Title: Additions and Extensions of the 'VGAM' Package
Description: Extending the functionalities of the 'VGAM' package with
additional functions and datasets. At present, 'VGAMextra'
comprises new family functions (ffs) to estimate several time
series models by maximum likelihood using Fisher scoring,
unlike popular packages in CRAN relying on optim(), including
ARMA-GARCH-like models, the Order-(p, d, q) ARIMAX model (non-
seasonal), the Order-(p) VAR model, error correction models
for cointegrated time series, and ARMA-structures with Student-t
errors. For independent data, new ffs to estimate the inverse-
Weibull, the inverse-gamma, the generalized beta of the second
kind and the general multivariate normal distributions are
available. In addition, 'VGAMextra' incorporates new VGLM-links
for the mean-function, and the quantile-function (as an alternative
to ordinary quantile modelling) of several 1-parameter distributions,
that are compatible with the class of VGLM/VGAM family functions.
Currently, only fixed-effects models are implemented. All fun [...truncated...]
Author: Victor Miranda [aut, cre, cph],
Thomas Yee [ctb, ths, cph]
Maintainer: Victor Miranda <victor.miranda@aut.ac.nz>
Diff between VGAMextra versions 0.0-5 dated 2021-05-24 and 0.0-6 dated 2023-10-30
DESCRIPTION | 10 +-- MD5 | 42 +++++++++------ NAMESPACE | 12 +++- NEWS | 11 +++- R/InfoAttach.R | 2 R/TSfamilyLog.R | 45 ++++++++++++---- R/TSfamilyNegBin.R | 106 +++++++++++++++++++++++++++++++++------ R/TSfamilyPoisson.R | 35 ++++++++---- R/TSfamilyVGLM.INGARCH.R | 24 +++++--- R/TSfamilyYulesimon.R | 62 ++++++++++++++++------ R/Trunclognormalff.R |only R/Truncnormalff.R |only R/dpqr.trunclognormal.R |only R/dpqr.truncnormal.R |only man/benini1Qlink.Rd | 4 - man/checkTS.VGAMextra.Rd | 6 +- man/gamma1Qlink.Rd | 10 ++- man/maxwellQlink.Rd | 6 +- man/notDocumentedYetVGAMextra.Rd | 11 +++- man/rayleighQlink.Rd | 4 - man/toppleQlink.Rd | 4 - man/trinormalCovff.Rd | 8 +- man/trunclognormalUC.Rd |only man/trunclognormalff.Rd |only man/truncnormalUC.Rd |only man/truncnormalff.Rd |only 26 files changed, 290 insertions(+), 112 deletions(-)
Title: Simulation of Fisher Bingham and Related Directional
Distributions
Description: Simulation methods for the Fisher Bingham distribution on the unit sphere, the matrix Bingham distribution on a Grassmann manifold, the matrix Fisher distribution on SO(3), and the bivariate von Mises sine model on the torus.
The methods use an acceptance/rejection simulation algorithm for the Bingham distribution and are described fully by Kent, Ganeiber and Mardia (2018) <doi:10.1080/10618600.2017.1390468>.
These methods supersede earlier MCMC simulation methods and are more general than earlier simulation methods.
The methods can be slower in specific situations where there are existing non-MCMC simulation methods (see Section 8 of Kent, Ganeiber and Mardia (2018) <doi:10.1080/10618600.2017.1390468> for further details).
Author: John Kent [aut, cph],
Kassel Liam Hingee [cre]
Maintainer: Kassel Liam Hingee <kassel.hingee@anu.edu.au>
Diff between simdd versions 1.1-1 dated 2023-02-22 and 1.1-2 dated 2023-10-30
DESCRIPTION | 15 ++++++++------- MD5 | 14 ++++++++------ NEWS.md | 7 +++++++ R/simdd.r | 14 +++++++++----- build/partial.rdb |binary man/rFisherBingham.Rd | 19 +++++++++++++++---- man/simdd-package.Rd | 9 --------- tests |only 8 files changed, 47 insertions(+), 31 deletions(-)
Title: Flexible Time-to-Event Figures
Description: Ease the creation of time-to-event (i.e. survival) endpoint
figures. The modular functions create figures ready for publication.
Each of the functions that add to or modify the figure are written as
proper 'ggplot2' geoms or stat methods, allowing the functions from
this package to be combined with any function or customization from
'ggplot2' and other 'ggplot2' extension packages.
Author: Daniel D. Sjoberg [aut, cre, cph]
,
Mark Baillie [aut],
Charlotta Fruechtenicht [aut] ,
Steven Haesendonckx [aut] ,
Tim Treis [aut]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between ggsurvfit versions 0.3.1 dated 2023-08-28 and 1.0.0 dated 2023-10-30
DESCRIPTION | 8 MD5 | 197 +-- NAMESPACE | 1 NEWS.md | 8 R/add_censor_mark.R | 16 R/add_confidence_interval.R | 6 R/add_legend_title.R | 3 R/add_pvalue.R | 6 R/add_risktable.R | 19 R/add_risktable_strata_symbol.R | 9 R/ggcuminc.R | 9 R/ggsurvfit.R | 85 + R/ggsurvfit_align_plots.R |only R/ggsurvfit_options.R |only R/print.R | 1 R/scale_ggsurvfit.R | 2 R/survfit2_p.R | 2 R/theme_ggsurvfit.R | 3 R/theme_risktable.R | 4 R/utils-add_risktable.R | 68 - README.md | 15 inst/WORDLIST | 2 inst/doc/themes.R | 2 man/add_censor_mark.Rd | 3 man/add_confidence_interval.Rd | 6 man/add_legend_title.Rd | 3 man/add_pvalue.Rd | 6 man/add_risktable.Rd | 20 man/add_risktable_strata_symbol.Rd | 5 man/figures/README-unnamed-chunk-2-1.png |binary man/ggcuminc.Rd | 9 man/ggsurvfit.Rd | 9 man/ggsurvfit_align_plots.Rd |only man/ggsurvfit_options.Rd |only man/survfit2_p.Rd | 2 man/theme_ggsurvfit.Rd | 3 man/theme_risktable.Rd | 4 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/add_censor_mark/cuminc2-censor-mark-all-outcomes.svg | 8 tests/testthat/_snaps/add_censor_mark/cuminc2-censor-mark.svg | 4 tests/testthat/_snaps/add_censor_mark/cuminc3-censor-mark-all-outcomes.svg | 556 +++++----- tests/testthat/_snaps/add_censor_mark/cuminc3-censor-mark.svg | 294 ++--- tests/testthat/_snaps/add_confidence_interval/cuminc2-confidence-interval-all-outcomes.svg | 32 tests/testthat/_snaps/add_confidence_interval/cuminc2-confidence-interval.svg | 16 tests/testthat/_snaps/add_confidence_interval/cuminc3-confidence-interval-all-outcomes.svg | 152 +- tests/testthat/_snaps/add_confidence_interval/cuminc3-confidence-interval.svg | 86 - tests/testthat/_snaps/add_pvalue/cuminc2-pvalue.svg | 25 tests/testthat/_snaps/add_quantile/cuminc2-quantile-all-outcomes.svg | 8 tests/testthat/_snaps/add_quantile/cuminc2-quantile.svg | 4 tests/testthat/_snaps/add_quantile/cuminc3-quantile-all-outcomes.svg | 74 - tests/testthat/_snaps/add_quantile/cuminc3-quantile.svg | 44 tests/testthat/_snaps/add_risktable/add-risktable-overall1.svg | 9 tests/testthat/_snaps/add_risktable/add-risktable-overall2.svg | 9 tests/testthat/_snaps/add_risktable/add-risktable-weights.svg | 9 tests/testthat/_snaps/add_risktable/cuminc1-risktable-all-outcomes.svg | 9 tests/testthat/_snaps/add_risktable/cuminc1-risktable.svg | 9 tests/testthat/_snaps/add_risktable/cuminc2-risktable-all-outcomes.svg | 17 tests/testthat/_snaps/add_risktable/cuminc2-risktable.svg | 13 tests/testthat/_snaps/add_risktable/cuminc3-risktable-all-outcomes.svg | 159 +- tests/testthat/_snaps/add_risktable/cuminc3-risktable.svg | 135 +- tests/testthat/_snaps/add_risktable/sf1-risktable-custom-stats-and-label.svg | 9 tests/testthat/_snaps/add_risktable/sf1-risktable-custom-stats-and-label2.svg | 9 tests/testthat/_snaps/add_risktable/sf1-risktable-height.svg | 9 tests/testthat/_snaps/add_risktable/sf1-risktable.svg | 9 tests/testthat/_snaps/add_risktable/sf2-risktable-custom-stats-and-label.svg | 9 tests/testthat/_snaps/add_risktable/sf2-risktable-custom-stats-and-label2.svg | 9 tests/testthat/_snaps/add_risktable/sf2-risktable.svg | 9 tests/testthat/_snaps/add_risktable/sf3-risktable-custom-stats-and-label.svg | 9 tests/testthat/_snaps/add_risktable/sf3-risktable-custom-stats-and-label2.svg | 9 tests/testthat/_snaps/add_risktable/sf3-risktable.svg | 9 tests/testthat/_snaps/add_risktable_strata_symbol/add-risktable-strata-symbol-circle.svg | 9 tests/testthat/_snaps/add_risktable_strata_symbol/add-risktable-strata-symbol-default.svg | 9 tests/testthat/_snaps/add_risktable_strata_symbol/add-risktable-strata-symbol-uni.svg | 11 tests/testthat/_snaps/ggcuminc/cuminc2-ggcuminc-all-outcomes.svg | 8 tests/testthat/_snaps/ggcuminc/cuminc2-ggcuminc.svg | 4 tests/testthat/_snaps/ggcuminc/cuminc3-ggcuminc-all-outcomes.svg | 68 - tests/testthat/_snaps/ggcuminc/cuminc3-ggcuminc.svg | 42 tests/testthat/_snaps/ggsurvfit/sf2-ggsurvfit-new-data-geom1.svg | 9 tests/testthat/_snaps/ggsurvfit/sf2-ggsurvfit-new-data-geom2.svg | 9 tests/testthat/_snaps/ggsurvfit_options |only tests/testthat/_snaps/theme_risktable/sf1-ggsurvfit-theme-risktable-boxed-symbol.svg | 13 tests/testthat/_snaps/theme_risktable/sf1-ggsurvfit-theme-risktable-boxed.svg | 9 tests/testthat/_snaps/theme_risktable/sf1-ggsurvfit-theme-risktable-default.svg | 9 tests/testthat/_snaps/theme_risktable/sf2-ggsurvfit-theme-risktable-boxed-symbol.svg | 17 tests/testthat/_snaps/theme_risktable/sf2-ggsurvfit-theme-risktable-boxed.svg | 9 tests/testthat/_snaps/theme_risktable/sf2-ggsurvfit-theme-risktable-default.svg | 9 tests/testthat/_snaps/theme_risktable/sf3-ggsurvfit-theme-risktable-boxed-symbol.svg | 37 tests/testthat/_snaps/theme_risktable/sf3-ggsurvfit-theme-risktable-boxed.svg | 9 tests/testthat/_snaps/theme_risktable/sf3-ggsurvfit-theme-risktable-default.svg | 9 tests/testthat/test-add_confidence_interval.R | 11 tests/testthat/test-add_pvalue.R | 11 tests/testthat/test-add_quantile.R | 39 tests/testthat/test-add_risktable.R | 25 tests/testthat/test-add_risktable_strata_symbol.R | 29 tests/testthat/test-ggcuminc.R | 24 tests/testthat/test-ggsurvfit.R | 3 tests/testthat/test-ggsurvfit_options.R |only tests/testthat/test-scale_ggsurvfit.R | 2 tests/testthat/test-stat_stepribbon.R | 2 tests/testthat/test-theme_risktable.R | 23 tests/testthat/test-tidy_survfit.R | 65 - 101 files changed, 1636 insertions(+), 1186 deletions(-)
Title: Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Description: This model fitting tool incorporates cyclic coordinate descent and
majorization-minimization approaches to fit a variety of regression models
found in large-scale observational healthcare data. Implementations focus
on computational optimization and fine-scale parallelization to yield
efficient inference in massive datasets. Please see:
Suchard, Simpson, Zorych, Ryan and Madigan (2013) <doi:10.1145/2414416.2414791>.
Author: Marc A. Suchard [aut, cre],
Martijn J. Schuemie [aut],
Trevor R. Shaddox [aut],
Yuxi Tian [aut],
Jianxiao Yang [aut],
Eric Kawaguchi [aut],
Sushil Mittal [ctb],
Observational Health Data Sciences and Informatics [cph],
Marcus Geelnard [cph, ctb] ,
Ru [...truncated...]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between Cyclops versions 3.3.1 dated 2023-04-11 and 3.4.0 dated 2023-10-30
DESCRIPTION | 13 - MD5 | 91 +++++----- NAMESPACE | 4 NEWS.md | 27 ++ R/Cyclops-package.R |only R/DataManagement.R | 4 R/ModelFit.R | 57 ++++-- R/NewDataConversion.R | 2 R/RcppExports.R | 12 + R/TimeEffects.R |only R/WeightBasedSearchControl.R |only build |only man/Cyclops-package.Rd |only man/Multitype.Rd | 2 man/aconfint.Rd | 4 man/appendSqlCyclopsData.Rd | 4 man/convertToCyclopsData.Rd | 22 +- man/convertToTimeVaryingCoef.Rd |only man/createControl.Rd | 2 man/createCyclopsData.Rd | 28 +-- man/createWeightBasedSearchControl.Rd |only man/fitCyclopsModel.Rd | 6 man/oxford.Rd | 14 - man/readCyclopsData.Rd | 50 ++--- man/splitTime.Rd |only src/Makevars.in | 1 src/RcppCyclopsInterface.cpp | 22 ++ src/RcppExports.cpp | 38 ++++ src/cyclops/CcdInterface.cpp | 51 ++++- src/cyclops/CyclicCoordinateDescent.cpp | 24 ++ src/cyclops/CyclicCoordinateDescent.h | 5 src/cyclops/Iterators.h | 55 +++++- src/cyclops/ModelData.cpp | 4 src/cyclops/drivers/AbstractCrossValidationDriver.cpp | 18 + src/cyclops/drivers/AbstractCrossValidationDriver.h | 2 src/cyclops/drivers/AutoSearchCrossValidationDriver.cpp | 2 src/cyclops/drivers/HierarchyAutoSearchCrossValidationDriver.cpp | 2 src/cyclops/drivers/HierarchyAutoSearchCrossValidationDriver.h | 2 src/cyclops/drivers/HierarchyGridSearchCrossValidationDriver.cpp | 2 src/cyclops/drivers/HierarchyGridSearchCrossValidationDriver.h | 4 src/cyclops/drivers/WeightBasedSelector.cpp |only src/cyclops/drivers/WeightBasedSelector.h |only src/cyclops/engine/ModelSpecifics.h | 8 src/cyclops/engine/ModelSpecifics.hpp | 20 -- src/cyclops/engine/ParallelLoops.h | 2 tests/testthat/test-cv.R | 20 ++ tests/testthat/test-dataConversionStratified.R | 3 tests/testthat/test-dataConversionUnstratified.R | 3 tests/testthat/test-outOfSample.R |only tests/testthat/test-predict.R | 4 tests/testthat/test-smallFineGray.R | 2 tools/configure.R | 4 52 files changed, 447 insertions(+), 193 deletions(-)
Title: A Poor Man's Dependency Free Recreation of 'dplyr'
Description: A replication of key functionality from 'dplyr' and the wider 'tidyverse' using only 'base'.
Author: Nathan Eastwood [aut, cre],
Etienne Bacher [ctb]
Maintainer: Nathan Eastwood <nathan.eastwood@icloud.com>
Diff between poorman versions 0.2.6 dated 2022-08-17 and 0.2.7 dated 2023-10-30
DESCRIPTION | 8 ++++---- MD5 | 29 ++++++++++++++++------------- NAMESPACE | 3 +++ NEWS.md | 10 ++++++++++ R/across.R | 4 ++-- R/fill.R |only R/group_utils.R | 3 ++- R/mutate.R | 3 +-- R/pivot_longer.R | 21 +++++++++++---------- R/pivot_wider.R | 14 +++++++------- README.md | 22 ++++++++++++++++++++++ build/vignette.rds |binary inst/doc/faq.html | 14 +++++++------- inst/tinytest/test_fill.R |only inst/tinytest/test_mutate.R | 2 +- man/across.Rd | 4 ++-- man/fill.Rd |only 17 files changed, 88 insertions(+), 49 deletions(-)
Title: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic
Phenomena
Description: Statistical methods for the modeling and monitoring of time series
of counts, proportions and categorical data, as well as for the modeling
of continuous-time point processes of epidemic phenomena.
The monitoring methods focus on aberration detection in count data time
series from public health surveillance of communicable diseases, but
applications could just as well originate from environmetrics,
reliability engineering, econometrics, or social sciences. The package
implements many typical outbreak detection procedures such as the
(improved) Farrington algorithm, or the negative binomial GLR-CUSUM
method of Hoehle and Paul (2008) <doi:10.1016/j.csda.2008.02.015>.
A novel CUSUM approach combining logistic and multinomial logistic
modeling is also included. The package contains several real-world data
sets, the ability to simulate outbreak data, and to visualize the
results of the monitoring in a temporal, spatial or spatio-temporal
fashion. A recent overview of the available mon [...truncated...]
Author: Michael Hoehle [aut, ths] ,
Sebastian Meyer [aut, cre] ,
Michaela Paul [aut],
Leonhard Held [ctb, ths],
Howard Burkom [ctb],
Thais Correa [ctb],
Mathias Hofmann [ctb],
Christian Lang [ctb],
Juliane Manitz [ctb],
Andrea Riebler [ctb],
Daniel Sabanes B [...truncated...]
Maintainer: Sebastian Meyer <seb.meyer@fau.de>
Diff between surveillance versions 1.21.1 dated 2023-05-19 and 1.22.0 dated 2023-10-30
surveillance-1.21.1/surveillance/R/gpc.poly-methods.R |only surveillance-1.21.1/surveillance/R/newtonRaphson.R |only surveillance-1.21.1/surveillance/man/inside.gpc.poly.Rd |only surveillance-1.21.1/surveillance/man/scale.gpc.poly.Rd |only surveillance-1.22.0/surveillance/DESCRIPTION | 15 - surveillance-1.22.0/surveillance/MD5 | 76 ++++------ surveillance-1.22.0/surveillance/NAMESPACE | 3 surveillance-1.22.0/surveillance/NEWS.md | 13 + surveillance-1.22.0/surveillance/R/epidataCS.R | 12 - surveillance-1.22.0/surveillance/R/hhh4.R | 24 --- surveillance-1.22.0/surveillance/R/intersectPolyCircle.R | 34 +--- surveillance-1.22.0/surveillance/R/options.R | 15 + surveillance-1.22.0/surveillance/R/spatial_tools.R | 28 +-- surveillance-1.22.0/surveillance/R/zzz.R | 23 --- surveillance-1.22.0/surveillance/build/partial.rdb |binary surveillance-1.22.0/surveillance/build/vignette.rds |binary surveillance-1.22.0/surveillance/inst/THANKS | 6 surveillance-1.22.0/surveillance/inst/doc/glrnb.pdf |binary surveillance-1.22.0/surveillance/inst/doc/hhh4.Rnw | 2 surveillance-1.22.0/surveillance/inst/doc/hhh4.pdf |binary surveillance-1.22.0/surveillance/inst/doc/hhh4_spacetime.Rnw | 2 surveillance-1.22.0/surveillance/inst/doc/hhh4_spacetime.pdf |binary surveillance-1.22.0/surveillance/inst/doc/monitoringCounts.pdf |binary surveillance-1.22.0/surveillance/inst/doc/surveillance.pdf |binary surveillance-1.22.0/surveillance/inst/doc/twinSIR.pdf |binary surveillance-1.22.0/surveillance/inst/doc/twinstim.pdf |binary surveillance-1.22.0/surveillance/man/addSeason2formula.Rd | 2 surveillance-1.22.0/surveillance/man/discpoly.Rd | 4 surveillance-1.22.0/surveillance/man/epidataCS.Rd | 6 surveillance-1.22.0/surveillance/man/imdepi.Rd | 5 surveillance-1.22.0/surveillance/man/intersectPolyCircle.Rd | 15 - surveillance-1.22.0/surveillance/man/polyAtBorder.Rd | 8 - surveillance-1.22.0/surveillance/man/sts_animate.Rd | 11 - surveillance-1.22.0/surveillance/man/surveillance-defunct.Rd | 56 ++++--- surveillance-1.22.0/surveillance/man/surveillance-package.Rd | 7 surveillance-1.22.0/surveillance/man/surveillance.options.Rd | 11 - surveillance-1.22.0/surveillance/man/twinstim.Rd | 2 surveillance-1.22.0/surveillance/man/twinstim_simulation.Rd | 1 surveillance-1.22.0/surveillance/man/unionSpatialPolygons.Rd | 23 +-- surveillance-1.22.0/surveillance/vignettes/hhh4.Rnw | 2 surveillance-1.22.0/surveillance/vignettes/hhh4_spacetime.Rnw | 2 41 files changed, 171 insertions(+), 237 deletions(-)
Title: 1d Goodness of Fit Tests
Description: Routines that allow the user to run a large number of goodness-of-fit tests.
It allows for data to be continuous or discrete. It includes routines to estimate
the power of the tests and display them as a power graph.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between Rgof versions 1.2.1 dated 2023-10-21 and 1.2.2 dated 2023-10-30
DESCRIPTION | 6 - MD5 | 30 ++++---- NEWS.md | 3 R/RcppExports.R | 6 - R/gof_test_cont.R | 2 inst/doc/Rgof.R | 35 ++++----- inst/doc/Rgof.Rmd | 81 ++++++++++++++-------- inst/doc/Rgof.html | 166 +++++++++++++++++++++++++++------------------- inst/examples/TS_disc.cpp | 17 +--- man/TS_disc.Rd | 4 - src/RcppExports.cpp | 8 +- src/TS_cont.cpp | 2 src/TS_disc.cpp | 14 +-- src/TS_disc.h | 2 src/power_disc.cpp | 4 - vignettes/Rgof.Rmd | 81 ++++++++++++++-------- 16 files changed, 270 insertions(+), 191 deletions(-)
Title: A Collection of Efficient and Extremely Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column and row wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), are some of the many fast functions. References: a) Tsagris M., Papadakis M. (2018). Taking R to its limits: 70+ tips. PeerJ Preprints 6:e26605v1 <doi:10.7287/peerj.preprints.26605v1>. b) Tsagris M. and Papadakis M. (2018). Forward regression in R: from the extreme slow to the extreme fast. Journal of Data Science, 16(4): 771--780. <doi:10.6339/JDS.201810_16(4).00006>. c) Chatzipantsiou C., Dimitriadis M., Papadakis M. and Tsagris M. (2020). Extremely Efficient Permutation and Bootstrap Hypothesis Tests Using RHypothesis Tests Using R. Journal of Modern Applied Statistical Methods, 18(2), eP2898. <doi:10.48550/arXiv.1806.10947>.
Author: Manos Papadakis [aut, cre, cph],
Michail Tsagris [aut],
Marios Dimitriadis [ctb],
Stefanos Fafalios [aut],
Ioannis Tsamardinos [ctb],
Matteo Fasiolo [ctb],
Giorgos Borboudakis [ctb],
John Burkardt [ctb],
Changliang Zou [ctb],
Kleanthi Lakiotaki [ctb] [...truncated...]
Maintainer: Manos Papadakis <rfastofficial@gmail.com>
Diff between Rfast versions 2.0.8 dated 2023-07-03 and 2.0.9 dated 2023-10-30
Rfast-2.0.8/Rfast/man/colMads.Rd |only Rfast-2.0.8/Rfast/man/colMedians.Rd |only Rfast-2.0.8/Rfast/man/colOrder.Rd |only Rfast-2.0.8/Rfast/man/colPmax.Rd |only Rfast-2.0.8/Rfast/man/colRanks.Rd |only Rfast-2.0.8/Rfast/man/colnth.Rd |only Rfast-2.0.8/Rfast/man/mad2.Rd |only Rfast-2.0.8/Rfast/man/med.Rd |only Rfast-2.0.8/Rfast/man/total.dist.Rd |only Rfast-2.0.8/Rfast/src/dists_vec.cpp |only Rfast-2.0.8/Rfast/src/partial_sort.cpp |only Rfast-2.0.8/Rfast/src/rvmf_h.cpp |only Rfast-2.0.8/Rfast/src/sort_mat.cpp |only Rfast-2.0.9/Rfast/DESCRIPTION | 40 Rfast-2.0.9/Rfast/MD5 | 174 +- Rfast-2.0.9/Rfast/NAMESPACE | 3 Rfast-2.0.9/Rfast/NEWS.md | 50 Rfast-2.0.9/Rfast/R/All.R | 8 Rfast-2.0.9/Rfast/R/Dist.R | 23 Rfast-2.0.9/Rfast/R/Order.R | 14 Rfast-2.0.9/Rfast/R/Rank.R | 12 Rfast-2.0.9/Rfast/R/Sort.R | 20 Rfast-2.0.9/Rfast/R/Var.R | 14 Rfast-2.0.9/Rfast/R/column-wise_mle.R | 3 Rfast-2.0.9/Rfast/R/count_value.R | 8 Rfast-2.0.9/Rfast/R/dista.R | 40 Rfast-2.0.9/Rfast/R/eachcol.apply.R | 6 Rfast-2.0.9/Rfast/R/group.R | 8 Rfast-2.0.9/Rfast/R/mad2.R | 10 Rfast-2.0.9/Rfast/R/mean.R | 10 Rfast-2.0.9/Rfast/R/median.R | 8 Rfast-2.0.9/Rfast/R/min_max.R | 12 Rfast-2.0.9/Rfast/R/nth.R | 8 Rfast-2.0.9/Rfast/R/onAttach.R | 2 Rfast-2.0.9/Rfast/R/positive_mle.R | 4 Rfast-2.0.9/Rfast/R/random_values_simulation.R | 170 +- Rfast-2.0.9/Rfast/R/range.R | 4 Rfast-2.0.9/Rfast/R/rmdp.R | 4 Rfast-2.0.9/Rfast/R/sum.R | 8 Rfast-2.0.9/Rfast/R/variable_selection.R | 2 Rfast-2.0.9/Rfast/inst/include/Rfast/FactorVector.hpp |only Rfast-2.0.9/Rfast/inst/include/Rfast/assertions.hpp |only Rfast-2.0.9/Rfast/inst/include/Rfast/helpers.hpp | 430 +---- Rfast-2.0.9/Rfast/inst/include/Rfast/matrix.hpp | 777 ++++----- Rfast-2.0.9/Rfast/inst/include/Rfast/parallel.h |only Rfast-2.0.9/Rfast/inst/include/Rfast/templates.h | 59 Rfast-2.0.9/Rfast/inst/include/Rfast/types.hpp | 11 Rfast-2.0.9/Rfast/man/Dist.Rd | 44 Rfast-2.0.9/Rfast/man/Mad.Rd |only Rfast-2.0.9/Rfast/man/Median.Rd |only Rfast-2.0.9/Rfast/man/Order.Rd |only Rfast-2.0.9/Rfast/man/Pmax.Rd | 29 Rfast-2.0.9/Rfast/man/Rank.Rd | 54 Rfast-2.0.9/Rfast/man/Rfast-package.Rd | 48 Rfast-2.0.9/Rfast/man/Sort.Rd | 5 Rfast-2.0.9/Rfast/man/XopY.sum.Rd | 5 Rfast-2.0.9/Rfast/man/checkNamespace.Rd | 125 - Rfast-2.0.9/Rfast/man/coeff.Rd |only Rfast-2.0.9/Rfast/man/colAny.Rd | 8 Rfast-2.0.9/Rfast/man/colMins.Rd | 12 Rfast-2.0.9/Rfast/man/colVars.Rd | 12 Rfast-2.0.9/Rfast/man/colmeans.Rd | 10 Rfast-2.0.9/Rfast/man/colrange.Rd | 6 Rfast-2.0.9/Rfast/man/colsums.Rd | 9 Rfast-2.0.9/Rfast/man/count_value.Rd | 8 Rfast-2.0.9/Rfast/man/dista.Rd | 52 Rfast-2.0.9/Rfast/man/eel.test2.Rd | 2 Rfast-2.0.9/Rfast/man/group.Rd | 2 Rfast-2.0.9/Rfast/man/nth.Rd |only Rfast-2.0.9/Rfast/man/rmdp.Rd | 5 Rfast-2.0.9/Rfast/man/sort_mat.Rd | 8 Rfast-2.0.9/Rfast/man/ttests.Rd | 1 Rfast-2.0.9/Rfast/src/Coeff.cpp |only Rfast-2.0.9/Rfast/src/Coeff.h |only Rfast-2.0.9/Rfast/src/Dist.h |only Rfast-2.0.9/Rfast/src/Makevars | 2 Rfast-2.0.9/Rfast/src/Makevars.win | 2 Rfast-2.0.9/Rfast/src/Random.h |only Rfast-2.0.9/Rfast/src/Rank.cpp | 146 - Rfast-2.0.9/Rfast/src/Sort.cpp | 499 ++++- Rfast-2.0.9/Rfast/src/check.cpp | 12 Rfast-2.0.9/Rfast/src/col_row_utilities.cpp | 35 Rfast-2.0.9/Rfast/src/col_row_utilities_p.cpp | 109 - Rfast-2.0.9/Rfast/src/cts_rf.cpp | 4 Rfast-2.0.9/Rfast/src/dista.cpp | 1027 +++++++++++- Rfast-2.0.9/Rfast/src/dists.cpp | 1514 ++++++++++++++---- Rfast-2.0.9/Rfast/src/each.cpp | 314 ++- Rfast-2.0.9/Rfast/src/energy.cpp | 17 Rfast-2.0.9/Rfast/src/init.c | 1006 +++++------ Rfast-2.0.9/Rfast/src/mn.cpp | 78 Rfast-2.0.9/Rfast/src/mn.h | 82 Rfast-2.0.9/Rfast/src/rmdp.cpp | 169 +- Rfast-2.0.9/Rfast/src/rvmf.cpp |only Rfast-2.0.9/Rfast/src/sort_unique.cpp | 2 Rfast-2.0.9/Rfast/src/spat_med.cpp | 74 Rfast-2.0.9/Rfast/src/system_files.cpp | 8 Rfast-2.0.9/Rfast/src/system_files.h | 2 Rfast-2.0.9/Rfast/src/total_dista.cpp | 667 +++++++ Rfast-2.0.9/Rfast/src/total_dists.cpp | 763 ++++++--- Rfast-2.0.9/Rfast/src/utilities.cpp | 1429 +++++++++------- Rfast-2.0.9/Rfast/src/weibull_mle.cpp | 7 101 files changed, 6760 insertions(+), 3595 deletions(-)
Title: Tools for Easier Analysis of Meteorological Fields
Description: Many useful functions and extensions for dealing
with meteorological data in the tidy data framework. Extends 'ggplot2'
for better plotting of scalar and vector fields and provides commonly
used analysis methods in the atmospheric sciences.
Author: Elio Campitelli [cre, aut]
Maintainer: Elio Campitelli <elio.campitelli@cima.fcen.uba.ar>
Diff between metR versions 0.14.0 dated 2023-03-23 and 0.14.1 dated 2023-10-30
metR-0.14.0/metR/R/DivideTimeseries.R |only metR-0.14.0/metR/man/DivideTimeseries.Rd |only metR-0.14.1/metR/DESCRIPTION | 10 metR-0.14.1/metR/MD5 | 82 ++--- metR-0.14.1/metR/NAMESPACE | 1 metR-0.14.1/metR/NEWS.md | 15 metR-0.14.1/metR/R/ConvertLongitude.R | 2 metR-0.14.1/metR/R/Derivate.R | 16 - metR-0.14.1/metR/R/FitLm.R | 18 - metR-0.14.1/metR/R/GetTopography.R | 4 metR-0.14.1/metR/README.md | 12 metR-0.14.1/metR/build/partial.rdb |binary metR-0.14.1/metR/build/vignette.rds |binary metR-0.14.1/metR/inst/doc/Visualization-tools.R | 5 metR-0.14.1/metR/inst/doc/Visualization-tools.Rmd | 1 metR-0.14.1/metR/inst/doc/Visualization-tools.html | 304 +++++++++---------- metR-0.14.1/metR/inst/doc/Working-with-data.R | 1 metR-0.14.1/metR/inst/doc/Working-with-data.Rmd | 3 metR-0.14.1/metR/inst/doc/Working-with-data.html | 321 ++++++++++----------- metR-0.14.1/metR/man/ConvertLongitude.Rd | 2 metR-0.14.1/metR/man/Derivate.Rd | 1 metR-0.14.1/metR/man/FitLm.Rd | 6 metR-0.14.1/metR/man/MakeBreaks.Rd | 1 metR-0.14.1/metR/man/WrapCircular.Rd | 1 metR-0.14.1/metR/man/geom_arrow.Rd | 1 metR-0.14.1/metR/man/geom_contour2.Rd | 2 metR-0.14.1/metR/man/geom_contour_fill.Rd | 1 metR-0.14.1/metR/man/geom_relief.Rd | 1 metR-0.14.1/metR/man/geom_streamline.Rd | 1 metR-0.14.1/metR/man/geom_text_contour.Rd | 3 metR-0.14.1/metR/man/guide_colourstrip.Rd | 1 metR-0.14.1/metR/man/map_labels.Rd | 1 metR-0.14.1/metR/man/metR.Rd | 2 metR-0.14.1/metR/man/reverselog_trans.Rd | 1 metR-0.14.1/metR/man/scale_divergent.Rd | 1 metR-0.14.1/metR/man/scale_longitude.Rd | 1 metR-0.14.1/metR/man/stat_na.Rd | 1 metR-0.14.1/metR/man/stat_subset.Rd | 1 metR-0.14.1/metR/tests/testthat.R | 3 metR-0.14.1/metR/tests/testthat/Rplots.pdf |binary metR-0.14.1/metR/tests/testthat/test-GetSMNData.R | 2 metR-0.14.1/metR/vignettes/Visualization-tools.Rmd | 1 metR-0.14.1/metR/vignettes/Working-with-data.Rmd | 3 43 files changed, 425 insertions(+), 408 deletions(-)
Title: Linking Geographic Information Systems, Remote Sensing and Other
Command Line Tools
Description: Functions to simplify the linking of open source GIS and remote sensing related command line interfaces.
Author: Chris Reudenbach [cre, aut],
Tim Appelhans [ctb]
Maintainer: Chris Reudenbach <reudenbach@uni-marburg.de>
Diff between link2GI versions 0.5-2 dated 2023-01-27 and 0.5-3 dated 2023-10-30
link2GI-0.5-2/link2GI/data |only link2GI-0.5-2/link2GI/man/link2GI.Rd |only link2GI-0.5-2/link2GI/man/rgb.Rd |only link2GI-0.5-3/link2GI/DESCRIPTION | 14 - link2GI-0.5-3/link2GI/MD5 | 57 +++---- link2GI-0.5-3/link2GI/NEWS | 5 link2GI-0.5-3/link2GI/NEWS.md | 16 +- link2GI-0.5-3/link2GI/R/link2GI-package.R | 10 - link2GI-0.5-3/link2GI/R/parseOTB.R | 24 +-- link2GI-0.5-3/link2GI/README.md | 22 +- link2GI-0.5-3/link2GI/build/vignette.rds |binary link2GI-0.5-3/link2GI/inst/doc/link2GI1.R | 2 link2GI-0.5-3/link2GI/inst/doc/link2GI1.Rmd | 4 link2GI-0.5-3/link2GI/inst/doc/link2GI1.html | 192 +++++++++++++++++-------- link2GI-0.5-3/link2GI/inst/doc/link2GI2.R | 39 ++--- link2GI-0.5-3/link2GI/inst/doc/link2GI2.Rmd | 9 - link2GI-0.5-3/link2GI/inst/doc/link2GI2.html | 203 +++++++++++++++++---------- link2GI-0.5-3/link2GI/inst/doc/link2GI3.R | 14 - link2GI-0.5-3/link2GI/inst/doc/link2GI3.html | 180 ++++++++++++++++------- link2GI-0.5-3/link2GI/inst/doc/link2GI4.R | 13 - link2GI-0.5-3/link2GI/inst/doc/link2GI4.Rmd | 9 - link2GI-0.5-3/link2GI/inst/doc/link2GI4.html | 181 ++++++++++++++++-------- link2GI-0.5-3/link2GI/inst/doc/link2GI5.html | 110 +++++++------- link2GI-0.5-3/link2GI/inst/doc/link2GI6.R | 2 link2GI-0.5-3/link2GI/inst/doc/link2GI6.Rmd | 2 link2GI-0.5-3/link2GI/inst/doc/link2GI6.html | 196 +++++++++++++++++--------- link2GI-0.5-3/link2GI/man/runOTB.Rd | 8 - link2GI-0.5-3/link2GI/vignettes/link2GI1.Rmd | 4 link2GI-0.5-3/link2GI/vignettes/link2GI2.Rmd | 9 - link2GI-0.5-3/link2GI/vignettes/link2GI4.Rmd | 9 - link2GI-0.5-3/link2GI/vignettes/link2GI6.Rmd | 2 31 files changed, 824 insertions(+), 512 deletions(-)
Title: Mappable Vector Library for Handling Large Datasets
Description: Mappable vector library provides convenient way to access large datasets. Use all of your data at once, with few limits. Memory mapped data can be shared between multiple R processes. Access speed depends on storage medium, so solid state drive is recommended, preferably with PCI Express (or M.2 nvme) interface or a fast network file system. The data is memory mapped into R and then accessed using usual R list and array subscription operators. Convenience functions are provided for merging, grouping and indexing large vectors and data.frames. The layout of underlying MVL files is optimized for large datasets. The vectors are stored to guarantee alignment for vector intrinsics after memory map. The package is built on top of libMVL, which can be used as a standalone C library. libMVL has simple C API making it easy to interchange datasets with outside programs.
Author: Vladimir Dergachev [aut, cre]
Maintainer: Vladimir Dergachev <support@altumrete.com>
Diff between RMVL versions 0.0.4.8 dated 2023-10-29 and 0.0.4.9 dated 2023-10-30
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- R/RMVL.R | 10 +++++++--- src/RlibMVL.c | 19 ++++++++++++------- tests/test_indexed_copy.R |only tests/test_indexed_copy.Rout.save |only 6 files changed, 28 insertions(+), 17 deletions(-)
Title: Manage Spatial Metadata for Known Locations
Description: Utility functions for discovering and managing metadata
associated with spatially unique "known locations". Applications include
all fields of environmental monitoring (e.g. air and water quality) where
data are collected at stationary sites.
Author: Jonathan Callahan [aut, cre],
Eli Grosman [ctb],
Oliver Fogelin [ctb]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaLocationUtils versions 0.3.11 dated 2023-09-06 and 0.4.1 dated 2023-10-30
MazamaLocationUtils-0.3.11/MazamaLocationUtils/R/mazama_initialize.R |only MazamaLocationUtils-0.3.11/MazamaLocationUtils/man/getAPIKey.Rd |only MazamaLocationUtils-0.3.11/MazamaLocationUtils/man/mazama_initialize.Rd |only MazamaLocationUtils-0.3.11/MazamaLocationUtils/man/setAPIKey.Rd |only MazamaLocationUtils-0.3.11/MazamaLocationUtils/man/showAPIKeys.Rd |only MazamaLocationUtils-0.4.1/MazamaLocationUtils/DESCRIPTION | 12 MazamaLocationUtils-0.4.1/MazamaLocationUtils/MD5 | 151 ++++----- MazamaLocationUtils-0.4.1/MazamaLocationUtils/NAMESPACE | 6 MazamaLocationUtils-0.4.1/MazamaLocationUtils/NEWS.md | 14 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/MazamaLocationUtils.R | 30 + MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/clusterByDistance.R |only MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/data.R | 64 ++-- MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/initializeMazamaSpatialUtils.R |only MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/location_createID.R | 35 +- MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/location_getOpenCageInfo.R | 6 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/location_getSingleAddress_Photon.R | 8 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/location_getSingleAddress_TexasAM.R | 8 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/location_initialize.R | 17 - MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_addClustering.R |only MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_addColumn.R | 4 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_addCoreMetadata.R | 18 - MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_addLocation.R | 20 + MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_addOpenCageInfo.R | 10 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_addSingleLocation.R | 7 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_findAdjacentLocations.R | 4 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_getDistanceFromTarget.R | 2 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_getLocationID.R | 6 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_getNearestDistance.R | 4 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_initialize.R | 4 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_initializeExisting.R | 10 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_leaflet.R | 12 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_leafletAdd.R | 2 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_removeColumn.R | 6 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/table_updateColumn.R | 8 MazamaLocationUtils-0.4.1/MazamaLocationUtils/R/utils-APIKey.R | 36 +- MazamaLocationUtils-0.4.1/MazamaLocationUtils/README.md | 23 - MazamaLocationUtils-0.4.1/MazamaLocationUtils/build/vignette.rds |binary MazamaLocationUtils-0.4.1/MazamaLocationUtils/data/id_monitors_500.rda |binary MazamaLocationUtils-0.4.1/MazamaLocationUtils/data/or_monitors_500.rda |binary MazamaLocationUtils-0.4.1/MazamaLocationUtils/data/wa_airfire_meta.rda |binary MazamaLocationUtils-0.4.1/MazamaLocationUtils/data/wa_monitors_500.rda |binary MazamaLocationUtils-0.4.1/MazamaLocationUtils/inst/doc/Developer_Style_Guide.Rmd |only MazamaLocationUtils-0.4.1/MazamaLocationUtils/inst/doc/Developer_Style_Guide.html |only MazamaLocationUtils-0.4.1/MazamaLocationUtils/inst/doc/MazamaLocationUtils.R | 34 +- MazamaLocationUtils-0.4.1/MazamaLocationUtils/inst/doc/MazamaLocationUtils.Rmd | 64 ++-- MazamaLocationUtils-0.4.1/MazamaLocationUtils/inst/doc/MazamaLocationUtils.html | 158 +++++----- MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/APIKeys.Rd |only MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/MazamaLocationUtils.Rd | 10 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/clusterByDistance.Rd |only MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/coreMetadataNames.Rd | 18 + MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/id_monitors_500.Rd | 18 - MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/initializeMazamaSpatialUtils.Rd |only MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/location_createID.Rd | 25 + MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/location_getOpenCageInfo.Rd | 6 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/location_getSingleAddress_Photon.Rd | 4 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/location_getSingleAddress_TexasAM.Rd | 2 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/location_initialize.Rd | 7 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/or_monitors_500.Rd | 10 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_addClustering.Rd |only MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_addColumn.Rd | 4 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_addCoreMetadata.Rd | 6 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_addLocation.Rd | 2 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_addOpenCageInfo.Rd | 2 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_addSingleLocation.Rd | 6 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_findAdjacentLocations.Rd | 4 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_getDistanceFromTarget.Rd | 2 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_getLocationID.Rd | 5 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_getNearestDistance.Rd | 4 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_initialize.Rd | 2 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_initializeExisting.Rd | 5 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_leaflet.Rd | 10 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_removeColumn.Rd | 6 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/table_updateColumn.Rd | 8 MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/wa_airfire_meta.Rd | 20 - MazamaLocationUtils-0.4.1/MazamaLocationUtils/man/wa_monitors_500.Rd | 12 MazamaLocationUtils-0.4.1/MazamaLocationUtils/tests/testthat/test-table_addLocation.R | 2 MazamaLocationUtils-0.4.1/MazamaLocationUtils/tests/testthat/test-table_findAdjacentDistances.R | 4 MazamaLocationUtils-0.4.1/MazamaLocationUtils/tests/testthat/test-table_initialize.R | 2 MazamaLocationUtils-0.4.1/MazamaLocationUtils/tests/testthat/test-table_initializeExisting.R | 19 - MazamaLocationUtils-0.4.1/MazamaLocationUtils/tests/testthat/test-table_removeRecord.R | 2 MazamaLocationUtils-0.4.1/MazamaLocationUtils/tests/testthat/test-table_updateColumn.R | 44 +- MazamaLocationUtils-0.4.1/MazamaLocationUtils/tests/testthat/test-table_updateSingleRecord.R | 2 MazamaLocationUtils-0.4.1/MazamaLocationUtils/vignettes/Developer_Style_Guide.Rmd |only MazamaLocationUtils-0.4.1/MazamaLocationUtils/vignettes/MazamaLocationUtils.Rmd | 64 ++-- 84 files changed, 665 insertions(+), 455 deletions(-)
More information about MazamaLocationUtils at CRAN
Permanent link
Title: A Collection of Robust Statistical Methods
Description: A collection of robust statistical methods based on Wilcox' WRS functions. It implements robust t-tests (independent and dependent samples), robust ANOVA (including between-within subject designs), quantile ANOVA, robust correlation, robust mediation, and nonparametric ANCOVA models based on robust location measures.
Author: Patrick Mair [cre, aut],
Rand Wilcox [aut],
Indrajeet Patil [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between WRS2 versions 1.1-4 dated 2022-06-10 and 1.1-5 dated 2023-10-30
DESCRIPTION | 12 ++++++------ MD5 | 17 +++++++++-------- NAMESPACE | 1 - R/rmultinomial.R |only build/vignette.rds |binary inst/CITATION | 29 ++++++++--------------------- inst/NEWS.Rd | 6 ++++++ inst/doc/WRS2.pdf |binary man/diet.Rd | 4 +--- man/t1way.Rd | 2 +- 10 files changed, 31 insertions(+), 40 deletions(-)
Title: Estimate the Confidence Intervals for Predictive Values
Description: Computes confidence intervals for the positive predictive value (PPV) and negative predictive value (NPV) based on varied scenarios. In prospective studies where the proportion of diseased subjects is an unbiased estimate of the disease prevalence, this package provides several methods for calculating the confidence intervals for PPV and NPV including Clopper-Pearson, Wald, Wilson, Agresti-Coull, and Beta. In situations where the proportion of diseased subjects does not correspond to the disease prevalence (e.g. case-control studies), this package provides two types of solutions: 1) three methods for estimating confidence intervals for PPV and NPV via ratio of two binomial proportions including Gart & Nam (1988), Walter (1975), and MOVER-J (Laud, 2017); 2) three direct methods that compute the confidence intervals including Pepe (2003), Zhou (2007), and Delta. See the Details and References sections in the corresponding functions.
Author: Dadong Zhang <dzhang4@illumina.com>,
Jingye Wang <jwang16@illumina.com>,
Johan Surtihadi <jsurtihadi@illumina.com>
Maintainer: Dadong Zhang <dzhang4@illumina.com>
Diff between CIfinder versions 1.0.1 dated 2023-08-16 and 1.0.2 dated 2023-10-30
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/ppv_npv_ci.R | 24 +++++++++++------------- README.md | 15 +++++++-------- build/partial.rdb |binary inst/doc/CIfinder.Rmd | 2 +- inst/doc/CIfinder.html | 17 ++++++++--------- man/ppv_npv_ci.Rd | 7 +++++-- tests/testthat/test-ppv_npv_ci.R | 4 ---- vignettes/CIfinder.Rmd | 2 +- 10 files changed, 45 insertions(+), 50 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-30 0.3.2
2022-12-05 0.3.1
2022-09-23 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-17 2019-12.16
2016-08-16 2016-8.16
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-22 1.1.0
2021-06-23 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-11 2022-4.30
2014-12-05 2013-2.21
2013-02-27 2013-02.20
2012-08-08 2012-8.08
2011-10-18 2011-2.101
2011-02-23 2011-2.10
2010-11-15 0.82
2010-07-24 0.8
2010-04-04 0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-10 1.0.3
2019-01-08 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-06 1.3.30
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-18 2018-4.17.1
2018-04-17 2018-4.17
2017-07-18 2017-7.18
2014-12-06 2013-11.12
2013-11-14 2013-11.11
2013-07-20 2013-7.20
2013-01-26 2013-1.25
2011-10-18 2011-5.091
2011-05-16 2011-5.09
2011-03-01 2011-2.25
2011-02-23 2011-2.11
2010-11-15 0.96
2010-07-24 0.95
2010-05-28 0.92
2010-04-04 0.91
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-31 1.1
2020-01-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-16 1.1.0
2021-01-18 1.0.3
Title: Hyperbolic Geometry
Description: Hyperbolic geometry in the Minkowski model and the Poincaré
model. The methods are based on the gyrovector space theory developed
by A. A. Ungar that can be found in the book 'Analytic Hyperbolic
Geometry: Mathematical Foundations And Applications'
<doi:10.1142/5914>. The package provides functions to plot
three-dimensional hyperbolic polyhedra and to plot hyperbolic tilings
of the Poincaré disk.
Author: Stephane Laurent
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between gyro versions 1.3.0 dated 2023-08-07 and 1.4.0 dated 2023-10-30
DESCRIPTION | 11 ++++++----- MD5 | 13 +++++++------ NAMESPACE | 4 ++-- NEWS.md | 6 ++++++ R/colors.R |only R/hdelaunay.R | 19 +++++++++++-------- inst/doc/getstarted.R | 2 +- man/plotHdelaunay.Rd | 17 ++++++++++------- 8 files changed, 43 insertions(+), 29 deletions(-)
Title: Ecological Trajectory Analysis
Description: Assists ecologists in the analysis of temporal changes of
ecosystems, defined as trajectories on a chosen multivariate space, by providing a set of
trajectory metrics and visual representations [De Caceres et al. (2019) <doi:10.1002/ecm.1350>;
and Sturbois et al. (2021) <doi:10.1016/j.ecolmodel.2020.109400>]. Includes functions
to estimate metrics for individual trajectories (length, directionality, angles, ...) as well as
metrics to relate pairs of trajectories (dissimilarity and convergence). Functions are also
provided to estimate the ecological quality of ecosystem with respect to reference conditions
[Sturbois et al. (2023) ].
Author: Miquel De Caceres [aut, cre] ,
Anthony Sturbois [aut]
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>
Diff between ecotraj versions 0.0.3 dated 2022-04-28 and 0.1.1 dated 2023-10-30
ecotraj-0.0.3/ecotraj/build/vignette.rds |only ecotraj-0.0.3/ecotraj/inst/doc |only ecotraj-0.0.3/ecotraj/vignettes |only ecotraj-0.1.1/ecotraj/DESCRIPTION | 30 ++++++---- ecotraj-0.1.1/ecotraj/MD5 | 55 +++++++++---------- ecotraj-0.1.1/ecotraj/NAMESPACE | 43 ++++++++++++--- ecotraj-0.1.1/ecotraj/R/RcppExports.R | 14 ++-- ecotraj-0.1.1/ecotraj/R/documentationEQA.R |only ecotraj-0.1.1/ecotraj/R/ecotraj-package.R |only ecotraj-0.1.1/ecotraj/R/referenceEnvelopes.R |only ecotraj-0.1.1/ecotraj/R/trajectoryMetrics.R | 12 +++- ecotraj-0.1.1/ecotraj/R/trajectoryPlots.R | 4 + ecotraj-0.1.1/ecotraj/R/trajectoryUtils.R | 5 + ecotraj-0.1.1/ecotraj/build/partial.rdb |only ecotraj-0.1.1/ecotraj/data/glenan.rda |only ecotraj-0.1.1/ecotraj/data/glomel.rda |only ecotraj-0.1.1/ecotraj/inst/CITATION | 66 ++++++++++++++--------- ecotraj-0.1.1/ecotraj/man/avoca.Rd | 14 ++-- ecotraj-0.1.1/ecotraj/man/ecotraj-package.Rd |only ecotraj-0.1.1/ecotraj/man/furseals.Rd | 22 +++---- ecotraj-0.1.1/ecotraj/man/glenan.Rd |only ecotraj-0.1.1/ecotraj/man/glomel.Rd |only ecotraj-0.1.1/ecotraj/man/heatmapdata.Rd | 24 ++++---- ecotraj-0.1.1/ecotraj/man/isoscape.Rd | 16 ++--- ecotraj-0.1.1/ecotraj/man/pike.Rd | 30 +++++----- ecotraj-0.1.1/ecotraj/man/referenceEnvelopes.Rd |only ecotraj-0.1.1/ecotraj/man/trajectorymetrics.Rd | 68 ++++++++++++------------ ecotraj-0.1.1/ecotraj/man/trajectoryplots.Rd | 9 +-- ecotraj-0.1.1/ecotraj/man/trajectoryutils.Rd | 4 - ecotraj-0.1.1/ecotraj/tests |only 30 files changed, 238 insertions(+), 178 deletions(-)
Title: Spatio-Temporal Generalised Linear Mixed Models for Areal Unit
Data
Description: Implements a class of univariate and multivariate spatio-temporal generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC) simulation. The response variable can be binomial, Gaussian, or Poisson, but for some models only the binomial and Poisson data likelihoods are available. The spatio-temporal autocorrelation is modelled by random effects, which are assigned conditional autoregressive (CAR) style prior distributions. A number of different random effects structures are available, including models similar to Rushworth et al. (2014) <doi:10.1016/j.sste.2014.05.001>. Full details are given in the vignette accompanying this package. The creation and development of this package was supported by the Engineering and Physical Sciences Research Council (EPSRC) grants EP/J017442/1 and EP/T004878/1 and the Medical Research Council (MRC) grant MR/L022184/1.
Author: Duncan Lee, Alastair Rushworth, Gary Napier and William Pettersson
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>
Diff between CARBayesST versions 3.3.1 dated 2023-01-17 and 4.0 dated 2023-10-30
DESCRIPTION | 12 MD5 | 114 ++-- NAMESPACE | 1 R/MVST.CARar.R | 14 R/ST.CARanova.R | 8 R/ST.CARar.R | 14 R/ST.CARlinear.R | 8 R/ST.CARlocalised.R | 6 R/ST.CARsepspatial.R | 6 R/binomial.CARanova.R | 890 +++++++++++++------------------------- R/binomial.CARanovaMCMC.R |only R/binomial.CARar1.R | 621 +++++++++++---------------- R/binomial.CARar1MCMC.R |only R/binomial.CARar2.R | 685 ++++++++++++------------------ R/binomial.CARar2MCMC.R |only R/binomial.CARlinear.R | 752 ++++++++++++-------------------- R/binomial.CARlinearMCMC.R |only R/binomial.CARlocalised.R | 681 +++++++++++------------------ R/binomial.CARlocalisedMCMC.R |only R/binomial.CARsepspatial.R | 801 ++++++++++++++--------------------- R/binomial.CARsepspatialMCMC.R |only R/binomial.MVCARar1.R | 886 ++++++++++++++++---------------------- R/binomial.MVCARar1MCMC.R |only R/binomial.MVCARar2.R | 922 +++++++++++++++++----------------------- R/binomial.MVCARar2MCMC.R |only R/gaussian.CARanova.R | 751 ++++++++++++-------------------- R/gaussian.CARanovaMCMC.R |only R/gaussian.CARar1.R | 641 ++++++++++++---------------- R/gaussian.CARar1MCMC.R |only R/gaussian.CARar2.R | 684 ++++++++++++----------------- R/gaussian.CARar2MCMC.R |only R/gaussian.CARlinear.R | 741 +++++++++++++------------------- R/gaussian.CARlinearMCMC.R |only R/gaussian.MVCARar1.R | 908 +++++++++++++++++---------------------- R/gaussian.MVCARar1MCMC.R |only R/gaussian.MVCARar2.R | 936 ++++++++++++++++++----------------------- R/gaussian.MVCARar2MCMC.R |only R/poisson.CARanova.R | 851 +++++++++++++------------------------ R/poisson.CARanovaMCMC.R |only R/poisson.CARar1.R | 598 +++++++++++--------------- R/poisson.CARar1MCMC.R |only R/poisson.CARar2.R | 674 ++++++++++++----------------- R/poisson.CARar2MCMC.R |only R/poisson.CARlinear.R | 730 ++++++++++++------------------- R/poisson.CARlinearMCMC.R |only R/poisson.CARlocalised.R | 667 +++++++++++------------------ R/poisson.CARlocalisedMCMC.R |only R/poisson.CARsepspatial.R | 759 +++++++++++++-------------------- R/poisson.CARsepspatialMCMC.R |only R/poisson.MVCARar1.R | 876 ++++++++++++++++---------------------- R/poisson.MVCARar1MCMC.R |only R/poisson.MVCARar2.R | 908 +++++++++++++++++---------------------- R/poisson.MVCARar2MCMC.R |only R/print.CARBayesST.R | 68 ++ build/vignette.rds |binary inst/doc/CARBayesST.R | 30 - inst/doc/CARBayesST.Rnw | 319 ++++++------- inst/doc/CARBayesST.pdf |binary man/CARBayesST-package.Rd | 4 man/MVST.CARar.Rd | 13 man/ST.CARanova.Rd | 12 man/ST.CARar.Rd | 12 man/ST.CARlinear.Rd | 14 man/ST.CARlocalised.Rd | 12 man/ST.CARsepspatial.Rd | 12 src/RcppExports.cpp | 5 vignettes/CARBayesST.Rnw | 319 ++++++------- vignettes/JSS2728.bib | 38 + vignettes/pollution_mcmc.png |binary 69 files changed, 7552 insertions(+), 10451 deletions(-)
Title: VPC Percentiles and Prediction Intervals
Description: Perform a Visual Predictive Check (VPC), while accounting for
stratification, censoring, and prediction correction. Using piping from
'magrittr', the intuitive syntax gives users a flexible and powerful method
to generate VPCs using both traditional binning and a new binless approach
Jamsen et al. (2018) <doi:10.1002/psp4.12319> with Additive Quantile
Regression (AQR) and Locally Estimated Scatterplot Smoothing (LOESS)
prediction correction.
Author: Olivier Barriere [aut],
Benjamin Rich [aut],
James Craig [aut, cre],
Samer Mouksassi [aut],
Bill Denney [ctb] ,
Kris Jamsen [ctb],
Certara USA, Inc. [cph, fnd]
Maintainer: James Craig <james.craig@certara.com>
Diff between tidyvpc versions 1.4.0 dated 2022-10-27 and 1.5.0 dated 2023-10-30
DESCRIPTION | 19 MD5 | 77 NEWS.md | 10 R/binless.R |only R/plot.R | 749 ++++-- R/vpcstats.R | 1240 +--------- R/vpcstats_fun.R |only build/vignette.rds |binary inst/doc/tidyvpc_cat.R | 3 inst/doc/tidyvpc_cat.Rmd | 4 inst/doc/tidyvpc_cat.html | 14 inst/doc/tidyvpc_cont.R | 48 inst/doc/tidyvpc_cont.Rmd | 73 inst/doc/tidyvpc_cont.html | 155 - inst/doc/tidyvpc_nlmixr2.R |only inst/doc/tidyvpc_nlmixr2.Rmd |only inst/doc/tidyvpc_nlmixr2.html |only inst/extdata/Binless/predcor_stats.csv |only inst/extdata/Binless/predcor_stats_l.csv |only inst/extdata/Binless/stats_l.csv | 3302 +++++++++++++-------------- inst/extdata/Binless/strat_stats_l.csv | 3302 +++++++++++++-------------- inst/extdata/Binning/predcor_strat_stats.csv |only man/bininfo.Rd | 4 man/binless.Rd | 34 man/binning.Rd | 12 man/censoring.Rd | 7 man/check_order.Rd | 2 man/observed.Rd | 2 man/plot.tidyvpcobj.Rd | 21 man/predcorrect.Rd | 14 man/simulated.Rd | 12 man/stratify.Rd | 2 man/vpcstats.Rd | 2 tests/testthat.R | 4 tests/testthat/_snaps |only tests/testthat/test-binless.R | 171 - tests/testthat/test-binning.R | 138 - tests/testthat/test-plot.R |only tests/testthat/test-vpcstats.R |only vignettes/tidyvpc_cat.Rmd | 4 vignettes/tidyvpc_cont.Rmd | 73 vignettes/tidyvpc_nlmixr2.Rmd |only 42 files changed, 4640 insertions(+), 4858 deletions(-)
Title: Automated Estimation of Sigmoidal and Piecewise Linear Mixed
Models
Description: Estimation of relatively complex nonlinear mixed-effects models, including the Sigmoidal Mixed Model and the Piecewise Linear Mixed Model with abrupt or smooth transition, through a single intuitive line of code and with automated generation of starting values.
Author: Maude Wagner [aut, cre] ,
Ana W. Capuano [aut],
Emmanuelle Comets [ctb]
Maintainer: Maude Wagner <maude_wagner@rush.edu>
Diff between nlive versions 0.1.0 dated 2022-09-13 and 0.2.0 dated 2023-10-30
nlive-0.1.0/nlive/R/dataset.R |only nlive-0.1.0/nlive/data/dataset.rda |only nlive-0.1.0/nlive/man/dataset.Rd |only nlive-0.2.0/nlive/DESCRIPTION | 13 nlive-0.2.0/nlive/MD5 | 24 nlive-0.2.0/nlive/NAMESPACE | 74 - nlive-0.2.0/nlive/R/dataCog.R |only nlive-0.2.0/nlive/R/globals.R | 57 nlive-0.2.0/nlive/R/nlive.R | 2299 ++++++++++++++++----------------- nlive-0.2.0/nlive/R/nlive.inspect.R |only nlive-0.2.0/nlive/R/nlive.pmma.R |only nlive-0.2.0/nlive/R/nlive.pmms.R |only nlive-0.2.0/nlive/R/nlive.smm.R |only nlive-0.2.0/nlive/data/dataCog.rda |only nlive-0.2.0/nlive/man/dataCog.Rd |only nlive-0.2.0/nlive/man/nlive.Rd | 259 +-- nlive-0.2.0/nlive/man/nlive.inspect.Rd |only nlive-0.2.0/nlive/man/nlive.pmma.Rd |only nlive-0.2.0/nlive/man/nlive.pmms.Rd |only nlive-0.2.0/nlive/man/nlive.smm.Rd |only 20 files changed, 1386 insertions(+), 1340 deletions(-)
Title: Dissimilarity-Based Functions for Ecological Analysis
Description: Dissimilarity-based analysis functions including ordination and Mantel test functions, intended for use with spatial and community ecological data. The original package description is in Goslee and Urban (2007) <doi:10.18637/jss.v022.i07>, with further statistical detail in Goslee (2010) <doi:10.1007/s11258-009-9641-0>.
Author: Sarah Goslee [aut, cre],
Dean Urban [aut]
Maintainer: Sarah Goslee <Sarah.Goslee@usda.gov>
Diff between ecodist versions 2.0.9 dated 2022-05-05 and 2.1.3 dated 2023-10-30
DESCRIPTION | 12 +++---- MD5 | 70 ++++++++++++++++++++++++-------------------- NAMESPACE | 7 +++- R/dim.dist.R |only R/distance.R | 55 ++++++++++++++++++---------------- R/mgram.R | 31 +++++++++++-------- R/mgroup.R | 6 +++ R/min.nmds.R | 1 R/nmds.min.R | 1 R/pathdist.R |only R/pco.R | 11 +++++- R/plot.mgram.R | 6 +++ R/plot.vf.R | 9 ++++- R/pmgram.R | 61 ++++++++++++++++---------------------- R/relrange.R |only R/rotate2d.R |only R/vf.R | 6 +-- R/xdistance.R | 4 ++ R/xmgram.R | 29 +++++++++++------- README.md | 26 ++++++++++++++++ build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 8 +---- inst/doc/dissimilarity.Rmd | 14 ++++---- inst/doc/dissimilarity.html | 35 +++++++++++----------- man/dim.dist.Rd |only man/mgram.Rd | 7 +--- man/mgroup.Rd | 8 +++-- man/nmds.Rd | 6 +-- man/pathdist.Rd |only man/pco.Rd | 2 - man/plot.mgram.Rd | 2 - man/plot.vf.Rd | 3 + man/pmgram.Rd | 15 ++++++--- man/relrange.Rd |only man/rotate2d.Rd |only man/vf.Rd | 11 ++++++ man/xdistance.Rd | 3 + man/xmgram.Rd | 3 + vignettes/dissimilarity.Rmd | 14 ++++---- 40 files changed, 281 insertions(+), 185 deletions(-)
Title: Model Audit - Verification, Validation, and Error Analysis
Description: Provides an easy to use unified interface for creating validation plots for any model.
The 'auditor' helps to avoid repetitive work consisting of writing code needed to create residual plots.
This visualizations allow to asses and compare the goodness of fit, performance, and similarity of models.
Author: Alicja Gosiewska [aut, cre] ,
Przemyslaw Biecek [aut, ths] ,
Hubert Baniecki [aut] ,
Tomasz Mikolajczyk [aut],
Michal Burdukiewicz [ctb],
Szymon Maksymiuk [ctb]
Maintainer: Alicja Gosiewska <alicjagosiewska@gmail.com>
Diff between auditor versions 1.3.3 dated 2021-07-26 and 1.3.5 dated 2023-10-30
DESCRIPTION | 8 MD5 | 374 +++++------ NAMESPACE | 324 +++++----- NEWS.md | 120 ++- R/audit.R | 124 +-- R/auditorData.R | 32 - R/check_residuals.R | 344 +++++----- R/model_cooksdistance.R | 100 +-- R/model_evaluation.R | 204 +++--- R/model_halfnormal.R | 248 +++---- R/model_performance.R | 184 ++--- R/model_residual.R | 120 +-- R/plot.R | 332 +++++----- R/plotD3.R | 208 +++--- R/plotD3_acf.R | 204 +++--- R/plotD3_autocorrelation.R | 324 +++++----- R/plotD3_cooksdistance.R | 234 +++---- R/plotD3_halfnormal.R | 182 ++--- R/plotD3_lift.R | 258 ++++---- R/plotD3_prediction.R | 352 +++++------ R/plotD3_rec.R | 180 ++--- R/plotD3_residual.R | 388 ++++++------ R/plotD3_roc.R | 220 +++---- R/plotD3_rroc.R | 188 +++--- R/plotD3_scalelocation.R | 342 +++++----- R/plot_acf.R | 214 +++--- R/plot_autocorrelation.R | 230 +++---- R/plot_cooksdistance.R | 166 ++--- R/plot_correlation.R | 178 ++--- R/plot_halfnormal.R | 158 ++--- R/plot_lift.R | 268 ++++---- R/plot_pca.R | 164 ++--- R/plot_prc.R | 170 ++--- R/plot_prediction.R | 216 +++--- R/plot_radar.R | 162 ++--- R/plot_rec.R | 168 ++--- R/plot_residual.R | 246 +++---- R/plot_residual_boxplot.R | 148 ++-- R/plot_residual_density.R | 250 +++---- R/plot_roc.R | 192 +++--- R/plot_rroc.R | 184 ++--- R/plot_scalelocation.R | 214 +++--- R/plot_tsecdf.R | 184 ++--- R/print.R | 354 +++++------ R/score.R | 150 ++-- R/score_F1.R | 202 +++--- R/score_acc.R | 206 +++--- R/score_auc.R | 220 +++---- R/score_auprc.R | 252 ++++---- R/score_cooksdistance.R | 162 ++--- R/score_dw.R | 136 ++-- R/score_gini.R | 206 +++--- R/score_halfnormal.R | 134 ++-- R/score_mae.R | 112 +-- R/score_mse.R | 108 +-- R/score_peak.R | 120 +-- R/score_precision.R | 202 +++--- R/score_r2.R | 122 +-- R/score_rec.R | 142 ++-- R/score_recall.R | 212 +++--- R/score_rmse.R | 116 +-- R/score_rroc.R | 148 ++-- R/score_runs.R | 150 ++-- R/score_specificity.R | 214 +++--- R/support_function_plot.R | 940 +++++++++++++++--------------- R/support_function_score.R | 30 R/theme_drwhy.R | 104 +-- build/vignette.rds |binary inst/CITATION | 22 inst/WORDLIST | 136 ++-- inst/d3js/colorsDrWhy.js | 344 +++++----- inst/d3js/d3-tip.js | 770 ++++++++++++------------ inst/d3js/hackHead.js | 46 - inst/d3js/plotACFMany.js | 286 ++++----- inst/d3js/plotAutocorrelationMany.js | 422 ++++++------- inst/d3js/plotAutocorrelationSingle.js | 546 ++++++++--------- inst/d3js/plotCooksDistanceMany.js | 336 +++++----- inst/d3js/plotCooksDistanceSingle.js | 480 +++++++-------- inst/d3js/plotHalfNormalMany.js | 364 +++++------ inst/d3js/plotLIFT.js | 634 ++++++++++---------- inst/d3js/plotREC.js | 544 ++++++++--------- inst/d3js/plotROC.js | 650 ++++++++++---------- inst/d3js/plotRROC.js | 640 ++++++++++---------- inst/d3js/plotScatterMany.js | 474 +++++++-------- inst/d3js/plotScatterSingle.js | 606 +++++++++---------- inst/d3js/themeDrWhy.css | 150 ++-- inst/doc/model_evaluation_audit.R | 66 +- inst/doc/model_evaluation_audit.Rmd | 188 +++--- inst/doc/model_evaluation_audit.html | 507 ++++++---------- inst/doc/model_fit_audit.R | 66 +- inst/doc/model_fit_audit.Rmd | 216 +++--- inst/doc/model_fit_audit.html | 522 ++++++---------- inst/doc/model_performance_audit.R | 96 +-- inst/doc/model_performance_audit.Rmd | 200 +++--- inst/doc/model_performance_audit.html | 592 ++++++++---------- inst/doc/model_residuals_audit.R | 250 +++---- inst/doc/model_residuals_audit.Rmd | 592 +++++++++--------- inst/doc/model_residuals_audit.html | 892 +++++++++++----------------- inst/doc/observation_influence_audit.R | 58 - inst/doc/observation_influence_audit.Rmd | 176 ++--- inst/doc/observation_influence_audit.html | 496 ++++++--------- man/audit.Rd | 120 +-- man/auditorData.Rd | 42 - man/check_residuals.Rd | 68 +- man/check_residuals_autocorrelation.Rd | 50 - man/check_residuals_outliers.Rd | 50 - man/check_residuals_trend.Rd | 58 - man/model_cooksdistance.Rd | 84 +- man/model_evaluation.Rd | 86 +- man/model_halfnormal.Rd | 88 +- man/model_performance.Rd | 146 ++-- man/model_residual.Rd | 92 +- man/plot.Rd | 168 ++--- man/plotD3.Rd | 138 ++-- man/plotD3_acf.Rd | 108 +-- man/plotD3_autocorrelation.Rd | 154 ++-- man/plotD3_cooksdistance.Rd | 152 ++-- man/plotD3_halfnormal.Rd | 104 +-- man/plotD3_lift.Rd | 116 +-- man/plotD3_prediction.Rd | 184 ++--- man/plotD3_rec.Rd | 114 +-- man/plotD3_residual.Rd | 186 ++--- man/plotD3_roc.Rd | 114 +-- man/plotD3_rroc.Rd | 128 ++-- man/plotD3_scalelocation.Rd | 158 ++--- man/plot_acf.Rd | 110 +-- man/plot_autocorrelation.Rd | 92 +- man/plot_cooksdistance.Rd | 108 +-- man/plot_correlation.Rd | 98 +-- man/plot_halfnormal.Rd | 102 +-- man/plot_lift.Rd | 114 +-- man/plot_pca.Rd | 94 +-- man/plot_prediction.Rd | 114 +-- man/plot_radar.Rd | 92 +- man/plot_rec.Rd | 118 +-- man/plot_residual.Rd | 138 ++-- man/plot_residual_boxplot.Rd | 98 +-- man/plot_residual_density.Rd | 114 +-- man/plot_roc.Rd | 188 +++--- man/plot_rroc.Rd | 132 ++-- man/plot_scalelocation.Rd | 110 +-- man/plot_tsecdf.Rd | 130 ++-- man/print.auditor_model_cooksdistance.Rd | 58 - man/print.auditor_model_evaluation.Rd | 62 - man/print.auditor_model_halfnormal.Rd | 62 - man/print.auditor_model_performance.Rd | 60 - man/print.auditor_model_residual.Rd | 60 - man/print.auditor_score.Rd | 58 - man/score.Rd | 100 +-- man/score_acc.Rd | 86 +- man/score_auc.Rd | 90 +- man/score_auprc.Rd | 82 +- man/score_cooksdistance.Rd | 108 +-- man/score_dw.Rd | 88 +- man/score_f1.Rd | 84 +- man/score_gini.Rd | 90 +- man/score_halfnormal.Rd | 86 +- man/score_mae.Rd | 90 +- man/score_mse.Rd | 86 +- man/score_one_minus_acc.Rd | 88 +- man/score_one_minus_auc.Rd | 78 +- man/score_one_minus_auprc.Rd | 82 +- man/score_one_minus_f1.Rd | 86 +- man/score_one_minus_gini.Rd | 84 +- man/score_one_minus_precision.Rd | 88 +- man/score_one_minus_recall.Rd | 88 +- man/score_one_minus_specificity.Rd | 88 +- man/score_peak.Rd | 88 +- man/score_precision.Rd | 86 +- man/score_r2.Rd | 86 +- man/score_rec.Rd | 100 +-- man/score_recall.Rd | 88 +- man/score_rmse.Rd | 90 +- man/score_rroc.Rd | 96 +-- man/score_runs.Rd | 90 +- man/score_specificity.Rd | 86 +- tests/testthat.R | 8 tests/testthat/objects_for_tests.R | 136 ++-- tests/testthat/test_checks.R | 14 tests/testthat/test_errors.R | 66 +- tests/testthat/test_plotD3.R | 176 ++--- tests/testthat/test_plotsR.R | 292 ++++----- tests/testthat/test_scores.R | 154 ++-- vignettes/model_evaluation_audit.Rmd | 188 +++--- vignettes/model_fit_audit.Rmd | 216 +++--- vignettes/model_performance_audit.Rmd | 200 +++--- vignettes/model_residuals_audit.Rmd | 592 +++++++++--------- vignettes/observation_influence_audit.Rmd | 176 ++--- 188 files changed, 17733 insertions(+), 18202 deletions(-)
Title: Functions for Tidy Analysis and Generation of Random Data
Description: To make it easy to generate random numbers based upon the underlying stats
distribution functions. All data is returned in a tidy and structured
format making working with the data simple and straight forward. Given that the
data is returned in a tidy 'tibble' it lends itself to working with the rest of the
'tidyverse'.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between TidyDensity versions 1.2.5 dated 2023-05-19 and 1.2.6 dated 2023-10-30
TidyDensity-1.2.5/TidyDensity/R/util-distribution-comparison.R |only TidyDensity-1.2.6/TidyDensity/DESCRIPTION | 6 TidyDensity-1.2.6/TidyDensity/MD5 | 82 +++++----- TidyDensity-1.2.6/TidyDensity/NAMESPACE | 2 TidyDensity-1.2.6/TidyDensity/NEWS.md | 14 + TidyDensity-1.2.6/TidyDensity/R/est-param-burr.R | 4 TidyDensity-1.2.6/TidyDensity/R/stats-burr-tbl.R |only TidyDensity-1.2.6/TidyDensity/R/utils-convert-to-ts.R |only TidyDensity-1.2.6/TidyDensity/R/utils-distribution-comparison.R |only TidyDensity-1.2.6/TidyDensity/README.md | 24 +- TidyDensity-1.2.6/TidyDensity/inst/doc/getting-started.R | 2 TidyDensity-1.2.6/TidyDensity/inst/doc/getting-started.html | 80 ++++----- TidyDensity-1.2.6/TidyDensity/man/convert_to_ts.Rd |only TidyDensity-1.2.6/TidyDensity/man/figures/README-more_than_nine_simulations-1.png |binary TidyDensity-1.2.6/TidyDensity/man/figures/README-more_than_nine_simulations-2.png |binary TidyDensity-1.2.6/TidyDensity/man/figures/README-more_than_nine_simulations-3.png |binary TidyDensity-1.2.6/TidyDensity/man/figures/README-more_than_nine_simulations-4.png |binary TidyDensity-1.2.6/TidyDensity/man/figures/README-plot_density-1.png |binary TidyDensity-1.2.6/TidyDensity/man/figures/README-plot_density-2.png |binary TidyDensity-1.2.6/TidyDensity/man/figures/README-plot_density-3.png |binary TidyDensity-1.2.6/TidyDensity/man/figures/README-plot_density-4.png |binary TidyDensity-1.2.6/TidyDensity/man/tidy_burr.Rd | 3 TidyDensity-1.2.6/TidyDensity/man/tidy_distribution_comparison.Rd | 2 TidyDensity-1.2.6/TidyDensity/man/tidy_inverse_burr.Rd | 3 TidyDensity-1.2.6/TidyDensity/man/util_bernoulli_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_beta_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_binomial_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_burr_param_estimate.Rd | 3 TidyDensity-1.2.6/TidyDensity/man/util_burr_stats_tbl.Rd |only TidyDensity-1.2.6/TidyDensity/man/util_cauchy_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_chisquare_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_exponential_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_f_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_gamma_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_geometric_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_hypergeometric_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_logistic_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_lognormal_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_negative_binomial_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_normal_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_pareto_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_poisson_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_t_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_uniform_stats_tbl.Rd | 1 TidyDensity-1.2.6/TidyDensity/man/util_weibull_stats_tbl.Rd | 1 45 files changed, 143 insertions(+), 101 deletions(-)
Title: Delaunay and Voronoï Tessellations
Description: Delaunay and Voronoï tessellations, with emphasis on the
two-dimensional and the three-dimensional cases (the package provides
functions to plot the tessellations for these cases). Delaunay
tessellations are computed in C with the help of the 'Qhull' library
<http://www.qhull.org/>.
Author: Stephane Laurent [aut, cre],
C. B. Barber [cph] ,
The Geometry Center [cph]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between tessellation versions 2.1.3 dated 2023-05-30 and 2.2.0 dated 2023-10-30
tessellation-2.1.3/tessellation/man/getDelaunaySimplicies.Rd |only tessellation-2.2.0/tessellation/DESCRIPTION | 10 tessellation-2.2.0/tessellation/MD5 | 51 tessellation-2.2.0/tessellation/NAMESPACE | 7 tessellation-2.2.0/tessellation/NEWS.md | 74 tessellation-2.2.0/tessellation/R/colors.R |only tessellation-2.2.0/tessellation/R/delaunay.R | 196 +- tessellation-2.2.0/tessellation/R/voronoi.R | 930 +++++------ tessellation-2.2.0/tessellation/README.md | 95 - tessellation-2.2.0/tessellation/man/Edge2.Rd | 372 ++-- tessellation-2.2.0/tessellation/man/Edge3.Rd | 384 ++-- tessellation-2.2.0/tessellation/man/IEdge2.Rd | 242 +- tessellation-2.2.0/tessellation/man/IEdge3.Rd | 242 +- tessellation-2.2.0/tessellation/man/cellVertices.Rd | 70 tessellation-2.2.0/tessellation/man/centricCuboctahedron.Rd | 28 tessellation-2.2.0/tessellation/man/delaunay.Rd | 16 tessellation-2.2.0/tessellation/man/getDelaunaySimplices.Rd |only tessellation-2.2.0/tessellation/man/isBoundedCell.Rd | 36 tessellation-2.2.0/tessellation/man/plotBoundedCell2D.Rd | 92 - tessellation-2.2.0/tessellation/man/plotBoundedCell3D.Rd | 104 - tessellation-2.2.0/tessellation/man/plotDelaunay2D.Rd | 120 - tessellation-2.2.0/tessellation/man/plotDelaunay3D.Rd | 137 - tessellation-2.2.0/tessellation/man/plotVoronoiDiagram.Rd | 181 +- tessellation-2.2.0/tessellation/man/surface.Rd | 62 tessellation-2.2.0/tessellation/man/teapot.Rd | 28 tessellation-2.2.0/tessellation/man/tessellation-imports.Rd | 28 tessellation-2.2.0/tessellation/man/volume.Rd | 42 tessellation-2.2.0/tessellation/man/voronoi.Rd | 66 28 files changed, 1829 insertions(+), 1784 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: Hierarchical continuous (and discrete) time state space modelling, for linear
and nonlinear systems measured by continuous variables, with limited support for
binary data. The subject specific dynamic system is modelled as a stochastic
differential equation (SDE) or difference equation, measurement models are typically multivariate normal factor models.
Linear mixed effects SDE's estimated via maximum likelihood and optimization are the default.
Nonlinearities, (state dependent parameters) and random effects on all parameters
are possible, using either max likelihood / max a posteriori optimization
(with optional importance sampling) or Stan's Hamiltonian Monte Carlo sampling.
See <https://github.com/cdriveraus/ctsem/raw/master/vignettes/hierarchicalmanual.pdf>
for details. Priors may be used. For the conceptual overview of the hierarchical Bayesian
linear SDE approach,
see <https://www.researchgate.net/publication/324093594_Hierarchical_Bayesian_Continuous_Time_Dynamic_Mod [...truncated...]
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph],
Trustees of Columbia University [cph]
Maintainer: Charles Driver <charles.driver@ife.uzh.ch>
Diff between ctsem versions 3.9.0 dated 2023-09-14 and 3.9.1 dated 2023-10-30
ctsem-3.9.0/ctsem/R/ctChisqTest.R |only ctsem-3.9.1/ctsem/DESCRIPTION | 8 ctsem-3.9.1/ctsem/MD5 | 58 +-- ctsem-3.9.1/ctsem/NAMESPACE | 2 ctsem-3.9.1/ctsem/NEWS.md | 7 ctsem-3.9.1/ctsem/R/ctACF.R | 177 ++++++---- ctsem-3.9.1/ctsem/R/ctCompare.R |only ctsem-3.9.1/ctsem/R/ctKalman.R | 4 ctsem-3.9.1/ctsem/R/ctLOO.R | 188 +++++----- ctsem-3.9.1/ctsem/R/ctStanData.R | 5 ctsem-3.9.1/ctsem/R/ctStanFit.R | 9 ctsem-3.9.1/ctsem/R/ctStanKalman.R | 12 ctsem-3.9.1/ctsem/R/ctStanModel.R | 6 ctsem-3.9.1/ctsem/R/ctStanModelWriter.R | 228 ++++++------- ctsem-3.9.1/ctsem/R/ctStanPostPredict.R | 179 ++++++++++ ctsem-3.9.1/ctsem/R/ctSummarise.R | 4 ctsem-3.9.1/ctsem/R/ctsem-package.R | 6 ctsem-3.9.1/ctsem/R/sgd.R | 76 +--- ctsem-3.9.1/ctsem/R/stanWplot.R | 64 ++- ctsem-3.9.1/ctsem/R/stanoptimis.R | 50 +- ctsem-3.9.1/ctsem/data/ctstantestfit.rda |binary ctsem-3.9.1/ctsem/inst/doc/hierarchicalmanual.pdf |binary ctsem-3.9.1/ctsem/inst/stan/ctsm.stan | 190 +++++----- ctsem-3.9.1/ctsem/inst/stan/ctsmgen.stan | 202 +++++------ ctsem-3.9.1/ctsem/man/ctACF.Rd | 3 ctsem-3.9.1/ctsem/man/ctChisqTest.Rd | 2 ctsem-3.9.1/ctsem/man/ctLOO.Rd | 11 ctsem-3.9.1/ctsem/man/ctPostPredData.Rd |only ctsem-3.9.1/ctsem/man/ctPostPredPlots.Rd |only ctsem-3.9.1/ctsem/tests/testthat/test-bivariatetrait_hmc.R | 4 ctsem-3.9.1/ctsem/tests/testthat/test-ctRaschExampleTest.R | 2 ctsem-3.9.1/ctsem/tests/testthat/test-sunspots.R | 1 32 files changed, 911 insertions(+), 587 deletions(-)
More information about intamapInteractive at CRAN
Permanent link
Title: Testing Gene-Environment Interactions Through Genetic Risk
Scores
Description: Statistical testing procedures for detecting
GxE (gene-environment) interactions. The main focus lies on
GRSxE interaction tests that aim at detecting GxE interactions
through GRS (genetic risk scores). Moreover, a novel testing
procedure based on bagging and OOB (out-of-bag) predictions is
implemented for incorporating all available observations at
both GRS construction and GxE testing (Lau et al., 2023,
<doi:10.1038/s41598-023-28172-4>).
Author: Michael Lau [aut, cre]
Maintainer: Michael Lau <michael.lau@hhu.de>
Diff between GRSxE versions 1.0.0 dated 2022-11-11 and 1.0.1 dated 2023-10-30
DESCRIPTION | 13 +++++++------ MD5 | 10 +++++----- R/GRSxE.R | 14 ++++++++------ build/partial.rdb |binary man/GRSxE.Rd | 10 ++++++---- man/GxE.Rd | 7 ++++--- 6 files changed, 30 insertions(+), 24 deletions(-)
Title: Grouping Satellite Bands by Spectral and Spatial Resolution
Description: Given raster files directly downloaded from various websites, it
generates a raster structure where it merges them if they are tiles of the
same scene and classifies them according to their spectral and spatial
resolution for easy access by name.
Author: Jose Samos [aut, cre, cph]
Maintainer: Jose Samos <jsamos@ugr.es>
Diff between satres versions 1.0.0 dated 2023-10-03 and 1.1.0 dated 2023-10-30
satres-1.0.0/satres/man/sat_aggregate.Rd |only satres-1.1.0/satres/DESCRIPTION | 8 satres-1.1.0/satres/MD5 | 67 +++-- satres-1.1.0/satres/NAMESPACE | 30 +- satres-1.1.0/satres/NEWS.md | 6 satres-1.1.0/satres/R/export.R |only satres-1.1.0/satres/R/misc.R | 55 ++-- satres-1.1.0/satres/R/satres.R | 225 ++++++++++---------- satres-1.1.0/satres/R/sbands.R |only satres-1.1.0/satres/R/transf.R |only satres-1.1.0/satres/README.md | 13 - satres-1.1.0/satres/build/vignette.rds |binary satres-1.1.0/satres/inst/doc/satres.R | 2 satres-1.1.0/satres/inst/doc/satres.Rmd | 6 satres-1.1.0/satres/inst/doc/satres.html | 20 - satres-1.1.0/satres/inst/doc/v10-transf.R |only satres-1.1.0/satres/inst/doc/v10-transf.Rmd |only satres-1.1.0/satres/inst/doc/v10-transf.html |only satres-1.1.0/satres/inst/extdata/lanjaron.gpkg |only satres-1.1.0/satres/inst/extdata/satres.tar |binary satres-1.1.0/satres/inst/extdata/satres.zip |binary satres-1.1.0/satres/inst/figures/satres.png |binary satres-1.1.0/satres/man/as_SpatRaster.Rd | 81 +++---- satres-1.1.0/satres/man/check_bands.Rd |only satres-1.1.0/satres/man/check_spatial_resolution.Rd |only satres-1.1.0/satres/man/clip_bands.Rd |only satres-1.1.0/satres/man/figures/logo.png |binary satres-1.1.0/satres/man/find_name_to_files.Rd | 40 +-- satres-1.1.0/satres/man/get_band_names.Rd |only satres-1.1.0/satres/man/get_spatial_resolution.Rd | 77 +++--- satres-1.1.0/satres/man/get_spectral_band_names.Rd |only satres-1.1.0/satres/man/merge_tiles.Rd |only satres-1.1.0/satres/man/sat_band_names.Rd |only satres-1.1.0/satres/man/sat_dimensions.Rd |only satres-1.1.0/satres/man/sat_names.Rd |only satres-1.1.0/satres/man/satres.Rd | 107 ++++----- satres-1.1.0/satres/man/save_by_resolution.Rd | 92 ++++---- satres-1.1.0/satres/man/select_band_files.Rd | 38 +-- satres-1.1.0/satres/man/select_bands.Rd |only satres-1.1.0/satres/tests/testthat/test-export.R |only satres-1.1.0/satres/tests/testthat/test-prev.R | 21 + satres-1.1.0/satres/tests/testthat/test-satres.R | 142 +++++++++++- satres-1.1.0/satres/tests/testthat/test-transf.R |only satres-1.1.0/satres/vignettes/satres.Rmd | 6 satres-1.1.0/satres/vignettes/v10-transf.Rmd |only 45 files changed, 611 insertions(+), 425 deletions(-)
Title: Fisher's z-Tests Concerning Difference of Correlations
Description: Computations of Fisher's z-tests concerning different kinds of correlation differences. Additionally, approaches to estimating statistical power via Monte Carlo simulations are implemented.
Author: Christian Bloetner
Maintainer: Christian Bloetner <c.bloetner@gmail.com>
Diff between diffcor versions 0.8.0 dated 2023-08-28 and 0.8.1 dated 2023-10-30
DESCRIPTION | 8 +-- MD5 | 22 +++++--- R/diffcor.dep.R | 82 ++++++++++++++++----------------- R/diffpwr.dep.R |only R/diffpwr.one.R | 34 ++++--------- R/diffpwr.two.R | 64 +++++++++++--------------- R/visual_mc.R |only man/diffcor.dep.Rd | 108 ++++++++++++++++++++++---------------------- man/diffcor.one.Rd | 112 +++++++++++++++++++++++---------------------- man/diffcor.two.Rd | 130 ++++++++++++++++++++++++++--------------------------- man/diffpwr.dep.Rd |only man/diffpwr.one.Rd | 42 +++++++++++------ man/diffpwr.two.Rd | 51 +++++++++++++------- man/visual_mc.Rd |only 14 files changed, 335 insertions(+), 318 deletions(-)
Title: Read Untidy Excel Files
Description: Imports non-tabular from Excel files into R. Exposes cell content,
position and formatting in a tidy structure for further manipulation.
Tokenizes Excel formulas. Supports '.xlsx' and '.xlsm' via the embedded
'RapidXML' C++ library <https://rapidxml.sourceforge.net>. Does not support
'.xlsb' or '.xls'.
Author: Duncan Garmonsway [aut, cre],
Hadley Wickham [ctb] ,
Jenny Bryan [ctb] ,
RStudio [cph] ,
Marcin Kalicinski [ctb, cph]
Maintainer: Duncan Garmonsway <nacnudus@gmail.com>
Diff between tidyxl versions 1.0.8 dated 2022-09-01 and 1.0.9 dated 2023-10-30
tidyxl-1.0.8/tidyxl/man/tidyxl.Rd |only tidyxl-1.0.8/tidyxl/src/Makevars |only tidyxl-1.0.8/tidyxl/src/Makevars.win |only tidyxl-1.0.8/tidyxl/vignettes/tidy_xlsx.gif |only tidyxl-1.0.9/tidyxl/DESCRIPTION | 11 tidyxl-1.0.9/tidyxl/MD5 | 40 - tidyxl-1.0.9/tidyxl/NEWS.md | 4 tidyxl-1.0.9/tidyxl/R/data.R | 2 tidyxl-1.0.9/tidyxl/R/tidyxl-package.R | 7 tidyxl-1.0.9/tidyxl/README.md | 134 ++-- tidyxl-1.0.9/tidyxl/build/vignette.rds |binary tidyxl-1.0.9/tidyxl/inst/doc/data-validation-rules.html | 412 +++++++------- tidyxl-1.0.9/tidyxl/inst/doc/smells.R | 2 tidyxl-1.0.9/tidyxl/inst/doc/smells.html | 138 ++-- tidyxl-1.0.9/tidyxl/inst/doc/tidyxl.R | 26 tidyxl-1.0.9/tidyxl/inst/doc/tidyxl.Rmd | 10 tidyxl-1.0.9/tidyxl/inst/doc/tidyxl.html | 452 +++++++--------- tidyxl-1.0.9/tidyxl/man/excel_functions.Rd | 2 tidyxl-1.0.9/tidyxl/man/figures |only tidyxl-1.0.9/tidyxl/man/tidy_xlsx.Rd | 6 tidyxl-1.0.9/tidyxl/man/tidyxl-package.Rd |only tidyxl-1.0.9/tidyxl/man/xlsx_formats.Rd | 6 tidyxl-1.0.9/tidyxl/src/rapidxml_print.h | 2 tidyxl-1.0.9/tidyxl/vignettes/tidyxl.Rmd | 10 24 files changed, 639 insertions(+), 625 deletions(-)
Title: Animation for 'shiny' Elements
Description: An extension of 'animate.css' that allows user to easily add animations to any UI element in 'shiny' app using the elements id.
Author: Swechhya Bista
Maintainer: Swechhya Bista <swechhyabista@gmail.com>
Diff between shinyanimate versions 0.3.0 dated 2019-01-13 and 0.4.0 dated 2023-10-30
DESCRIPTION | 9 - LICENSE | 4 MD5 | 27 ++-- NAMESPACE | 12 +- R/anim.R | 226 ++++++++++++++++++++--------------------- R/global.R | 34 +++--- README.md | 146 +++++++++++++------------- inst/assets/addClass.js | 127 +++++++++++------------ inst/assets/animate.min.css | 19 +-- inst/assets/scrollAnimation.js | 54 +++++---- inst/assets/util.js |only man/addHoverAnim.Rd | 70 ++++++------ man/addScrollAnim.Rd | 84 +++++++-------- man/startAnim.Rd | 78 +++++++------- man/withAnim.Rd | 34 +++--- 15 files changed, 465 insertions(+), 459 deletions(-)
Title: Interpolation of Data with Variable Spatial Support
Description: Data with irregular spatial support, such as runoff related data or data from administrative units, can with 'rtop' be interpolated to locations without observations with the top-kriging method. A description of the package is given by Skøien et al (2014) <doi:10.1016/j.cageo.2014.02.009>.
Author: Jon Olav Skoeien [aut, cre],
Qingyun Duan [ctb]
Maintainer: Jon Olav Skoeien <jon.skoien@gmail.com>
Diff between rtop versions 0.6-6 dated 2023-03-31 and 0.6-8 dated 2023-10-30
rtop-0.6-6/rtop/tests/rtop.rout.save |only rtop-0.6-8/rtop/DESCRIPTION | 11 +- rtop-0.6-8/rtop/MD5 | 50 +++++------ rtop-0.6-8/rtop/NAMESPACE | 4 rtop-0.6-8/rtop/R/findOverlap.R | 8 + rtop-0.6-8/rtop/R/fitVariogram.R | 4 rtop-0.6-8/rtop/R/rtop.R | 8 - rtop-0.6-8/rtop/man/checkVario.Rd | 11 -- rtop-0.6-8/rtop/man/createRtopObject.Rd | 14 --- rtop-0.6-8/rtop/man/downloadRtopExampleData.rd | 3 rtop-0.6-8/rtop/man/gDist.Rd | 8 - rtop-0.6-8/rtop/man/getRtopParams.Rd | 6 - rtop-0.6-8/rtop/man/plot.rtopVariogramCloud.Rd | 11 -- rtop-0.6-8/rtop/man/readAreaInfo.Rd | 4 rtop-0.6-8/rtop/man/readAreas.Rd | 4 rtop-0.6-8/rtop/man/rtop-package.Rd | 12 -- rtop-0.6-8/rtop/man/rtopCluster.Rd | 2 rtop-0.6-8/rtop/man/rtopFitVariogram.Rd | 22 +--- rtop-0.6-8/rtop/man/rtopKrige.Rd | 12 -- rtop-0.6-8/rtop/man/rtopSim.Rd | 13 -- rtop-0.6-8/rtop/man/rtopVariogram.Rd | 4 rtop-0.6-8/rtop/man/sceua.Rd | 6 - rtop-0.6-8/rtop/man/varMat.Rd | 6 - rtop-0.6-8/rtop/man/variogramModel.Rd | 6 - rtop-0.6-8/rtop/tests/rtop.R | 2 rtop-0.6-8/rtop/tests/rtop.Rout.save |only rtop-0.6-8/rtop/tests/rtop_sf.Rout.save | 113 ++++++++++++------------- 27 files changed, 155 insertions(+), 189 deletions(-)
Title: Procedures for Automated Interpolation
Description: Geostatistical interpolation has traditionally been done by manually fitting a variogram and then interpolating. Here, we introduce classes and methods that can do this interpolation automatically. Pebesma et al (2010) gives an overview of the methods behind and possible usage <doi:10.1016/j.cageo.2010.03.019>.
Author: Edzer Pebesma [aut],
Jon Olav Skoien [aut, cre],
Olivier Baume [ctb],
A Chorti [ctb],
Dionisis Hristopulos [ctb],
Hannes Kazianka [ctb],
Stepahnie Melles [ctb],
Giannis Spiliopoulos [ctb]
Maintainer: Jon Olav Skoien <jon.skoien@gmail.com>
Diff between intamap versions 1.5-6 dated 2023-03-17 and 1.5-7 dated 2023-10-30
DESCRIPTION | 10 ++--- MD5 | 19 +++++----- NAMESPACE | 1 R/default.R | 5 -- R/init.R | 87 ++++++------------------------------------------- R/initOld.R |only R/methodParameters.r | 53 ----------------------------- man/bayesCopula.Rd | 4 +- man/blockPredict.Rd | 5 +- man/intamap-package.Rd | 27 ++++++++------- tests/interpolate.R | 2 - 11 files changed, 48 insertions(+), 165 deletions(-)
Title: Generate Personality Insights Sunburst Diagrams
Description: Generates Personality Insights sunburst diagrams based on
'IBM Watson' Personality Insights service output.
Author: Rhian Davies [aut, cre],
Steph Locke [aut] ,
IBM [cph] ,
Hendrik Feddersen [fnd] ,
Kent Russell [aut],
Maelle Salmon [ctb] ,
Jumping Rivers [fnd]
Maintainer: Rhian Davies <rhian@jumpingrivers.com>
Diff between ibmsunburst versions 0.1.2 dated 2022-10-10 and 0.1.3 dated 2023-10-30
ibmsunburst-0.1.2/ibmsunburst/R/ibmsunburst-package.r |only ibmsunburst-0.1.3/ibmsunburst/DESCRIPTION | 6 ibmsunburst-0.1.3/ibmsunburst/MD5 | 10 ibmsunburst-0.1.3/ibmsunburst/NEWS.md | 4 ibmsunburst-0.1.3/ibmsunburst/R/ibmsunburst-package.R |only ibmsunburst-0.1.3/ibmsunburst/build/vignette.rds |binary ibmsunburst-0.1.3/ibmsunburst/inst/doc/ibmsunburst.html | 183 +++++++--------- 7 files changed, 102 insertions(+), 101 deletions(-)
Title: Inferring Cell-Specific Gene Regulatory Network
Description: A method for inferring cell-specific gene regulatory network from single-cell sequencing data.
Author: Meng Xu [aut, cre]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between inferCSN versions 0.99.6 dated 2023-10-27 and 0.99.7 dated 2023-10-30
DESCRIPTION | 8 +-- MD5 | 22 +++++----- R/inferCSN.R | 2 README.md | 12 +++-- src/BetaVector.cpp | 33 ++++++---------- src/CDL012Swaps.cpp | 18 +++++++- src/DT2Matrix.cpp | 33 +++++++++++----- src/Grid1D.cpp | 19 ++++++--- src/include/BetaVector.h | 1 src/include/CD.h | 35 +++++++++++++++-- src/include/GridParams.h | 10 +++- src/include/Params.h | 95 ++++++++++++++++++++++++++++++++++++++--------- 12 files changed, 206 insertions(+), 82 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data
management system with support for the Structured Query Language (SQL). This package includes all of
DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Muehleisen [aut, cre] ,
Mark Raasveldt [aut] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrochers [cph],
Victor Z [...truncated...]
Maintainer: Hannes Muehleisen <hannes@cwi.nl>
Diff between duckdb versions 0.9.1 dated 2023-10-13 and 0.9.1-1 dated 2023-10-30
DESCRIPTION | 6 +-- MD5 | 20 ++++++------- R/backend-dbplyr__duckdb_connection.R | 2 - man/backend-duckdb.Rd | 2 + src/duckdb/src/function/scalar/string/concat.cpp | 5 ++- src/utils.cpp | 5 --- tests/testthat/_snaps/backend-dbplyr__duckdb_connection.md | 16 +++++----- tests/testthat/helper-DBItest.R | 2 - tests/testthat/test-DBItest.R | 2 - tests/testthat/test_arrow_stream.R | 1 tests/testthat/test_tbl__duckdb_connection.R | 20 +++++++++++-- 11 files changed, 49 insertions(+), 32 deletions(-)
Title: Run Code 'With' Temporarily Modified Global State
Description: A set of functions to run code 'with' safely and
temporarily modified global state. Many of these functions were
originally a part of the 'devtools' package, this provides a simple
package with limited dependencies to provide access to these
functions.
Author: Jim Hester [aut],
Lionel Henry [aut, cre],
Kirill Mueller [aut],
Kevin Ushey [aut],
Hadley Wickham [aut],
Winston Chang [aut],
Jennifer Bryan [ctb],
Richard Cotton [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Lionel Henry <lionel@posit.co>
Diff between withr versions 2.5.1 dated 2023-09-26 and 2.5.2 dated 2023-10-30
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ build/vignette.rds |binary inst/doc/changing-and-restoring-state.R | 4 ++-- tests/testthat/_snaps/defer.md | 2 +- 6 files changed, 16 insertions(+), 11 deletions(-)
Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images.
Contains over 3000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.
Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks.
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlatio [...truncated...]
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat versions 3.0-6 dated 2023-05-17 and 3.0-7 dated 2023-10-30
spatstat-3.0-6/spatstat/inst/doc/shapefiles.R |only spatstat-3.0-6/spatstat/inst/doc/shapefiles.Rnw |only spatstat-3.0-6/spatstat/inst/doc/shapefiles.pdf |only spatstat-3.0-6/spatstat/vignettes/shapefiles.Rnw |only spatstat-3.0-7/spatstat/DESCRIPTION | 16 +- spatstat-3.0-7/spatstat/MD5 | 40 ++--- spatstat-3.0-7/spatstat/NEWS | 23 +++ spatstat-3.0-7/spatstat/build/vignette.rds |binary spatstat-3.0-7/spatstat/inst/doc/bugfixes.Rnw | 18 ++ spatstat-3.0-7/spatstat/inst/doc/bugfixes.pdf |binary spatstat-3.0-7/spatstat/inst/doc/datasets.pdf |binary spatstat-3.0-7/spatstat/inst/doc/fv.R |only spatstat-3.0-7/spatstat/inst/doc/fv.Rnw |only spatstat-3.0-7/spatstat/inst/doc/fv.pdf |only spatstat-3.0-7/spatstat/inst/doc/getstart.pdf |binary spatstat-3.0-7/spatstat/inst/doc/packagesizes.txt | 2 spatstat-3.0-7/spatstat/inst/doc/replicated.pdf |binary spatstat-3.0-7/spatstat/inst/doc/spatstatguisize.txt | 1 spatstat-3.0-7/spatstat/inst/doc/updates.Rnw | 133 ++++++++++++++++--- spatstat-3.0-7/spatstat/inst/doc/updates.pdf |binary spatstat-3.0-7/spatstat/man/macros/defns.Rd | 5 spatstat-3.0-7/spatstat/man/spatstat-package.Rd | 10 - spatstat-3.0-7/spatstat/vignettes/bugfixes.Rnw | 18 ++ spatstat-3.0-7/spatstat/vignettes/fv.Rnw |only spatstat-3.0-7/spatstat/vignettes/updates.Rnw | 133 ++++++++++++++++--- 25 files changed, 334 insertions(+), 65 deletions(-)
Title: Translate Text
Description: The goal of the this package is to provide easy methods to
translate pieces of text. Functions send requests to translation services online.
Author: Tomer Iwan [aut, cre, cph]
Maintainer: Tomer Iwan <t.iwan@vu.nl>
Diff between polyglotr versions 1.2.1 dated 2023-08-08 and 1.2.2 dated 2023-10-30
DESCRIPTION | 10 MD5 | 38 - NAMESPACE | 2 NEWS.md | 29 - R/batch_translate.R |only R/create_translation_table.R | 6 R/google_translate.R | 4 R/google_translate_file.R | 2 R/linguee_external_sources.R |only R/linguee_translation_examples.R |only README.md | 19 build/vignette.rds |binary inst/doc/Linguee.R |only inst/doc/Linguee.Rmd |only inst/doc/Linguee.html |only inst/doc/Movie_Reviews.R | 58 +- inst/doc/Movie_Reviews.html | 896 ++++++++++++++++++------------------ inst/doc/polyglotr.R | 50 +- inst/doc/polyglotr.html | 816 ++++++++++++++++---------------- man/batch_translate.Rd |only man/google_translate.Rd | 2 man/linguee_external_sources.Rd |only man/linguee_translation_examples.Rd |only tests/testthat/helpers.R | 2 vignettes/Linguee.Rmd |only 25 files changed, 973 insertions(+), 961 deletions(-)
Title: Automated Uncertainty Analysis
Description: Methods and tools for model selection and multi-model inference (Burnham and Anderson (2002) <doi:10.1007/b97636>, among others).
'SUR' (for parameter estimation), 'logit'/'probit' (for binary classification), and 'VARMA' (for time-series forecasting) are implemented.
Evaluations are both in-sample and out-of-sample.
It is designed to be efficient in terms of CPU usage and memory consumption.
Author: Ramin Mojab [aut, cre],
Stephen Becker [cph] by Ciyou Zhu . L-BFGS-B Version 3.0 is an
algorithmic update from 2011, with coding changes by J. L. Morales)
Maintainer: Ramin Mojab <rmojab63@gmail.com>
Diff between ldt versions 0.4.2 dated 2023-10-21 and 0.4.5 dated 2023-10-30
ldt-0.4.2/ldt/src/mnormal.cpp |only ldt-0.4.5/ldt/DESCRIPTION | 6 - ldt-0.4.5/ldt/MD5 | 105 ++++++++++----------- ldt-0.4.5/ldt/NEWS.md | 2 ldt-0.4.5/ldt/R/search.R | 24 ++-- ldt-0.4.5/ldt/R/sur.R | 10 +- ldt-0.4.5/ldt/build/partial.rdb |binary ldt-0.4.5/ldt/man/estim.sur.Rd | 10 +- ldt-0.4.5/ldt/man/get.search.metrics.Rd | 24 ++-- ldt-0.4.5/ldt/src/Makevars | 8 + ldt-0.4.5/ldt/src/clustering.h | 22 +--- ldt-0.4.5/ldt/src/data_split.cpp | 14 +- ldt-0.4.5/ldt/src/data_split.h | 4 ldt-0.4.5/ldt/src/descriptive.cpp | 13 +- ldt-0.4.5/ldt/src/discrete_choice.cpp | 25 ++--- ldt-0.4.5/ldt/src/discrete_choice.h | 15 +-- ldt-0.4.5/ldt/src/discrete_choice_extended.cpp | 10 -- ldt-0.4.5/ldt/src/discrete_choice_modelset.cpp | 4 ldt-0.4.5/ldt/src/discrete_choice_sim.cpp | 58 ++++++----- ldt-0.4.5/ldt/src/distance.cpp | 87 ++++++++--------- ldt-0.4.5/ldt/src/distribution_gld.cpp | 4 ldt-0.4.5/ldt/src/distributions.h | 3 ldt-0.4.5/ldt/src/group_data.cpp | 15 --- ldt-0.4.5/ldt/src/hcluster.cpp | 59 ++++++------ ldt-0.4.5/ldt/src/lmbfgsb.cpp | 2 ldt-0.4.5/ldt/src/matrix.cpp | 75 --------------- ldt-0.4.5/ldt/src/matrix.h | 8 + ldt-0.4.5/ldt/src/matrix_la.cpp | 6 - ldt-0.4.5/ldt/src/modelset.cpp | 23 ++-- ldt-0.4.5/ldt/src/mpolynomial.cpp | 9 + ldt-0.4.5/ldt/src/r_clustering.cpp | 12 +- ldt-0.4.5/ldt/src/r_dc.cpp | 30 ++---- ldt-0.4.5/ldt/src/r_func.cpp | 2 ldt-0.4.5/ldt/src/r_ldt.cpp | 29 +++-- ldt-0.4.5/ldt/src/r_statistics.cpp | 14 +- ldt-0.4.5/ldt/src/r_sur.cpp | 19 +-- ldt-0.4.5/ldt/src/r_varma.cpp | 22 ++-- ldt-0.4.5/ldt/src/searcher.cpp | 18 ++- ldt-0.4.5/ldt/src/searcher_reg.cpp | 32 ++++-- ldt-0.4.5/ldt/src/searchers.h | 25 ++--- ldt-0.4.5/ldt/src/statistics.cpp | 4 ldt-0.4.5/ldt/src/summary.cpp | 40 ++------ ldt-0.4.5/ldt/src/sur.cpp | 6 - ldt-0.4.5/ldt/src/sur_modelset.cpp | 2 ldt-0.4.5/ldt/src/sur_simulation.cpp | 2 ldt-0.4.5/ldt/src/varma.cpp | 122 ------------------------- ldt-0.4.5/ldt/src/varma.h | 6 - ldt-0.4.5/ldt/src/varma_forecast.cpp | 2 ldt-0.4.5/ldt/src/varma_modelset.cpp | 14 +- ldt-0.4.5/ldt/src/varma_restriction.cpp | 2 ldt-0.4.5/ldt/src/varma_sizes.cpp | 2 ldt-0.4.5/ldt/src/vmatrix.cpp | 14 ++ ldt-0.4.5/ldt/tests/testthat/test-data.R | 60 ++++++------ ldt-0.4.5/ldt/tests/testthat/test-varma.R | 17 ++- 54 files changed, 485 insertions(+), 656 deletions(-)
Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Yihui Xie [aut, cre] ,
Abhraneel Sarma [ctb],
Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Amar Al-Zubaidi [ctb],
Andre Simon [ctb] ,
Aron Atkins [ctb],
Aaron Wolen [ctb],
Ashley Manton [ctb],
Atsushi Yasumoto [ctb] ,
Ben Baumer [ctb], [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.44 dated 2023-09-11 and 1.45 dated 2023-10-30
DESCRIPTION | 6 ++--- MD5 | 40 +++++++++++++++++++-------------------- R/block.R | 5 +++- R/concordance.R | 6 ++--- R/defaults.R | 9 +++++++- R/hooks-latex.R | 10 +++++++-- R/hooks-md.R | 2 - R/output.R | 35 ++++++++++++++++++---------------- R/parser.R | 29 ++++++++++++++++++++++++++-- R/table.R | 3 -- R/utils.R | 44 ++++++++++++++++++++++++------------------- inst/doc/datatables.html | 2 - inst/doc/docco-classic.html | 4 +-- inst/doc/docco-linear.html | 2 - inst/doc/knit_expand.html | 6 ++--- inst/doc/knit_print.html | 14 ++++++------- inst/doc/knitr-intro.html | 12 +++++------ inst/doc/knitr-markdown.html | 4 +-- inst/doc/knitr-refcard.pdf |binary inst/misc/toggleR.js | 23 +++++++--------------- tests/testit/test-utils.R | 22 +++++++++++++++++++++ 21 files changed, 170 insertions(+), 108 deletions(-)
Title: API Client for US Treasury Fiscal Data
Description: Make requests from the US Treasury Fiscal Data API endpoints.
Author: Guillermo Roditi Dominguez [aut, cre]
Maintainer: Guillermo Roditi Dominguez <guillermo@newriverinvestments.com>
Diff between ustfd versions 0.4.1 dated 2023-08-21 and 0.4.2 dated 2023-10-30
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/sysdata.rda |binary README.md | 35 ++++++++++++++++++++++------------- 5 files changed, 35 insertions(+), 20 deletions(-)
Title: Competing Risks Estimation
Description: Provides an intuitive interface for working with the
competing risk endpoints. The package wraps the 'cmprsk' package, and
exports functions for univariate cumulative incidence estimates and
competing risk regression. Methods follow those introduced in Fine and
Gray (1999) <doi:10.1002/sim.7501>.
Author: Daniel D. Sjoberg [aut, cre, cph]
,
Teng Fei [aut]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between tidycmprsk versions 0.2.0 dated 2022-10-03 and 1.0.0 dated 2023-10-30
tidycmprsk-0.2.0/tidycmprsk/R/autoplot.R |only tidycmprsk-0.2.0/tidycmprsk/man/autoplot.tidycuminc.Rd |only tidycmprsk-0.2.0/tidycmprsk/man/figures/README-gtsummary_print-1.png |only tidycmprsk-0.2.0/tidycmprsk/man/figures/README-gtsummary_print2-1.png |only tidycmprsk-0.2.0/tidycmprsk/man/figures/README-unnamed-chunk-4-1.png |only tidycmprsk-0.2.0/tidycmprsk/tests/testthat/test-autoplot.R |only tidycmprsk-1.0.0/tidycmprsk/DESCRIPTION | 19 tidycmprsk-1.0.0/tidycmprsk/MD5 | 87 tidycmprsk-1.0.0/tidycmprsk/NAMESPACE | 134 - tidycmprsk-1.0.0/tidycmprsk/NEWS.md | 10 tidycmprsk-1.0.0/tidycmprsk/R/base_methods.R | 366 ++-- tidycmprsk-1.0.0/tidycmprsk/R/broom_methods.R | 203 -- tidycmprsk-1.0.0/tidycmprsk/R/cuminc.R | 8 tidycmprsk-1.0.0/tidycmprsk/R/data.R | 38 tidycmprsk-1.0.0/tidycmprsk/R/deprecated.R |only tidycmprsk-1.0.0/tidycmprsk/R/print.R | 434 ++-- tidycmprsk-1.0.0/tidycmprsk/R/reexport.R | 90 - tidycmprsk-1.0.0/tidycmprsk/R/tbl_cuminc.R | 877 +++++----- tidycmprsk-1.0.0/tidycmprsk/R/tidycmprsk-package.R | 32 tidycmprsk-1.0.0/tidycmprsk/README.md | 288 +-- tidycmprsk-1.0.0/tidycmprsk/build/partial.rdb |binary tidycmprsk-1.0.0/tidycmprsk/inst/WORDLIST | 48 tidycmprsk-1.0.0/tidycmprsk/man/add_cuminc.Rd | 190 +- tidycmprsk-1.0.0/tidycmprsk/man/base_methods_crr.Rd | 90 - tidycmprsk-1.0.0/tidycmprsk/man/base_methods_cuminc.Rd | 64 tidycmprsk-1.0.0/tidycmprsk/man/broom_methods_crr.Rd | 116 - tidycmprsk-1.0.0/tidycmprsk/man/broom_methods_cuminc.Rd | 194 +- tidycmprsk-1.0.0/tidycmprsk/man/crr.Rd | 94 - tidycmprsk-1.0.0/tidycmprsk/man/cuminc.Rd | 152 - tidycmprsk-1.0.0/tidycmprsk/man/deprecated.Rd |only tidycmprsk-1.0.0/tidycmprsk/man/figures/README-gtsummary-crr.png |only tidycmprsk-1.0.0/tidycmprsk/man/figures/README-gtsummary-cuminc.png |only tidycmprsk-1.0.0/tidycmprsk/man/figures/README-unnamed-chunk-5-1.png |binary tidycmprsk-1.0.0/tidycmprsk/man/predict.tidycrr.Rd | 72 tidycmprsk-1.0.0/tidycmprsk/man/print.Rd | 42 tidycmprsk-1.0.0/tidycmprsk/man/reexports.Rd | 66 tidycmprsk-1.0.0/tidycmprsk/man/tbl_cuminc.Rd | 164 - tidycmprsk-1.0.0/tidycmprsk/man/tidycmprsk-package.Rd | 61 tidycmprsk-1.0.0/tidycmprsk/man/trial.Rd | 58 tidycmprsk-1.0.0/tidycmprsk/tests/spelling.R | 6 tidycmprsk-1.0.0/tidycmprsk/tests/testthat.R | 8 tidycmprsk-1.0.0/tidycmprsk/tests/testthat/_snaps |only tidycmprsk-1.0.0/tidycmprsk/tests/testthat/test-crr-base_methods.R | 98 - tidycmprsk-1.0.0/tidycmprsk/tests/testthat/test-crr-broom_methods.R | 40 tidycmprsk-1.0.0/tidycmprsk/tests/testthat/test-crr.R | 18 tidycmprsk-1.0.0/tidycmprsk/tests/testthat/test-cuminc-base_methods.R | 36 tidycmprsk-1.0.0/tidycmprsk/tests/testthat/test-cuminc-broom_methods.R | 690 +++---- tidycmprsk-1.0.0/tidycmprsk/tests/testthat/test-cuminc.R | 18 tidycmprsk-1.0.0/tidycmprsk/tests/testthat/test-gtsummary.R | 114 - tidycmprsk-1.0.0/tidycmprsk/tests/testthat/test-tbl_cuminc.R | 25 50 files changed, 2548 insertions(+), 2502 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general
engine for big data processing, see <https://spark.apache.org/>. This
package supports connecting to local and remote Apache Spark clusters,
provides a 'dplyr' compatible back-end, and provides an interface to
Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut],
Kevin Kuo [aut] ,
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
Hossein Falaki [aut],
Lu Wang [aut],
Andy Zhang [aut],
Yitao Li [aut] ,
Jozef Hajnala [ctb],
Maciej Szymkiewicz [ctb] ,
Wil Davis [ctb],
Edgar Ruiz [au [...truncated...]
Maintainer: Edgar Ruiz <edgar@rstudio.com>
Diff between sparklyr versions 1.8.3 dated 2023-09-02 and 1.8.4 dated 2023-10-30
DESCRIPTION | 17 +++---- MD5 | 84 +++++++++++++++++++------------------- NAMESPACE | 11 +++- NEWS.md | 44 +++++++++++++++++++ R/connection_spark.R | 42 +++++++++---------- R/data_interface.R | 24 +++++----- R/dbi_spark_connection.R | 7 +-- R/do_spark.R | 2 R/dplyr_hof.R | 32 +++++++------- R/dplyr_spark.R | 49 ++++++++++++---------- R/dplyr_sql.R | 15 ------ R/imports.R | 3 - R/install_spark_versions.R | 2 R/livy_connection.R | 2 R/livy_invoke.R | 5 -- R/ml_clustering_power_iteration.R | 4 - R/ml_feature_dplyr_transformer.R | 2 R/ml_fpm_prefixspan.R | 4 - R/ml_transformation_methods.R | 6 ++ R/sdf_stat.R | 2 R/sdf_unnest_longer.R | 2 R/sdf_wrapper.R | 4 - R/shell_connection.R | 6 +- R/spark_apply_bundle.R | 4 - R/spark_compile.R | 1 R/spark_sql.R | 2 R/sql_utils.R | 2 R/tidyr_fill.R | 2 R/tidyr_nest.R | 2 R/tidyr_pivot_longer.R | 2 R/tidyr_pivot_wider.R | 2 R/tidyr_unite.R | 5 +- R/tidyr_utils.R | 2 inst/extdata/versions.json | 28 ++++++++++-- man/ml-transform-methods.Rd | 3 + man/ml_power_iteration.Rd | 4 - man/ml_prefixspan.Rd | 4 - man/registerDoSpark.Rd | 2 man/sdf_rexp.Rd | 2 man/spark_read_binary.Rd | 8 +-- man/spark_read_image.Rd | 12 ++--- man/spark_write_rds.Rd | 4 - man/sparklyr_get_backend_port.Rd | 6 +- 43 files changed, 268 insertions(+), 198 deletions(-)
Title: Tools for Internationalization and Portability in R Packages
Description: Translating messages in R packages is managed using the po
top-level directory and the 'gettext' program. This package provides
some helper functions for building this support in R packages, e.g.
common validation & I/O tasks.
Author: Michael Chirico [cre, aut],
Hadley Wickham [aut]
Maintainer: Michael Chirico <MichaelChirico4@gmail.com>
Diff between potools versions 0.2.2 dated 2021-07-12 and 0.2.4 dated 2023-10-30
potools-0.2.2/potools/tests/testthat/testthat-problems.rds |only potools-0.2.4/potools/DESCRIPTION | 37 potools-0.2.4/potools/MD5 | 118 +- potools-0.2.4/potools/NAMESPACE | 72 + potools-0.2.4/potools/NEWS.md | 36 potools-0.2.4/potools/R/check_cracked_messages.R | 56 + potools-0.2.4/potools/R/check_untranslated_cat.R | 54 + potools-0.2.4/potools/R/check_untranslated_src.R | 43 potools-0.2.4/potools/R/explain_plurals.R |only potools-0.2.4/potools/R/get_message_data.R | 97 +- potools-0.2.4/potools/R/get_po_messages.R | 10 potools-0.2.4/potools/R/get_r_messages.R | 107 +- potools-0.2.4/potools/R/get_src_messages.R | 95 + potools-0.2.4/potools/R/msgmerge.R | 86 + potools-0.2.4/potools/R/onLoad.R | 1 potools-0.2.4/potools/R/po_compile.R |only potools-0.2.4/potools/R/po_create.R |only potools-0.2.4/potools/R/po_extract.R |only potools-0.2.4/potools/R/po_update.R |only potools-0.2.4/potools/R/potools-package.R |only potools-0.2.4/potools/R/read_translation.R | 6 potools-0.2.4/potools/R/show_diagnostic_results.R | 16 potools-0.2.4/potools/R/specials_metadata.R | 12 potools-0.2.4/potools/R/translate_package.R | 358 ++++++- potools-0.2.4/potools/R/utils.R | 65 + potools-0.2.4/potools/R/write_po_file.R | 172 +++ potools-0.2.4/potools/README.md | 158 --- potools-0.2.4/potools/build/vignette.rds |binary potools-0.2.4/potools/inst/doc/custom-diagnostic.R | 13 potools-0.2.4/potools/inst/doc/custom-diagnostic.Rmd | 19 potools-0.2.4/potools/inst/doc/custom-diagnostic.html | 485 +++++++--- potools-0.2.4/potools/inst/doc/developers.R |only potools-0.2.4/potools/inst/doc/developers.Rmd |only potools-0.2.4/potools/inst/doc/developers.html |only potools-0.2.4/potools/inst/doc/translators.R |only potools-0.2.4/potools/inst/doc/translators.Rmd |only potools-0.2.4/potools/inst/doc/translators.html |only potools-0.2.4/potools/inst/extdata/language_metadata.csv | 9 potools-0.2.4/potools/inst/extdata/plurals_metadata.csv | 3 potools-0.2.4/potools/inst/po |only potools-0.2.4/potools/man/check_cracked_messages.Rd | 41 potools-0.2.4/potools/man/check_potools_sys_reqs.Rd | 50 - potools-0.2.4/potools/man/check_untranslated_cat.Rd | 56 - potools-0.2.4/potools/man/check_untranslated_src.Rd | 38 potools-0.2.4/potools/man/figures |only potools-0.2.4/potools/man/get_message_data.Rd | 94 + potools-0.2.4/potools/man/po_compile.Rd |only potools-0.2.4/potools/man/po_create.Rd |only potools-0.2.4/potools/man/po_explain_plurals.Rd |only potools-0.2.4/potools/man/po_extract.Rd |only potools-0.2.4/potools/man/po_update.Rd |only potools-0.2.4/potools/man/potools-package.Rd |only potools-0.2.4/potools/man/translate_package.Rd | 388 +++++--- potools-0.2.4/potools/man/write_po_file.Rd | 155 ++- potools-0.2.4/potools/po |only potools-0.2.4/potools/tests/testthat.R | 2 potools-0.2.4/potools/tests/testthat/_snaps |only potools-0.2.4/potools/tests/testthat/helpers.R | 22 potools-0.2.4/potools/tests/testthat/mock_translations/test-translate-package-r_msg-2.input | 1 potools-0.2.4/potools/tests/testthat/test-diagnostics.R | 22 potools-0.2.4/potools/tests/testthat/test-get-message-data.R | 8 potools-0.2.4/potools/tests/testthat/test-po_compile.R |only potools-0.2.4/potools/tests/testthat/test-po_create.R |only potools-0.2.4/potools/tests/testthat/test-po_explain_plurals.R |only potools-0.2.4/potools/tests/testthat/test-po_update.R |only potools-0.2.4/potools/tests/testthat/test-translate-package.R | 18 potools-0.2.4/potools/tests/testthat/test-write-po-file.R | 2 potools-0.2.4/potools/tests/testthat/test_packages/r_non_template/R/foo.R | 3 potools-0.2.4/potools/vignettes/GreatSpelling/R/spellman.R | 3 potools-0.2.4/potools/vignettes/custom-diagnostic.Rmd | 19 potools-0.2.4/potools/vignettes/developers.Rmd |only potools-0.2.4/potools/vignettes/translators.Rmd |only 72 files changed, 2192 insertions(+), 858 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages.
These include e.g. measures like r-squared, intraclass correlation
coefficient (Nakagawa, Johnson & Schielzeth (2017)
<doi:10.1098/rsif.2017.0213>), root mean squared error or functions to
check models for overdispersion, singularity or zero-inflation and
more. Functions apply to a large variety of regression models,
including generalized linear models, mixed effects models and Bayesian
models. References: Lüdecke et al. (2021) <doi:10.21105/joss.03139>.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [ctb] ,
Remi Theriault [ctb] ,
Martin Jullum [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between performance versions 0.10.7 dated 2023-10-27 and 0.10.8 dated 2023-10-30
DESCRIPTION | 6 - MD5 | 26 ++--- NEWS.md | 16 +++ R/binned_residuals.R | 12 ++ R/check_model.R | 2 R/check_predictions.R | 40 +++++---- R/looic.R | 2 R/r2_bayes.R | 142 +++++++++++++++----------------- man/binned_residuals.Rd | 3 man/looic.Rd | 2 man/r2_bayes.Rd | 110 ++++++++++++------------ tests/testthat/test-binned_residuals.R | 20 ++++ tests/testthat/test-check_predictions.R | 50 +++++++++++ tests/testthat/test-logLik.R | 2 14 files changed, 270 insertions(+), 163 deletions(-)
Title: Probabilistic Models to Analyze and Gaussianize Heavy-Tailed,
Skewed Data
Description: Lambert W x F distributions are a generalized framework to analyze
skewed, heavy-tailed data. It is based on an input/output system, where the
output random variable (RV) Y is a non-linearly transformed version of an input
RV X ~ F with similar properties as X, but slightly skewed (heavy-tailed).
The transformed RV Y has a Lambert W x F distribution. This package contains
functions to model and analyze skewed, heavy-tailed data the Lambert Way:
simulate random samples, estimate parameters, compute quantiles, and plot/
print results nicely. The most useful function is 'Gaussianize',
which works similarly to 'scale', but actually makes the data Gaussian.
A do-it-yourself toolkit allows users to define their own Lambert W x
'MyFavoriteDistribution' and use it in their analysis right away.
Author: Georg M. Goerg [aut, cre]
Maintainer: Georg M. Goerg <im@gmge.org>
Diff between LambertW versions 0.6.8 dated 2023-09-03 and 0.6.9 dated 2023-10-30
DESCRIPTION | 6 ++--- MD5 | 40 +++++++++++++++++++-------------------- NEWS.md | 8 +++++++ R/beta2tau.R | 12 ++++++++++- R/check_beta.R | 30 ++++++++++++++++++++++++++++- R/dU.R | 5 ++++ R/deprecated_functions.R | 32 +++++++++++++++---------------- R/get_beta_names.R | 3 +- R/get_distnames.R | 4 ++- R/loglik_input.R | 5 ++++ R/pU.R | 3 ++ R/print.LambertW_fit.R | 6 ++--- R/print.summary.LambertW_fit.R | 12 +++++------ R/qU.R | 4 +++ R/rU.R | 5 +++- R/theta2unbounded.R | 6 ++--- R/zzz.R | 9 ++++++-- README.md | 3 ++ man/deprecated-functions.Rd | 4 +-- man/theta-utils.Rd | 4 +-- tests/testthat/test_beta-utils.R | 3 +- 21 files changed, 141 insertions(+), 63 deletions(-)
Title: Download Map Data from GISCO API - Eurostat
Description: Tools to download data from the GISCO (Geographic Information
System of the Commission) Eurostat database
<https://ec.europa.eu/eurostat/web/gisco>. Global and European map
data available. This package is in no way officially related to or
endorsed by Eurostat.
Author: Diego Hernangomez [aut, cre, cph]
,
EuroGeographics [cph] ,
Vincent Arel-Bundock [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between giscoR versions 0.3.5 dated 2023-06-30 and 0.4.0 dated 2023-10-30
DESCRIPTION | 11 - MD5 | 89 ++++++------ NEWS.md | 203 ++++++++++++++--------------- R/data.R | 135 ++++++++++++------- R/gisco_bulk_download.R | 25 +-- R/gisco_cache.R | 6 R/gisco_get_airports.R | 6 R/gisco_get_grid.R | 11 + R/gisco_get_healthcare.R | 161 ++++++++++------------- R/gisco_get_nuts.R | 22 ++- R/gisco_get_postalcodes.R | 7 - R/utils_downloads.R | 51 +++++-- R/utils_names.R | 6 README.md | 18 +- build/vignette.rds |binary data/gisco_coastallines.rda |binary data/gisco_countries.rda |binary data/gisco_countrycode.rda |binary data/gisco_db.rda |binary data/gisco_nuts.rda |binary data/tgs00026.rda |binary inst/CITATION | 8 - inst/WORDLIST | 16 -- inst/doc/giscoR.Rmd | 17 +- inst/doc/giscoR.html | 13 + inst/schemaorg.json |only man/gisco_coastallines.Rd | 11 - man/gisco_countries.Rd | 21 +-- man/gisco_countrycode.Rd | 39 ++--- man/gisco_get_airports.Rd | 2 man/gisco_get_healthcare.Rd | 26 --- man/gisco_get_nuts.Rd | 9 + man/gisco_nuts.Rd | 58 ++++++-- man/tgs00026.Rd | 8 - tests/testthat/test-gisco_attributions.R | 52 +++---- tests/testthat/test-gisco_bulk_download.R | 2 tests/testthat/test-gisco_get_communes.R | 8 - tests/testthat/test-gisco_get_countries.R | 7 - tests/testthat/test-gisco_get_grid.R | 10 - tests/testthat/test-gisco_get_healthcare.R | 1 tests/testthat/test-gisco_get_nuts.R | 53 ++++++- tests/testthat/test-utils.R | 162 +++++++++++------------ vignettes/africa-1.png |binary vignettes/country-1.png |binary vignettes/giscoR-1.png |binary vignettes/giscoR.Rmd | 17 +- 46 files changed, 700 insertions(+), 591 deletions(-)
Title: 'DataSHIELD' Client for 'MOLGENIS Armadillo'
Description: 'DataSHIELD' is an infrastructure and series of R packages that
enables the remote and 'non-disclosive' analysis of sensitive research data.
This package is the 'DataSHIELD' interface implementation to analyze data
shared on a 'MOLGENIS Armadillo' server. 'MOLGENIS Armadillo' is a
light-weight 'DataSHIELD' server using a file store and an 'RServe' server.
Author: Mariska Slofstra [aut, cre] ,
Sido Haakma [aut] ,
Tommy de Boer [aut] ,
Fleur Kelpin [aut] ,
MOLGENIS org [cph, fnd]
Maintainer: Mariska Slofstra <m.k.slofstra@umcg.nl>
Diff between DSMolgenisArmadillo versions 2.0.0 dated 2023-02-24 and 2.0.5 dated 2023-10-30
DESCRIPTION | 6 MD5 | 44 - NEWS.md | 4 R/ArmadilloConnection.R | 10 R/ArmadilloResult.R | 2 R/utils.R | 10 inst/doc/DSMolgenisArmadillo.Rmd | 195 +++--- inst/doc/DSMolgenisArmadillo.html | 237 +++---- inst/doc/development.Rmd | 894 ++++++++++++++++++++------- inst/doc/development.html | 969 ++++++++++++++++++++++-------- inst/doc/workspaces.Rmd | 46 - inst/doc/workspaces.html | 107 ++- man/dsGetInfo-ArmadilloResult-method.Rd | 2 tests/testthat/test-ArmadilloConnection.R | 4 tests/testthat/test-ArmadilloDriver.R | 36 - tests/testthat/test-ArmadilloResult.R | 10 tests/testthat/test-utils.R | 28 vignettes/DSMolgenisArmadillo.Rmd | 195 +++--- vignettes/DSMolgenisArmadillo.Rmd.orig | 37 - vignettes/development.Rmd | 894 ++++++++++++++++++++------- vignettes/development.Rmd.orig | 24 vignettes/workspaces.Rmd | 46 - vignettes/workspaces.Rmd.orig | 8 23 files changed, 2653 insertions(+), 1155 deletions(-)
More information about DSMolgenisArmadillo at CRAN
Permanent link
Title: Add Continuous Legends to Plots
Description: Annotate plots with legends for continuous variables and colour
spectra using the base graphics plotting tools; and manipulate irregular
polygons.
Author: Martin R. Smith [aut, cre, cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between PlotTools versions 0.2.1 dated 2023-09-28 and 0.3.0 dated 2023-10-30
DESCRIPTION | 6 - MD5 | 17 +-- NAMESPACE | 3 NEWS.md | 7 + R/Col2Hex.R |only R/SpectrumLegend.R | 3 man/Col2Hex.Rd |only man/SpectrumLegend.Rd | 2 tests/testthat/test-Col2Hex.R |only tests/testthat/test-Polygons.R | 1 tests/testthat/test-SpectrumLegend.R | 180 +++++++++++++++++------------------ 11 files changed, 116 insertions(+), 103 deletions(-)
Title: 'DT' Extension for CRUD (Create, Read, Update, Delete)
Applications in 'shiny'
Description: The core of this package is a function eDT() which enhances DT::datatable() such that it can be used to interactively modify data in 'shiny'. By the use of generic 'dplyr' methods it supports many types of data storage, with relational databases ('dbplyr') being the main use case.
Author: Jasper Schelfhout [aut, cre],
Maxim Nazarov [rev],
Daan Seynaeve [rev]
Maintainer: Jasper Schelfhout <jasper.schelfhout@openanalytics.eu>
Diff between editbl versions 1.0.1 dated 2023-10-13 and 1.0.2 dated 2023-10-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/tbl_dbi.R | 25 ++++++++++++++++++++++--- README.md | 37 ++++++++++++++----------------------- inst/NEWS | 4 ++++ 5 files changed, 48 insertions(+), 34 deletions(-)
Title: Generating Various Numerical Representation Schemes for Protein
Sequences
Description: Comprehensive toolkit for generating various numerical
features of protein sequences described in Xiao et al. (2015)
<DOI:10.1093/bioinformatics/btv042>. For full functionality,
the software 'ncbi-blast+' is needed, see
<https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html>
for more information.
Author: Nan Xiao [aut, cre] ,
Qing-Song Xu [aut],
Dong-Sheng Cao [aut],
Sebastian Mueller [ctb]
Maintainer: Nan Xiao <me@nanx.me>
Diff between protr versions 1.6-3 dated 2023-03-05 and 1.7-0 dated 2023-10-30
DESCRIPTION | 24 ++-- MD5 | 51 ++++----- NAMESPACE | 1 NEWS.md | 7 + R/desc-15-PSSM.R | 2 R/desc-15-PSSMAcc.R | 4 R/misc-02-readPDB.R | 2 R/misc-06-acc.R | 4 R/par-01-parSeqSim.R | 283 ++++++++++++++++++++++++++++++++++---------------- R/protr-datalist.R | 14 +- README.md | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/protr.R | 94 ++++++++-------- inst/doc/protr.Rmd | 26 ++-- inst/doc/protr.html | 31 ++--- man/AAMetaInfo.Rd | 14 +- man/acc.Rd | 4 man/crossSetSim.Rd |only man/extractPSSM.Rd | 2 man/extractPSSMAcc.Rd | 4 man/parSeqSim.Rd | 6 - man/parSeqSimDisk.Rd | 6 - man/protr-package.Rd | 7 + man/readPDB.Rd | 2 man/twoSeqSim.Rd | 6 - vignettes/protr.Rmd | 26 ++-- 27 files changed, 378 insertions(+), 243 deletions(-)
Title: Root Mean Square Curvature Calculation
Description: Calculates the RMS intrinsic and parameter-effects curvatures of a nonlinear regression model. The curvatures are global measures of assessing whether a model/data set combination is close-to-linear or not. See Bates and Watts (1980) <doi:10.1002/9780470316757> and Ratkowsky and Reddy (2017) <doi:10.1093/aesa/saw098> for details.
Author: Peijian Shi [aut, cre],
Peter M. Ridland [aut],
David A. Ratkowsky [aut],
Yang Li [aut]
Maintainer: Peijian Shi <pjshi@njfu.edu.cn>
Diff between IPEC versions 1.0.4 dated 2023-08-22 and 1.0.5 dated 2023-10-30
DESCRIPTION | 8 ++--- MD5 | 10 +++--- R/biasIPEC.R | 86 +++++++++++++++++++++++++++++++++++------------------- R/curvIPEC.R | 3 + build/partial.rdb |binary man/biasIPEC.Rd | 2 - 6 files changed, 69 insertions(+), 40 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-04 1.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-31 0.4.1
2022-07-14 0.3.0
2022-06-21 0.2.2
2022-04-08 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-29 0.1.3
2020-01-13 0.1.2
2018-07-10 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-18 1.2.6
Title: GCC Estimation of the Multilevel Factor Model
Description: Provides methods for model selection, estimation, bootstrap inference, and simulation for the
multilevel factor model, based on the principal component estimation and generalised
canonical correlation approach. Details can be found in "Generalised Canonical Correlation
Estimation of the Multilevel Factor Model." Lin and Shin (2023) <doi:10.2139/ssrn.4295429>.
Author: Rui Lin [aut, cre],
Yongcheol Shin [aut]
Maintainer: Rui Lin <ruilin1081@gmail.com>
Diff between GCCfactor versions 1.0 dated 2023-10-13 and 1.0.1 dated 2023-10-30
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/utility_functions.R | 3 +++ 3 files changed, 8 insertions(+), 5 deletions(-)
Title: Tail Classifier
Description: The function TailClassifier() suggests one of the following types of tail for your discrete data: 1) Power decaying tail; 2) Sub-exponential decaying tail; and 3) Near-exponential decaying tail. The function also provides an estimate of the parameter for the classified-distribution as a reference.
Author: Jialin Zhang
Maintainer: Jialin Zhang (JZ) <jzhang@math.msstate.edu>
Diff between TailClassifier versions 0.1.0 dated 2021-06-17 and 0.1.1 dated 2023-10-30
TailClassifier-0.1.0/TailClassifier/inst |only TailClassifier-0.1.1/TailClassifier/DESCRIPTION | 17 TailClassifier-0.1.1/TailClassifier/MD5 | 9 TailClassifier-0.1.1/TailClassifier/NAMESPACE | 8 TailClassifier-0.1.1/TailClassifier/R/TailClassifier.r | 362 +++++++++++--- TailClassifier-0.1.1/TailClassifier/man/TailClassifier.Rd | 96 +++ 6 files changed, 395 insertions(+), 97 deletions(-)
More information about TailClassifier at CRAN
Permanent link
Title: Extra String Manipulation Functions
Description: There are some things that I wish were easier with the
'stringr' or 'stringi' packages. The foremost of these is the
extraction of numbers from strings. 'stringr' and 'stringi' make you
figure out the regular expression for yourself; 'strex' takes care of
this for you. There are many other handy functionalities in 'strex'.
Contributions to this package are encouraged: it is intended as a
miscellany of string manipulation functions that cannot be found in
'stringi' or 'stringr'.
Author: Rory Nolan [aut, cre]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between strex versions 1.6.0 dated 2023-01-21 and 1.6.1 dated 2023-10-30
DESCRIPTION | 6 MD5 | 20 - NEWS.md | 6 R/detect.R | 2 inst/doc/alphordering-numbers.html | 60 ++--- inst/doc/argument-matching.html | 140 ++++++------- inst/doc/before-and-after.html | 74 +++--- inst/doc/detection.html | 85 +++---- inst/doc/important-miscellany.html | 166 +++++++-------- inst/doc/numbers-in-strings.html | 396 ++++++++++++++++++------------------- man/str_detect_all.Rd | 2 11 files changed, 481 insertions(+), 476 deletions(-)