Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-08 1.5.0
2022-09-12 1.4.0
2020-09-03 1.1.0
2020-07-28 1.0.0
2020-07-26 0.2.0
2015-06-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-23 0.1.0
Title: Batch Correction of Single Cell Transcriptome Data
Description: Non-linear/linear hybrid method for batch-effect correction
that uses Mutual Nearest Neighbors (MNNs) to identify similar cells between
datasets. Reference: Loza M. et al. (NAR Genomics and Bioinformatics, 2020) <doi:10.1093/nargab/lqac022>.
Author: Martin Loza [aut, cre] ,
Diego Diez [aut]
Maintainer: Martin Loza <martin.loza.lopez@gmail.com>
Diff between Canek versions 0.2.3 dated 2023-10-18 and 0.2.4 dated 2023-11-05
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS.md | 6 ++++++ R/Canek-package.R | 1 + R/RunCanek.R | 5 ++++- build/partial.rdb |binary inst/doc/toy_example.html | 6 +++--- tests/testthat/test_RunCanek.R | 2 +- 9 files changed, 28 insertions(+), 17 deletions(-)
Title: Rational Approximations of Fractional Stochastic Partial
Differential Equations
Description: Functions that compute rational approximations of fractional elliptic stochastic partial differential equations. The package also contains functions for common statistical usage of these approximations. The main references for rSPDE are Bolin, Simas and Xiong (2023) <doi:10.1080/10618600.2023.2231051> for the covariance-based method and Bolin and Kirchner (2020) <doi:10.1080/10618600.2019.1665537> for the operator-based rational approximation. These can be generated by the citation function in R.
Author: David Bolin [cre, aut],
Alexandre Simas [aut],
Finn Lindgren [ctb]
Maintainer: David Bolin <davidbolin@gmail.com>
Diff between rSPDE versions 2.3.2 dated 2023-07-02 and 2.3.3 dated 2023-11-05
rSPDE-2.3.2/rSPDE/inst/doc/build_source.html |only rSPDE-2.3.2/rSPDE/inst/doc/build_source.html.asis |only rSPDE-2.3.2/rSPDE/inst/doc/rSPDE.html |only rSPDE-2.3.2/rSPDE/inst/doc/rSPDE.html.asis |only rSPDE-2.3.2/rSPDE/inst/doc/rspde_base.html |only rSPDE-2.3.2/rSPDE/inst/doc/rspde_base.html.asis |only rSPDE-2.3.2/rSPDE/inst/doc/rspde_cov.html |only rSPDE-2.3.2/rSPDE/inst/doc/rspde_cov.html.asis |only rSPDE-2.3.2/rSPDE/inst/doc/rspde_inla.html |only rSPDE-2.3.2/rSPDE/inst/doc/rspde_inla.html.asis |only rSPDE-2.3.2/rSPDE/inst/doc/rspde_inlabru.html |only rSPDE-2.3.2/rSPDE/inst/doc/rspde_inlabru.html.asis |only rSPDE-2.3.2/rSPDE/tests/testthat/test.fem.R |only rSPDE-2.3.2/rSPDE/vignettes/build_source.html.asis |only rSPDE-2.3.2/rSPDE/vignettes/rSPDE.html.asis |only rSPDE-2.3.2/rSPDE/vignettes/rspde_base.html.asis |only rSPDE-2.3.2/rSPDE/vignettes/rspde_cov.html.asis |only rSPDE-2.3.2/rSPDE/vignettes/rspde_inla.html.asis |only rSPDE-2.3.2/rSPDE/vignettes/rspde_inlabru.html.asis |only rSPDE-2.3.3/rSPDE/DESCRIPTION | 20 rSPDE-2.3.3/rSPDE/MD5 | 82 - rSPDE-2.3.3/rSPDE/NAMESPACE | 20 rSPDE-2.3.3/rSPDE/NEWS.md | 11 rSPDE-2.3.3/rSPDE/R/fractional.computations.R | 179 ++- rSPDE-2.3.3/rSPDE/R/fractional.operators.R | 177 ++- rSPDE-2.3.3/rSPDE/R/inla_rspde.R | 509 ++++++++- rSPDE-2.3.3/rSPDE/R/inlabru_rspde.R | 134 +- rSPDE-2.3.3/rSPDE/R/intrinsic.R | 73 - rSPDE-2.3.3/rSPDE/R/operator.operations.R | 2 rSPDE-2.3.3/rSPDE/R/rSPDE.R | 13 rSPDE-2.3.3/rSPDE/R/rspde_lme.R | 591 +++++++++-- rSPDE-2.3.3/rSPDE/R/util.R | 183 +++ rSPDE-2.3.3/rSPDE/build/vignette.rds |binary rSPDE-2.3.3/rSPDE/inst/CITATION | 2 rSPDE-2.3.3/rSPDE/inst/COPYRIGHTS | 6 rSPDE-2.3.3/rSPDE/inst/doc/rSPDE_package.R |only rSPDE-2.3.3/rSPDE/inst/doc/rSPDE_package.Rmd |only rSPDE-2.3.3/rSPDE/inst/doc/rSPDE_package.html |only rSPDE-2.3.3/rSPDE/man/augment.rspde_lme.Rd |only rSPDE-2.3.3/rSPDE/man/bru_get_mapper.inla_rspde.Rd | 6 rSPDE-2.3.3/rSPDE/man/cross_validation.Rd | 9 rSPDE-2.3.3/rSPDE/man/glance.rspde_lme.Rd |only rSPDE-2.3.3/rSPDE/man/graph_data_rspde.Rd |only rSPDE-2.3.3/rSPDE/man/intrinsic.matern.operators.Rd | 28 rSPDE-2.3.3/rSPDE/man/matern.operators.Rd | 2 rSPDE-2.3.3/rSPDE/man/predict.rspde_lme.Rd | 19 rSPDE-2.3.3/rSPDE/man/rSPDE.Rd | 5 rSPDE-2.3.3/rSPDE/man/rSPDE.fem2d.Rd |only rSPDE-2.3.3/rSPDE/man/rSPDE.loglike.Rd | 2 rSPDE-2.3.3/rSPDE/man/rspde.make.A.Rd | 3 rSPDE-2.3.3/rSPDE/man/spde.make.A.Rd |only rSPDE-2.3.3/rSPDE/man/spde.matern.operators.Rd | 4 rSPDE-2.3.3/rSPDE/man/variogram.intrinsic.spde.Rd | 28 rSPDE-2.3.3/rSPDE/tests/testthat/test.fractional.operators.R | 44 rSPDE-2.3.3/rSPDE/tests/testthat/test.operator.operations.R | 2 rSPDE-2.3.3/rSPDE/vignettes/rSPDE_package.Rmd |only 56 files changed, 1737 insertions(+), 417 deletions(-)
Title: Applied Psychometric Theory
Description: Contains functions useful for correlation theory,
meta-analysis (validity-generalization), reliability,
item analysis, inter-rater reliability, and classical utility.
Author: Thomas D. Fletcher
Maintainer: Thomas D. Fletcher <t.d.fletcher05@gmail.com>
Diff between psychometric versions 2.3 dated 2022-06-03 and 2.4 dated 2023-11-05
DESCRIPTION | 16 +--- MD5 | 30 ++++---- README.md | 62 ++++++++--------- man/CAFAA.Rd | 122 ++++++++++++++++----------------- man/CI.Rsq.Rd | 102 ++++++++++++++-------------- man/CI.Rsqlm.Rd | 98 +++++++++++++-------------- man/CIr.Rd | 100 +++++++++++++-------------- man/CIrb.Rd | 138 +++++++++++++++++++------------------- man/ClassUtil.Rd | 130 ++++++++++++++++++------------------ man/EnterMeta.Rd | 4 - man/ICC.lme.Rd | 136 ++++++++++++++++++------------------- man/alpha.CI.Rd | 110 +++++++++++++++--------------- man/alpha.Rd | 84 +++++++++++------------ man/artifacts.Rd | 158 ++++++++++++++++++++++---------------------- man/psychometric-package.Rd | 123 ++++++++++++++++------------------ man/r.nil.Rd | 88 ++++++++++++------------ 16 files changed, 750 insertions(+), 751 deletions(-)
Title: Access the Felt API
Description: Upload, download, and edit internet maps with the Felt API
(<https://feltmaps.notion.site/Felt-Public-API-reference-c01e0e6b0d954a678c608131b894e8e1>).
Allows users to create new maps, edit existing maps, and extract data.
Provides tools for working with layers, which represent geographic data, and elements,
which are interactive annotations. Spatial data accessed from the API is
transformed to work with 'sf'.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <christopherkenny@fas.harvard.edu>
Diff between feltr versions 0.0.2 dated 2023-07-06 and 0.0.4 dated 2023-11-05
DESCRIPTION | 11 ++++---- MD5 | 56 ++++++++++++++++++++++------------------- NAMESPACE | 5 ++- NEWS.md | 10 +++++++ R/add.R | 16 +++++++++-- R/comments.R |only R/create.R | 7 ++++- R/delete.R | 4 ++ R/felt_key.R | 4 ++ R/finish_upload.R | 2 + R/map.R | 35 ++++++++++++------------- R/map_elements.R | 2 + R/proc.R | 27 +++++++++++++++++++ R/style.R |only R/user.R | 48 ++++++++++++++++++----------------- README.md | 17 ++++++++++-- man/felt_add_map_layers.Rd | 6 +++- man/felt_add_map_layers_url.Rd | 6 +++- man/felt_create_map.Rd | 6 +++- man/felt_delete_map.Rd | 1 man/felt_delete_map_layer.Rd | 1 man/felt_finish_upload.Rd | 1 man/felt_get_comments.Rd |only man/felt_get_map.Rd | 12 -------- man/felt_get_map_elements.Rd | 1 man/felt_get_style.Rd |only man/felt_get_user.Rd | 1 man/felt_patch_style.Rd |only man/key.Rd | 1 man/set_felt_key.Rd | 1 tests/testthat/test-comments.R |only tests/testthat/test-map.R | 12 ++++---- 32 files changed, 194 insertions(+), 99 deletions(-)
Title: Visualise Clusterings at Different Resolutions
Description: Deciding what resolution to use can be a difficult question when
approaching a clustering analysis. One way to approach this problem is to
look at how samples move as the number of clusters increases. This package
allows you to produce clustering trees, a visualisation for interrogating
clusterings as resolution increases.
Author: Luke Zappia [aut, cre] ,
Alicia Oshlack [aut] ,
Andrea Rau [ctb],
Paul Hoffman [ctb]
Maintainer: Luke Zappia <luke@lazappi.id.au>
Diff between clustree versions 0.5.0 dated 2022-06-25 and 0.5.1 dated 2023-11-05
DESCRIPTION | 17 - MD5 | 62 +-- NEWS.md | 16 + R/checks.R | 8 R/clustree.R | 62 ++- R/clustree_overlay.R | 152 +++++---- R/graph.R | 24 + R/stability.R | 4 README.md | 2 build/vignette.rds |binary inst/CITATION | 4 inst/doc/clustree.R | 9 inst/doc/clustree.Rmd | 9 inst/doc/clustree.html | 524 ++++++++++++++++----------------- man/add_node_labels.Rd | 1 man/add_node_points.Rd | 1 man/aggr_metadata.Rd | 1 man/assert_colour_node_aes.Rd | 1 man/assert_node_aes.Rd | 1 man/assert_numeric_node_aes.Rd | 1 man/build_tree_graph.Rd | 1 man/calc_sc3_stability.Rd | 1 man/calc_sc3_stability_cluster.Rd | 1 man/check_node_aes_list.Rd | 1 man/get_tree_edges.Rd | 1 man/get_tree_nodes.Rd | 1 man/overlay_node_points.Rd | 1 man/plot_overlay_side.Rd | 1 man/store_node_aes.Rd | 1 tests/testthat/test-clustree-overlay.R | 48 +-- tests/testthat/test-clustree.R | 48 +-- vignettes/clustree.Rmd | 9 32 files changed, 563 insertions(+), 450 deletions(-)
Title: UK Flood Estimation
Description: Functions to implement the methods of the Flood Estimation Handbook (FEH), associated updates and the revitalised flood hydrograph model (ReFH). Currently the package uses NRFA peak flow dataset version 12.1. Aside from FEH functionality, further hydrological functions are available. Most of the methods implemented in this package are described in one or more of the following: "Flood Estimation Handbook", Centre for Ecology & Hydrology (1999, ISBN:0 948540 94 X). "Flood Estimation Handbook Supplementary Report No. 1", Kjeldsen (2007, ISBN:0 903741 15 7). "Regional Frequency Analysis - an approach based on L-moments", Hosking & Wallis (1997, ISBN: 978 0 521 01940 8). "Proposal of the extreme rank plot for extreme value analysis: with an emphasis on flood frequency studies", Hammond (2019, <doi:10.2166/nh.2019.157>). "Making better use of local data in flood frequency estimation", Environment Agency (2017, ISBN: 978 1 84911 387 8). "Sampling uncertainty of UK design flood e [...truncated...]
Author: Anthony Hammond
Maintainer: Anthony Hammond <agqhammond@gmail.com>
Diff between UKFE versions 0.3.1 dated 2023-11-01 and 0.3.2 dated 2023-11-05
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/AMSP.R | 2 +- R/NRFAData.R | 2 +- R/QMEDData.R | 2 +- data/NRFAData.rda |binary data/QMEDData.rda |binary man/AMSP.Rd | 2 +- man/NRFAData.Rd | 2 +- man/QMEDData.Rd | 2 +- 10 files changed, 19 insertions(+), 19 deletions(-)
Title: Collecting and Analyzing Mastodon Data
Description: An implementation of calls designed to collect and organize Mastodon data via its Application Program Interfaces (API), which can be found at the following URL: <https://docs.joinmastodon.org/>.
Author: David Schoch [aut, cre] ,
Chung-hong Chan [aut] ,
Johannes Gruber [ctb]
Maintainer: David Schoch <david@schochastics.net>
Diff between rtoot versions 0.3.2 dated 2023-06-29 and 0.3.3 dated 2023-11-05
DESCRIPTION | 12 +- MD5 | 41 ++++--- NAMESPACE | 4 NEWS.md | 5 R/accounts.R | 174 ++++++++++++++++++--------------- R/lists.R |only R/post.R | 99 +++++++++--------- README.md | 16 +-- inst/CITATION | 2 inst/doc/auth.R | 2 inst/doc/rtoot.R | 20 +-- inst/doc/stream.R | 2 man/get_list_accounts.Rd |only man/get_lists.Rd |only man/post_list_accounts.Rd |only man/post_list_create.Rd |only man/post_status.Rd | 8 - man/post_toot.Rd | 2 man/post_user.Rd | 8 - man/rtoot-package.Rd | 6 - tests/fixtures/get_list_accounts.yml |only tests/fixtures/get_lists.yml |only tests/fixtures/post_list_accounts.yml |only tests/fixtures/post_list_create.yml |only tests/fixtures/post_status_success.yml |only tests/testthat/test-lists.R |only tests/testthat/test-post.R | 47 ++++++-- 27 files changed, 261 insertions(+), 187 deletions(-)
Title: Processing and Analysing Animal Trajectories
Description: Tools to handle, manipulate and explore trajectory data, with an emphasis on data from tracked animals. The package is designed to support large studies with several million location records and keep track of units where possible. Data import directly from 'movebank' <https://www.movebank.org/cms/movebank-main> and files is facilitated.
Author: Bart Kranstauber [aut, cre] ,
Kamran Safi [aut] ,
Anne K. Scharf [aut]
Maintainer: Bart Kranstauber <b.kranstauber@uva.nl>
Diff between move2 versions 0.2.2 dated 2023-07-16 and 0.2.6 dated 2023-11-05
move2-0.2.2/move2/R/filter_minimal_time.R |only move2-0.2.6/move2/DESCRIPTION | 6 move2-0.2.6/move2/MD5 | 131 - move2-0.2.6/move2/NAMESPACE | 6 move2-0.2.6/move2/NEWS.md | 28 move2-0.2.6/move2/R/column_name.R | 9 move2-0.2.6/move2/R/move_convert.R | 11 move2-0.2.6/move2/R/movebank_api.R | 25 move2-0.2.6/move2/R/movebank_api_helper.R | 6 move2-0.2.6/move2/R/movebank_constants.R | 406 +++-- move2-0.2.6/move2/R/movebank_get_vocabulary.R | 8 move2-0.2.6/move2/R/mt_aeqd_crs.R |only move2-0.2.6/move2/R/mt_as_track_attribute.R |only move2-0.2.6/move2/R/mt_azimuth.R | 23 move2-0.2.6/move2/R/mt_distance.R | 30 move2-0.2.6/move2/R/mt_filter_movebank_visible.R |only move2-0.2.6/move2/R/mt_filter_per_interval.R |only move2-0.2.6/move2/R/mt_filter_unique.R | 22 move2-0.2.6/move2/R/mt_read.R | 20 move2-0.2.6/move2/R/mt_segments.R |only move2-0.2.6/move2/R/mt_stack.R | 20 move2-0.2.6/move2/R/mt_time.R | 80 - move2-0.2.6/move2/R/mt_track_id.R | 189 -- move2-0.2.6/move2/R/mt_track_lines.R |only move2-0.2.6/move2/R/new_move.R | 76 - move2-0.2.6/move2/R/sf.R |only move2-0.2.6/move2/R/tidy.R | 18 move2-0.2.6/move2/R/tidy_track.R | 3 move2-0.2.6/move2/README.md | 1 move2-0.2.6/move2/inst/WORDLIST | 9 move2-0.2.6/move2/inst/doc/convert.R | 3 move2-0.2.6/move2/inst/doc/convert.Rmd | 3 move2-0.2.6/move2/inst/doc/convert.html | 5 move2-0.2.6/move2/inst/doc/filtering_tracks.html | 727 +++++----- move2-0.2.6/move2/inst/doc/movebank.html | 517 +++---- move2-0.2.6/move2/inst/doc/programming_move2_object.Rmd | 40 move2-0.2.6/move2/inst/doc/programming_move2_object.html | 25 move2-0.2.6/move2/inst/doc/trajectory_analysis.html | 68 move2-0.2.6/move2/man/column_name.Rd | 4 move2-0.2.6/move2/man/movebank_download_study.Rd | 2 move2-0.2.6/move2/man/movebank_get_vocabulary.Rd | 8 move2-0.2.6/move2/man/mt_aeqd_crs.Rd |only move2-0.2.6/move2/man/mt_as_move2.Rd | 13 move2-0.2.6/move2/man/mt_as_track_attribute.Rd | 10 move2-0.2.6/move2/man/mt_azimuth.Rd | 13 move2-0.2.6/move2/man/mt_distance.Rd | 17 move2-0.2.6/move2/man/mt_example.Rd | 2 move2-0.2.6/move2/man/mt_filter_movebank_visible.Rd | 2 move2-0.2.6/move2/man/mt_filter_per_interval.Rd | 11 move2-0.2.6/move2/man/mt_filter_unique.Rd | 22 move2-0.2.6/move2/man/mt_read.Rd | 9 move2-0.2.6/move2/man/mt_segments.Rd | 8 move2-0.2.6/move2/man/mt_time.Rd | 34 move2-0.2.6/move2/man/mt_track_id.Rd | 45 move2-0.2.6/move2/man/mt_track_lines.Rd | 10 move2-0.2.6/move2/man/to_move.Rd | 7 move2-0.2.6/move2/tests/testthat/Rplots.pdf |binary move2-0.2.6/move2/tests/testthat/test-calculate_properties.R | 37 move2-0.2.6/move2/tests/testthat/test-column_name.R | 5 move2-0.2.6/move2/tests/testthat/test-movebank_api.R | 72 move2-0.2.6/move2/tests/testthat/test-movebank_speed.R | 2 move2-0.2.6/move2/tests/testthat/test-mt_aeqd_crs.R |only move2-0.2.6/move2/tests/testthat/test-mt_as_move2.R | 25 move2-0.2.6/move2/tests/testthat/test-mt_as_track_attribute.R | 30 move2-0.2.6/move2/tests/testthat/test-mt_set_track_id.R | 14 move2-0.2.6/move2/tests/testthat/test-mt_stack.R | 63 move2-0.2.6/move2/tests/testthat/test-print.R | 21 move2-0.2.6/move2/tests/testthat/test-segments.R | 7 move2-0.2.6/move2/tests/testthat/test-sf.R |only move2-0.2.6/move2/tests/testthat/test-tidyr.R | 38 move2-0.2.6/move2/vignettes/convert.Rmd | 3 move2-0.2.6/move2/vignettes/programming_move2_object.Rmd | 40 72 files changed, 1886 insertions(+), 1203 deletions(-)
Title: Generator from American Community Survey Geodatabases
Description: The American Community Survey (ACS)
<https://www.census.gov/programs-surveys/acs> offers geodatabases with
geographic information and associated data of interest to researchers
in the area. The goal of this package is to generate objects that
allow us to access and consult the information available in various
formats, such as in GeoPackage format or in multidimensional ROLAP
star format.
Author: Jose Samos [aut, cre, cph]
Maintainer: Jose Samos <jsamos@ugr.es>
Diff between geogenr versions 1.0.1 dated 2023-10-11 and 2.0.0 dated 2023-11-05
geogenr-1.0.1/geogenr/R/uscb_acs_5ye.R |only geogenr-1.0.1/geogenr/R/uscb_acs_5ye_get_geo.R |only geogenr-1.0.1/geogenr/R/uscb_folder.R |only geogenr-1.0.1/geogenr/R/uscb_folder_get_layer.R |only geogenr-1.0.1/geogenr/R/uscb_layer.R |only geogenr-1.0.1/geogenr/R/uscb_layer_get_layer.R |only geogenr-1.0.1/geogenr/R/uscb_metadata.R |only geogenr-1.0.1/geogenr/R/uscb_metadata_get_metadata.R |only geogenr-1.0.1/geogenr/R/uscb_metadata_interpret_metadata.R |only geogenr-1.0.1/geogenr/R/uscb_metadata_reformat_metadata.R |only geogenr-1.0.1/geogenr/data/uscb_acs_metadata.rda |only geogenr-1.0.1/geogenr/inst/extdata/ACS_2014_5YR_NECTADIV.gdb.zip |only geogenr-1.0.1/geogenr/inst/extdata/ACS_2015_5YR_NECTADIV.gdb.zip |only geogenr-1.0.1/geogenr/man/add_value.Rd |only geogenr-1.0.1/geogenr/man/assign_level.Rd |only geogenr-1.0.1/geogenr/man/define_geomultistar.Rd |only geogenr-1.0.1/geogenr/man/delete_empty_columns.Rd |only geogenr-1.0.1/geogenr/man/download_geodatabases.Rd |only geogenr-1.0.1/geogenr/man/get_available_years_downloaded.Rd |only geogenr-1.0.1/geogenr/man/get_available_years_in_the_web.Rd |only geogenr-1.0.1/geogenr/man/get_basic_flat_table.Rd |only geogenr-1.0.1/geogenr/man/get_common_flat_table.Rd |only geogenr-1.0.1/geogenr/man/get_common_geomultistar.Rd |only geogenr-1.0.1/geogenr/man/get_field_values.Rd |only geogenr-1.0.1/geogenr/man/get_flat_table.Rd |only geogenr-1.0.1/geogenr/man/get_geodatabase_file.Rd |only geogenr-1.0.1/geogenr/man/get_geodatabase_url.Rd |only geogenr-1.0.1/geogenr/man/get_geomultistar.Rd |only geogenr-1.0.1/geogenr/man/get_layer.Rd |only geogenr-1.0.1/geogenr/man/get_layer_group.Rd |only geogenr-1.0.1/geogenr/man/get_layer_group_names.Rd |only geogenr-1.0.1/geogenr/man/get_layer_names.Rd |only geogenr-1.0.1/geogenr/man/get_legal_and_administrative_areas.Rd |only geogenr-1.0.1/geogenr/man/get_place.Rd |only geogenr-1.0.1/geogenr/man/get_statistical_areas.Rd |only geogenr-1.0.1/geogenr/man/get_year_from_filepath.Rd |only geogenr-1.0.1/geogenr/man/interpret_all.Rd |only geogenr-1.0.1/geogenr/man/interpret_as.Rd |only geogenr-1.0.1/geogenr/man/interpret_as_demographic_age.Rd |only geogenr-1.0.1/geogenr/man/interpret_as_demographic_group_quarters_population.Rd |only geogenr-1.0.1/geogenr/man/interpret_as_demographic_household.Rd |only geogenr-1.0.1/geogenr/man/interpret_as_demographic_race.Rd |only geogenr-1.0.1/geogenr/man/interpret_as_demographic_sex.Rd |only geogenr-1.0.1/geogenr/man/interpret_as_demographic_total_population.Rd |only geogenr-1.0.1/geogenr/man/interpret_as_economic_food_stamps_snap.Rd |only geogenr-1.0.1/geogenr/man/interpret_as_economic_health_insurance_coverage.Rd |only geogenr-1.0.1/geogenr/man/interpret_as_economic_income_and_earnings.Rd |only geogenr-1.0.1/geogenr/man/interpret_as_economic_industry_and_occupation.Rd |only geogenr-1.0.1/geogenr/man/interpret_as_economic_journey_and_place_of_work.Rd |only geogenr-1.0.1/geogenr/man/interpret_as_economic_poverty_status.Rd |only 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geogenr-1.0.1/geogenr/tests/testthat/test-uscb_folder.R |only geogenr-1.0.1/geogenr/tests/testthat/test-uscb_layer.R |only geogenr-1.0.1/geogenr/vignettes/bibliography.bib |only geogenr-2.0.0/geogenr/DESCRIPTION | 26 geogenr-2.0.0/geogenr/MD5 | 199 geogenr-2.0.0/geogenr/NAMESPACE | 101 geogenr-2.0.0/geogenr/NEWS.md | 28 geogenr-2.0.0/geogenr/R/acs_5yr_common.R |only geogenr-2.0.0/geogenr/R/acs_5yr_download.R |only geogenr-2.0.0/geogenr/R/acs_5yr_geo.R |only geogenr-2.0.0/geogenr/R/acs_5yr_rolap.R |only geogenr-2.0.0/geogenr/R/acs_5yr_selection.R |only geogenr-2.0.0/geogenr/R/acs_5yr_topic.R |only geogenr-2.0.0/geogenr/R/data.R | 41 geogenr-2.0.0/geogenr/README.md | 316 - geogenr-2.0.0/geogenr/build/vignette.rds |binary geogenr-2.0.0/geogenr/data/acs_5yr_md.rda |only geogenr-2.0.0/geogenr/data/anrc_2021_x01.rda |only geogenr-2.0.0/geogenr/inst/doc/geogenr.R | 140 geogenr-2.0.0/geogenr/inst/doc/geogenr.Rmd | 285 - geogenr-2.0.0/geogenr/inst/doc/geogenr.html | 2227 ++++++---- 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geogenr-2.0.0/geogenr/vignettes/geogenr.Rmd | 285 - 186 files changed, 2203 insertions(+), 1557 deletions(-)
Title: Estimation and Inference for Multi-Kink Quantile Regression
Description: Estimation and inference for multiple kink quantile regression for longitudinal data and the i.i.d data. A bootstrap restarting iterative segmented quantile algorithm is proposed to estimate the multiple kink quantile regression model conditional on a given number of change points. The number of kinks is also allowed to be unknown. In such case, the backward elimination algorithm and the bootstrap restarting iterative segmented quantile algorithm are combined to select the number of change points based on a quantile BIC. For longitudinal data, we also develop the GEE estimator to incorporate the within-subject correlations. A score-type based test statistic is also developed for testing the existence of kink effect. The package is based on the paper, ``Wei Zhong, Chuang Wan and Wenyang Zhang (2022). Estimation and inference for multikink quantile regression, JBES'' and ``Chuang Wan, Wei Zhong, Wenyang Zhang and Changliang Zou (2022). Multi-kink quantile regression for longitudinal dat [...truncated...]
Author: Chuang Wan [aut, cre],
Wei Zhong [aut]
Maintainer: Chuang Wan <wanchuanghnu@126.com>
Diff between MultiKink versions 0.1.0 dated 2020-05-04 and 0.2.0 dated 2023-11-05
MultiKink-0.1.0/MultiKink/man/kinkTest.Rd |only MultiKink-0.2.0/MultiKink/DESCRIPTION | 17 MultiKink-0.2.0/MultiKink/MD5 | 21 MultiKink-0.2.0/MultiKink/NAMESPACE | 35 MultiKink-0.2.0/MultiKink/R/MultiKink-package.R |only MultiKink-0.2.0/MultiKink/R/data.R |only MultiKink-0.2.0/MultiKink/R/mkqr.R | 1641 ++++++++++++++------- MultiKink-0.2.0/MultiKink/data/triceps.rda |binary MultiKink-0.2.0/MultiKink/man/KinkTest.Rd |only MultiKink-0.2.0/MultiKink/man/MultiKink-package.Rd |only MultiKink-0.2.0/MultiKink/man/fit.control.Rd | 103 - MultiKink-0.2.0/MultiKink/man/mkqr.bea.Rd | 178 +- MultiKink-0.2.0/MultiKink/man/mkqr.fit.Rd | 169 +- MultiKink-0.2.0/MultiKink/man/triceps.Rd | 63 14 files changed, 1450 insertions(+), 777 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] ,
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 2.7.1 dated 2023-09-27 and 2.8.0 dated 2023-11-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/databricks-utils.R | 47 ++++++++++++++++++++++++++++++++++------------- R/tracking-client.R | 2 +- 4 files changed, 41 insertions(+), 20 deletions(-)
Title: Variance-Adjusted Mahalanobis
Description: Contains logic for cell-specific gene set scoring of single cell RNA sequencing data.
Author: H. Robert Frost
Maintainer: H. Robert Frost <rob.frost@dartmouth.edu>
Diff between VAM versions 1.0.0 dated 2021-09-07 and 1.1.0 dated 2023-11-05
DESCRIPTION | 6 +- MD5 | 38 ++++++------- NAMESPACE | 2 NEWS | 5 + R/SeuratWrapperForVAM.R | 49 +++++++++++++++-- build/vignette.rds |binary inst/doc/VAM_PBMC3K_Hallmark_LogNormalization.pdf |binary inst/doc/VAM_PBMC3K_LogNormalization.pdf |binary inst/doc/VAM_PBMC3K_SCTransform.pdf |binary inst/doc/VAM_pbmc_small.R | 20 +++--- inst/doc/VAM_pbmc_small.Rnw | 5 + inst/doc/VAM_pbmc_small.pdf |binary inst/doc/VAM_pbmc_small_sctransform.R | 4 - inst/doc/VAM_pbmc_small_sctransform.Rnw | 4 - inst/doc/VAM_pbmc_small_sctransform.pdf |binary vignettes/VAM_PBMC3K_Hallmark_LogNormalization_tmp.pdf |binary vignettes/VAM_PBMC3K_LogNormalization_tmp.pdf |binary vignettes/VAM_PBMC3K_SCTransform_tmp.pdf |binary vignettes/VAM_pbmc_small.Rnw | 5 + vignettes/VAM_pbmc_small_sctransform.Rnw | 4 - 20 files changed, 94 insertions(+), 48 deletions(-)
Title: Framework for Easy Statistical Modeling, Visualization, and
Reporting
Description: A meta-package that installs and loads a set of packages from
'easystats' ecosystem in a single step. This collection of packages provide
a unifying and consistent framework for statistical modeling, visualization,
and reporting. Additionally, it provides articles targeted at instructors for
teaching 'easystats', and a dashboard targeted at new R users for easily
conducting statistical analysis by accessing summary results, model fit indices,
and visualizations with minimal programming.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Brenton M. Wiernik [aut] ,
Etienne Bacher [aut] ,
Remi Theriault [aut]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between easystats versions 0.6.0 dated 2022-11-29 and 0.7.0 dated 2023-11-05
DESCRIPTION | 36 +++++---- LICENSE |only MD5 | 51 +++++++------ NEWS.md | 17 ++++ R/easystats_update.R | 7 - R/install_easystats.R | 20 ++--- R/install_suggested.R | 87 +++++++++++----------- R/model_dashboard.R | 74 ++++++++++--------- R/utils.R | 25 +++--- R/zzz.R | 25 ++++-- README.md | 15 +-- build/vignette.rds |binary inst/CITATION | 4 - inst/WORDLIST | 25 +++--- inst/doc/list_of_functions.R | 32 +++----- inst/doc/list_of_functions.Rmd | 32 +++----- inst/doc/list_of_functions.html | 146 ++++++++++++++++++++++++++++++-------- inst/templates/easydashboard.Rmd | 6 - man/easystats-package.Rd | 2 man/easystats_update.Rd | 4 - man/figures/depnetwork-1.png |binary man/figures/unnamed-chunk-7-1.png |binary man/install_latest.Rd | 20 ++--- man/install_suggested.Rd | 12 ++- man/model_dashboard.Rd | 73 +++++++++++-------- tests |only vignettes/list_of_functions.Rmd | 32 +++----- 27 files changed, 451 insertions(+), 294 deletions(-)
Title: Import and Export 'Familias' Files
Description: Tools for exchanging pedigree data between the 'pedsuite'
packages and the 'Familias' software for forensic kinship computations
(Egeland et al. (2000) <doi:10.1016/s0379-0738(00)00147-x>). These
functions were split out from the 'forrel' package to streamline
maintenance and provide a lightweight alternative for packages otherwise
independent of 'forrel'.
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedFamilias versions 0.1.1 dated 2023-10-25 and 0.2.0 dated 2023-11-05
DESCRIPTION | 10 ++-- MD5 | 14 +++--- NAMESPACE | 1 R/readFam.R | 120 +++++++++++++++++++++++++++++++++++--------------------- R/utils.R | 5 ++ R/writeFam.R | 21 ++++++--- man/readFam.Rd | 12 ++++- man/writeFam.Rd | 2 8 files changed, 117 insertions(+), 68 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-16 1.2-6
2020-04-17 1.2-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-02 1.0-2.1
2011-03-21 1.0-2
2009-10-26 1.0-1
2009-03-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-30 1.0-1
Title: Estimating and Mapping Disaggregated Indicators
Description: Functions that support estimating, assessing and mapping regional
disaggregated indicators. So far, estimation methods comprise direct estimation,
the model-based unit-level approach Empirical Best Prediction (see "Small area
estimation of poverty indicators" by Molina and Rao (2010) <doi:10.1002/cjs.10051>),
the area-level model (see "Estimates of income for small places: An
application of James-Stein procedures to Census Data" by Fay and Herriot (1979)
<doi:10.1080/01621459.1979.10482505>) and various extensions of it (adjusted variance
estimation methods, log and arcsin transformation, spatial, robust and measurement
error models), as well as their precision estimates. The assessment of the used model
is supported by a summary and diagnostic plots. For a suitable presentation of
estimates, map plots can be easily created. Furthermore, results can easily be
exported to excel. For a detailed description of the package and the methods used
see "The R Package emdi for Estima [...truncated...]
Author: Sylvia Harmening [aut],
Ann-Kristin Kreutzmann [aut],
Soeren Pannier [aut, cre],
Felix Skarke [aut],
Natalia Rojas-Perilla [aut],
Nicola Salvati [aut],
Timo Schmid [aut],
Matthias Templ [aut],
Nikos Tzavidis [aut],
Nora Wuerz [aut]
Maintainer: Soeren Pannier <soeren.pannier@fu-berlin.de>
Diff between emdi versions 2.2.0 dated 2023-10-31 and 2.2.1 dated 2023-11-05
emdi-2.2.0/emdi/man/benchmark.Rd |only emdi-2.2.1/emdi/DESCRIPTION | 12 - emdi-2.2.1/emdi/MD5 | 22 - emdi-2.2.1/emdi/NAMESPACE | 5 emdi-2.2.1/emdi/NEWS.md | 6 emdi-2.2.1/emdi/R/benchmark.R | 1 emdi-2.2.1/emdi/R/emdi.R | 2 emdi-2.2.1/emdi/R/load_shape.R | 9 emdi-2.2.1/emdi/R/map_plot.R | 255 ++++++++++------------ emdi-2.2.1/emdi/inst/shapes/shape_austria_dis.rda |binary emdi-2.2.1/emdi/man/benchmark_emdi.Rd |only emdi-2.2.1/emdi/man/load_shapeaustria.Rd | 4 emdi-2.2.1/emdi/man/map_plot.Rd | 20 - 13 files changed, 165 insertions(+), 171 deletions(-)
Title: Make 'Mirai' 'Promises'
Description: Allows 'mirai' objects encapsulating asynchronous computations,
from the 'mirai' package by Gao (2023) <doi:10.5281/zenodo.7912722>, to be
used interchangeably with 'promise' objects from the 'promises' package by
Cheng (2021) <https://CRAN.R-project.org/package=promises>. This facilitates
their use with packages 'plumber' by Schloerke and Allen (2022)
<https://CRAN.R-project.org/package=plumber> and 'shiny' by Cheng, Allaire,
Sievert, Schloerke, Xie, Allen, McPherson, Dipert and Borges (2022)
<https://CRAN.R-project.org/package=shiny>.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between mirai.promises versions 0.3.1 dated 2023-09-25 and 0.4.0 dated 2023-11-05
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NAMESPACE | 4 ++-- NEWS.md | 8 ++++++++ R/core.R | 10 +++++----- README.md | 34 +++++++++++++++++++++------------- tests/tests.R | 28 +++++++++++++++------------- 7 files changed, 63 insertions(+), 45 deletions(-)
More information about mirai.promises at CRAN
Permanent link
Title: Finding Files in Project Subdirectories
Description: Robust, reliable and flexible paths to files below
a project root. The 'root' of a project is defined as a directory that
matches a certain criterion, e.g., it contains a certain regular file.
Author: Kirill Mueller [aut, cre]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between rprojroot versions 2.0.3 dated 2022-04-02 and 2.0.4 dated 2023-11-05
DESCRIPTION | 14 MD5 | 25 - NAMESPACE | 2 NEWS.md | 18 - R/root.R | 24 + build/vignette.rds |binary inst/doc/rprojroot.R | 12 inst/doc/rprojroot.html | 755 +++++++++++++++++++++++++++++------------- man/criteria.Rd | 10 man/rprojroot-package.Rd | 2 tests/testthat/_snaps/root.md | 10 tests/testthat/setup.R |only tests/testthat/test-file.R | 56 +-- tests/testthat/test-root.R | 250 +++++++------ 14 files changed, 785 insertions(+), 393 deletions(-)
Title: Creating and Working with Pedigrees and Marker Data
Description: A comprehensive collection of tools for creating,
manipulating and visualising pedigrees and genetic marker data.
Pedigrees can be read from text files or created on the fly with
built-in functions. A range of utilities enable modifications like
adding or removing individuals, breaking loops, and merging pedigrees.
An online tool for creating pedigrees interactively, based on
'pedtools', is available at <https://magnusdv.shinyapps.io/quickped>.
'pedtools' is the hub of the 'pedsuite', a collection of packages for
pedigree analysis. A detailed presentation of the 'pedsuite' is given
in the book 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedtools versions 2.4.0 dated 2023-10-02 and 2.5.0 dated 2023-11-05
DESCRIPTION | 10 ++--- MD5 | 33 +++++++++-------- NAMESPACE | 3 + NEWS.md | 19 +++++++++ R/marker_select.R | 4 ++ R/marker_setattr.R | 78 +++++++++++++++++++++++++++++++++++++++-- R/ped_labels.R | 28 +++++++++++--- R/ped_mask.R |only R/ped_utils.R | 6 ++- R/plot_internal.R | 25 +++++++++++-- R/readPed.R | 11 +++++ inst/WORDLIST | 8 ++++ inst/doc/pedtools.html | 4 +- man/internalplot.Rd | 12 ++++-- man/marker_setattr.Rd | 9 ++++ man/maskPed.Rd |only man/readPed.Rd | 5 ++ man/relabel.Rd | 14 +++++-- tests/testthat/test-ped-mask.R |only 19 files changed, 223 insertions(+), 46 deletions(-)
Title: Augments 'ASReml-R' in Fitting Mixed Models and Packages
Generally in Exploring Prediction Differences
Description: Assists in automating the selection of terms to include in mixed models when
'asreml' is used to fit the models. Also used to display, in tables and graphs, predictions
obtained using any model fitting function and to explore differences between predictions.
The content falls into the following natural groupings: (i) Data, (ii) Object manipulation
functions, (iii) Model modification functions, (iv) Model selection functions, (v) Model
diagnostics and simulation functions, (vi) Prediction production and presentation
functions, (vii) Response transformation functions, and (viii) Miscellaneous functions
(for further details see 'asremlPlus-package' in help). A history of the fitting of a
sequence of models is kept in a data frame. Procedures are available for choosing models
that conform to the hierarchy or marginality principle, for fitting and choosing between
two-dimensional spatial models using correlation, natural cubic smoothing spline and
P-spline models, for displaying prediction [...truncated...]
Author: Chris Brien [aut, cre]
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between asremlPlus versions 4.4.15 dated 2023-10-02 and 4.4.21 dated 2023-11-05
asremlPlus-4.4.15/asremlPlus/R/REMLRTIC.v3.r |only asremlPlus-4.4.15/asremlPlus/R/psplineUtilities.R |only asremlPlus-4.4.15/asremlPlus/R/reml4.v8.r |only asremlPlus-4.4.15/asremlPlus/R/spatial.funcs.r |only asremlPlus-4.4.15/asremlPlus/R/variogram.faces.v5.r |only asremlPlus-4.4.21/asremlPlus/DESCRIPTION | 37 asremlPlus-4.4.21/asremlPlus/MD5 | 102 +- asremlPlus-4.4.21/asremlPlus/NAMESPACE | 1 asremlPlus-4.4.21/asremlPlus/R/REMLRTIC.v4.r |only asremlPlus-4.4.21/asremlPlus/R/asremlPlusUtilities.r | 103 ++ asremlPlus-4.4.21/asremlPlus/R/psplineUtilities.v2.R |only asremlPlus-4.4.21/asremlPlus/R/reml4.v10.r |only asremlPlus-4.4.21/asremlPlus/R/spatial.funcs.v7.r |only asremlPlus-4.4.21/asremlPlus/R/tpsmmb.v2.r | 5 asremlPlus-4.4.21/asremlPlus/R/variogram.faces.v7.r |only asremlPlus-4.4.21/asremlPlus/build/partial.rdb |binary asremlPlus-4.4.21/asremlPlus/inst/NEWS.Rd | 425 +++++----- asremlPlus-4.4.21/asremlPlus/inst/doc/Ladybird.asreml.pdf |binary asremlPlus-4.4.21/asremlPlus/inst/doc/Ladybird.lm.pdf |binary asremlPlus-4.4.21/asremlPlus/inst/doc/Wheat.analysis.pdf |binary asremlPlus-4.4.21/asremlPlus/inst/doc/Wheat.infoCriteria.pdf |binary asremlPlus-4.4.21/asremlPlus/inst/doc/WheatSpatialModels.pdf |binary asremlPlus-4.4.21/asremlPlus/inst/doc/asremlPlus-manual.pdf |binary asremlPlus-4.4.21/asremlPlus/man/LSD.frame.Rd | 20 asremlPlus-4.4.21/asremlPlus/man/addSpatialModel.asrtests.Rd | 75 + asremlPlus-4.4.21/asremlPlus/man/addSpatialModelOnIC.asrtests.Rd | 79 + asremlPlus-4.4.21/asremlPlus/man/alldiffs.object.Rd | 4 asremlPlus-4.4.21/asremlPlus/man/angular.mod.Rd | 3 asremlPlus-4.4.21/asremlPlus/man/asremlPlus-package.Rd | 27 asremlPlus-4.4.21/asremlPlus/man/changeModelOnIC.asrtests.Rd | 2 asremlPlus-4.4.21/asremlPlus/man/chooseSpatialModelOnIC.asrtests.Rd | 105 +- asremlPlus-4.4.21/asremlPlus/man/makeTPPSplineMats.data.frame.Rd | 6 asremlPlus-4.4.21/asremlPlus/man/plotLSDs.alldiffs.Rd | 2 asremlPlus-4.4.21/asremlPlus/man/plotPvalues.alldiffs.Rd | 2 asremlPlus-4.4.21/asremlPlus/man/variofaces.asreml.Rd | 18 asremlPlus-4.4.21/asremlPlus/tests/testthat/data/ChickpeaEnd.dat.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/Exp355.Control.dat.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/MET.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/PSA.27.dat.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/Ricecart.dat.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/Smarthouse.dat.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/barley.dat.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/cart.dat.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/chkpeadat.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/gw.dat.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/indv703.dat.rda |only asremlPlus-4.4.21/asremlPlus/tests/testthat/data/local851.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/longit.dat.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/orange.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/sPSA.DASTs.dat.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/data/summ703.rda |only asremlPlus-4.4.21/asremlPlus/tests/testthat/data/wheat94.dat.rda |binary asremlPlus-4.4.21/asremlPlus/tests/testthat/test42GeneticCane.R | 6 asremlPlus-4.4.21/asremlPlus/tests/testthat/test42REMLRTIC.r | 16 asremlPlus-4.4.21/asremlPlus/tests/testthat/test42Selection.r | 27 asremlPlus-4.4.21/asremlPlus/tests/testthat/test42SpatialModels.r | 130 ++- asremlPlus-4.4.21/asremlPlus/tests/testthat/test42WheatSpatialVignette.r | 23 asremlPlus-4.4.21/asremlPlus/tests/testthat/test42WheatVignette.r | 72 + 58 files changed, 823 insertions(+), 467 deletions(-)
Title: Data Cleaning for Psychological Analyses
Description: Useful for preparing and cleaning data. It includes functions to center data, reverse coding, dummy code and effect code data, and more.
Author: Jason Moy [aut, cre]
Maintainer: Jason Moy <jason.moyhj@gmail.com>
Diff between psycCleaning versions 0.1.0 dated 2023-11-03 and 0.1.1 dated 2023-11-05
psycCleaning-0.1.0/psycCleaning/R/archive_z_scored_group_mean.R |only psycCleaning-0.1.0/psycCleaning/tests/testthat/test-center-grand-mean.R |only psycCleaning-0.1.1/psycCleaning/DESCRIPTION | 8 +-- psycCleaning-0.1.1/psycCleaning/MD5 | 14 +++--- psycCleaning-0.1.1/psycCleaning/NAMESPACE | 1 psycCleaning-0.1.1/psycCleaning/NEWS.md | 2 psycCleaning-0.1.1/psycCleaning/R/z_scored_group_mean.R |only psycCleaning-0.1.1/psycCleaning/README.md | 22 +++++++--- psycCleaning-0.1.1/psycCleaning/man/z_scored_group_mean.Rd | 11 ++--- psycCleaning-0.1.1/psycCleaning/tests/testthat/test-centering.R |only 10 files changed, 37 insertions(+), 21 deletions(-)
Title: Linear Mixed-Effects Models using 'Eigen' and S4
Description: Fit linear and generalized linear mixed-effects models.
The models and their components are represented using S4 classes and
methods. The core computational algorithms are implemented using the
'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".
Author: Douglas Bates [aut] ,
Martin Maechler [aut] ,
Ben Bolker [aut, cre] ,
Steven Walker [aut] ,
Rune Haubo Bojesen Christensen [ctb]
,
Henrik Singmann [ctb] ,
Bin Dai [ctb],
Fabian Scheipl [ctb] ,
Gabor Grothendieck [ctb],
Peter Green [ctb] ,
John Fox [c [...truncated...]
Maintainer: Ben Bolker <bbolker+lme4@gmail.com>
Diff between lme4 versions 1.1-35 dated 2023-11-03 and 1.1-35.1 dated 2023-11-05
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/lmer.R | 10 ++++++++++ R/modular.R | 3 --- inst/NEWS.Rd | 11 ++++++++++- inst/doc/PLSvGLS.pdf |binary inst/doc/Theory.pdf |binary inst/doc/lmer.pdf |binary tests/testthat/test-lmer.R | 8 +++++++- 9 files changed, 39 insertions(+), 17 deletions(-)
Title: Bayesian Change-Point Detection for Process Monitoring with
Fault Detection
Description: Bayes Watch fits an array of Gaussian Graphical Mixture Models to groupings of homogeneous data in time, called regimes, which are modeled as the observed states of a Markov process with unknown transition probabilities. In doing so, Bayes Watch defines a posterior distribution on a vector of regime assignments, which gives meaningful expressions on the probability of every possible change-point. Bayes Watch also allows for an effective and efficient fault detection system that assesses what features in the data where the most responsible for a given change-point. For further details, see: Alexander C. Murph et al. (2023) <arXiv:2310.02940>.
Author: Alexander C. Murph [aut, cre] ,
Reza Mohammadi [ctb, cph] ,
Alex Lenkoski [ctb, cph]
Maintainer: Alexander C. Murph <murph290@gmail.com>
Diff between bayesWatch versions 0.1.0 dated 2023-10-23 and 0.1.1 dated 2023-11-05
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ src/DRJ_MCMC_Step.cpp | 1 - src/RcppExports.cpp | 1 + src/draw_latent_data.cpp | 1 - src/mixture_redraw_functions.cpp | 1 - src/util.h | 2 +- 7 files changed, 12 insertions(+), 14 deletions(-)
Title: Project MOSAIC Data Sets
Description: Data sets from Project MOSAIC (<http://www.mosaic-web.org>) used
to teach mathematics, statistics, computation and modeling. Funded by the
NSF, Project MOSAIC is a community of educators working to tie together
aspects of quantitative work that students in science, technology,
engineering and mathematics will need in their professional lives, but
which are usually taught in isolation, if at all.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel Kaplan
<kaplan@macalester.edu>, Nicholas Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between mosaicData versions 0.20.3 dated 2022-09-01 and 0.20.4 dated 2023-11-05
DESCRIPTION | 10 MD5 | 72 - R/BirthsDoc.R | 51 R/DimesDoc.R | 12 R/GoosePermitsDoc.R | 40 R/SaratogaHousesDoc.R | 16 R/Weather.R | 10 R/datasetsDoc.R | 2589 +++++++++++++++++++++++++------------------------- README.md | 2 data/Gestation.rda |binary man/Alcohol.Rd | 8 man/Birthdays.Rd | 19 man/Births.Rd | 33 man/CPS85.Rd | 24 man/CoolingWater.Rd | 6 man/Countries.Rd | 8 man/Dimes.Rd | 2 man/Galton.Rd | 14 man/Gestation.Rd | 47 man/GoosePermits.Rd | 14 man/HELPfull.Rd | 1578 +++++++++++++++--------------- man/HELPmiss.Rd | 58 - man/HELPrct.Rd | 58 - man/HeatX.Rd | 24 man/KidsFeet.Rd | 18 man/Marriage.Rd | 32 man/Mites.Rd | 6 man/RailTrail.Rd | 24 man/SAT.Rd | 22 man/SaratogaHouses.Rd | 2 man/SnowGR.Rd | 44 man/SwimRecords.Rd | 10 man/TenMileRace.Rd | 14 man/Utilities.Rd | 26 man/Utilities2.Rd | 40 man/Weather.Rd | 8 man/Whickham.Rd | 8 37 files changed, 2478 insertions(+), 2471 deletions(-)
Title: Fast Polygon to Raster Conversion
Description: Provides a drop-in replacement for rasterize() from the 'raster'
package that takes polygon vector or data frame objects, and is much faster.
There is support for the main options provided by the rasterize() function,
including setting the field used and background value, and options for
aggregating multi-layer rasters. Uses the scan line algorithm attributed to
Wylie et al. (1967) <doi:10.1145/1465611.1465619>.
Author: Noam Ross [aut] ,
Michael Sumner [cre, ctb] ,
Jeroen Ooms [ctb],
Antoine Stevens [ctb],
EcoHealth Alliance [cph],
USAID PREDICT [fnd]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between fasterize versions 1.0.4 dated 2022-12-06 and 1.0.5 dated 2023-11-05
fasterize-1.0.4/fasterize/man/raster-sf-method.Rd |only fasterize-1.0.5/fasterize/DESCRIPTION | 25 - fasterize-1.0.5/fasterize/MD5 | 43 - fasterize-1.0.5/fasterize/NAMESPACE | 10 fasterize-1.0.5/fasterize/NEWS.md | 15 fasterize-1.0.5/fasterize/R/RcppExports.R | 55 -- fasterize-1.0.5/fasterize/R/fasterize.R |only fasterize-1.0.5/fasterize/R/package.R | 17 fasterize-1.0.5/fasterize/R/raster-methods.R | 46 - fasterize-1.0.5/fasterize/build/partial.rdb |binary fasterize-1.0.5/fasterize/build/vignette.rds |binary fasterize-1.0.5/fasterize/inst/WORDLIST | 13 fasterize-1.0.5/fasterize/inst/doc/using-fasterize.Rmd | 18 fasterize-1.0.5/fasterize/inst/doc/using-fasterize.html | 238 +++++----- fasterize-1.0.5/fasterize/man/fasterize-package.Rd |only fasterize-1.0.5/fasterize/man/fasterize.Rd | 22 fasterize-1.0.5/fasterize/man/raster.Rd |only fasterize-1.0.5/fasterize/src/RcppExports.cpp | 10 fasterize-1.0.5/fasterize/src/check_inputs.cpp | 2 fasterize-1.0.5/fasterize/src/fasterize.cpp | 53 -- fasterize-1.0.5/fasterize/tests/spelling.Rout.save |only fasterize-1.0.5/fasterize/tests/testthat/test-01-inputcheck.R | 34 + fasterize-1.0.5/fasterize/tests/testthat/test-02-fasterize.R | 3 fasterize-1.0.5/fasterize/tests/testthat/test-05-by.R | 5 fasterize-1.0.5/fasterize/vignettes/using-fasterize.Rmd | 18 25 files changed, 286 insertions(+), 341 deletions(-)