rSwitzerlpp.Rd | 1 man/rThomaslpp.Rd | 1 man/rcelllpp.Rd | 1 man/relrisk.lpp.Rd | 1 man/rhohat.lpp.Rd | 1 man/rjitter.lpp.Rd | 1 man/rlpp.Rd | 1 man/roc.lpp.Rd | 1 man/rpoislpp.Rd | 1 man/runiflpp.Rd | 1 man/sdr.lpp.Rd | 2 man/simulate.lppm.Rd | 1 man/spatstat.linnet-package.Rd | 2 man/subset.lpp.Rd | 1 man/superimpose.lpp.Rd | 1 man/text.lpp.Rd | 1 man/tilenames.lintess.Rd | 2 man/unstack.lpp.Rd | 1 tests/testsAtoK.R | 4 136 files changed, 327 insertions(+), 162 deletions(-)
More information about spatstat.linnet at CRAN
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Title: Satellite Image Time Series Analysis for Earth Observation Data
Cubes
Description: An end-to-end toolkit for land use and land cover classification
using big Earth observation data, based on machine learning methods
applied to satellite image data cubes, as described in Simoes et al (2021) <doi:10.3390/rs13132428>.
Builds regular data cubes from collections in AWS, Microsoft Planetary Computer,
Brazil Data Cube, and Digital Earth Africa using the Spatio-temporal Asset Catalog (STAC)
protocol (<https://stacspec.org/> and the 'gdalcubes' R package
developed by Appel and Pebesma (2019) <doi:10.3390/data4030092>.
Supports visualization methods for images and time series and
smoothing filters for dealing with noisy time series.
Includes functions for quality assessment of training samples using self-organized maps
as presented by Santos et al (2021) <doi:10.1016/j.isprsjprs.2021.04.014>.
Provides machine learning methods including support vector machines,
random forests, extreme gradient boosting, multi-layer perceptrons,
temporal convolutional neu [...truncated...]
Author: Rolf Simoes [aut],
Gilberto Camara [aut, cre],
Felipe Souza [aut],
Lorena Santos [aut],
Pedro Andrade [aut],
Karine Ferreira [aut],
Alber Sanchez [aut],
Gilberto Queiroz [aut]
Maintainer: Gilberto Camara <gilberto.camara.inpe@gmail.com>
Diff between sits versions 1.4.1 dated 2023-06-12 and 1.4.2 dated 2023-10-28
sits-1.4.1/sits/R/api_expressions.R |only sits-1.4.1/sits/R/sits_temporal_segmentation.R |only sits-1.4.1/sits/R/sits_values.R |only sits-1.4.1/sits/inst/extdata/colors_old.yml |only sits-1.4.1/sits/man/dot-check_dates_parameter.Rd |only sits-1.4.1/sits/man/plot.segments.Rd |only sits-1.4.1/sits/man/sits_join_segments.Rd |only sits-1.4.1/sits/man/sits_supercells.Rd |only sits-1.4.1/sits/man/sits_values.Rd |only sits-1.4.1/sits/man/summary.probs_cube.Rd |only sits-1.4.1/sits/man/summary.variance_cube.Rd |only sits-1.4.2/sits/DESCRIPTION | 59 sits-1.4.2/sits/MD5 | 576 +++--- sits-1.4.2/sits/NAMESPACE | 171 + sits-1.4.2/sits/NEWS.md | 11 sits-1.4.2/sits/R/RcppExports.R | 20 sits-1.4.2/sits/R/api_accessors.R | 195 +- sits-1.4.2/sits/R/api_accuracy.R | 4 sits-1.4.2/sits/R/api_apply.R | 83 sits-1.4.2/sits/R/api_band.R | 82 sits-1.4.2/sits/R/api_bbox.R | 50 sits-1.4.2/sits/R/api_block.R | 104 + sits-1.4.2/sits/R/api_check.R | 919 ++++++---- sits-1.4.2/sits/R/api_chunks.R | 36 sits-1.4.2/sits/R/api_classify.R | 305 ++- sits-1.4.2/sits/R/api_clean.R |only sits-1.4.2/sits/R/api_cluster.R | 38 sits-1.4.2/sits/R/api_colors.R | 157 + sits-1.4.2/sits/R/api_combine_predictions.R | 71 sits-1.4.2/sits/R/api_comp.R | 6 sits-1.4.2/sits/R/api_conf.R | 436 ++-- sits-1.4.2/sits/R/api_csv.R | 9 sits-1.4.2/sits/R/api_cube.R | 539 +++++ sits-1.4.2/sits/R/api_data.R | 647 ++++--- sits-1.4.2/sits/R/api_debug.R | 20 sits-1.4.2/sits/R/api_download.R | 56 sits-1.4.2/sits/R/api_factory.R | 1 sits-1.4.2/sits/R/api_file.R | 115 + sits-1.4.2/sits/R/api_file_info.R | 190 +- sits-1.4.2/sits/R/api_gdal.R | 254 +- sits-1.4.2/sits/R/api_gdalcubes.R | 178 + sits-1.4.2/sits/R/api_jobs.R | 94 - sits-1.4.2/sits/R/api_label_class.R | 77 sits-1.4.2/sits/R/api_mixture_model.R | 100 - sits-1.4.2/sits/R/api_ml_model.R | 68 sits-1.4.2/sits/R/api_mosaic.R | 80 sits-1.4.2/sits/R/api_parallel.R | 9 sits-1.4.2/sits/R/api_period.R | 16 sits-1.4.2/sits/R/api_plot_raster.R | 363 ++- sits-1.4.2/sits/R/api_plot_time_series.R | 41 sits-1.4.2/sits/R/api_plot_vector.R |only sits-1.4.2/sits/R/api_point.R | 23 sits-1.4.2/sits/R/api_predictors.R | 72 sits-1.4.2/sits/R/api_raster.R | 231 +- sits-1.4.2/sits/R/api_raster_sub_image.R | 5 sits-1.4.2/sits/R/api_raster_terra.R | 189 +- sits-1.4.2/sits/R/api_reclassify.R | 38 sits-1.4.2/sits/R/api_regularize.R |only sits-1.4.2/sits/R/api_roi.R | 27 sits-1.4.2/sits/R/api_s2tile.R |only sits-1.4.2/sits/R/api_samples.R | 90 sits-1.4.2/sits/R/api_segments.R | 620 ++++-- sits-1.4.2/sits/R/api_sf.R | 23 sits-1.4.2/sits/R/api_shp.R | 5 sits-1.4.2/sits/R/api_smooth.R | 52 sits-1.4.2/sits/R/api_smote.R | 38 sits-1.4.2/sits/R/api_som.R | 5 sits-1.4.2/sits/R/api_source.R | 74 sits-1.4.2/sits/R/api_source_aws.R | 79 sits-1.4.2/sits/R/api_source_bdc.R | 36 sits-1.4.2/sits/R/api_source_deafrica.R | 19 sits-1.4.2/sits/R/api_source_hls.R | 56 sits-1.4.2/sits/R/api_source_local.R | 444 +++- sits-1.4.2/sits/R/api_source_mpc.R | 260 ++ sits-1.4.2/sits/R/api_source_sdc.R | 54 sits-1.4.2/sits/R/api_source_stac.R | 142 + sits-1.4.2/sits/R/api_source_usgs.R | 69 sits-1.4.2/sits/R/api_space_time_operations.R | 81 sits-1.4.2/sits/R/api_stac.R | 4 sits-1.4.2/sits/R/api_stats.R | 22 sits-1.4.2/sits/R/api_summary.R | 63 sits-1.4.2/sits/R/api_tibble.R | 21 sits-1.4.2/sits/R/api_tile.R | 563 +++++- sits-1.4.2/sits/R/api_timeline.R | 48 sits-1.4.2/sits/R/api_torch.R | 24 sits-1.4.2/sits/R/api_torch_psetae.R | 1 sits-1.4.2/sits/R/api_ts.R | 159 + sits-1.4.2/sits/R/api_tuning.R | 26 sits-1.4.2/sits/R/api_uncertainty.R | 63 sits-1.4.2/sits/R/api_utils.R | 161 + sits-1.4.2/sits/R/api_values.R |only sits-1.4.2/sits/R/api_variance.R | 60 sits-1.4.2/sits/R/api_vector.R |only sits-1.4.2/sits/R/api_vector_info.R |only sits-1.4.2/sits/R/api_view.R | 634 +++--- sits-1.4.2/sits/R/sits_accuracy.R | 101 - 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sits-1.4.2/sits/man/sits_kfold_validate.Rd | 19 sits-1.4.2/sits/man/sits_label_classification.Rd | 44 sits-1.4.2/sits/man/sits_labels.Rd | 54 sits-1.4.2/sits/man/sits_labels_summary.Rd | 2 sits-1.4.2/sits/man/sits_lighttae.Rd | 44 sits-1.4.2/sits/man/sits_list_collections.Rd | 6 sits-1.4.2/sits/man/sits_merge.Rd | 17 sits-1.4.2/sits/man/sits_mixture_model.Rd | 93 - sits-1.4.2/sits/man/sits_mlp.Rd | 32 sits-1.4.2/sits/man/sits_model_export.Rd | 4 sits-1.4.2/sits/man/sits_mosaic.Rd | 21 sits-1.4.2/sits/man/sits_patterns.Rd | 8 sits-1.4.2/sits/man/sits_pred_features.Rd | 7 sits-1.4.2/sits/man/sits_pred_normalize.Rd | 13 sits-1.4.2/sits/man/sits_pred_reference.Rd | 12 sits-1.4.2/sits/man/sits_pred_sample.Rd | 8 sits-1.4.2/sits/man/sits_predictors.Rd | 10 sits-1.4.2/sits/man/sits_reclassify.Rd | 177 + sits-1.4.2/sits/man/sits_reduce_imbalance.Rd | 4 sits-1.4.2/sits/man/sits_regularize.Rd | 110 - sits-1.4.2/sits/man/sits_resnet.Rd | 5 sits-1.4.2/sits/man/sits_rfor.Rd | 17 sits-1.4.2/sits/man/sits_run_examples.Rd | 10 sits-1.4.2/sits/man/sits_run_tests.Rd | 9 sits-1.4.2/sits/man/sits_sample.Rd | 30 sits-1.4.2/sits/man/sits_segment.Rd | 136 - sits-1.4.2/sits/man/sits_select.Rd | 30 sits-1.4.2/sits/man/sits_sgolay.Rd | 20 sits-1.4.2/sits/man/sits_show_prediction.Rd | 4 sits-1.4.2/sits/man/sits_slic.Rd |only sits-1.4.2/sits/man/sits_smooth.Rd | 105 - sits-1.4.2/sits/man/sits_som.Rd | 4 sits-1.4.2/sits/man/sits_som_clean_samples.Rd | 3 sits-1.4.2/sits/man/sits_stats.Rd | 2 sits-1.4.2/sits/man/sits_tae.Rd | 7 sits-1.4.2/sits/man/sits_tempcnn.Rd | 9 sits-1.4.2/sits/man/sits_timeline.Rd | 23 sits-1.4.2/sits/man/sits_to_csv.Rd | 16 sits-1.4.2/sits/man/sits_train.Rd | 16 sits-1.4.2/sits/man/sits_tuning.Rd | 19 sits-1.4.2/sits/man/sits_tuning_hparams.Rd | 4 sits-1.4.2/sits/man/sits_uncertainty.Rd | 7 sits-1.4.2/sits/man/sits_uncertainty_sampling.Rd | 31 sits-1.4.2/sits/man/sits_validate.Rd | 25 sits-1.4.2/sits/man/sits_variance.Rd | 79 sits-1.4.2/sits/man/sits_view.Rd | 121 - sits-1.4.2/sits/man/sits_whittaker.Rd | 19 sits-1.4.2/sits/man/summary.class_cube.Rd | 19 sits-1.4.2/sits/man/summary.raster_cube.Rd | 21 sits-1.4.2/sits/man/summary.sits.Rd | 8 sits-1.4.2/sits/man/summary.sits_accuracy.Rd | 14 sits-1.4.2/sits/man/summary.sits_area_accuracy.Rd | 7 sits-1.4.2/sits/man/tick-sits_labels-set-tick.Rd | 12 sits-1.4.2/sits/src/RcppExports.cpp | 71 sits-1.4.2/sits/src/kernel.cpp | 33 sits-1.4.2/sits/src/sample_points.cpp |only sits-1.4.2/sits/tests/testthat/Rplots.pdf |only sits-1.4.2/sits/tests/testthat/test-accuracy.R | 96 - sits-1.4.2/sits/tests/testthat/test-active_learning.R | 9 sits-1.4.2/sits/tests/testthat/test-api_block.R | 4 sits-1.4.2/sits/tests/testthat/test-api_point.R | 4 sits-1.4.2/sits/tests/testthat/test-apply.R | 47 sits-1.4.2/sits/tests/testthat/test-bands.R |only sits-1.4.2/sits/tests/testthat/test-check.R | 30 sits-1.4.2/sits/tests/testthat/test-classification.R | 7 sits-1.4.2/sits/tests/testthat/test-clustering.R | 16 sits-1.4.2/sits/tests/testthat/test-color.R | 55 sits-1.4.2/sits/tests/testthat/test-combine_predictions.R | 21 sits-1.4.2/sits/tests/testthat/test-config.R | 51 sits-1.4.2/sits/tests/testthat/test-cube.R | 823 ++++++-- sits-1.4.2/sits/tests/testthat/test-cube_copy.R | 106 - sits-1.4.2/sits/tests/testthat/test-data.R | 331 +-- sits-1.4.2/sits/tests/testthat/test-debug.R |only sits-1.4.2/sits/tests/testthat/test-factory.R | 23 sits-1.4.2/sits/tests/testthat/test-file_info.R | 35 sits-1.4.2/sits/tests/testthat/test-internals.R | 1 sits-1.4.2/sits/tests/testthat/test-labels.R | 21 sits-1.4.2/sits/tests/testthat/test-mixture_model.R | 56 sits-1.4.2/sits/tests/testthat/test-ml.R | 21 sits-1.4.2/sits/tests/testthat/test-mosaic.R | 13 sits-1.4.2/sits/tests/testthat/test-parallel.R | 3 sits-1.4.2/sits/tests/testthat/test-plot.R | 55 sits-1.4.2/sits/tests/testthat/test-predictors.R | 8 sits-1.4.2/sits/tests/testthat/test-raster.R | 145 + sits-1.4.2/sits/tests/testthat/test-reclassify.R | 104 - sits-1.4.2/sits/tests/testthat/test-regularize.R | 203 +- sits-1.4.2/sits/tests/testthat/test-roi.R | 54 sits-1.4.2/sits/tests/testthat/test-samples.R | 4 sits-1.4.2/sits/tests/testthat/test-segmentation.R | 94 - sits-1.4.2/sits/tests/testthat/test-sf.R |only sits-1.4.2/sits/tests/testthat/test-som.R | 2 sits-1.4.2/sits/tests/testthat/test-space-time-operations.R | 25 sits-1.4.2/sits/tests/testthat/test-summary.R | 48 sits-1.4.2/sits/tests/testthat/test-tibble.R | 35 sits-1.4.2/sits/tests/testthat/test-tuning.R | 6 sits-1.4.2/sits/tests/testthat/test-uncertainty.R | 29 sits-1.4.2/sits/tests/testthat/test-utils.R |only sits-1.4.2/sits/tests/testthat/test-variance.R | 23 sits-1.4.2/sits/tests/testthat/test-view.R | 142 + 305 files changed, 14996 insertions(+), 8412 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-28 0.3.4
2019-12-05 0.3.3
2018-12-20 0.3.2
2017-11-21 0.3.1
2017-11-10 0.3.0
2017-04-04 0.2.4
2016-10-12 0.2.3
2016-09-24 0.2.2
2016-08-26 0.2.1
2016-05-24 0.2.0
2016-05-10 0.1.9
Title: Utility Functions for Production R Code
Description: A suite of utility functions providing functionality commonly
needed for production level projects such as logging, error handling,
cache management and date-time parsing. Functions for date-time parsing and
formatting require that time zones be specified explicitly, avoiding a common
source of error when working with environmental time series.
Author: Jonathan Callahan [aut, cre],
Eli Grosman [ctb],
Spencer Pease [ctb],
Thomas Bergamaschi [ctb]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaCoreUtils versions 0.4.16 dated 2023-08-29 and 0.5.0 dated 2023-10-28
MazamaCoreUtils-0.4.16/MazamaCoreUtils/R/pylogger.R |only MazamaCoreUtils-0.5.0/MazamaCoreUtils/DESCRIPTION | 12 MazamaCoreUtils-0.5.0/MazamaCoreUtils/MD5 | 74 +-- MazamaCoreUtils-0.5.0/MazamaCoreUtils/NAMESPACE | 2 MazamaCoreUtils-0.5.0/MazamaCoreUtils/NEWS.md | 19 MazamaCoreUtils-0.5.0/MazamaCoreUtils/R/MazamaCoreUtils.R | 4 MazamaCoreUtils-0.5.0/MazamaCoreUtils/R/createLocationID.R |only MazamaCoreUtils-0.5.0/MazamaCoreUtils/R/createLocationMask.R |only MazamaCoreUtils-0.5.0/MazamaCoreUtils/R/initializeLogging.R | 16 MazamaCoreUtils-0.5.0/MazamaCoreUtils/R/timeStamp.R | 9 MazamaCoreUtils-0.5.0/MazamaCoreUtils/R/utils-flog.logger.R | 19 MazamaCoreUtils-0.5.0/MazamaCoreUtils/R/utils-location.R | 128 ----- MazamaCoreUtils-0.5.0/MazamaCoreUtils/R/utils-logging.R |only MazamaCoreUtils-0.5.0/MazamaCoreUtils/README.md | 20 MazamaCoreUtils-0.5.0/MazamaCoreUtils/inst/doc/cache-management.Rmd | 8 MazamaCoreUtils-0.5.0/MazamaCoreUtils/inst/doc/cache-management.html | 197 ++++---- MazamaCoreUtils-0.5.0/MazamaCoreUtils/inst/doc/date-parsing.Rmd | 2 MazamaCoreUtils-0.5.0/MazamaCoreUtils/inst/doc/date-parsing.html | 16 MazamaCoreUtils-0.5.0/MazamaCoreUtils/inst/doc/error-handling.html | 225 ++++----- MazamaCoreUtils-0.5.0/MazamaCoreUtils/inst/doc/logging.html | 235 +++++----- MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/MazamaCoreUtils.Rd | 4 MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/createLocationID.Rd | 42 + MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/createLocationMask.Rd |only MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/flog.appender.Rd |only MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/logLevels.Rd | 2 MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/logger.debug.Rd | 2 MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/logger.error.Rd | 2 MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/logger.fatal.Rd | 2 MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/logger.info.Rd | 2 MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/logger.isInitialized.Rd | 2 MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/logger.setLevel.Rd | 2 MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/logger.setup.Rd | 2 MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/logger.trace.Rd | 2 MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/logger.warn.Rd | 2 MazamaCoreUtils-0.5.0/MazamaCoreUtils/man/timeStamp.Rd | 3 MazamaCoreUtils-0.5.0/MazamaCoreUtils/tests/testthat/test-createLocationID.R | 75 ++- MazamaCoreUtils-0.5.0/MazamaCoreUtils/tests/testthat/test-initializeLogging.R | 28 + MazamaCoreUtils-0.5.0/MazamaCoreUtils/tests/testthat/test-locationUtils.R | 61 +- MazamaCoreUtils-0.5.0/MazamaCoreUtils/tests/testthat/test-timeStamp.R | 12 MazamaCoreUtils-0.5.0/MazamaCoreUtils/vignettes/cache-management.Rmd | 8 MazamaCoreUtils-0.5.0/MazamaCoreUtils/vignettes/date-parsing.Rmd | 2 41 files changed, 644 insertions(+), 597 deletions(-)
More information about MazamaCoreUtils at CRAN
Permanent link
Title: Visualization and Tools for Ichimoku Kinko Hyo Strategies
Description: An implementation of 'Ichimoku Kinko Hyo', also commonly known as
'cloud charts'. Static and interactive visualizations with tools for
creating, backtesting and development of quantitative 'ichimoku' strategies.
As described in Sasaki (1996, ISBN:4925152009), the technique is a refinement
on candlestick charting, originating from Japan and now in widespread use in
technical analysis worldwide. Translating as 'one-glance equilibrium chart',
it allows the price action and market structure of financial securities to
be determined 'at-a-glance'. Incorporates an interface with the OANDA
fxTrade API <https://developer.oanda.com/> for retrieving historical and
live streaming price data for major currencies, metals, commodities,
government bonds and stock indices.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between ichimoku versions 1.4.9 dated 2023-09-03 and 1.4.10 dated 2023-10-28
DESCRIPTION | 6 ++--- MD5 | 42 +++++++++++++++++++------------------- NEWS.md | 4 +++ R/data.R | 12 +++++------ R/ichimoku-package.R | 52 ++++++++++++++++++++++++------------------------ R/ichimoku.R | 36 ++++++++++++++++----------------- R/oanda.R | 24 +++++++++++----------- R/strat.R | 32 ++++++++++++++--------------- R/switch.R | 11 +++++----- README.md | 3 +- inst/doc/reference.R | 4 +-- inst/doc/reference.Rmd | 2 - inst/doc/reference.html | 2 - inst/doc/strategies.R | 2 - inst/doc/utilities.R | 2 - inst/doc/xoanda.R | 2 - man/ichimoku-package.Rd | 52 ++++++++++++++++++++++++------------------------ man/ichimoku.Rd | 36 ++++++++++++++++----------------- man/oanda_stream.Rd | 24 +++++++++++----------- man/sample_ohlc_data.Rd | 12 +++++------ man/strat.Rd | 32 ++++++++++++++--------------- vignettes/reference.Rmd | 2 - 22 files changed, 200 insertions(+), 194 deletions(-)
Title: Functions to Create Publication-Quality Plots
Description: Contains several plotting functions such as barplots, scatterplots, heatmaps, as well as functions to combine plots and assist in the creation of these plots. These functions will give users great ease of use and customization options in broad use for biomedical applications, as well as general purpose plotting. Each of the functions also provides valid default settings to make plotting data more efficient and producing high quality plots with standard colour schemes simpler. All functions within this package are capable of producing plots that are of the quality to be presented in scientific publications and journals. P'ng et al.; BPG: Seamless, automated and interactive visualization of scientific data; BMC Bioinformatics 2019 <doi:10.1186/s12859-019-2610-2>.
Author: Paul Boutros [aut, cre],
Christine P'ng [ctb],
Jeff Green [ctb],
Stephenie Prokopec [ctb],
Ontario Institute for Cancer Research [cph],
The R Core Team [cph],
The R Foundation [cph],
Robert Gentleman [ctb],
Ross Ihaka [ctb],
Caden Bugh [ctb],
Dan Kni [...truncated...]
Maintainer: Paul Boutros <PBoutros@mednet.ucla.edu>
Diff between BoutrosLab.plotting.general versions 7.0.10 dated 2023-10-24 and 7.1.0 dated 2023-10-28
DESCRIPTION | 19 +- MD5 | 35 ++- NEWS | 12 + R/auto.axis.R | 410 ++++++++++++++++++++++---------------------- R/create.boxplot.R | 62 ++---- R/create.hexbinplot.R | 62 ++---- R/create.manhattanplot.R | 60 ++---- R/create.scatterplot.R | 62 ++---- inst/doc/PlottingGuide.Rnw | 197 +++++++++++++++++---- inst/doc/PlottingGuide.pdf |binary man/auto.axis.Rd | 26 +- man/create.barplot.Rd | 26 ++ man/create.boxplot.Rd | 26 ++ man/create.hexbinplot.Rd | 26 ++ man/create.manhattanplot.Rd | 26 ++ man/create.scatterplot.Rd | 52 +---- tests/testthat |only tests/testthat.R |only vignettes/PlottingGuide.Rnw | 197 +++++++++++++++++---- 19 files changed, 776 insertions(+), 522 deletions(-)
More information about BoutrosLab.plotting.general at CRAN
Permanent link
Title: Adjusted Limited Dependent Variable Mixture Models
Description: The goal of the package 'aldvmm' is to fit adjusted limited
dependent variable mixture models of health state utilities. Adjusted
limited dependent variable mixture models are finite mixtures of normal
distributions with an accumulation of density mass at the limits, and a gap
between 100% quality of life and the next smaller utility value. The
package 'aldvmm' uses the likelihood and expected value functions proposed
by Hernandez Alava and Wailoo (2015) <doi:10.1177/1536867X1501500307> using
normal component distributions and a multinomial logit model of
probabilities of component membership.
Author: Mark Pletscher [aut, cre, cph],
Achim Zeileis [ctb]
Maintainer: Mark Pletscher <pletscher.mark@gmail.com>
Diff between aldvmm versions 0.8.7 dated 2023-07-08 and 0.8.8 dated 2023-10-28
DESCRIPTION | 10 +- MD5 | 80 ++++++++--------- NAMESPACE | 2 NEWS.md | 5 - R/aldvmm.R | 39 ++++---- R/aldvmm.init.R | 22 +++- R/aldvmm.ll.R | 2 inst/doc/html_vignette.R | 22 ++-- inst/doc/html_vignette.Rmd | 32 +++--- inst/doc/html_vignette.html | 172 ++++++++++++++++++------------------- man/aldvmm.Rd | 23 ++-- man/aldvmm.check.Rd | 6 - man/aldvmm.cv.Rd | 2 man/aldvmm.gr.Rd | 2 man/aldvmm.init.Rd | 13 +- man/aldvmm.ll.Rd | 4 man/aldvmm.sc.Rd | 2 tests/testthat/test.aldvmm.R | 20 ++-- tests/testthat/test.aldvmm.init.R | 96 ++++++++++++++------ vignettes/df.RData |binary vignettes/html_vignette.Rmd | 32 +++--- vignettes/plot_box_se.png |binary vignettes/plot_box_yhat.png |binary vignettes/plot_comp_mhl_bfgs.png |binary vignettes/plot_comp_mhl_hjn.png |binary vignettes/plot_comp_mhl_nlminb.png |binary vignettes/plot_comp_mhl_nm.png |binary vignettes/plot_comp_pred.png |binary vignettes/plot_hist_obs.png |binary vignettes/plot_hist_pred.png |binary vignettes/tab_comp_coef.RData |binary vignettes/tab_comp_cov.RData |binary vignettes/tab_comp_ll.RData |binary vignettes/tab_comp_mae.RData |binary vignettes/tab_comp_mse.RData |binary vignettes/tab_comp_time.RData |binary vignettes/tab_sum_stata1.RData |binary vignettes/tab_sum_stata2.RData |binary vignettes/tab_sum_stata3.RData |binary vignettes/tab_sum_stata4.RData |binary vignettes/textout.RData |binary 41 files changed, 325 insertions(+), 261 deletions(-)