Title: Automatic Detection of Experimental Unit in Precision
Agriculture
Description: A part of precision agriculture is linked to the spectral image obtained from the cameras. With the image information of the agricultural experiment, the included functions facilitate the collection of spectral data associated with the experimental units. Some designs generated in R are linked to the images, which allows the use of the information of each pixel of the image in the experimental unit and the treatment. Tables and images are generated for the analysis of the precision agriculture experiment during the entire vegetative period of the crop.
Author: Felipe de Mendiburu [aut, cre],
David Mauricio [aut],
Rodrigo Morales [aut],
Roberto Quiroz [aut]
Maintainer: Felipe de Mendiburu <fmendiburu@lamolina.edu.pe>
Diff between rPAex versions 1.0.4 dated 2023-10-22 and 1.0.5 dated 2023-11-01
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS | 4 ++++ inst/NEWS.Rd | 6 ++++++ man/EUsPoint.Rd | 3 ++- man/borderPoint.Rd | 31 +++++++++++++++++++++---------- man/cassava.Rd | 6 ++++-- man/cropTime.Rd | 4 ++-- man/designRaster.Rd | 8 ++++---- man/fixedPoint.Rd | 6 +++--- man/fourPoint.Rd | 18 ++++++++++-------- man/imageField.Rd | 14 ++++++-------- man/movePlot.Rd | 21 ++++++++++++--------- man/rPAex-package.Rd | 28 ++++++++++++++-------------- 14 files changed, 105 insertions(+), 78 deletions(-)
Title: Gene Locus Plot with Gene Annotations
Description: Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics system, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.
Author: Myles Lewis [aut, cre]
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
Diff between locuszoomr versions 0.1.1 dated 2023-11-01 and 0.1.2 dated 2023-11-01
DESCRIPTION | 13 ++++++----- MD5 | 52 +++++++++++++++++++++++------------------------ NEWS.md | 4 +-- R/genetrack_ly.R | 3 +- R/genetracks.R | 3 +- R/gg_addgenes.R | 2 + R/gg_genetracks.R | 2 + R/gg_scatter.R | 2 + R/locus.R | 2 + R/locus_ggplot.R | 2 + R/locus_plot.R | 2 + R/locus_plotly.R | 3 +- R/multi_layout.R | 2 + README.md | 15 +++++++------ build/vignette.rds |binary inst/doc/locuszoomr.Rmd | 1 man/genetrack_ly.Rd | 3 +- man/genetracks.Rd | 3 +- man/gg_addgenes.Rd | 2 + man/gg_genetracks.Rd | 2 + man/gg_scatter.Rd | 2 + man/locus.Rd | 2 + man/locus_ggplot.Rd | 2 + man/locus_plot.Rd | 2 + man/locus_plotly.Rd | 3 +- man/multi_layout.Rd | 2 + vignettes/locuszoomr.Rmd | 1 27 files changed, 85 insertions(+), 47 deletions(-)
Title: Spectral Data for Light-Emitting-Diodes
Description: Spectral emission data for some frequently used light emitting
diodes available as electronic components. Part of the 'r4photobiology'
suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Shafiuddin Ahmed [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyLEDs versions 0.5.1 dated 2022-08-15 and 0.5.2 dated 2023-11-01
photobiologyLEDs-0.5.1/photobiologyLEDs/inst/doc/r4p-introduction.Rmd |only photobiologyLEDs-0.5.1/photobiologyLEDs/inst/doc/r4p-introduction.html |only photobiologyLEDs-0.5.1/photobiologyLEDs/inst/doc/user-guide.R |only photobiologyLEDs-0.5.1/photobiologyLEDs/inst/doc/user-guide.Rmd |only photobiologyLEDs-0.5.1/photobiologyLEDs/inst/doc/user-guide.html |only photobiologyLEDs-0.5.1/photobiologyLEDs/vignettes/r4p-introduction.Rmd |only photobiologyLEDs-0.5.1/photobiologyLEDs/vignettes/user-guide.Rmd |only photobiologyLEDs-0.5.2/photobiologyLEDs/DESCRIPTION | 12 photobiologyLEDs-0.5.2/photobiologyLEDs/MD5 | 55 +-- photobiologyLEDs-0.5.2/photobiologyLEDs/NAMESPACE | 6 photobiologyLEDs-0.5.2/photobiologyLEDs/NEWS.md | 9 photobiologyLEDs-0.5.2/photobiologyLEDs/R/cob-dimming-mspct.r | 11 photobiologyLEDs-0.5.2/photobiologyLEDs/R/led_brands.r | 4 photobiologyLEDs-0.5.2/photobiologyLEDs/R/photobiologyLEDs.r | 6 photobiologyLEDs-0.5.2/photobiologyLEDs/README.md | 107 ++++--- photobiologyLEDs-0.5.2/photobiologyLEDs/build/partial.rdb |binary photobiologyLEDs-0.5.2/photobiologyLEDs/build/vignette.rds |binary photobiologyLEDs-0.5.2/photobiologyLEDs/data/COB-dimming-mspct.rda |binary photobiologyLEDs-0.5.2/photobiologyLEDs/data/COB-reflectors-mspct.rda |binary photobiologyLEDs-0.5.2/photobiologyLEDs/data/leds-mspct.rda |binary photobiologyLEDs-0.5.2/photobiologyLEDs/inst/CITATION | 13 photobiologyLEDs-0.5.2/photobiologyLEDs/inst/doc/userguide-0-r4p-introduction.R |only photobiologyLEDs-0.5.2/photobiologyLEDs/inst/doc/userguide-0-r4p-introduction.Rmd |only photobiologyLEDs-0.5.2/photobiologyLEDs/inst/doc/userguide-0-r4p-introduction.html |only photobiologyLEDs-0.5.2/photobiologyLEDs/inst/doc/userguide-1-data-use.R |only photobiologyLEDs-0.5.2/photobiologyLEDs/inst/doc/userguide-1-data-use.Rmd |only photobiologyLEDs-0.5.2/photobiologyLEDs/inst/doc/userguide-1-data-use.html |only photobiologyLEDs-0.5.2/photobiologyLEDs/man/COB_dimming.mspct.Rd | 148 +++++----- photobiologyLEDs-0.5.2/photobiologyLEDs/man/COB_reflectors.mspct.Rd | 146 ++++----- photobiologyLEDs-0.5.2/photobiologyLEDs/man/figures/README-unnamed-chunk-1-1.png |binary photobiologyLEDs-0.5.2/photobiologyLEDs/man/led_brands.Rd | 6 photobiologyLEDs-0.5.2/photobiologyLEDs/man/led_colors.Rd | 18 - photobiologyLEDs-0.5.2/photobiologyLEDs/man/led_uses.Rd | 136 ++++----- photobiologyLEDs-0.5.2/photobiologyLEDs/man/photobiologyLEDs-package.Rd | 6 photobiologyLEDs-0.5.2/photobiologyLEDs/vignettes/userguide-0-r4p-introduction.Rmd |only photobiologyLEDs-0.5.2/photobiologyLEDs/vignettes/userguide-1-data-use.Rmd |only 36 files changed, 364 insertions(+), 319 deletions(-)
More information about photobiologyLEDs at CRAN
Permanent link
Title: Install R Packages or Download File from GitHub via the Proxy
Site
Description: When you want to install R package or download file from GitHub,
but you can't access GitHub, this package helps you install R packages or
download file from GitHub via the proxy website <https://ghproxy.com/> or
<https://gh-proxy.com/>, which is in real-time sync with GitHub.
Author: Xinyuan Chu [aut, cre]
Maintainer: Xinyuan Chu <chuxinyuan@outlook.com>
Diff between ipkg versions 1.0.9 dated 2023-10-07 and 1.1.0 dated 2023-11-01
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/download_file.R | 54 ++++++++++++++++++++++++++++++++++-------------------- README.md | 2 +- 4 files changed, 42 insertions(+), 28 deletions(-)
Title: Call 'EPANET' Functions to Simulate Pipe Networks
Description: Enables simulation of water piping networks using 'EPANET'.
The package provides functions from the 'EPANET' programmer's toolkit as R
functions so that basic or customized simulations can be carried out from R.
The package uses 'EPANET' version 2.2 from Open Water Analytics
<https://github.com/OpenWaterAnalytics/EPANET/releases/tag/v2.2>.
Author: Ernesto Arandia [aut],
Bradley Eck [aut, cre],
Lew Rossman [aut],
Michael Tryby [ctb],
Sam Hatchett [ctb],
Feng Shang [ctb],
James Uber [ctb],
Tom Taxon [ctb],
Hyoungmin Woo [ctb],
Jinduan Chen [ctb],
Yunier Soad [ctb],
Mike Kane [ctb],
Demetrios Eli [...truncated...]
Maintainer: Bradley Eck <brad@bradeck.net>
Diff between epanet2toolkit versions 0.7.0 dated 2023-02-09 and 1.0.0 dated 2023-11-01
DESCRIPTION | 10 MD5 | 151 +++++++-- NAMESPACE | 124 +++++++ R/Rtoolkit.R | 5 R/codes.r | 17 - R/controls.r | 39 ++ R/curves.r |only R/demand.r |only R/enums.r |only R/epanet.r | 31 + R/epanet2toolkit.r | 1 R/hydraulics.r | 47 ++ R/links22.r |only R/nodes.r | 89 +++++ R/options.r | 17 + R/patterns.r | 66 ++++ R/pumps.r |only R/report.r | 144 +++++++++ R/rules.r |only R/title.r |only R/util.r | 24 + README.md | 12 man/ENaddcontrol.Rd |only man/ENaddcurve.Rd |only man/ENadddemand.Rd |only man/ENaddlink.Rd |only man/ENaddnode.Rd |only man/ENaddpattern.Rd |only man/ENaddrule.Rd |only man/ENclearreport.Rd |only man/ENcopyreport.Rd |only man/ENdeletecontrol.Rd |only man/ENdeletecurve.Rd |only man/ENdeletedemand.Rd |only man/ENdeletelink.Rd |only man/ENdeletenode.Rd |only man/ENdeletepattern.Rd |only man/ENdeleterule.Rd |only man/ENgetaveragepatternvalue.Rd |only man/ENgetbasedemand.Rd |only man/ENgetcount.Rd | 3 man/ENgetcurveid.Rd |only man/ENgetcurveindex.Rd |only man/ENgetcurvelen.Rd |only man/ENgetcurvetype.Rd |only man/ENgetcurvevalue.Rd |only man/ENgetdemandindex.Rd |only man/ENgetdemandmodel.Rd |only man/ENgetdemandname.Rd |only man/ENgetdemandpattern.Rd |only man/ENgetelseaction.Rd |only man/ENgeterror.Rd |only man/ENgetheadcurveindex.Rd |only man/ENgetnumdemands.Rd |only man/ENgetpremise.Rd |only man/ENgetpumptype.Rd |only man/ENgetresultindex.Rd |only man/ENgetrule.Rd |only man/ENgetruleID.Rd |only man/ENgetstatistic.Rd |only man/ENgetthenaction.Rd |only man/ENgettitle.Rd |only man/ENgetvertex.Rd |only man/ENgetvertexcount.Rd |only man/ENinit.Rd |only man/ENresetreport.Rd |only man/ENsavehydfile.Rd |only man/ENsetbasedemand.Rd |only man/ENsetcurveid.Rd |only man/ENsetcurvevalue.Rd |only man/ENsetdemandmodel.Rd |only man/ENsetdemandname.Rd |only man/ENsetdemandpattern.Rd |only man/ENsetelseaction.Rd |only man/ENsetflowunits.Rd |only man/ENsetheadcurveindex.Rd |only man/ENsetjuncdata.Rd |only man/ENsetlinkid.Rd |only man/ENsetlinknodes.Rd |only man/ENsetlinktype.Rd |only man/ENsetnodeid.Rd |only man/ENsetpatternid.Rd |only man/ENsetpremise.Rd |only man/ENsetpremiseindex.Rd |only man/ENsetpremisestatus.Rd |only man/ENsetpremisevalue.Rd |only man/ENsetreport.Rd |only man/ENsetrulepriority.Rd |only man/ENsetstatusreport.Rd |only man/ENsettankdata.Rd |only man/ENsetthenaction.Rd |only man/ENsetvertices.Rd |only man/ENusehydfile.Rd |only man/epanet2toolkit.Rd | 1 src/Repanet2.c | 590 +++++++++++++++++++++++++++++++++++++ src/Repanet2.h | 97 ++++++ src/init.c | 74 ++++ tests/testthat/Net1-getrules.rpt |only tests/testthat/Net1-indexcheck.rpt |only tests/testthat/Net1-ld.rpt |only tests/testthat/Net1-rt.bin |only tests/testthat/Net1.rpt |only tests/testthat/Net2.rpt |only tests/testthat/Net3.bin |only tests/testthat/Net3.rpt |only tests/testthat/test_ENclose.r | 4 tests/testthat/test_ENopen.r | 6 tests/testthat/test_controls.R | 22 + tests/testthat/test_curves.r |only tests/testthat/test_demand.r |only tests/testthat/test_epanet.r | 14 tests/testthat/test_flowunits.r | 2 tests/testthat/test_hydraulics.r | 44 ++ tests/testthat/test_links22.r |only tests/testthat/test_nodes.r | 82 +++++ tests/testthat/test_options.r | 13 tests/testthat/test_patterns.r | 42 ++ tests/testthat/test_pumps.r |only tests/testthat/test_report.r | 177 +++++++++++ tests/testthat/test_rules.r |only tests/testthat/test_title.r |only tests/testthat/test_util.r | 7 122 files changed, 1891 insertions(+), 64 deletions(-)
More information about epanet2toolkit at CRAN
Permanent link
Title: "Eating the Liver of Data Science"
Description: Offers a suite of helper functions to simplify various data science techniques for non-experts. This package aims to enable individuals with only a minimal level of coding knowledge to become acquainted with these techniques in an accessible manner. Inspired by an ancient Persian idiom, we liken this process to "eating the liver of data science," suggesting a deep and intimate engagement with the field of data science. This package includes functions for tasks such as data partitioning for out-of-sample testing, calculating Mean Squared Error (MSE) to assess prediction accuracy, and data transformations (z-score and min-max). In addition to these helper functions, the 'liver' package also features several intriguing datasets valuable for multivariate analysis.
Author: Reza Mohammadi [aut, cre] ,
Kevin Burke [aut]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between liver versions 1.14 dated 2023-04-11 and 1.15 dated 2023-11-01
DESCRIPTION | 8 +++--- MD5 | 52 +++++++++++++++++++++++--------------------- NEWS.md | 4 +++ R/find.na.R | 3 +- R/kNN.R | 12 +++++++--- R/minmax.R | 6 ++--- README.md | 2 - build/vignette.rds |binary data/adult.RData |binary data/advertising.RData |binary data/bank.RData |binary data/cereal.RData |binary data/churn.RData |binary data/churnCredit.RData |binary data/churnTel.RData |binary data/corona.RData |binary data/datalist | 2 + data/fertilizer.RData |binary data/house.RData |binary data/housePrice.RData |binary data/insurance.RData |binary data/marketing.RData |binary data/redWines.RData |only data/risk.RData |binary data/whiteWines.RData |only inst/doc/liver-example.html | 19 +++++----------- man/liver-package.Rd | 3 +- man/redWines.Rd |only man/whiteWines.Rd |only 29 files changed, 61 insertions(+), 50 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-16 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-25 0.4.7
2014-11-25 0.4.6
2011-05-03 0.4.5
2009-08-24 0.4.4
2009-08-20 0.4.3
2008-07-20 0.4.2
2008-06-09 0.4.1
2008-06-08 0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-27 1.0.4
2015-10-31 1.0.3
2015-10-29 1.0.1
2015-10-29 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-04 1.0.0
2017-02-12 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-23 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-19 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-04 1.2.7
Title: Analyze and Visualize Data from 'Microsoft Viva Insights'
Description: Provides a versatile range of functions, including exploratory data analysis, time-series analysis, organizational network analysis, and data validation, whilst at the same time implements a set of best practices in analyzing and visualizing data specific to 'Microsoft Viva Insights'.
Author: Martin Chan [aut, cre],
Carlos Morales [aut]
Maintainer: Martin Chan <martin.chan@microsoft.com>
Diff between vivainsights versions 0.4.2 dated 2023-10-17 and 0.4.3 dated 2023-11-01
DESCRIPTION | 9 +++-- MD5 | 26 +++++++++------- NEWS.md | 5 +++ R/g2g_data.R | 13 +++++--- R/network_g2g.R | 7 +--- R/network_p2p.R | 8 ++--- R/p2p_data.R | 6 +++ data/g2g_data.rda |binary data/p2p_data.rda |binary man/any_idate.Rd | 82 ++++++++++++++++++++++++++--------------------------- man/g2g_data.Rd | 13 +++++--- man/network_g2g.Rd | 7 +--- man/p2p_data.Rd | 6 +++ tests |only 14 files changed, 103 insertions(+), 79 deletions(-)
Title: UK Flood Estimation
Description: Functions to implement the methods of the Flood Estimation Handbook (FEH), associated updates and the revitalised flood hydrograph model (ReFH). Currently the package uses NRFA peak flow dataset version 12. Aside from FEH functionality, further hydrological functions are available. Most of the methods implemented in this package are described in one or more of the following: "Flood Estimation Handbook", Centre for Ecology & Hydrology (1999, ISBN:0 948540 94 X). "Flood Estimation Handbook Supplementary Report No. 1", Kjeldsen (2007, ISBN:0 903741 15 7). "Regional Frequency Analysis - an approach based on L-moments", Hosking & Wallis (1997, ISBN: 978 0 521 01940 8). "Proposal of the extreme rank plot for extreme value analysis: with an emphasis on flood frequency studies", Hammond (2019, <doi:10.2166/nh.2019.157>). "Making better use of local data in flood frequency estimation", Environment Agency (2017, ISBN: 978 1 84911 387 8). "Sampling uncertainty of UK design flood est [...truncated...]
Author: Anthony Hammond
Maintainer: Anthony Hammond <agqhammond@gmail.com>
Diff between UKFE versions 0.3.0 dated 2023-09-23 and 0.3.1 dated 2023-11-01
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/All.R | 36 ++++++++++++++++++++++++++---------- man/AMextract.Rd | 2 +- man/DDF.Rd | 2 +- man/NonFloodAdjPool.Rd | 10 +++++++--- 6 files changed, 43 insertions(+), 23 deletions(-)
Title: Functions to Help in your Coding Etiquette
Description: Adds some functions to help in your coding etiquette.
'tinycodet' primarily focuses on 4 aspects.
1) Safer decimal (in)equality testing, safer atomic conversions, and other functions for safer coding.
2) A new package import system,
that attempts to combine the benefits of using a package without attaching,
with the benefits of attaching a package.
3) Extending the string manipulation capabilities of the 'stringi' R package.
4) Reducing repetitive code.
'tinycodet' has only one dependency, namely 'stringi'.
Author: Tony Wilkes [aut, cre, cph]
Maintainer: Tony Wilkes <tony_a_wilkes@outlook.com>
Diff between tinycodet versions 0.1.0.6 dated 2023-10-12 and 0.2 dated 2023-11-01
tinycodet-0.1.0.6/tinycodet/man/tinycodet_dry.Rd |only tinycodet-0.1.0.6/tinycodet/man/tinycodet_help.Rd |only tinycodet-0.1.0.6/tinycodet/man/tinycodet_import.Rd |only tinycodet-0.1.0.6/tinycodet/man/tinycodet_misc.Rd |only tinycodet-0.1.0.6/tinycodet/man/tinycodet_safer.Rd |only tinycodet-0.1.0.6/tinycodet/man/tinycodet_strings.Rd |only tinycodet-0.2/tinycodet/DESCRIPTION | 12 ++--- tinycodet-0.2/tinycodet/MD5 | 38 +++++++++--------- tinycodet-0.2/tinycodet/NEWS.md | 8 +++ tinycodet-0.2/tinycodet/R/pkgs.R | 1 tinycodet-0.2/tinycodet/R/str_truth.R | 2 tinycodet-0.2/tinycodet/R/tinycodet_dry.R | 7 +-- tinycodet-0.2/tinycodet/R/tinycodet_help.R | 10 ++-- tinycodet-0.2/tinycodet/R/tinycodet_import.R | 23 ++++++++-- tinycodet-0.2/tinycodet/R/tinycodet_misc.R | 5 +- tinycodet-0.2/tinycodet/R/tinycodet_safer.R | 5 +- tinycodet-0.2/tinycodet/R/tinycodet_strings.R | 5 +- tinycodet-0.2/tinycodet/build/partial.rdb |binary tinycodet-0.2/tinycodet/man/aaa0_tinycodet_help.Rd |only tinycodet-0.2/tinycodet/man/aaa1_tinycodet_safer.Rd |only tinycodet-0.2/tinycodet/man/aaa2_tinycodet_import.Rd |only tinycodet-0.2/tinycodet/man/aaa3_tinycodet_strings.Rd |only tinycodet-0.2/tinycodet/man/aaa4_tinycodet_dry.Rd |only tinycodet-0.2/tinycodet/man/aaa5_tinycodet_misc.Rd |only tinycodet-0.2/tinycodet/man/pkgs.Rd | 3 - tinycodet-0.2/tinycodet/man/str_truth.Rd | 3 - 26 files changed, 74 insertions(+), 48 deletions(-)
Title: Display and Analyze ROC Curves
Description: Tools for visualizing, smoothing and comparing receiver operating characteristic (ROC curves). (Partial) area under the curve (AUC) can be compared with statistical tests based on U-statistics or bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.
Author: Xavier Robin [cre, aut] ,
Natacha Turck [aut],
Alexandre Hainard [aut],
Natalia Tiberti [aut],
Frederique Lisacek [aut],
Jean-Charles Sanchez [aut],
Markus Mueller [aut],
Stefan Siegert [ctb] ,
Matthias Doering [ctb] ,
Zane Billings [ctb]
Maintainer: Xavier Robin <pROC-cran@xavier.robin.name>
Diff between pROC versions 1.18.4 dated 2023-07-05 and 1.18.5 dated 2023-11-01
DESCRIPTION | 10 ++-- MD5 | 22 +++++---- NEWS | 9 ++- R/ggroc.R | 8 ++- R/roc.utils.R | 47 ++++++++++++++++--- README.md | 2 build/partial.rdb |binary man/ggroc.Rd | 12 +---- tests/testthat/_snaps/ggroc/ggroc-list-colour.svg |only tests/testthat/test-ggroc.R | 7 ++ tests/testthat/test-print.R | 1 tests/testthat/test-progress.R |only tests/testthat/test-roc.R | 52 ++++++++++++++++++++++ 13 files changed, 134 insertions(+), 36 deletions(-)
Title: Groupwise Statistics, LSmeans, Linear Estimates, Utilities
Description: Utility package containing:
1) Facilities for working with grouped data: 'do' something to data
stratified 'by' some variables.
2) LSmeans (least-squares means), general linear estimates.
3) Restrict functions to a smaller domain.
4) Miscellaneous other utilities.
Author: Soeren Hoejsgaard <sorenh@math.aau.dk> and Ulrich Halekoh
<uhalekoh@health.sdu.dk>
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between doBy versions 4.6.19 dated 2023-10-02 and 4.6.20 dated 2023-11-01
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 7 +++++++ R/expr_to_fun.R | 5 ++++- build/vignette.rds |binary inst/doc/doby.pdf |binary inst/doc/linest_lsmeans.pdf |binary inst/doc/section_fun.pdf |binary 8 files changed, 21 insertions(+), 11 deletions(-)
Title: A Multistate Life Table (MSLT) Methodology Based on Bayesian
Approach
Description: Create life tables with a Bayesian approach, which can be very useful for modelling a complex health process when considering multiple predisposing factors and multiple coexisting health conditions. Details for this method can be found in: Lynch, Scott, et al., (2022) <doi:10.1177/00811750221112398>; Zang, Emma, et al., (2022) <doi:10.1093/geronb/gbab149>.
Author: Emma Zang [aut, cph],
Xuezhixing Zhang [aut, cre],
Scott Lynch [aut, cph]
Maintainer: Xuezhixing Zhang <xuezhixing.zhang@yale.edu>
Diff between bayesmlogit versions 1.0.0 dated 2023-10-25 and 1.0.1 dated 2023-11-01
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/doc/Introductory-to-Package.html | 20 ++++++++++---------- man/bayesmlogit.Rd | 2 +- man/life_compare.Rd | 2 +- man/mlifeTable.Rd | 2 +- man/mlifeTable_plot.Rd | 2 +- 7 files changed, 24 insertions(+), 24 deletions(-)
Title: Transforms Institutional Data into Text Files for IPEDS
Automated Import/Upload
Description: Starting from user-supplied institutional data, these scripts
transform, aggregate, and reshape the information to produce
key-value pair data files that are able to be uploaded to IPEDS (Integrated Postsecondary Education Data System)
through their submission portal <https://surveys.nces.ed.gov/ipeds/>. Starting data specifications can be found in the vignettes.
Final files are saved locally to a location of the user's choice.
User-friendly readable files can also be produced for purposes of data review and validation.
Author: Alison Lanski [aut, cre],
Shiloh Fling [aut]
Maintainer: Alison Lanski <alanski@nd.edu>
Diff between IPEDSuploadables versions 2.8.5 dated 2023-09-06 and 2.8.7 dated 2023-11-01
DESCRIPTION | 6 MD5 | 72 ++--- NEWS.md | 7 R/specs_COM.R | 2 R/zzz.R | 8 data/specs_COM.rda |binary inst/doc/howto_overall_ipedsuploadables.R | 2 inst/doc/howto_overall_ipedsuploadables.html | 211 +++++++------- inst/doc/howto_use_autoformat.R | 2 inst/doc/howto_use_autoformat.html | 381 +++++++++++++-------------- inst/doc/setup_for_12monthenrollment.R | 11 inst/doc/setup_for_12monthenrollment.Rmd | 9 inst/doc/setup_for_12monthenrollment.html | 14 inst/doc/setup_for_completions.R | 14 inst/doc/setup_for_completions.Rmd | 12 inst/doc/setup_for_completions.html | 25 + inst/doc/setup_for_fallenrollment.R | 10 inst/doc/setup_for_fallenrollment.Rmd | 8 inst/doc/setup_for_fallenrollment.html | 14 inst/doc/setup_for_gr.R | 11 inst/doc/setup_for_gr.Rmd | 9 inst/doc/setup_for_gr.html | 14 inst/doc/setup_for_gr200.R | 8 inst/doc/setup_for_gr200.Rmd | 6 inst/doc/setup_for_gr200.html | 14 inst/doc/setup_for_hr.R | 2 inst/doc/setup_for_hr.html | 14 inst/doc/setup_for_om.R | 10 inst/doc/setup_for_om.Rmd | 8 inst/doc/setup_for_om.html | 14 man/specs_COM.Rd | 2 vignettes/setup_for_12monthenrollment.Rmd | 9 vignettes/setup_for_completions.Rmd | 12 vignettes/setup_for_fallenrollment.Rmd | 8 vignettes/setup_for_gr.Rmd | 9 vignettes/setup_for_gr200.Rmd | 6 vignettes/setup_for_om.Rmd | 8 37 files changed, 528 insertions(+), 444 deletions(-)
More information about IPEDSuploadables at CRAN
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Title: Template Engine Inspired by 'Jinja'
Description: Template engine powered by the 'inja' C++ library. Users
write a template document, using syntax inspired by the 'Jinja' Python
package, and then render the final document by passing data from R.
The template syntax supports features such as variables, loops,
conditions and inheritance.
Author: David Hall [aut, cre, cph] ,
Lars Berscheid [cph] ,
Niels Lohmann [cph]
Maintainer: David Hall <david.hall.physics@gmail.com>
Diff between jinjar versions 0.3.0 dated 2022-07-23 and 0.3.1 dated 2023-11-01
DESCRIPTION | 9 MD5 | 51 ++-- NEWS.md | 8 R/condition.R | 21 - R/encode.R | 6 R/render.R | 9 README.md | 24 +- build/vignette.rds |binary inst/doc/auxiliary-templates.R | 4 inst/doc/auxiliary-templates.html | 264 +++++++++++------------ inst/doc/template-syntax.R | 4 inst/doc/template-syntax.Rmd | 36 ++- inst/doc/template-syntax.html | 436 ++++++++++++++++++++------------------ man/figures |only man/jinjar-package.Rd | 2 man/render.Rd | 11 src/inja/inja.hpp | 2 src/template.cpp | 10 tests/testthat/_snaps/config.md | 6 tests/testthat/_snaps/encode.md | 17 + tests/testthat/_snaps/parse.md | 48 ++-- tests/testthat/_snaps/render.md | 212 +++++++++++++----- tests/testthat/test-config.R | 2 tests/testthat/test-encode.R | 6 tests/testthat/test-parse.R | 2 tests/testthat/test-render.R | 22 + vignettes/template-syntax.Rmd | 36 ++- 27 files changed, 746 insertions(+), 502 deletions(-)
Title: Fits Models Inside the Database
Description: Uses 'dplyr' and 'tidyeval' to fit statistical models inside
the database. It currently supports KMeans and linear regression
models.
Author: Edgar Ruiz [aut],
Max Kuhn [aut, cre]
Maintainer: Max Kuhn <max@posit.co>
Diff between modeldb versions 0.2.3 dated 2022-08-16 and 0.3.0 dated 2023-11-01
modeldb-0.2.3/modeldb/R/modeldb.R |only modeldb-0.3.0/modeldb/DESCRIPTION | 28 modeldb-0.3.0/modeldb/MD5 | 56 modeldb-0.3.0/modeldb/NEWS.md | 4 modeldb-0.3.0/modeldb/R/as-parsed-model.R | 15 modeldb-0.3.0/modeldb/R/kmeans-viz.R | 119 modeldb-0.3.0/modeldb/R/kmeans.R | 110 modeldb-0.3.0/modeldb/R/lm.R | 84 modeldb-0.3.0/modeldb/R/model_prep.R | 8 modeldb-0.3.0/modeldb/R/modeldb-package.R |only modeldb-0.3.0/modeldb/README.md | 5 modeldb-0.3.0/modeldb/build/vignette.rds |binary modeldb-0.3.0/modeldb/inst/doc/kmeans.R | 2 modeldb-0.3.0/modeldb/inst/doc/kmeans.Rmd | 4 modeldb-0.3.0/modeldb/inst/doc/kmeans.html |16949 +++++++++++- modeldb-0.3.0/modeldb/inst/doc/linear-regression.R | 8 modeldb-0.3.0/modeldb/inst/doc/linear-regression.Rmd | 8 modeldb-0.3.0/modeldb/inst/doc/linear-regression.html | 298 modeldb-0.3.0/modeldb/man/linear_regression_db.Rd | 4 modeldb-0.3.0/modeldb/man/modeldb-package.Rd | 4 modeldb-0.3.0/modeldb/man/plot_kmeans.Rd | 10 modeldb-0.3.0/modeldb/man/simple_kmeans_db.Rd | 6 modeldb-0.3.0/modeldb/tests/testthat.R | 8 modeldb-0.3.0/modeldb/tests/testthat/test-as-parsed-model.R | 2 modeldb-0.3.0/modeldb/tests/testthat/test_dummy_var.R | 10 modeldb-0.3.0/modeldb/tests/testthat/test_kmeans.R | 7 modeldb-0.3.0/modeldb/tests/testthat/test_kmeans_viz.R | 23 modeldb-0.3.0/modeldb/tests/testthat/test_lr.R | 8 modeldb-0.3.0/modeldb/vignettes/kmeans.Rmd | 4 modeldb-0.3.0/modeldb/vignettes/linear-regression.Rmd | 8 30 files changed, 17278 insertions(+), 514 deletions(-)
Title: Parsing and Evaluation Tools that Provide More Details than the
Default
Description: Parsing and evaluation tools that make it easy to recreate the
command line behaviour of R.
Author: Hadley Wickham [aut],
Yihui Xie [aut, cre] ,
Michael Lawrence [ctb],
Thomas Kluyver [ctb],
Jeroen Ooms [ctb],
Barret Schloerke [ctb],
Adam Ryczkowski [ctb],
Hiroaki Yutani [ctb],
Michel Lang [ctb],
Karolis Koncevicius [ctb],
Posit Software, PBC [cph, [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between evaluate versions 0.22 dated 2023-09-29 and 0.23 dated 2023-11-01
evaluate-0.22/evaluate/tests/testthat/testthat-problems.rds |only evaluate-0.23/evaluate/DESCRIPTION | 6 +-- evaluate-0.23/evaluate/MD5 | 13 +++----- evaluate-0.23/evaluate/NEWS.md | 7 ++++ evaluate-0.23/evaluate/R/eval.R | 19 +++++++++++- evaluate-0.23/evaluate/R/graphics.R | 4 +- evaluate-0.23/evaluate/man/evaluate.Rd | 5 ++- evaluate-0.23/evaluate/tests/testthat/test-graphics.R | 11 ++++++ 8 files changed, 52 insertions(+), 13 deletions(-)
Title: Supporting Functions for Packages Maintained by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] ,
Wush Wu [ctb],
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brueggemann [ctb] ,
Christophe Dervieux [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.40 dated 2023-08-09 and 0.41 dated 2023-11-01
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/io.R | 20 +++++++++++--------- R/session.R | 7 ++++++- inst/doc/xfun.R | 4 ++-- inst/doc/xfun.html | 16 ++++++---------- man/process_file.Rd | 14 +++++++------- 8 files changed, 48 insertions(+), 39 deletions(-)
Title: Series Temporelles Avec R
Description: Functions, data sets and exercises solutions for the book Series Temporelles Avec R (Yves Aragon, edp sciences, 2016). For all chapters, a vignette is available with some additional material and exercises solutions.
Author: Thibault Laurent [aut, cre, cph],
Yves Aragon [aut]
Maintainer: Thibault Laurent <Thibault.Laurent@univ-tlse1.fr>
Diff between caschrono versions 2.3 dated 2022-11-15 and 2.4 dated 2023-11-01
caschrono-2.3/caschrono/build |only caschrono-2.4/caschrono/DESCRIPTION | 23 ++++++----- caschrono-2.4/caschrono/MD5 | 39 +++++++++----------- caschrono-2.4/caschrono/inst/CITATION | 18 ++++----- caschrono-2.4/caschrono/inst/doc/Anx1.pdf |binary caschrono-2.4/caschrono/inst/doc/Anx10.pdf |binary caschrono-2.4/caschrono/inst/doc/Anx12.pdf |binary caschrono-2.4/caschrono/inst/doc/Anx2.pdf |binary caschrono-2.4/caschrono/inst/doc/Anx3.pdf |binary caschrono-2.4/caschrono/inst/doc/Anx4.pdf |binary caschrono-2.4/caschrono/inst/doc/Anx5.pdf |binary caschrono-2.4/caschrono/inst/doc/Anx6.pdf |binary caschrono-2.4/caschrono/inst/doc/Anx7.pdf |binary caschrono-2.4/caschrono/inst/doc/Anx9.pdf |binary caschrono-2.4/caschrono/inst/import/Tel_extrait.csv | 6 +-- caschrono-2.4/caschrono/man/Box.test.2.rd | 4 +- caschrono-2.4/caschrono/man/caschrono-package.Rd | 2 - caschrono-2.4/caschrono/man/csdl.rd | 4 +- caschrono-2.4/caschrono/man/lait.Rd | 2 - caschrono-2.4/caschrono/man/popfr.Rd | 2 - caschrono-2.4/caschrono/man/trafmensu.rd | 4 +- 21 files changed, 53 insertions(+), 51 deletions(-)
Title: Load Both User-Global and Project-Specific R Profile
Configurations
Description: Use rprofile::load() inside a project '.Rprofile' file to ensure that the user-global '.Rprofile' is
loaded correctly regardless of its location, and other common resources (in particular 'renv') are also set up
correctly.
Author: Konrad Rudolph [cre, aut] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Konrad Rudolph <konrad.rudolph@roche.com>
Diff between rprofile versions 0.2.0 dated 2023-08-09 and 0.4.0 dated 2023-11-01
DESCRIPTION | 13 +++++--- MD5 | 17 +++++++--- NEWS.md |only R/dev.r |only R/dotenv.r |only R/dots.r | 2 - R/load.r | 72 ++++------------------------------------------ R/renv.r |only R/rprofile.r |only README.md |only inst |only man/load.Rd | 23 +++++++++++--- tests/framework/testing.r | 13 +++----- 13 files changed, 52 insertions(+), 88 deletions(-)
Title: Visualization Methods for Raster Data
Description: Methods for enhanced visualization and interaction with raster data. It implements visualization methods for quantitative data and categorical data, both for univariate and multivariate rasters. It also provides methods to display spatiotemporal rasters, and vector fields. See the website for examples.
Author: Oscar Perpinan Lamigueiro [cre, aut]
,
Robert Hijmans [aut],
Alexandre Courtiol [ctb]
Maintainer: Oscar Perpinan Lamigueiro <oscar.perpinan@upm.es>
Diff between rasterVis versions 0.51.5 dated 2023-01-06 and 0.51.6 dated 2023-11-01
DESCRIPTION | 15 ++++---- MD5 | 17 +++++---- NAMESPACE | 5 ++ R/latticeRaster.R | 28 +++++++++++++++ build/partial.rdb |binary inst/CITATION | 4 +- man/hovmoller-methods.Rd | 9 ++--- man/levelplot-methods.Rd | 84 +++++++++++++++++++++++++---------------------- man/miscLattice.Rd |only man/vectorplot.Rd | 22 +++++++----- 10 files changed, 117 insertions(+), 67 deletions(-)
Title: Generate Synthetic Data from Statistical Models
Description: Generate synthetic time series from commonly used statistical models, including linear, nonlinear and chaotic systems. Applications to testing methods can be found in Jiang, Z., Sharma, A., & Johnson, F. (2019) <doi:10.1016/j.advwatres.2019.103430> and Jiang, Z., Sharma, A., & Johnson, F. (2020) <doi:10.1029/2019WR026962> associated with an open-source tool by Jiang, Z., Rashid, M. M., Johnson, F., & Sharma, A. (2020) <doi:10.1016/j.envsoft.2020.104907>.
Author: Ze Jiang [aut, cre]
Maintainer: Ze Jiang <ze.jiang@unsw.edu.au>
Diff between synthesis versions 1.2.3 dated 2021-11-27 and 1.2.4 dated 2023-11-01
DESCRIPTION | 12 MD5 | 28 - NEWS.md | 5 R/data_gen_AR.R | 10 R/data_gen_BM.R | 8 R/data_gen_Chaotic.R | 20 build/vignette.rds |binary inst/doc/synthesis.R | 43 + inst/doc/synthesis.Rmd | 47 +- inst/doc/synthesis.html | 1075 ++++++++++++++++++++++++++++++++++-------------- man/data.gen.Rossler.Rd | 22 man/data.gen.ar1.Rd | 2 man/data.gen.ar4.Rd | 4 man/data.gen.ar9.Rd | 4 vignettes/synthesis.Rmd | 47 +- 15 files changed, 913 insertions(+), 414 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-13 1.0.9
Title: Extended Generalised Linear Hidden Markov Models
Description: Fits a variety of hidden Markov models, structured
in an extended generalized linear model framework. See
T. Rolf Turner, Murray A. Cameron, and Peter J. Thomson
(1998) <doi:10.2307/3315677>, and
Rolf Turner (2008) <doi:10.1016/j.csda.2008.01.029>
and the references cited therein.
Author: Rolf Turner [aut, cre]
Maintainer: Rolf Turner <rolfturner@posteo.net>
Diff between eglhmm versions 0.0-23 dated 2023-10-19 and 0.1-1 dated 2023-11-01
eglhmm-0.0-23/eglhmm/inst/Notes/notes.aux |only eglhmm-0.0-23/eglhmm/inst/Notes/notes.log |only eglhmm-0.0-23/eglhmm/inst/Ratfor |only eglhmm-0.0-23/eglhmm/inst/init.c |only eglhmm-0.0-23/eglhmm/src/afun.f |only eglhmm-0.0-23/eglhmm/src/bfun.f |only eglhmm-0.0-23/eglhmm/src/delta.f |only eglhmm-0.0-23/eglhmm/src/derivf.f |only eglhmm-0.0-23/eglhmm/src/derivf1.f |only eglhmm-0.0-23/eglhmm/src/derivf2.f |only eglhmm-0.0-23/eglhmm/src/derivf3.f |only eglhmm-0.0-23/eglhmm/src/derivf4.f |only eglhmm-0.0-23/eglhmm/src/derivf5.f |only eglhmm-0.0-23/eglhmm/src/derivfab.f |only eglhmm-0.0-23/eglhmm/src/derivfdbd.f |only eglhmm-0.0-23/eglhmm/src/esttpm.f |only eglhmm-0.0-23/eglhmm/src/gethgl.f |only eglhmm-0.0-23/eglhmm/src/gfun.f |only eglhmm-0.0-23/eglhmm/src/pmf.f |only eglhmm-0.0-23/eglhmm/src/prephi.f |only eglhmm-0.0-23/eglhmm/src/recurse.f |only eglhmm-0.0-23/eglhmm/src/xfun.f |only eglhmm-0.1-1/eglhmm/ChangeLog | 37 +++++++++++++++ eglhmm-0.1-1/eglhmm/DESCRIPTION | 8 +-- eglhmm-0.1-1/eglhmm/MD5 | 70 +++++++++-------------------- eglhmm-0.1-1/eglhmm/build/partial.rdb |binary eglhmm-0.1-1/eglhmm/inst/doc/eglhmm.pdf |binary eglhmm-0.1-1/eglhmm/man/eglhmm-internal.Rd | 6 ++ eglhmm-0.1-1/eglhmm/man/eglhmm.Rd | 6 +- eglhmm-0.1-1/eglhmm/src/afun.f90 |only eglhmm-0.1-1/eglhmm/src/bfun.f90 |only eglhmm-0.1-1/eglhmm/src/delta.f90 |only eglhmm-0.1-1/eglhmm/src/derivf.f90 |only eglhmm-0.1-1/eglhmm/src/derivf1.f90 |only eglhmm-0.1-1/eglhmm/src/derivf2.f90 |only eglhmm-0.1-1/eglhmm/src/derivf3.f90 |only eglhmm-0.1-1/eglhmm/src/derivf4.f90 |only eglhmm-0.1-1/eglhmm/src/derivf5.f90 |only eglhmm-0.1-1/eglhmm/src/derivfab.f90 |only eglhmm-0.1-1/eglhmm/src/esttpm.f90 |only eglhmm-0.1-1/eglhmm/src/gethgl.f90 |only eglhmm-0.1-1/eglhmm/src/gfun.f90 |only eglhmm-0.1-1/eglhmm/src/pmf.f90 |only eglhmm-0.1-1/eglhmm/src/prephi.f90 |only eglhmm-0.1-1/eglhmm/src/recurse.f90 |only eglhmm-0.1-1/eglhmm/src/xfun.f90 |only 46 files changed, 73 insertions(+), 54 deletions(-)
Title: Tidy Tools for 'Raster' Data
Description: Facilities to work with vector and raster data in efficient
repeatable and systematic work flow. Missing functionality in existing packages
is included here to allow extraction from raster data with 'simple features' and
'Spatial' types and to make extraction consistent and straightforward. Extract cell
numbers from raster data and return the cells as a data frame
rather than as lists of matrices or vectors. The functions here allow spatial data
to be used without special handling for the format currently in use.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between tabularaster versions 0.7.1 dated 2022-10-17 and 0.7.2 dated 2023-11-01
DESCRIPTION | 11 MD5 | 12 - NEWS.md | 4 R/tabularaster-package.R | 11 build/vignette.rds |binary inst/doc/cell-index-raster-abstraction.html | 18 - inst/doc/tabularaster-usage.html | 323 ++++++++++++++-------------- 7 files changed, 195 insertions(+), 184 deletions(-)
Title: Prediction Intervals for Synthetic Control Methods with Multiple
Treated Units and Staggered Adoption
Description: Implementation of prediction and inference procedures for Synthetic Control methods using least square, lasso, ridge, or simplex-type constraints. Uncertainty is quantified with prediction intervals as developed in Cattaneo, Feng, and Titiunik (2021) <https://nppackages.github.io/references/Cattaneo-Feng-Titiunik_2021_JASA.pdf> for a single treated unit and in Cattaneo, Feng, Palomba, and Titiunik (2023) <arXiv:2210.05026> for multiple treated units and staggered adoption. More details about the software implementation can be found in Cattaneo, Feng, Palomba, and Titiunik (2022) <arXiv:2202.05984>.
Author: Matias Cattaneo [aut],
Yingjie Feng [aut],
Filippo Palomba [aut, cre],
Rocio Titiunik [aut]
Maintainer: Filippo Palomba <fpalomba@princeton.edu>
Diff between scpi versions 2.2.4 dated 2023-05-20 and 2.2.5 dated 2023-11-01
DESCRIPTION | 8 - MD5 | 14 +- R/scdataMulti.R | 3 R/scest.R | 21 ++-- R/scpi.R | 14 +- R/scplotMulti.R | 125 +++++------------------- R/supporting_functions.R | 242 +++++++++++++++++++++++++++++------------------ man/scdataMulti.Rd | 2 8 files changed, 210 insertions(+), 219 deletions(-)
Title: Integrated Toolkit for Psychological Analysis and Modeling in R
Description: A beginner-friendly R package for modeling in psychology or
related field. It allows fitting models, plotting, checking goodness
of fit, and model assumption violations all in one place. It also
produces beautiful and easy-to-read output.
Author: Jason Moy [aut, cre]
Maintainer: Jason Moy <jasonmoy28@gmail.com>
Diff between psycModel versions 0.4.1 dated 2022-10-03 and 0.5.0 dated 2023-11-01
DESCRIPTION | 12 MD5 | 76 +-- NAMESPACE | 2 NEWS.md | 2 R/cfa_summary.R | 6 R/compare_fit.R | 4 R/cor_test.R | 4 R/descriptive_table.R | 4 R/efa_summary.R | 2 R/lm_model.R | 13 R/lm_model_summary.R | 22 R/lm_model_table.R |only R/lme_model.R | 12 R/lme_model_summary.R | 46 + R/measurement_invariance.R | 11 R/mediation_summary.R | 12 R/model_summary.R | 66 +- R/simple_slope.R | 22 R/utils-coefficent-to-p.R |only R/utils-print-table.R | 20 README.md | 14 inst/doc/brief-introduction-to-select-syntax.R | 2 inst/doc/brief-introduction-to-select-syntax.html | 196 +++---- inst/doc/quick-introduction.R | 2 inst/doc/quick-introduction.html | 354 +++++++------- man/cfa_summary.Rd | 3 man/coefficent_to_p.Rd |only man/cor_test.Rd | 2 man/lm_model.Rd | 4 man/lm_model_summary.Rd | 2 man/lm_model_table.Rd |only man/lme_multilevel_model_summary.Rd | 6 man/measurement_invariance.Rd | 3 man/model_summary.Rd | 7 man/print_table.Rd | 4 man/simple_slope.Rd | 2 tests/testthat/Rplots.pdf |only tests/testthat/test-anova-plot.R | 6 tests/testthat/test-integrated-multilevel-model-summary.R | 64 +- tests/testthat/test-interaction-plot.R | 33 - tests/testthat/test-model-summary.R | 76 +-- tests/testthat/test-model-table.R |only 42 files changed, 601 insertions(+), 515 deletions(-)
Title: Straightforward 'NetCDF' Metadata
Description: Extract metadata from 'NetCDF' data sources, these can be files, file handles or
servers. This package leverages and extends the lower level functions of the 'RNetCDF' package
providing a consistent set of functions that all return data frames. We introduce named concepts
of 'grid', 'axis' and 'source' which are all meaningful entities without formal definition in the
'NetCDF' library <https://www.unidata.ucar.edu/software/netcdf/>. 'RNetCDF' matches the library
itself with only the named concepts of 'variables', 'dimensions' and 'attributes'.
Author: Michael Sumner [aut, cre],
Tomas Remenyi [ctb],
Ben Raymond [ctb],
David Blodgett [ctb],
Milton Woods [ctb]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between ncmeta versions 0.3.5 dated 2022-10-26 and 0.3.6 dated 2023-11-01
ncmeta-0.3.5/ncmeta/man/ncmeta.Rd |only ncmeta-0.3.6/ncmeta/DESCRIPTION | 8 ++++---- ncmeta-0.3.6/ncmeta/MD5 | 8 ++++---- ncmeta-0.3.6/ncmeta/NEWS.md | 4 ++++ ncmeta-0.3.6/ncmeta/R/ncmeta-package.r | 10 ++++++++-- ncmeta-0.3.6/ncmeta/man/ncmeta-package.Rd |only 6 files changed, 20 insertions(+), 10 deletions(-)
Title: A Service for Tidy Transcriptomics Software Suite
Description: It provides generic methods that are used by more than one package, avoiding conflicts. This package will be imported by 'tidySingleCellExperiment' and 'tidyseurat'.
Author: Stefano Mangiola [aut, cre]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Diff between ttservice versions 0.3.8 dated 2023-08-24 and 0.4.0 dated 2023-11-01
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NAMESPACE | 3 +++ R/methods.R | 48 +++++++++++++++++++++++++++++++++++++++++++++++- man/dplyr-methods.Rd | 2 +- man/plot_ly.Rd |only 6 files changed, 60 insertions(+), 10 deletions(-)
Title: Single-Species, Multi-Species, and Integrated Spatial Occupancy
Models
Description: Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2 [...truncated...]
Author: Jeffrey Doser [aut, cre],
Andrew Finley [aut],
Marc Kery [ctb]
Maintainer: Jeffrey Doser <doserjef@msu.edu>
Diff between spOccupancy versions 0.7.1 dated 2023-08-31 and 0.7.2 dated 2023-11-01
DESCRIPTION | 6 MD5 | 93 ++++----- NAMESPACE | 22 ++ NEWS.md | 8 R/generics.R | 62 ++++-- R/getSVCSamples.R | 13 - R/lfJSDM.R | 107 ++++++---- R/plot-generics.R |only R/sfJSDM.R | 290 ++++++++++++++++++++++------- R/simMsOcc.R | 106 ++++++---- R/simOcc.R | 48 ++++ R/spPGOcc.R | 407 ++++++++++++++++++++--------------------- R/svcTMsPGOcc.R | 30 +-- README.md | 10 - build/partial.rdb |binary man/lfJSDM.Rd | 4 man/predict.sfJSDM.Rd | 3 man/sfJSDM.Rd | 38 +++ man/simMsOcc.Rd | 4 man/simOcc.Rd | 4 man/summary.PGOcc.Rd | 8 man/summary.intMsPGOcc.Rd | 9 man/summary.intPGOcc.Rd | 8 man/summary.lfJSDM.Rd | 9 man/summary.lfMsPGOcc.Rd | 10 - man/summary.msPGOcc.Rd | 9 man/summary.sfJSDM.Rd | 9 man/summary.sfMsPGOcc.Rd | 10 - man/summary.spIntPGOcc.Rd | 8 man/summary.spMsPGOcc.Rd | 9 man/summary.spPGOcc.Rd | 8 man/summary.stMsPGOcc.Rd | 10 - man/summary.stPGOcc.Rd | 9 man/summary.svcMsPGOcc.Rd | 10 - man/summary.svcPGBinom.Rd | 8 man/summary.svcPGOcc.Rd | 8 man/summary.svcTMsPGOcc.Rd | 10 - man/summary.svcTPGBinom.Rd | 8 man/summary.svcTPGOcc.Rd | 8 man/summary.tMsPGOcc.Rd | 9 man/summary.tPGOcc.Rd | 8 src/init.cpp | 6 src/lfJSDM.cpp | 215 +++++++++++---------- src/sfJSDMNNGP.cpp | 349 +++++++++++++++++++++-------------- src/sfMsPGOccNNGPPredict.cpp | 28 ++ src/spOccupancy.h | 32 +-- src/svcTMsPGOccNNGP.cpp | 8 src/svcTMsPGOccNNGPPredict.cpp | 3 48 files changed, 1327 insertions(+), 754 deletions(-)
Title: Gliding Box Lacunarity and Other Metrics for 2D Random Closed
Sets
Description: Functions for estimating the gliding box lacunarity (GBL),
covariance, and pair-correlation of a random closed set (RACS) in 2D
from a binary coverage map (e.g. presence-absence land cover maps).
Contains a number of newly-developed covariance-based estimators of
GBL (Hingee et al., 2019) <doi:10.1007/s13253-019-00351-9> and
balanced estimators, proposed by Picka (2000)
<http://www.jstor.org/stable/1428408>, for covariance, centred
covariance, and pair-correlation. Also contains methods for
estimating contagion-like properties of RACS and simulating 2D Boolean
models. Binary coverage maps are usually represented as raster images
with pixel values of TRUE, FALSE or NA, with NA representing
unobserved pixels. A demo for extracting such a binary map from a
geospatial data format is provided. Binary maps may also be
represented using polygonal sets as the foreground, however for most
computations such maps are converted into raster images. The package
is based on research [...truncated...]
Author: Kassel Liam Hingee
Maintainer: Kassel Liam Hingee <kassel.hingee@gmail.com>
Diff between lacunaritycovariance versions 1.1-5 dated 2023-02-08 and 1.1-6 dated 2023-11-01
DESCRIPTION | 10 ++-- MD5 | 15 +++--- NEWS | 3 + R/lacunaritycovariance-package.R |only build/partial.rdb |binary build/vignette.rds |binary demo/import_remote_sense_data.R | 8 ++- inst/doc/estimate_RACS_properties.pdf |binary man/lacunaritycovariance-package.Rd | 84 +++++++++++++++++----------------- 9 files changed, 64 insertions(+), 56 deletions(-)
More information about lacunaritycovariance at CRAN
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