Title: Easily Apply Formats to Data
Description: Contains a set of functions that can be used to apply
formats to data frames or vectors. The package aims to provide
functionality similar to that of SAS® formats. Formats are assigned to
the format attribute on data frame columns. Then when the fdata()
function is called, a new data frame is created with the column data
formatted as specified. The package also contains a value() function
to create a user-defined format, similar to a SAS® user-defined format.
Author: David Bosak
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between fmtr versions 1.6.0 dated 2023-09-10 and 1.6.2 dated 2023-11-09
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- NEWS.md | 4 ++++ R/fapply.R | 15 +++++++++++---- R/fmt.R | 11 ++++++++++- R/fmtr.R | 12 ++++++------ README.md | 2 +- inst/doc/fmtr-convenience.html | 4 ++-- inst/doc/fmtr-fapply.html | 4 ++-- inst/doc/fmtr-fcat.html | 4 ++-- inst/doc/fmtr-fdata.html | 4 ++-- inst/doc/fmtr-helpers.html | 4 ++-- man/fapply.Rd | 8 ++++---- man/fmtr.Rd | 12 ++++++------ man/value.Rd | 6 +++++- tests/testthat/test-fcat.R | 25 +++++++++++++++++++++++++ tests/testthat/test-fmt.R | 40 ++++++++++++++++++++++++++++++++++++++++ 17 files changed, 142 insertions(+), 53 deletions(-)
Title: Transform Files to 'microtable' Object with 'microeco' Package
Description: Transform output files of some tools to the 'microtable' object of 'microtable' class in 'microeco' package. The 'microtable' class is the basic class in 'microeco' package and is necessary for the downstream microbial community data analysis.
Author: Chi Liu [aut, cre]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between file2meco versions 0.6.0 dated 2023-05-05 and 0.7.0 dated 2023-11-09
DESCRIPTION | 9 +++--- MD5 | 25 +++++++++-------- R/data.R | 12 +++++++- R/humann2meco.R | 52 +++++++++++++++++++----------------- R/import.R | 2 - R/mpa2meco.R | 7 ++-- R/ncyc2meco.R | 50 +++++++++++++++++++++++++++------- R/qiime2meco.R | 26 ++++++++++-------- data/pcyc_map.RData |only inst/extdata/example_Pcyc_table.tsv |only man/humann2meco.Rd | 12 ++++---- man/ncyc2meco.Rd | 28 +++++++++++++++---- man/ncyc_map.Rd | 2 - man/pcyc_map.Rd |only man/qiime2meco.Rd | 24 +++++++++------- 15 files changed, 162 insertions(+), 87 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'SQLite' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcsqlite versions 0.7.0.1 dated 2023-10-11 and 0.8.0 dated 2023-11-09
DESCRIPTION | 6 MD5 | 17 +- NEWS.md | 11 + configure | 13 ++ src/common/utils.c | 21 +-- src/sqlite.c | 196 ++++++++++++++++++++++++------- src/statement_reader.c | 117 ++++++++++++++++-- src/types.h | 4 tests/testthat/test-adbcsqlite-package.R | 6 tools/test_extension.c |only 10 files changed, 316 insertions(+), 75 deletions(-)
Title: Self-Attention Algorithm
Description: Self-Attention algorithm helper functions and demonstration vignettes of increasing depth on how to construct the Self-Attention algorithm, this is based on Vaswani et al. (2017) <doi:10.48550/arXiv.1706.03762>, Dan Jurafsky and James H. Martin (2022, ISBN:978-0131873216) <https://web.stanford.edu/~jurafsky/slp3/> "Speech and Language Processing (3rd ed.)" and Alex Graves (2020) <https://www.youtube.com/watch?v=AIiwuClvH6k> "Attention and Memory in Deep Learning".
Author: Bastiaan Quast [aut, cre]
Maintainer: Bastiaan Quast <bquast@gmail.com>
Diff between attention versions 0.3.0 dated 2023-04-23 and 0.4.0 dated 2023-11-09
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- README.md | 2 +- build/vignette.rds |binary inst/doc/complete_attention.R | 2 +- inst/doc/simple_attention.R | 2 +- 6 files changed, 11 insertions(+), 11 deletions(-)
Title: Provides a 'PySpark' Back-End for the 'sparklyr' Package
Description: It enables 'sparklyr' to integrate with 'Spark Connect', and
'Databricks Connect' by providing a wrapper over the 'PySpark' 'python'
library.
Author: Edgar Ruiz [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Edgar Ruiz <edgar@posit.co>
Diff between pysparklyr versions 0.1.0 dated 2023-10-04 and 0.1.1 dated 2023-11-09
pysparklyr-0.1.0/pysparklyr/tests/testthat/_snaps/spark-pyobj.md |only pysparklyr-0.1.1/pysparklyr/DESCRIPTION | 12 pysparklyr-0.1.1/pysparklyr/MD5 | 37 - pysparklyr-0.1.1/pysparklyr/NAMESPACE | 4 pysparklyr-0.1.1/pysparklyr/NEWS.md | 34 + pysparklyr-0.1.1/pysparklyr/R/connections-pane.R | 157 ++--- pysparklyr-0.1.1/pysparklyr/R/dplyr.R | 2 pysparklyr-0.1.1/pysparklyr/R/import-check.R | 98 +-- pysparklyr-0.1.1/pysparklyr/R/install.R | 106 +++ pysparklyr-0.1.1/pysparklyr/R/package.R | 4 pysparklyr-0.1.1/pysparklyr/R/spark-connect.R | 301 ++++++---- pysparklyr-0.1.1/pysparklyr/R/utils.R | 6 pysparklyr-0.1.1/pysparklyr/README.md | 2 pysparklyr-0.1.1/pysparklyr/man/install_pyspark.Rd | 5 pysparklyr-0.1.1/pysparklyr/tests/testthat.R | 1 pysparklyr-0.1.1/pysparklyr/tests/testthat/_snaps/compat-sparklyr.md |only pysparklyr-0.1.1/pysparklyr/tests/testthat/test-compat-sparklyr.R |only pysparklyr-0.1.1/pysparklyr/tests/testthat/test-connections-pane.R | 11 pysparklyr-0.1.1/pysparklyr/tests/testthat/test-install.R | 12 pysparklyr-0.1.1/pysparklyr/tests/testthat/test-spark-connect.R | 20 pysparklyr-0.1.1/pysparklyr/tests/testthat/test-spark-pyobj.R | 5 21 files changed, 539 insertions(+), 278 deletions(-)
Title: Simplify 'ggplot2' Visualisation
Description: Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions.
Author: David Hodge [aut, cre, cph] ,
Nik Mitchell [ctb]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggblanket versions 5.1.0 dated 2023-09-19 and 5.2.0 dated 2023-11-09
ggblanket-5.1.0/ggblanket/man/pal_blue.Rd |only ggblanket-5.1.0/ggblanket/man/pal_discrete.Rd |only ggblanket-5.1.0/ggblanket/man/pal_discrete2.Rd |only ggblanket-5.1.0/ggblanket/man/pal_grey.Rd |only ggblanket-5.1.0/ggblanket/vignettes/screenshot_autotab_y.png |only ggblanket-5.2.0/ggblanket/DESCRIPTION | 18 ggblanket-5.2.0/ggblanket/MD5 | 175 +- ggblanket-5.2.0/ggblanket/NAMESPACE | 8 ggblanket-5.2.0/ggblanket/NEWS.md | 17 ggblanket-5.2.0/ggblanket/R/gg_area.R | 631 +++++-- ggblanket-5.2.0/ggblanket/R/gg_bar.R | 630 +++++-- ggblanket-5.2.0/ggblanket/R/gg_bin_2d.R | 632 +++++-- ggblanket-5.2.0/ggblanket/R/gg_blank.R | 653 +++++--- ggblanket-5.2.0/ggblanket/R/gg_boxplot.R | 630 +++++-- ggblanket-5.2.0/ggblanket/R/gg_col.R | 631 +++++-- ggblanket-5.2.0/ggblanket/R/gg_contour.R | 632 +++++-- ggblanket-5.2.0/ggblanket/R/gg_contour_filled.R | 631 +++++-- ggblanket-5.2.0/ggblanket/R/gg_crossbar.R | 631 +++++-- ggblanket-5.2.0/ggblanket/R/gg_density.R | 630 +++++-- ggblanket-5.2.0/ggblanket/R/gg_density_2d.R | 631 +++++-- ggblanket-5.2.0/ggblanket/R/gg_density_2d_filled.R | 630 +++++-- ggblanket-5.2.0/ggblanket/R/gg_errorbar.R | 633 +++++-- ggblanket-5.2.0/ggblanket/R/gg_freqpoly.R | 638 +++++-- ggblanket-5.2.0/ggblanket/R/gg_hex.R | 632 +++++-- ggblanket-5.2.0/ggblanket/R/gg_histogram.R | 630 +++++-- ggblanket-5.2.0/ggblanket/R/gg_jitter.R | 632 +++++-- ggblanket-5.2.0/ggblanket/R/gg_label.R | 633 +++++-- ggblanket-5.2.0/ggblanket/R/gg_line.R | 633 +++++-- ggblanket-5.2.0/ggblanket/R/gg_linerange.R | 633 +++++-- ggblanket-5.2.0/ggblanket/R/gg_path.R | 632 +++++-- ggblanket-5.2.0/ggblanket/R/gg_point.R | 632 +++++-- ggblanket-5.2.0/ggblanket/R/gg_pointrange.R | 632 +++++-- ggblanket-5.2.0/ggblanket/R/gg_polygon.R | 634 +++++-- ggblanket-5.2.0/ggblanket/R/gg_qq.R | 678 +++++--- ggblanket-5.2.0/ggblanket/R/gg_raster.R | 633 +++++-- ggblanket-5.2.0/ggblanket/R/gg_rect.R | 632 +++++-- ggblanket-5.2.0/ggblanket/R/gg_ribbon.R | 634 +++++-- ggblanket-5.2.0/ggblanket/R/gg_segment.R | 633 +++++-- ggblanket-5.2.0/ggblanket/R/gg_sf.R | 688 +++++--- ggblanket-5.2.0/ggblanket/R/gg_smooth.R | 630 +++++-- ggblanket-5.2.0/ggblanket/R/gg_step.R | 633 +++++-- ggblanket-5.2.0/ggblanket/R/gg_text.R | 635 +++++-- ggblanket-5.2.0/ggblanket/R/gg_tile.R | 635 +++++-- ggblanket-5.2.0/ggblanket/R/gg_violin.R | 630 +++++-- ggblanket-5.2.0/ggblanket/R/ggblanket-package.R | 3 ggblanket-5.2.0/ggblanket/R/pal.R | 91 - ggblanket-5.2.0/ggblanket/R/str_keep_seq.R | 12 ggblanket-5.2.0/ggblanket/README.md | 20 ggblanket-5.2.0/ggblanket/inst/doc/ggblanket.R | 264 +-- ggblanket-5.2.0/ggblanket/inst/doc/ggblanket.Rmd | 375 ++-- ggblanket-5.2.0/ggblanket/inst/doc/ggblanket.html | 894 +++++------ ggblanket-5.2.0/ggblanket/man/gg_area.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_bar.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_bin_2d.Rd | 7 ggblanket-5.2.0/ggblanket/man/gg_blank.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_boxplot.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_col.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_contour.Rd | 2 ggblanket-5.2.0/ggblanket/man/gg_contour_filled.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_crossbar.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_density.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_density_2d.Rd | 2 ggblanket-5.2.0/ggblanket/man/gg_density_2d_filled.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_errorbar.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_freqpoly.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_hex.Rd | 7 ggblanket-5.2.0/ggblanket/man/gg_histogram.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_jitter.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_label.Rd | 7 ggblanket-5.2.0/ggblanket/man/gg_line.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_linerange.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_path.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_point.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_pointrange.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_polygon.Rd | 9 ggblanket-5.2.0/ggblanket/man/gg_qq.Rd | 34 ggblanket-5.2.0/ggblanket/man/gg_raster.Rd | 8 ggblanket-5.2.0/ggblanket/man/gg_rect.Rd | 7 ggblanket-5.2.0/ggblanket/man/gg_ribbon.Rd | 9 ggblanket-5.2.0/ggblanket/man/gg_segment.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_sf.Rd | 37 ggblanket-5.2.0/ggblanket/man/gg_smooth.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_step.Rd | 5 ggblanket-5.2.0/ggblanket/man/gg_text.Rd | 7 ggblanket-5.2.0/ggblanket/man/gg_tile.Rd | 9 ggblanket-5.2.0/ggblanket/man/gg_violin.Rd | 5 ggblanket-5.2.0/ggblanket/man/guardian.Rd |only ggblanket-5.2.0/ggblanket/man/pal_dark_mode.Rd | 5 ggblanket-5.2.0/ggblanket/man/pal_light_mode.Rd | 5 ggblanket-5.2.0/ggblanket/man/str_keep_seq.Rd | 2 ggblanket-5.2.0/ggblanket/vignettes/autocomplete_y.png |only ggblanket-5.2.0/ggblanket/vignettes/ggblanket.Rmd | 375 ++-- 92 files changed, 16083 insertions(+), 8683 deletions(-)
Title: Practical Numerical Math Functions
Description: Provides a large number of functions from numerical analysis and
linear algebra, numerical optimization, differential equations,
time series, plus some well-known special mathematical functions.
Uses 'MATLAB' function names where appropriate to simplify porting.
Author: Hans W. Borchers [aut, cre]
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between pracma versions 2.4.2 dated 2022-09-22 and 2.4.4 dated 2023-11-09
DESCRIPTION | 13 +++++-------- MD5 | 26 ++++++++++++++------------ NEWS | 11 +++++++++++ NEWS.md | 11 +++++++++++ R/modular.R | 8 ++++++++ R/neldermead.R | 2 +- R/stereographic.R |only data/brown72.rda |binary data/titanium.rda |binary man/arnoldi.Rd | 2 +- man/findpeaks.Rd | 2 +- man/histc.Rd | 2 +- man/linearproj.Rd | 5 +++-- man/neldermead.Rd | 5 ++--- man/stereographic.Rd |only 15 files changed, 58 insertions(+), 29 deletions(-)
Title: Computation and Visualization of Package Download Counts and
Percentiles
Description: Compute and visualize the cross-sectional and longitudinal number
and rank percentile of package downloads from Posit/RStudio's CRAN mirror.
Author: Peter Li [aut, cre]
Maintainer: Peter Li <lindbrook@gmail.com>
Diff between packageRank versions 0.8.2 dated 2023-10-10 and 0.8.3 dated 2023-11-09
DESCRIPTION | 15 -- MD5 | 10 - NEWS.md | 17 ++ R/cranDownloads.R | 4 R/fixCranlogs.R | 45 +----- README.md | 391 +++++++++++++++++++++++------------------------------- 6 files changed, 214 insertions(+), 268 deletions(-)
Title: Project MOSAIC Statistics and Mathematics Teaching Utilities
Description: Data sets and utilities from Project MOSAIC (<http://www.mosaic-web.org>) used
to teach mathematics, statistics, computation and modeling. Funded by the
NSF, Project MOSAIC is a community of educators working to tie together
aspects of quantitative work that students in science, technology,
engineering and mathematics will need in their professional lives, but
which are usually taught in isolation, if at all.
Author: Randall Pruim [aut, cre],
Daniel T. Kaplan [aut],
Nicholas J. Horton [aut]
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between mosaic versions 1.8.4.2 dated 2022-09-20 and 1.9.0 dated 2023-11-09
DESCRIPTION | 19 MD5 | 351 NAMESPACE | 4 NEWS.md | 7 R/CIsim.R | 14 R/Clustering.R | 34 R/Mustangs.R | 8 R/Sleep.R | 6 R/aggregatingAux.R | 6 R/aggregatingMeta.R | 2 R/bargraph.R | 4 R/cdist.R | 32 R/chisq.R | 2 R/confint.R | 14 R/do.R | 4 R/dotPlot.R | 7 R/dpqrdist.R | 44 R/frequencyPolygon.R | 6 R/mPlots.R | 28 R/maps2.R | 30 R/mosaic-package.R | 3 R/mplot.R | 60 R/plotModel.R | 47 R/pqrdata.R | 2 R/resample.R | 10 R/rescale.R | 2 R/rgeo.R | 8 R/statTally.R | 12 R/swap.R | 4 R/value.R | 6 R/xpnorm.R | 32 R/xqqmath.R | 2 R/zscore.R | 6 README.md | 2 inst/CITATION | 2 inst/doc/MinimalRgg.pdf |binary inst/doc/Resampling.Rmd | 2 inst/doc/Resampling.html | 780 inst/doc/mosaic-resources.html | 117 inst/rmarkdown/templates/mosaic-shiny/skeleton/skeleton.Rmd | 4 man/CIAdata.Rd | 8 man/CIsim.Rd | 8 man/Mustangs.Rd | 8 man/Sleep.Rd | 6 man/aggregating.Rd | 2 man/bargraph.Rd | 2 man/cdist.Rd | 4 man/chisq.Rd | 2 man/clustering.Rd | 10 man/cnorm.Rd | 2 man/confint.Rd | 4 man/design_plot.Rd | 2 man/leaflet_map.Rd | 2 man/mUSMap.Rd | 2 man/mWorldMap.Rd | 2 man/mplot.Rd | 26 man/plotModel.Rd | 25 man/relm.Rd | 2 man/resample.Rd | 4 man/sp2df.Rd | 10 man/swap.Rd | 4 man/themes.Rd | 2 man/value.Rd | 6 man/xpnorm.Rd | 4 man/xqqmath.Rd | 2 man/zscore.Rd | 6 tests/testthat/Rplots.pdf |only tests/testthat/_snaps/ashplots/ashplots1.svg | 18 tests/testthat/_snaps/bargraph/bargraph1.svg | 8 tests/testthat/_snaps/bargraph/bargraph2.svg | 8 tests/testthat/_snaps/bargraph/bargraph3.svg | 132 tests/testthat/_snaps/bargraph/bargraph4.svg | 74 tests/testthat/_snaps/bargraph/bargraph5.svg | 20 tests/testthat/_snaps/clustering/clustering1.svg | 520 tests/testthat/_snaps/clustering/clustering2.svg | 520 tests/testthat/_snaps/clustering/clustering3.svg | 520 tests/testthat/_snaps/dotplot/dotplot1.svg | 906 - tests/testthat/_snaps/dotplot/dotplot2.svg | 906 - tests/testthat/_snaps/dotplot/dotplot3.svg | 486 tests/testthat/_snaps/fitspline/fitspline1.svg | 30 tests/testthat/_snaps/fitspline/fitspline2.svg | 32 tests/testthat/_snaps/fitspline/fitspline3.svg | 35 tests/testthat/_snaps/fitspline/fitspline4.svg | 36 tests/testthat/_snaps/frequencyPolygon/firstexample.svg | 18 tests/testthat/_snaps/frequencyPolygon/fourthexample.svg | 18 tests/testthat/_snaps/frequencyPolygon/secondexample.svg | 2 tests/testthat/_snaps/frequencyPolygon/thirdexample.svg | 18 tests/testthat/_snaps/ladd/ladd1.svg | 18 tests/testthat/_snaps/ladd/ladd2.svg | 18 tests/testthat/_snaps/ladd/ladd3.svg | 18 tests/testthat/_snaps/ladd/ladd4.svg | 18 tests/testthat/_snaps/ladd/ladd5.svg | 210 tests/testthat/_snaps/ladd/ladd6.svg | 210 tests/testthat/_snaps/ladd/ladd7.svg | 210 tests/testthat/_snaps/ladd/ladd8.svg | 210 tests/testthat/_snaps/ladd/ladd9.svg | 2940 +-- tests/testthat/_snaps/maps2/usmaps1.svg | 532 tests/testthat/_snaps/mplot/mplot1.svg | 10 tests/testthat/_snaps/mplot/mplot2.svg | 10 tests/testthat/_snaps/mplot/mplot3.svg | 10 tests/testthat/_snaps/mplot/mplot4.svg | 6 tests/testthat/_snaps/mplot/mplot5.svg | 6 tests/testthat/_snaps/mplot/mplot6.svg | 6 tests/testthat/_snaps/mplot/mplot7.svg | 8 tests/testthat/_snaps/mplot/mplot8.svg | 4 tests/testthat/_snaps/plotCumfreq/plotcumfreq1.svg | 2 tests/testthat/_snaps/plotDist/plotdist1.svg | 2 tests/testthat/_snaps/plotDist/plotdist10.svg | 2 tests/testthat/_snaps/plotDist/plotdist11.svg | 76 tests/testthat/_snaps/plotDist/plotdist12.svg | 76 tests/testthat/_snaps/plotDist/plotdist15.svg | 138 tests/testthat/_snaps/plotDist/plotdist16.svg |10000 +++++------ tests/testthat/_snaps/plotDist/plotdist17.svg | 2 tests/testthat/_snaps/plotDist/plotdist18.svg | 2 tests/testthat/_snaps/plotDist/plotdist19.svg | 2 tests/testthat/_snaps/plotDist/plotdist2.svg |10000 +++++------ tests/testthat/_snaps/plotDist/plotdist3.svg | 2 tests/testthat/_snaps/plotDist/plotdist4.svg | 26 tests/testthat/_snaps/plotDist/plotdist5.svg | 64 tests/testthat/_snaps/plotDist/plotdist6.svg | 64 tests/testthat/_snaps/plotDist/plotdist7.svg | 2 tests/testthat/_snaps/plotDist/plotdist8.svg |10032 ++++++------ tests/testthat/_snaps/plotDist/plotdist9.svg | 2 tests/testthat/_snaps/plotPoints/plotpoints1.svg | 78 tests/testthat/_snaps/plotPoints/plotpoints2.svg | 78 tests/testthat/_snaps/plotPoints/plotpoints3.svg | 80 tests/testthat/_snaps/statTally/stattally1.svg | 30 tests/testthat/_snaps/statTally/stattally2.svg | 72 tests/testthat/_snaps/statTally/stattally3.svg | 30 tests/testthat/_snaps/xpnorm/xpnorm1.svg | 12 tests/testthat/_snaps/xpnorm/xpnorm2.svg | 12 tests/testthat/test-adaptSeq.R | 6 tests/testthat/test-aggregating.R | 114 tests/testthat/test-as.xtabs.R | 4 tests/testthat/test-ashplots.R | 2 tests/testthat/test-bargraph.R | 4 tests/testthat/test-binomtest.R | 50 tests/testthat/test-cdist.R | 18 tests/testthat/test-chisq.R | 8 tests/testthat/test-clustering.R | 12 tests/testthat/test-confint.R | 2 tests/testthat/test-corTest.R | 6 tests/testthat/test-cross.R | 8 tests/testthat/test-derivedFactor.R | 16 tests/testthat/test-do.R | 26 tests/testthat/test-dotplot.R | 2 tests/testthat/test-dpqrdist.R | 30 tests/testthat/test-environments.R | 12 tests/testthat/test-expandfun.R | 4 tests/testthat/test-factorize.R | 8 tests/testthat/test-favstats.R | 26 tests/testthat/test-findZeros.R | 22 tests/testthat/test-fitModel.R | 6 tests/testthat/test-fitspline.R | 18 tests/testthat/test-frequencyPolygon.R | 2 tests/testthat/test-is.wholenumber.R | 2 tests/testthat/test-ladd.R | 2 tests/testthat/test-linearAlgebra.R | 30 tests/testthat/test-maps2.R | 8 tests/testthat/test-mplot.R | 10 tests/testthat/test-oddsRatio.R | 10 tests/testthat/test-plotCumfreq.R | 2 tests/testthat/test-plotDist.R | 2 tests/testthat/test-plotModel.R | 2 tests/testthat/test-plotPoints.R | 2 tests/testthat/test-pqrdata.R | 26 tests/testthat/test-proptest.R | 36 tests/testthat/test-rand.R | 6 tests/testthat/test-read.file.R | 6 tests/testthat/test-resample.R | 18 tests/testthat/test-rfun.R | 2 tests/testthat/test-rgeo.R | 8 tests/testthat/test-smoothers.R | 10 tests/testthat/test-statTally.R | 2 tests/testthat/test-ttest.R | 30 tests/testthat/test-xpnorm.R | 6 vignettes/Resampling.Rmd | 2 177 files changed, 21101 insertions(+), 21042 deletions(-)
Title: Graphical Interface for Loading Datasets
Description: Graphical interface for loading datasets in RStudio from all installed (including unloaded) packages, also includes command line interfaces.
Author: Bastiaan quast [aut, cre]
Maintainer: Bastiaan quast <bquast@gmail.com>
Diff between datasets.load versions 2.2.0 dated 2023-04-21 and 2.3.0 dated 2023-11-09
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- tests/testthat/test-datasets.load.R | 2 ++ 3 files changed, 8 insertions(+), 6 deletions(-)
Title: Predictive (Classification and Regression) Models Homologator
Description: Methods to unify the different ways of creating predictive models and their different predictive formats for classification and regression. It includes
methods such as K-Nearest Neighbors Schliep, K. P. (2004) <doi:10.5282/ubm/epub.1769>, Decision Trees Leo Breiman, Jerome H. Friedman, Richard A. Olshen, Charles J. Stone (2017) <doi:10.1201/9781315139470>,
ADA Boosting Esteban Alfaro, Matias Gamez, Noelia García (2013) <doi:10.18637/jss.v054.i02>, Extreme Gradient Boosting Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>,
Random Forest Breiman (2001) <doi:10.1023/A:1010933404324>, Neural Networks Venables, W. N., & Ripley, B. D. (2002) <ISBN:0-387-95457-0>,
Support Vector Machines Bennett, K. P. & Campbell, C. (2000) <doi:10.1145/380995.380999>, Bayesian Methods Gelman, A., Carlin, J. B., Stern, H. S., & Rubin, D. B. (1995) <doi:10.1201/9780429258411>,
Linear Discriminant Analysis Venables, W. N., & Ripley, B. D. ( [...truncated...]
Author: Oldemar Rodriguez R. [aut, cre],
Andres Navarro D. [aut],
Ariel Arroyo S. [aut],
Diego Jimenez A. [aut]
Maintainer: Oldemar Rodriguez R. <oldemar.rodriguez@ucr.ac.cr>
Diff between traineR versions 2.1.0 dated 2023-10-09 and 2.2.0 dated 2023-11-09
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NAMESPACE | 1 + R/Utilities.R | 21 +++++++++++++++++++++ R/train.R | 2 ++ R/traineR.R | 4 ++-- man/scaler.Rd |only man/traineR.Rd | 4 ++-- 8 files changed, 38 insertions(+), 13 deletions(-)
Title: Conversion of R Regression Output to LaTeX or HTML Tables
Description: Converts coefficients, standard errors, significance stars, and goodness-of-fit statistics of statistical models into LaTeX tables or HTML tables/MS Word documents or to nicely formatted screen output for the R console for easy model comparison. A list of several models can be combined in a single table. The output is highly customizable. New model types can be easily implemented. Details can be found in Leifeld (2013), JStatSoft <doi:10.18637/jss.v055.i08>. (If the Zelig package, which this package enhances, cannot be found on CRAN, you can find it at <https://github.com/IQSS/Zelig>. If the mnlogit package, which this package enhances, cannot be found on CRAN, you can find an old version in the CRAN Archive at <https://cran.r-project.org/src/contrib/Archive/mnlogit/>.)
Author: Philip Leifeld [aut, cre],
Claudia Zucca [ctb]
Maintainer: Philip Leifeld <philip.leifeld@essex.ac.uk>
Diff between texreg versions 1.38.6 dated 2022-04-06 and 1.39.3 dated 2023-11-09
DESCRIPTION | 22 ++-- MD5 | 23 ++--- R/extract.R | 95 +++++++++++++++++++- R/texreg.R | 4 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 25 ++--- inst/doc/texreg.pdf |binary man/extract-logitr-method.Rd |only tests/testthat/test-extract.R | 173 +++++++++++++++++++++++++++----------- tests/testthat/test-huxtablereg.R | 15 +++ tests/testthat/test-praise.R | 6 - tests/testthat/test-texreg.R | 18 +++ 13 files changed, 287 insertions(+), 94 deletions(-)
Title: Quick Wraps 2
Description: A collection of (wrapper) functions the creator found useful
for quickly placing data summaries and formatted regression results into
'.Rnw' or '.Rmd' files. Functions for generating commonly used graphics,
such as receiver operating curves or Bland-Altman plots, are also provided
by 'qwraps2'. 'qwraps2' is a updated version of a package 'qwraps'. The
original version 'qwraps' was never submitted to CRAN but can be found at
<https://github.com/dewittpe/qwraps/>. The implementation and limited scope
of the functions within 'qwraps2' <https://github.com/dewittpe/qwraps2/> is
fundamentally different from 'qwraps'.
Author: Peter DeWitt [aut, cre] ,
Tell Bennett [ctb]
Maintainer: Peter DeWitt <dewittpe@gmail.com>
Diff between qwraps2 versions 0.5.2 dated 2021-03-07 and 0.6.0 dated 2023-11-09
qwraps2-0.5.2/qwraps2/R/qwraps2.R |only qwraps2-0.5.2/qwraps2/inst/doc/summary-statistics.R |only qwraps2-0.5.2/qwraps2/inst/doc/summary-statistics.Rmd |only qwraps2-0.5.2/qwraps2/inst/doc/summary-statistics.html |only qwraps2-0.5.2/qwraps2/man/geometric_mean_var_sd.Rd |only qwraps2-0.5.2/qwraps2/man/qroc.Rd |only qwraps2-0.5.2/qwraps2/man/qwraps2.Rd |only qwraps2-0.5.2/qwraps2/tests/testthat |only qwraps2-0.5.2/qwraps2/tests/testthat.R |only qwraps2-0.5.2/qwraps2/vignettes/summary-statistics.Rmd |only qwraps2-0.6.0/qwraps2/DESCRIPTION | 20 qwraps2-0.6.0/qwraps2/MD5 | 193 +- qwraps2-0.6.0/qwraps2/NAMESPACE | 46 qwraps2-0.6.0/qwraps2/NEWS.md | 62 qwraps2-0.6.0/qwraps2/R/confusion_matrix.R | 511 ++--- qwraps2-0.6.0/qwraps2/R/datasets.R | 66 qwraps2-0.6.0/qwraps2/R/deprecated.R | 401 ---- qwraps2-0.6.0/qwraps2/R/file-check.R | 151 + qwraps2-0.6.0/qwraps2/R/frmt.R | 71 qwraps2-0.6.0/qwraps2/R/geometric_mean_sd.R | 21 qwraps2-0.6.0/qwraps2/R/ggplot2_tools.R | 48 qwraps2-0.6.0/qwraps2/R/gmean_sd.R |only qwraps2-0.6.0/qwraps2/R/lazyload_cache.R | 89 - qwraps2-0.6.0/qwraps2/R/ll.R | 31 qwraps2-0.6.0/qwraps2/R/mean_ci.R | 8 qwraps2-0.6.0/qwraps2/R/mean_sd.R | 91 - qwraps2-0.6.0/qwraps2/R/mean_se.R |only qwraps2-0.6.0/qwraps2/R/median_iqr.R | 21 qwraps2-0.6.0/qwraps2/R/n_perc.R | 63 qwraps2-0.6.0/qwraps2/R/package_checks.R | 29 qwraps2-0.6.0/qwraps2/R/qable.R | 180 +- qwraps2-0.6.0/qwraps2/R/qacf.R | 43 qwraps2-0.6.0/qwraps2/R/qblandaltman.R | 14 qwraps2-0.6.0/qwraps2/R/qkmplot.R | 142 + qwraps2-0.6.0/qwraps2/R/qroc.R | 169 + qwraps2-0.6.0/qwraps2/R/qwraps2-package.R |only qwraps2-0.6.0/qwraps2/R/set_diff.R | 21 qwraps2-0.6.0/qwraps2/R/spin.R | 12 qwraps2-0.6.0/qwraps2/R/stat-stepribbon.R | 2 qwraps2-0.6.0/qwraps2/R/summary_table.R | 118 - qwraps2-0.6.0/qwraps2/R/utilities.R |only qwraps2-0.6.0/qwraps2/build/vignette.rds |binary qwraps2-0.6.0/qwraps2/data/mtcars2.rda |binary qwraps2-0.6.0/qwraps2/data/pefr.rda |binary qwraps2-0.6.0/qwraps2/data/spambase.rda |only qwraps2-0.6.0/qwraps2/inst/WORDLIST | 20 qwraps2-0.6.0/qwraps2/inst/doc/qwraps2-data-sets.R | 33 qwraps2-0.6.0/qwraps2/inst/doc/qwraps2-data-sets.Rmd | 94 - qwraps2-0.6.0/qwraps2/inst/doc/qwraps2-data-sets.html | 649 +++++-- qwraps2-0.6.0/qwraps2/inst/doc/qwraps2-formatted-summary-statistics.R |only qwraps2-0.6.0/qwraps2/inst/doc/qwraps2-formatted-summary-statistics.Rmd |only qwraps2-0.6.0/qwraps2/inst/doc/qwraps2-formatted-summary-statistics.html |only qwraps2-0.6.0/qwraps2/inst/doc/qwraps2-graphics.R | 175 +- qwraps2-0.6.0/qwraps2/inst/doc/qwraps2-graphics.Rmd | 282 ++- qwraps2-0.6.0/qwraps2/inst/doc/qwraps2-graphics.html | 856 ++++++---- qwraps2-0.6.0/qwraps2/inst/doc/qwraps2-summary-table.R |only qwraps2-0.6.0/qwraps2/inst/doc/qwraps2-summary-table.Rmd |only qwraps2-0.6.0/qwraps2/inst/doc/qwraps2-summary-table.html |only qwraps2-0.6.0/qwraps2/inst/examples/spinner2.R |only qwraps2-0.6.0/qwraps2/inst/spambase |only qwraps2-0.6.0/qwraps2/man/backtick.Rd | 8 qwraps2-0.6.0/qwraps2/man/confusion_matrix.Rd | 186 -- qwraps2-0.6.0/qwraps2/man/deprecated.Rd | 95 - qwraps2-0.6.0/qwraps2/man/file_check.Rd | 114 + qwraps2-0.6.0/qwraps2/man/frmt.Rd | 33 qwraps2-0.6.0/qwraps2/man/ggplot2_tools.Rd | 18 qwraps2-0.6.0/qwraps2/man/gmean.Rd |only qwraps2-0.6.0/qwraps2/man/gmean_sd.Rd |only qwraps2-0.6.0/qwraps2/man/lazyload_cache.Rd | 84 qwraps2-0.6.0/qwraps2/man/ll.Rd | 28 qwraps2-0.6.0/qwraps2/man/mean_sd.Rd | 27 qwraps2-0.6.0/qwraps2/man/mean_se.Rd |only qwraps2-0.6.0/qwraps2/man/median_iqr.Rd | 5 qwraps2-0.6.0/qwraps2/man/mtcars2.Rd | 24 qwraps2-0.6.0/qwraps2/man/n_perc.Rd | 12 qwraps2-0.6.0/qwraps2/man/pefr.Rd | 24 qwraps2-0.6.0/qwraps2/man/pkg_check.Rd | 24 qwraps2-0.6.0/qwraps2/man/qable.Rd | 54 qwraps2-0.6.0/qwraps2/man/qacf.Rd | 34 qwraps2-0.6.0/qwraps2/man/qblandaltman.Rd | 7 qwraps2-0.6.0/qwraps2/man/qkmplot.Rd | 42 qwraps2-0.6.0/qwraps2/man/qroc-qprc.Rd |only qwraps2-0.6.0/qwraps2/man/qwraps2-package.Rd |only qwraps2-0.6.0/qwraps2/man/qwraps2-utilities.Rd |only qwraps2-0.6.0/qwraps2/man/set_diff.Rd | 19 qwraps2-0.6.0/qwraps2/man/spambase.Rd |only qwraps2-0.6.0/qwraps2/man/stat_stepribbon.Rd | 16 qwraps2-0.6.0/qwraps2/man/summary_table.Rd | 42 qwraps2-0.6.0/qwraps2/src/RcppExports.cpp | 5 qwraps2-0.6.0/qwraps2/src/traprule.cpp | 8 qwraps2-0.6.0/qwraps2/tests/test-confusion_matrix.R |only qwraps2-0.6.0/qwraps2/tests/test-datasets.R |only qwraps2-0.6.0/qwraps2/tests/test-extract.R |only qwraps2-0.6.0/qwraps2/tests/test-file-check.R |only qwraps2-0.6.0/qwraps2/tests/test-frmt.R |only qwraps2-0.6.0/qwraps2/tests/test-frmtp.R |only qwraps2-0.6.0/qwraps2/tests/test-gmean_sd.R |only qwraps2-0.6.0/qwraps2/tests/test-lazyload.R |only qwraps2-0.6.0/qwraps2/tests/test-ll.R |only qwraps2-0.6.0/qwraps2/tests/test-logit.R |only qwraps2-0.6.0/qwraps2/tests/test-mean_ci.R |only qwraps2-0.6.0/qwraps2/tests/test-mean_sd.R |only qwraps2-0.6.0/qwraps2/tests/test-mean_se.R |only qwraps2-0.6.0/qwraps2/tests/test-median_iqr.R |only qwraps2-0.6.0/qwraps2/tests/test-n_perc.R |only qwraps2-0.6.0/qwraps2/tests/test-pkg_check.R |only qwraps2-0.6.0/qwraps2/tests/test-plots.R |only qwraps2-0.6.0/qwraps2/tests/test-qable.R |only qwraps2-0.6.0/qwraps2/tests/test-qkplot.R |only qwraps2-0.6.0/qwraps2/tests/test-qroc.R |only qwraps2-0.6.0/qwraps2/tests/test-set_diff.R |only qwraps2-0.6.0/qwraps2/tests/test-spin_comments.R |only qwraps2-0.6.0/qwraps2/tests/test-summary_table.R |only qwraps2-0.6.0/qwraps2/tests/test-traprule.R |only qwraps2-0.6.0/qwraps2/tests/test-utilities.R |only qwraps2-0.6.0/qwraps2/vignettes/qwraps2-data-sets.Rmd | 94 - qwraps2-0.6.0/qwraps2/vignettes/qwraps2-formatted-summary-statistics.Rmd |only qwraps2-0.6.0/qwraps2/vignettes/qwraps2-graphics.Rmd | 282 ++- qwraps2-0.6.0/qwraps2/vignettes/qwraps2-summary-table.Rmd |only qwraps2-0.6.0/qwraps2/vignettes/references.bib | 8 120 files changed, 3774 insertions(+), 2251 deletions(-)
Title: Segment Images in Text Lines and Words
Description: Find text lines in scanned images and segment the lines into words.
Includes implementations of the paper 'Novel A* Path Planning Algorithm for Line Segmentation of Handwritten Documents' by Surinta O. et al (2014) <doi:10.1109/ICFHR.2014.37> available at <https://github.com/smeucci/LineSegm>,
an implementation of 'A Statistical approach to line segmentation in handwritten documents' by Arivazhagan M. et al (2007) <doi:10.1117/12.704538>,
and a wrapper for an image segmentation technique to detect words in text lines as described in the paper 'Scale Space Technique for Word Segmentation in Handwritten Documents' by Manmatha R. and Srimal N. (1999) paper at <doi:10.1007/3-540-48236-9_3>, wrapper for code available at <https://github.com/arthurflor23/text-segmentation>.
Provides as well functionality to put cursive text in images upright using the approach defined in the paper 'A new normalization technique for cursive handwritten words' by Vinciarelli A. a [...truncated...]
Author: Jan Wijffels [aut, cre, cph] ,
Vrije Universiteit Brussel - DIGI: Brussels Platform for Digital
Humanities [cph] ,
Jeroen Ooms [ctb, cph] ,
Arthur Flor [ctb, cph] ,
Saverio Meucci [ctb, cph] ,
Yeara Kozlov [ctb, cph] ,
Tino Weinkauf [ctb, cph] ,
Hara [...truncated...]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between image.textlinedetector versions 0.2.2 dated 2022-10-17 and 0.2.3 dated 2023-11-09
image.textlinedetector-0.2.2/image.textlinedetector/src/Makevars.ucrt |only image.textlinedetector-0.2.3/image.textlinedetector/DESCRIPTION | 6 image.textlinedetector-0.2.3/image.textlinedetector/LICENSE | 2 image.textlinedetector-0.2.3/image.textlinedetector/LICENSE.note | 234 ++--- image.textlinedetector-0.2.3/image.textlinedetector/MD5 | 37 image.textlinedetector-0.2.3/image.textlinedetector/NAMESPACE | 28 image.textlinedetector-0.2.3/image.textlinedetector/NEWS.md | 87 + image.textlinedetector-0.2.3/image.textlinedetector/R/RcppExports.R | 118 +- image.textlinedetector-0.2.3/image.textlinedetector/R/deslant.R | 136 +- image.textlinedetector-0.2.3/image.textlinedetector/R/pkg.R | 10 image.textlinedetector-0.2.3/image.textlinedetector/R/textlinedetector.R | 456 +++++----- image.textlinedetector-0.2.3/image.textlinedetector/README.md | 184 ++-- image.textlinedetector-0.2.3/image.textlinedetector/configure | 2 image.textlinedetector-0.2.3/image.textlinedetector/man/image_textlines_astar.Rd | 122 +- image.textlinedetector-0.2.3/image.textlinedetector/man/image_textlines_crop.Rd | 2 image.textlinedetector-0.2.3/image.textlinedetector/man/image_textlines_flor.Rd | 2 image.textlinedetector-0.2.3/image.textlinedetector/man/image_wordsegmentation.Rd | 2 image.textlinedetector-0.2.3/image.textlinedetector/man/ocv_deslant.Rd | 108 +- image.textlinedetector-0.2.3/image.textlinedetector/src/Makevars.win | 17 image.textlinedetector-0.2.3/image.textlinedetector/tools/winlibs.R | 29 20 files changed, 805 insertions(+), 777 deletions(-)
More information about image.textlinedetector at CRAN
Permanent link
Title: Required 'libphonenumber' jars for the 'dialr' Package
Description: Collects 'libphonenumber' jars required for the
'dialr' package.
Author: Danny Smith [aut, cre],
Google Inc. [ctb, cph] ,
Vonage Holdings Corp. [ctb, cph] ,
Ian Galpin [ctb, cph] ,
Ben Gertzfield [ctb, cph]
Maintainer: Danny Smith <danny@gorcha.org>
Diff between dialrjars versions 8.13.2 dated 2022-12-07 and 8.13.25 dated 2023-11-09
dialrjars-8.13.2/dialrjars/inst/java/carrier-1.186.jar |only dialrjars-8.13.2/dialrjars/inst/java/geocoder-2.196.jar |only dialrjars-8.13.2/dialrjars/inst/java/libphonenumber-8.13.2.jar |only dialrjars-8.13.2/dialrjars/inst/java/prefixmapper-2.196.jar |only dialrjars-8.13.25/dialrjars/DESCRIPTION | 8 dialrjars-8.13.25/dialrjars/MD5 | 16 dialrjars-8.13.25/dialrjars/NEWS.md | 230 ++++++++++ dialrjars-8.13.25/dialrjars/README.md | 56 +- dialrjars-8.13.25/dialrjars/inst/java/carrier-1.209.jar |only dialrjars-8.13.25/dialrjars/inst/java/geocoder-2.219.jar |only dialrjars-8.13.25/dialrjars/inst/java/libphonenumber-8.13.25.jar |only dialrjars-8.13.25/dialrjars/inst/java/prefixmapper-2.219.jar |only dialrjars-8.13.25/dialrjars/man/dialrjars-package.Rd | 3 13 files changed, 271 insertions(+), 42 deletions(-)
Title: Additive Profile Clustering Algorithms
Description: Obtain overlapping clustering models for object-by-variable data
matrices using the Additive Profile Clustering (ADPROCLUS) method.
Also contains the low dimensional ADPROCLUS method
for simultaneous dimension reduction and overlapping clustering.
For reference see Depril, Van Mechelen, Mirkin (2008)
<doi:10.1016/j.csda.2008.04.014> and Depril, Van Mechelen, Wilderjans
(2012) <doi:10.1007/s00357-012-9112-5>.
Author: Henry Heppe [aut, cre, cph],
Julian Rossbroich [aut],
Jeffrey Durieux [aut],
Tom Wilderjans [aut]
Maintainer: Henry Heppe <heppe.henry@gmail.com>
Diff between adproclus versions 1.0.1 dated 2023-11-07 and 1.0.2 dated 2023-11-09
DESCRIPTION | 8 +++--- MD5 | 14 +++++----- NEWS.md | 6 +++- R/visualize.R | 2 - man/adproclus-package.Rd | 8 ++++++ tests/testthat/test-adproclus_classes.R | 20 +++++++-------- tests/testthat/test-clustering.R | 41 ++++++++++++++++++++------------ tests/testthat/test-visualize.R | 14 +++++++--- 8 files changed, 71 insertions(+), 42 deletions(-)
Title: Phylogenetic Tools for Comparative Biology (and Other Things)
Description: A wide range of methods for phylogenetic analysis - concentrated in phylogenetic comparative biology, but also including numerous techniques for visualizing, analyzing, manipulating, reading or writing, and even inferring phylogenetic trees. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, and simulation of phylogenies and trait data. A broad range of plotting methods for phylogenies and comparative data include (but are not restricted to) methods for mapping trait evolution on trees, for projecting trees into phenotype space or a onto a geographic map, and for visualizing correlated speciation between trees. Lastly, numerous functions are designed for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data. For instance, there are functions for computing consensus phylogenies from a set, for simulating phylogenetic trees and data under a range of models, [...truncated...]
Author: Liam J. Revell
Maintainer: Liam J. Revell <liam.revell@umb.edu>
Diff between phytools versions 1.9-16 dated 2023-07-14 and 2.0-3 dated 2023-11-09
DESCRIPTION | 14 ++++----- MD5 | 43 +++++++++++++++------------- NAMESPACE | 14 +++++++-- R/asr.R | 3 + R/cophylo.R | 6 +++ R/fitpolyMk.R | 36 ++++++++++++++--------- R/ltt.R | 29 ++++++++++++++++-- R/make.simmap.R | 30 +++++-------------- R/phyl.pca.R | 21 +++++++++++++ R/phylo.to.map.R | 75 ++++++++++++++++++++++++++++++++++++++++++------- R/plotrix_fn.R |only R/utilities.R | 14 +++++---- data/datalist | 2 + data/tortoise.geog.rda |only data/tortoise.tree.rda |only man/ancr.Rd | 4 +- man/anoletree.Rd | 10 ++++++ man/bmPlot.Rd | 2 - man/collapseTree.Rd | 6 ++- man/fitMk.Rd | 2 - man/ltt.Rd | 10 +++--- man/phyl.pca.Rd | 10 +++--- man/phylo.to.map.Rd | 15 +++++++++ man/plotThresh.Rd | 2 - 24 files changed, 247 insertions(+), 101 deletions(-)
Title: API Client for the 'ClimMob' Platform
Description: API client for 'ClimMob', an open source software for decentralized
large-N trials with the 'tricot' approach <https://climmob.net/>.
Developed by van Etten et al. (2016) <doi:10.1017/S0014479716000739>, it turns the
research paradigm on its head; instead of a few researchers designing complicated
trials to compare several technologies in search of the best solutions for the
target environment, it enables many participants to carry out reasonably simple
experiments that taken together can offer even more information. 'ClimMobTools'
enables project managers to deep explore and analyse their 'ClimMob' data in R.
Author: Kaue de Sousa [aut, cre] ,
Jacob van Etten [aut] ,
Brandon Madriz [aut]
Maintainer: Kaue de Sousa <desousa.kaue@gmail.com>
Diff between ClimMobTools versions 0.6 dated 2023-01-06 and 1.0 dated 2023-11-09
ClimMobTools-0.6/ClimMobTools/R/randomise.R |only ClimMobTools-0.6/ClimMobTools/man/randomise.Rd |only ClimMobTools-1.0/ClimMobTools/DESCRIPTION | 15 ClimMobTools-1.0/ClimMobTools/MD5 | 37 - ClimMobTools-1.0/ClimMobTools/NAMESPACE | 2 ClimMobTools-1.0/ClimMobTools/NEWS.md | 8 ClimMobTools-1.0/ClimMobTools/R/AAA-getDataCM.R | 17 ClimMobTools-1.0/ClimMobTools/R/getProjectProgress.R | 11 ClimMobTools-1.0/ClimMobTools/R/getProjectsCM.R | 4 ClimMobTools-1.0/ClimMobTools/R/randomize.R |only ClimMobTools-1.0/ClimMobTools/R/rankTricot.R | 340 +++++++--------- ClimMobTools-1.0/ClimMobTools/build/vignette.rds |binary ClimMobTools-1.0/ClimMobTools/inst/CITATION |only ClimMobTools-1.0/ClimMobTools/inst/doc/Overview.R | 96 ++-- ClimMobTools-1.0/ClimMobTools/inst/doc/Overview.Rmd | 25 - ClimMobTools-1.0/ClimMobTools/inst/doc/Overview.html | 111 ++++- ClimMobTools-1.0/ClimMobTools/man/getDataCM.Rd | 17 ClimMobTools-1.0/ClimMobTools/man/getProjectProgress.Rd | 11 ClimMobTools-1.0/ClimMobTools/man/getProjectsCM.Rd | 4 ClimMobTools-1.0/ClimMobTools/man/randomize.Rd |only ClimMobTools-1.0/ClimMobTools/man/rankTricot.Rd | 19 ClimMobTools-1.0/ClimMobTools/vignettes/Overview.Rmd | 25 - 22 files changed, 418 insertions(+), 324 deletions(-)
Title: Read and Write SMET Files
Description: Simple class to hold contents of a SMET file as specified in
Bavay (2021) <https://code.wsl.ch/snow-models/meteoio/-/blob/master/doc/SMET_specifications.pdf>.
There numerical meteorological measurements are all based on MKS (SI) units
and timestamp is standardized to UTC time.
Author: Reinhold Koch [aut, cre, cph]
Maintainer: Reinhold Koch <rei@reinholdkoch.com>
Diff between smetlite versions 0.2.9 dated 2023-06-28 and 0.2.10 dated 2023-11-09
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ README.md | 4 ++-- 4 files changed, 14 insertions(+), 9 deletions(-)
Title: Creates Log Files
Description: Contains functions to help create log files. The
package aims to overcome the difficulty of the base R sink() command. The
log_print() function will print to both the console and the file log,
without interfering in other write operations.
Author: David Bosak [aut, cre],
Rikard Isaksson [ctb]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between logr versions 1.3.4 dated 2023-06-25 and 1.3.5 dated 2023-11-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/logr.R | 13 ++++++++++--- build/vignette.rds |binary man/logr.Rd | 1 + 6 files changed, 25 insertions(+), 12 deletions(-)
Title: Blind Review Using Forward Search Procedures
Description: Randomly assigns identification to one of the variables of the dataset, say
Treatment, and assigns random numbers to all the observations of the dataset.
Reorders the observations according to the random numbers, and then runs the
appropriate forward search function on the blinded dataset. A file is created
from which the user can identify any outliers using the graphics function in
this package. Centers each fixed coefficient at the grand mean prior to
graphing in order to further mask the treatment. An unmasking function is
provided so that the user can identify the potential outliers in terms of their
original values when blinding is no longer needed. Details of the forward search
functions may be found in <https://CRAN.R-project.org/package=forsearch>.
Author: William Fairweather [aut, cre]
Maintainer: William Fairweather <wrf343@flowervalleyconsulting.com>
Diff between blindreview versions 1.3.0 dated 2023-09-14 and 1.3.1 dated 2023-11-09
DESCRIPTION | 24 ++++++----- MD5 | 16 +++---- NEWS.md | 16 +++++++ R/brMask.R | 31 +++++++-------- R/plotdiag.blind.all.R | 22 ++++------ R/plotdiag.blind.fixed.R | 90 +++++++++++++++----------------------------- man/brMask.Rd | 34 +++++++--------- man/plotdiag.blind.fixed.Rd | 5 -- man/unmask.Rd | 14 +++--- 9 files changed, 117 insertions(+), 135 deletions(-)
Title: Statistical Analysis of Textual Data
Description: Provides a set of functions devoted to multivariate exploratory statistics on textual data. Classical methods such as correspondence analysis and agglomerative hierarchical clustering are available. Chronologically constrained agglomerative hierarchical clustering enriched with labelled-by-words trees is offered. Given a division of the corpus into parts, their characteristic words and documents are identified. Further, accessing to 'FactoMineR' functions is very easy. Two of them are relevant in textual domain. MFA() addresses multiple lexical table allowing applications such as dealing with multilingual corpora as well as simultaneously analyzing both open-ended and closed questions in surveys. See <http://xplortext.unileon.es> for examples.
Author: Monica Becue-Bertaut, Ramon Alvarez-Esteban, Josep-Anton Sanchez-Espigares, Belchin Kostov
Maintainer: Ramon Alvarez-Esteban <ramon.alvarez@unileon.es>
Diff between Xplortext versions 1.5.2 dated 2023-04-24 and 1.5.3 dated 2023-11-09
DESCRIPTION | 8 ++--- MD5 | 14 ++++---- R/LexGalt.R | 75 +++++++++++++++++++++++------------------------ R/plot.LexGalt.R | 33 ++++++++------------ build/partial.rdb |binary inst/CITATION | 2 - inst/Xplortext.pdf |binary man/Xplortext-package.Rd | 4 +- 8 files changed, 65 insertions(+), 71 deletions(-)
Title: Analyze and Visualize Data from 'Microsoft Viva Insights'
Description: Provides a versatile range of functions, including exploratory data analysis, time-series analysis, organizational network analysis, and data validation, whilst at the same time implements a set of best practices in analyzing and visualizing data specific to 'Microsoft Viva Insights'.
Author: Martin Chan [aut, cre],
Carlos Morales [aut]
Maintainer: Martin Chan <martin.chan@microsoft.com>
Diff between vivainsights versions 0.4.3 dated 2023-11-01 and 0.5.0 dated 2023-11-09
DESCRIPTION | 6 +++--- MD5 | 23 ++++++++++++++--------- NAMESPACE | 2 ++ NEWS.md | 4 ++++ R/IV_report.R |only R/create_IV.R |only R/globals.R | 7 ++++++- man/IV_report.Rd |only man/create_IV.Rd |only man/generate_report.Rd | 1 + man/meeting_tm_report.Rd | 1 + man/read_preamble.Rd | 1 + man/validation_report.Rd | 1 + tests/testthat.R | 24 ++++++++++++------------ tests/testthat/test_create_IV.R |only 15 files changed, 45 insertions(+), 25 deletions(-)
Title: Sparse Vector Field Consensus for Vector Field Learning
Description: The sparse vector field consensus
(SparseVFC) algorithm (Ma et al., 2013 <doi:10.1016/j.patcog.2013.05.017>) for robust vector
field learning. Largely translated from the Matlab functions in <https://github.com/jiayi-ma/VFC>.
Author: Jingmeng Cui [aut, cre]
Maintainer: Jingmeng Cui <jingmeng.cui@outlook.com>
Diff between SparseVFC versions 0.1.1 dated 2023-02-15 and 0.1.2 dated 2023-11-09
DESCRIPTION | 10 +-- MD5 | 16 ++--- NEWS.md | 5 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/demo.R | 8 +- inst/doc/demo.Rmd | 6 - inst/doc/demo.html | 166 ++++++++++++++++++++++++++--------------------------- vignettes/demo.Rmd | 6 - 9 files changed, 112 insertions(+), 105 deletions(-)
Title: Pin, Discover and Share Resources
Description: Publish data sets, models, and other R objects, making it
easy to share them across projects and with your colleagues. You can
pin objects to a variety of "boards", including local folders (to
share on a networked drive or with 'DropBox'), 'RStudio' connect,
Amazon S3, and more.
Author: Julia Silge [cre, aut] ,
Hadley Wickham [aut] ,
Javier Luraschi [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Julia Silge <julia.silge@posit.co>
Diff between pins versions 1.2.2 dated 2023-09-09 and 1.3.0 dated 2023-11-09
pins-1.2.2/pins/R/ui_viewer.R |only pins-1.2.2/pins/man/pin_preview.Rd |only pins-1.3.0/pins/DESCRIPTION | 10 pins-1.3.0/pins/MD5 | 96 +- pins-1.3.0/pins/NAMESPACE | 2 pins-1.3.0/pins/NEWS.md | 15 pins-1.3.0/pins/R/board.R | 1 pins-1.3.0/pins/R/board_connect.R | 42 - pins-1.3.0/pins/R/board_connect_bundle.R | 2 pins-1.3.0/pins/R/meta.R | 4 pins-1.3.0/pins/R/pin-meta.R | 13 pins-1.3.0/pins/R/pin-read-write.R | 13 pins-1.3.0/pins/R/pin_versions.R | 6 pins-1.3.0/pins/README.md | 6 pins-1.3.0/pins/build/vignette.rds |binary pins-1.3.0/pins/inst/doc/customize-pins-metadata.R | 2 pins-1.3.0/pins/inst/doc/customize-pins-metadata.html | 193 ++--- pins-1.3.0/pins/inst/doc/managing-custom-formats.R | 2 pins-1.3.0/pins/inst/doc/managing-custom-formats.html | 223 ++--- pins-1.3.0/pins/inst/doc/pins-update.R | 4 pins-1.3.0/pins/inst/doc/pins-update.html | 281 +++---- pins-1.3.0/pins/inst/doc/pins.R | 14 pins-1.3.0/pins/inst/doc/pins.html | 379 +++++----- pins-1.3.0/pins/inst/doc/posit-connect.R | 2 pins-1.3.0/pins/inst/doc/posit-connect.html | 227 ++--- pins-1.3.0/pins/inst/doc/using-board-url.R | 2 pins-1.3.0/pins/inst/doc/using-board-url.html | 225 ++--- pins-1.3.0/pins/inst/preview/index.html | 7 pins-1.3.0/pins/man/board_connect.Rd | 13 pins-1.3.0/pins/man/figures/lifecycle-superseded.svg | 2 pins-1.3.0/pins/man/figures/logo.png |binary pins-1.3.0/pins/man/pin_meta.Rd | 1 pins-1.3.0/pins/man/pin_read.Rd | 6 pins-1.3.0/pins/man/pin_versions.Rd | 4 pins-1.3.0/pins/tests/testthat/_snaps/board_azure_adls2.md | 16 pins-1.3.0/pins/tests/testthat/_snaps/board_azure_blob.md | 16 pins-1.3.0/pins/tests/testthat/_snaps/board_azure_file.md | 16 pins-1.3.0/pins/tests/testthat/_snaps/board_connect.md | 20 pins-1.3.0/pins/tests/testthat/_snaps/board_connect_bundle.md | 14 pins-1.3.0/pins/tests/testthat/_snaps/board_folder.md | 8 pins-1.3.0/pins/tests/testthat/_snaps/board_gcs.md | 8 pins-1.3.0/pins/tests/testthat/_snaps/board_gdrive.md | 8 pins-1.3.0/pins/tests/testthat/_snaps/board_s3.md | 8 pins-1.3.0/pins/tests/testthat/_snaps/meta.md | 3 pins-1.3.0/pins/tests/testthat/_snaps/pin-read-write.md | 20 pins-1.3.0/pins/tests/testthat/_snaps/pin_versions.md | 8 pins-1.3.0/pins/tests/testthat/test-board_connect.R | 2 pins-1.3.0/pins/tests/testthat/test-board_connect_bundle.R | 3 pins-1.3.0/pins/tests/testthat/test-pin-read-write.R | 6 pins-1.3.0/pins/tests/testthat/test-pin_versions.R | 9 50 files changed, 936 insertions(+), 1026 deletions(-)
Title: Asymptotic Classification Theory for Cognitive Diagnosis
Description: Cluster analysis for cognitive diagnosis based on the Asymptotic Classification Theory (Chiu, Douglas & Li, 2009; <doi:10.1007/s11336-009-9125-0>). Given the sample statistic of sum-scores, cluster analysis techniques can be used to classify examinees into latent classes based on their attribute patterns. In addition to the algorithms used to classify data, three labeling approaches are proposed to label clusters so that examinees' attribute profiles can be obtained.
Author: Chia-Yi Chiu and Wenchao Ma
Maintainer: Wenchao Ma <wenchao.ma@ua.edu>
Diff between ACTCD versions 1.2-0 dated 2018-04-23 and 1.3-0 dated 2023-11-09
ACTCD-1.2-0/ACTCD/src/ACTCD_init.c |only ACTCD-1.3-0/ACTCD/DESCRIPTION | 12 +++++------- ACTCD-1.3-0/ACTCD/MD5 | 6 +++--- ACTCD-1.3-0/ACTCD/man/ACTCD-package.Rd | 9 +-------- ACTCD-1.3-0/ACTCD/src/init.c |only 5 files changed, 9 insertions(+), 18 deletions(-)
Title: Time Series Prediction Integrated Tuning
Description: Prediction is one of the most important activities while working with time series. There are many alternative ways to model the time series. Finding the right one is challenging to model them. Most data-driven models (either statistical or machine learning) demand tuning. Setting them right is mandatory for good predictions. It is even more complex since time series prediction also demands choosing a data pre-processing that complies with the chosen model. Many time series frameworks have features to build and tune models. The package differs as it provides a framework that seamlessly integrates tuning data pre-processing activities with the building of models. The package provides functions for defining and conducting time series prediction, including data pre(post)processing, decomposition, tuning, modeling, prediction, and accuracy assessment. More information is available at Izau et al. <doi:10.5753/sbbd.2022.224330>.
Author: Rebecca Salles [aut],
Cristiane Gea [aut],
Vitoria Birindiba [aut],
Carla Pacheco [aut],
Eduardo Bezerra [aut],
Esther Pacitti [aut],
Fabio Porto [aut],
Eduardo Ogasawara [aut, ths, cre]
,
Federal Center for Technological Education of Rio de Janeiro [...truncated...]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between tspredit versions 1.0.727 dated 2023-11-02 and 1.0.737 dated 2023-11-09
DESCRIPTION | 8 ++++---- MD5 | 14 ++++++++------ NAMESPACE | 5 +++++ R/recursive_filter.R | 2 +- R/ts_fil_kalman.R |only R/ts_fil_seas_adj.R | 2 +- R/ts_fil_smooth.R | 2 +- R/ts_fil_spline.R | 2 +- man/ts_fil_kalman.Rd |only 9 files changed, 21 insertions(+), 14 deletions(-)
Title: GUI Tools Made Easy: Interact with Models and Explore Data
Description: Provides software to facilitate the design, testing, and operation
of computer models. It focuses particularly on tools that make it easy to
construct and edit a customized graphical user interface ('GUI'). Although our
simplified 'GUI' language depends heavily on the R interface to the 'Tcl/Tk'
package, a user does not need to know 'Tcl/Tk'. Examples illustrate models
built with other R packages, including 'PBSmapping', 'PBSddesolve', and 'BRugs'.
A complete user's guide 'PBSmodelling-UG.pdf' shows how to use this package
effectively.
Author: Jon T. Schnute [aut],
Alex Couture-Beil [aut],
Rowan Haigh [aut, cre],
Nicholas Boers [ctb],
Anisa Egeli [ctb],
A. R. Kronlund [ctb],
Steve Martell [ctb],
Norm Olsen [ctb]
Maintainer: Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>
Diff between PBSmodelling versions 2.68.8 dated 2019-03-14 and 2.69.3 dated 2023-11-09
PBSmodelling-2.68.8/PBSmodelling/inst/PBStools |only PBSmodelling-2.68.8/PBSmodelling/man/testPch.Rd |only PBSmodelling-2.69.3/PBSmodelling/DESCRIPTION | 18 PBSmodelling-2.69.3/PBSmodelling/MD5 | 82 PBSmodelling-2.69.3/PBSmodelling/NAMESPACE | 136 PBSmodelling-2.69.3/PBSmodelling/R/cSupport.r | 51 PBSmodelling-2.69.3/PBSmodelling/R/listFuns.r | 259 - PBSmodelling-2.69.3/PBSmodelling/R/plotFuns.r | 444 +-- PBSmodelling-2.69.3/PBSmodelling/R/projectFuns.r | 14 PBSmodelling-2.69.3/PBSmodelling/R/supportFuns.r | 1470 +++++----- PBSmodelling-2.69.3/PBSmodelling/R/zzz.r | 87 PBSmodelling-2.69.3/PBSmodelling/inst/doc/ChangeLog.txt | 61 PBSmodelling-2.69.3/PBSmodelling/inst/doc/PBSmodelling-UG.pdf |binary PBSmodelling-2.69.3/PBSmodelling/inst/tools |only PBSmodelling-2.69.3/PBSmodelling/man/PBStalk-class.Rd | 30 PBSmodelling-2.69.3/PBSmodelling/man/dot-PBSmodEnv.Rd |only PBSmodelling-2.69.3/PBSmodelling/man/dot-win.funs.Rd |only PBSmodelling-2.69.3/PBSmodelling/man/getPBSext.Rd | 17 PBSmodelling-2.69.3/PBSmodelling/man/openFile.Rd | 33 PBSmodelling-2.69.3/PBSmodelling/man/openUG.Rd | 23 PBSmodelling-2.69.3/PBSmodelling/man/plotBubbles.Rd | 48 PBSmodelling-2.69.3/PBSmodelling/man/setPBSext.Rd | 45 PBSmodelling-2.69.3/PBSmodelling/man/testAlpha.Rd | 33 PBSmodelling-2.69.3/PBSmodelling/man/testCol.Rd | 23 PBSmodelling-2.69.3/PBSmodelling/man/testLty.Rd | 19 PBSmodelling-2.69.3/PBSmodelling/man/tget.Rd | 21 PBSmodelling-2.69.3/PBSmodelling/vignettes/PBSmodellingIntro.Rnw | 2 PBSmodelling-2.69.3/PBSmodelling/vignettes/upquote.sty |only 28 files changed, 1623 insertions(+), 1293 deletions(-)
Title: Enhance Reproducibility of R Code
Description: A collection of high-level, machine- and OS-independent tools
for making reproducible and reusable content in R.
The two workhorse functions are Cache() and prepInputs(). Cache()
allows for nested caching, is robust to environments and objects with
environments (like functions), and has deals with some classes of
file-backed R objects e.g., from terra and raster packages.
Both functions have been developed to
be foundational components of data retrieval
and processing in continuous workflow situations. In both functions,
efforts are made to make the first and subsequent calls of functions have
the same result, but faster at subsequent times by way of checksums
and digesting. Several features are still under development, including
cloud storage of cached objects, allowing for sharing between users. Several
advanced options are available, see ?reproducibleOptions().
Author: Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [aut] ,
Tati Micheletti [ctb] ,
Ceres Barros [ctb] ,
Ian Eddy [ctb] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between reproducible versions 2.0.8 dated 2023-08-23 and 2.0.9 dated 2023-11-09
DESCRIPTION | 12 MD5 | 88 - NAMESPACE | 8 NEWS.md | 27 R/DBI.R | 69 - R/cache-helpers.R | 64 - R/cache-internals.R | 9 R/cache.R | 143 +- R/cacheGeo.R | 2 R/checksums.R | 5 R/cloud.R | 23 R/convertPaths.R | 64 - R/download.R | 57 - R/exportedMethods.R | 331 ++++- R/helpers.R | 82 - R/objectSize.R | 5 R/options.R | 32 R/paths.R | 205 +++ R/postProcess.R | 6 R/postProcessTo.R | 457 ++++++-- R/preProcess.R | 262 ++-- R/prepInputs.R | 13 R/robustDigest.R | 13 R/showCacheEtc.R | 10 R/terra-migration.R | 2 R/zzz.R | 2 build/vignette.rds |binary inst/WORDLIST | 35 inst/doc/Intro-to-Cache.html | 1872 +++++++++++++++------------------ man/CacheGeo.Rd | 2 man/CacheHelpers.Rd | 3 man/Filenames.Rd | 19 man/checkRelative.Rd | 4 man/dotWrap.Rd | 32 man/downloadFile.Rd | 3 man/downloadRemote.Rd | 3 man/isUpdated.Rd |only man/normPath.Rd | 19 man/relativePaths.Rd |only man/reproducibleOptions.Rd | 22 tests/testthat/setup.R | 5 tests/testthat/test-cache.R | 369 +++--- tests/testthat/test-checkPath.R | 30 tests/testthat/test-postProcessTerra.R | 9 tests/testthat/test-preProcessWorks.R | 37 tests/testthat/test-prepInputs.R | 174 +-- 46 files changed, 2683 insertions(+), 1946 deletions(-)
Title: Evidential Clustering
Description: Various clustering algorithms that produce a credal partition,
i.e., a set of Dempster-Shafer mass functions representing the membership of objects
to clusters. The mass functions quantify the cluster-membership uncertainty of the
objects. The algorithms are: Evidential c-Means, Relational Evidential c-Means,
Constrained Evidential c-Means, Evidential Clustering, Constrained Evidential
Clustering, Evidential K-nearest-neighbor-based Clustering, Bootstrap Model-Based
Evidential Clustering, Belief Peak Evidential Clustering, Neural-Network-based
Evidential Clustering.
Author: Thierry Denoeux
Maintainer: Thierry Denoeux <tdenoeux@utc.fr>
Diff between evclust versions 2.0.2 dated 2021-05-28 and 2.0.3 dated 2023-11-09
DESCRIPTION | 11 ++++++----- MD5 | 20 ++++++++++---------- NEWS | 30 +++++++++++++++++++++--------- R/EkNNclus.R | 2 +- R/evclust.R | 1 + R/solqp.R | 6 ++---- build/vignette.rds |binary inst/doc/evclust_vignette.pdf |binary man/EkNNclus.Rd | 2 +- man/evclust.Rd | 1 + man/nnevclus_mb.Rd | 4 ++-- 11 files changed, 45 insertions(+), 32 deletions(-)
Title: Vault Client for Secrets and Sensitive Data
Description: Provides an interface to a 'HashiCorp' vault server over
its http API (typically these are self-hosted; see
<https://www.vaultproject.io>). This allows for secure storage and
retrieval of secrets over a network, such as tokens, passwords and
certificates. Authentication with vault is supported through
several backends including user name/password and authentication via
'GitHub'.
Author: Rich FitzJohn [aut, cre],
Robert Ashton [aut],
Wes Hinsley [aut],
Imperial College of Science, Technology and Medicine [cph]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between vaultr versions 1.1.1 dated 2022-08-22 and 1.2.0 dated 2023-11-09
vaultr-1.1.1/vaultr/man/vaultr.Rd |only vaultr-1.1.1/vaultr/tests/testthat/helper-ci.R |only vaultr-1.2.0/vaultr/DESCRIPTION | 9 vaultr-1.2.0/vaultr/MD5 | 143 ++++----- vaultr-1.2.0/vaultr/NAMESPACE | 1 vaultr-1.2.0/vaultr/NEWS.md | 30 + vaultr-1.2.0/vaultr/R/format.R | 6 vaultr-1.2.0/vaultr/R/http.R | 14 vaultr-1.2.0/vaultr/R/server_manager.R | 153 ++-------- vaultr-1.2.0/vaultr/R/util.R | 21 - vaultr-1.2.0/vaultr/R/vault_api_client.R | 34 +- vaultr-1.2.0/vaultr/R/vault_client.R | 26 + vaultr-1.2.0/vaultr/R/vault_client_audit.R | 7 vaultr-1.2.0/vaultr/R/vault_client_auth.R | 15 vaultr-1.2.0/vaultr/R/vault_client_auth_approle.R | 2 vaultr-1.2.0/vaultr/R/vault_client_auth_github.R | 9 vaultr-1.2.0/vaultr/R/vault_client_auth_ldap.R |only vaultr-1.2.0/vaultr/R/vault_client_auth_userpass.R | 16 - vaultr-1.2.0/vaultr/R/vault_client_cubbyhole.R | 2 vaultr-1.2.0/vaultr/R/vault_client_kv2.R | 2 vaultr-1.2.0/vaultr/R/vault_client_policy.R | 2 vaultr-1.2.0/vaultr/R/vault_client_secrets.R | 5 vaultr-1.2.0/vaultr/R/vault_client_token.R | 8 vaultr-1.2.0/vaultr/R/vault_client_transit.R | 4 vaultr-1.2.0/vaultr/R/vault_server_instance.R | 8 vaultr-1.2.0/vaultr/R/vaultr.R | 4 vaultr-1.2.0/vaultr/README.md | 26 - vaultr-1.2.0/vaultr/build/vignette.rds |binary vaultr-1.2.0/vaultr/inst/WORDLIST | 2 vaultr-1.2.0/vaultr/inst/doc/packages.Rmd | 60 ++- vaultr-1.2.0/vaultr/inst/doc/packages.html | 93 +++--- vaultr-1.2.0/vaultr/inst/doc/vaultr.Rmd | 42 -- vaultr-1.2.0/vaultr/inst/doc/vaultr.html | 43 +- vaultr-1.2.0/vaultr/man/vault_api_client.Rd | 6 vaultr-1.2.0/vaultr/man/vault_client.Rd | 23 + vaultr-1.2.0/vaultr/man/vault_client_audit.Rd | 2 vaultr-1.2.0/vaultr/man/vault_client_auth.Rd | 6 vaultr-1.2.0/vaultr/man/vault_client_auth_approle.Rd | 2 vaultr-1.2.0/vaultr/man/vault_client_auth_github.Rd | 9 vaultr-1.2.0/vaultr/man/vault_client_auth_ldap.Rd |only vaultr-1.2.0/vaultr/man/vault_client_auth_userpass.Rd | 16 - vaultr-1.2.0/vaultr/man/vault_client_cubbyhole.Rd | 2 vaultr-1.2.0/vaultr/man/vault_client_kv2.Rd | 2 vaultr-1.2.0/vaultr/man/vault_client_policy.Rd | 2 vaultr-1.2.0/vaultr/man/vault_client_token.Rd | 8 vaultr-1.2.0/vaultr/man/vault_client_transit.Rd | 2 vaultr-1.2.0/vaultr/man/vault_test_server.Rd | 67 +--- vaultr-1.2.0/vaultr/man/vaultr-package.Rd |only vaultr-1.2.0/vaultr/tests/testthat/helper-ldap.R |only vaultr-1.2.0/vaultr/tests/testthat/helper-vault.R | 21 + vaultr-1.2.0/vaultr/tests/testthat/test-cache.R | 30 + vaultr-1.2.0/vaultr/tests/testthat/test-object.R | 12 vaultr-1.2.0/vaultr/tests/testthat/test-server-manager.R | 148 ++++----- vaultr-1.2.0/vaultr/tests/testthat/test-util-assert.R | 2 vaultr-1.2.0/vaultr/tests/testthat/test-util.R | 26 - vaultr-1.2.0/vaultr/tests/testthat/test-vault-api.R | 14 vaultr-1.2.0/vaultr/tests/testthat/test-vault-audit.R | 9 vaultr-1.2.0/vaultr/tests/testthat/test-vault-auth-approle.R | 35 +- vaultr-1.2.0/vaultr/tests/testthat/test-vault-auth-github.R | 23 - vaultr-1.2.0/vaultr/tests/testthat/test-vault-auth-ldap.R |only vaultr-1.2.0/vaultr/tests/testthat/test-vault-auth-userpass.R | 59 +-- vaultr-1.2.0/vaultr/tests/testthat/test-vault-auth.R | 11 vaultr-1.2.0/vaultr/tests/testthat/test-vault-basic.R | 13 vaultr-1.2.0/vaultr/tests/testthat/test-vault-cubbyhole.R | 9 vaultr-1.2.0/vaultr/tests/testthat/test-vault-kv1.R | 19 - vaultr-1.2.0/vaultr/tests/testthat/test-vault-kv2.R | 34 +- vaultr-1.2.0/vaultr/tests/testthat/test-vault-operator.R | 29 - vaultr-1.2.0/vaultr/tests/testthat/test-vault-policy.R | 9 vaultr-1.2.0/vaultr/tests/testthat/test-vault-resolve-secrets.R | 27 - vaultr-1.2.0/vaultr/tests/testthat/test-vault-secrets.R | 22 - vaultr-1.2.0/vaultr/tests/testthat/test-vault-token.R | 55 +-- vaultr-1.2.0/vaultr/tests/testthat/test-vault-transit.R | 51 +-- vaultr-1.2.0/vaultr/tests/testthat/test-vault.R | 65 +++- vaultr-1.2.0/vaultr/tests/testthat/test-vaultr-tools.R | 8 vaultr-1.2.0/vaultr/vignettes/packages.Rmd | 60 ++- vaultr-1.2.0/vaultr/vignettes/vaultr.Rmd | 42 -- 76 files changed, 896 insertions(+), 871 deletions(-)
Title: Formula Interface to the Grammar of Graphics
Description: Provides a formula interface to 'ggplot2' graphics.
Author: Daniel Kaplan [aut],
Randall Pruim [aut, cre]
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between ggformula versions 0.10.4 dated 2023-04-11 and 0.12.0 dated 2023-11-09
ggformula-0.10.4/ggformula/R/ggstance.R |only ggformula-0.10.4/ggformula/man/gf_barh.Rd |only ggformula-0.10.4/ggformula/man/gf_boxploth.Rd |only ggformula-0.10.4/ggformula/man/gf_errorbarh.Rd |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-barh1.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-barh1a.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-colh1.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-colh1a.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-countsh1.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-countsh1a.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-countsh2.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-countsh2a.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-crossbarh1.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-crossbarh1a.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-errorbarh1.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-errorbarh1a.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-percentsh1.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-percentsh1a.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-percentsh2.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-percentsh2a.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-pointrangeh1.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-pointrangeh1a.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-propsh1.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-propsh1a.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-propsh2.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-propsh2a.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-sina.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-sina2.svg |only ggformula-0.10.4/ggformula/tests/testthat/_snaps/layer-factory/gf-sina3.svg |only ggformula-0.12.0/ggformula/DESCRIPTION | 22 ggformula-0.12.0/ggformula/MD5 | 194 +-- ggformula-0.12.0/ggformula/NAMESPACE | 15 ggformula-0.12.0/ggformula/R/formula2aes.R | 6 ggformula-0.12.0/ggformula/R/gf_aux.R | 30 ggformula-0.12.0/ggformula/R/gf_dist.R | 27 ggformula-0.12.0/ggformula/R/gf_function2d.R | 23 ggformula-0.12.0/ggformula/R/gf_functions.R | 543 +++++----- ggformula-0.12.0/ggformula/R/gf_plot.R | 4 ggformula-0.12.0/ggformula/R/ggformula-package.R |only ggformula-0.12.0/ggformula/R/ggridges.R | 48 ggformula-0.12.0/ggformula/R/ggstance-deprecated.R |only ggformula-0.12.0/ggformula/R/layer_factory.R | 32 ggformula-0.12.0/ggformula/R/reexports.R | 22 ggformula-0.12.0/ggformula/R/relabel.R | 10 ggformula-0.12.0/ggformula/R/scales.R | 6 ggformula-0.12.0/ggformula/R/utils.R | 20 ggformula-0.12.0/ggformula/inst/doc/ggformula.R | 26 ggformula-0.12.0/ggformula/inst/doc/ggformula.Rmd | 16 ggformula-0.12.0/ggformula/inst/doc/ggformula.html | 18 ggformula-0.12.0/ggformula/inst/tutorials/introduction/Plotting_with_formulas.Rmd | 26 ggformula-0.12.0/ggformula/inst/tutorials/refining/Refining_ggformula.Rmd | 72 - ggformula-0.12.0/ggformula/man/discrete_breaks.Rd | 6 ggformula-0.12.0/ggformula/man/gf_area.Rd | 8 ggformula-0.12.0/ggformula/man/gf_aux.Rd | 18 ggformula-0.12.0/ggformula/man/gf_bar.Rd | 116 -- ggformula-0.12.0/ggformula/man/gf_bin2d.Rd | 2 ggformula-0.12.0/ggformula/man/gf_blank.Rd | 2 ggformula-0.12.0/ggformula/man/gf_boxplot.Rd | 2 ggformula-0.12.0/ggformula/man/gf_col.Rd | 18 ggformula-0.12.0/ggformula/man/gf_contour.Rd | 4 ggformula-0.12.0/ggformula/man/gf_count.Rd | 2 ggformula-0.12.0/ggformula/man/gf_crossbar.Rd | 51 ggformula-0.12.0/ggformula/man/gf_curve.Rd | 4 ggformula-0.12.0/ggformula/man/gf_density.Rd | 4 ggformula-0.12.0/ggformula/man/gf_density_2d.Rd | 8 ggformula-0.12.0/ggformula/man/gf_dist.Rd | 4 ggformula-0.12.0/ggformula/man/gf_ellipse.Rd | 24 ggformula-0.12.0/ggformula/man/gf_empty.Rd | 2 ggformula-0.12.0/ggformula/man/gf_errorbar.Rd | 18 ggformula-0.12.0/ggformula/man/gf_facet_grid.Rd | 12 ggformula-0.12.0/ggformula/man/gf_fitdistr.Rd | 10 ggformula-0.12.0/ggformula/man/gf_freqpoly.Rd | 4 ggformula-0.12.0/ggformula/man/gf_function.Rd | 16 ggformula-0.12.0/ggformula/man/gf_function2d.Rd | 12 ggformula-0.12.0/ggformula/man/gf_hex.Rd | 2 ggformula-0.12.0/ggformula/man/gf_histogram.Rd | 55 - 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ggformula-0.12.0/ggformula/tests/testthat/_snaps/layer-factory/gf-fun2.svg | 112 +- ggformula-0.12.0/ggformula/tests/testthat/_snaps/layer-factory/gf-fun2d5.svg | 69 - ggformula-0.12.0/ggformula/tests/testthat/_snaps/layer-factory/gf-fun2d6.svg | 112 +- ggformula-0.12.0/ggformula/tests/testthat/_snaps/layer-factory/gf-hex1.svg | 156 +- ggformula-0.12.0/ggformula/tests/testthat/_snaps/layer-factory/gf-qq1.svg | 10 ggformula-0.12.0/ggformula/tests/testthat/_snaps/layer-factory/gf-qqstep1.svg | 10 ggformula-0.12.0/ggformula/tests/testthat/_snaps/layer-factory/gf-rug-on-y-only-but-with-jitter.svg | 18 ggformula-0.12.0/ggformula/tests/testthat/_snaps/layer-factory/gf-rugy.svg | 18 ggformula-0.12.0/ggformula/tests/testthat/test-lableing.R | 8 ggformula-0.12.0/ggformula/tests/testthat/test-layer-factory.R | 536 ++++----- ggformula-0.12.0/ggformula/vignettes/ggformula.Rmd | 16 114 files changed, 1438 insertions(+), 1730 deletions(-)
Title: Kinship Analysis with Linked Markers
Description: A 'shiny' application for forensic kinship testing, based on
the 'pedsuite' R packages. 'KLINK' is closely aligned with the (non-R)
software 'Familias' and 'FamLink', but offers several unique features,
including visualisations and automated report generation. The
calculation of likelihood ratios supports pairs of linked markers, and
all common mutation models.
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between KLINK versions 0.6.1 dated 2023-08-30 and 0.7.2 dated 2023-11-09
KLINK-0.6.1/KLINK/R/runKLINK.R |only KLINK-0.6.1/KLINK/man/runKLINK.Rd |only KLINK-0.7.2/KLINK/DESCRIPTION | 16 + KLINK-0.7.2/KLINK/MD5 | 46 +++-- KLINK-0.7.2/KLINK/NAMESPACE | 35 ++-- KLINK-0.7.2/KLINK/NEWS.md | 33 ++++ KLINK-0.7.2/KLINK/R/KLINK-package.R | 4 KLINK-0.7.2/KLINK/R/data.R | 16 + KLINK-0.7.2/KLINK/R/karyo.R | 5 KLINK-0.7.2/KLINK/R/launchApp.R |only KLINK-0.7.2/KLINK/R/linkedLR.R | 8 KLINK-0.7.2/KLINK/R/loadFamFile.R | 59 +++++-- KLINK-0.7.2/KLINK/R/lumping.R | 2 KLINK-0.7.2/KLINK/R/markerSummary.R | 20 +- KLINK-0.7.2/KLINK/R/plotPed.R | 26 ++- KLINK-0.7.2/KLINK/R/utils.R | 12 + KLINK-0.7.2/KLINK/R/writeMasked.R |only KLINK-0.7.2/KLINK/R/writeResult.R | 271 ++++++++++++++++++--------------- KLINK-0.7.2/KLINK/R/zzz.R |only KLINK-0.7.2/KLINK/README.md | 22 ++ KLINK-0.7.2/KLINK/data/paternity.rda |only KLINK-0.7.2/KLINK/inst/shiny |only KLINK-0.7.2/KLINK/man/KLINK-package.Rd | 46 ++--- KLINK-0.7.2/KLINK/man/LINKAGEMAP.Rd | 2 KLINK-0.7.2/KLINK/man/figures |only KLINK-0.7.2/KLINK/man/launchApp.Rd |only KLINK-0.7.2/KLINK/man/loadFamFile.Rd |only KLINK-0.7.2/KLINK/man/markerSummary.Rd |only KLINK-0.7.2/KLINK/man/paternity.Rd |only KLINK-0.7.2/KLINK/man/writeResult.Rd |only 30 files changed, 418 insertions(+), 205 deletions(-)
Title: Hypothesis Matrix Translation
Description: Translation between experimental null hypotheses, hypothesis matrices, and contrast matrices as used in linear regression models. The package is based on the method described in Schad et al. (2019) <doi:10.1016/j.jml.2019.104038> and Rabe et al. (2020) <doi:10.21105/joss.02134>.
Author: Maximilian M. Rabe [aut, cre] ,
Shravan Vasishth [aut] ,
Sven Hohenstein [aut] ,
Reinhold Kliegl [aut] ,
Daniel J. Schad [aut]
Maintainer: Maximilian M. Rabe <maximilian.rabe@uni-potsdam.de>
Diff between hypr versions 0.2.7 dated 2023-10-20 and 0.2.8 dated 2023-11-09
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/equations.R | 24 +++++++++++------------- 3 files changed, 16 insertions(+), 18 deletions(-)
Title: Evidential Regression
Description: An implementation of the 'Evidential Neural Network for Regression' model recently introduced in Denoeux (2023) <doi:10.36227/techrxiv.21791831.v1>. In this model, prediction uncertainty is quantified by Gaussian random fuzzy numbers as introduced in Denoeux (2023) <doi:10.1016/j.fss.2022.06.004>. The package contains functions for training the network, tuning hyperparameters by cross-validation or the hold-out method, and making predictions. It also contains utilities for making calculations with Gaussian random fuzzy numbers (such as, e.g., computing the degrees of belief and plausibility of an interval, or combining Gaussian random fuzzy numbers).
Author: Thierry Denoeux [aut, cre]
Maintainer: Thierry Denoeux <tdenoeux@utc.fr>
Diff between evreg versions 1.0.2 dated 2023-04-04 and 1.0.3 dated 2023-11-09
DESCRIPTION | 8 +- MD5 | 10 +- NEWS | 7 + R/evreg.R | 1 build/vignette.rds |binary inst/doc/Introduction.html | 176 ++++++++++++++++++++++----------------------- 6 files changed, 104 insertions(+), 98 deletions(-)
Title: Implement Download Buttons in 'rmarkdown'
Description: Implement download buttons in HTML output from 'rmarkdown' without the need for 'runtime:shiny'.
Author: Felipe Mattioni Maturana [aut, cre]
,
John Coene [ctb]
Maintainer: Felipe Mattioni Maturana <felipe.mattioni@med.uni-tuebingen.de>
Diff between downloadthis versions 0.3.2 dated 2022-08-16 and 0.3.3 dated 2023-11-09
DESCRIPTION | 8 MD5 | 22 +- NEWS.md | 6 R/utils.R | 11 - README.md | 17 + build/vignette.rds |binary inst/doc/button_types.R | 2 inst/doc/button_types.html | 287 ++++++++++++++++----------------- inst/doc/customization.R | 2 inst/doc/customization.html | 380 ++++++++++++++++++++++---------------------- inst/doc/downloadthis.R | 2 inst/doc/downloadthis.html | 373 ++++++++++++++++++++++--------------------- 12 files changed, 566 insertions(+), 544 deletions(-)
Title: R Client for 'Adobe Analytics' API 2.0
Description: Connect to the 'Adobe Analytics' API v2.0 <https://github.com/AdobeDocs/analytics-2.0-apis>
which powers 'Analysis Workspace'. The package was developed
with the analyst in mind, and it will continue to be
developed with the guiding principles of iterative,
repeatable, timely analysis.
Author: Ben Woodard [aut, cre],
Tim Wilson [aut, ctb],
Charles Gallagher [ctb],
Mark Edmondson [ctb]
Maintainer: Ben Woodard <benrwoodard@gmail.com>
Diff between adobeanalyticsr versions 0.3.3 dated 2022-10-18 and 0.4.0 dated 2023-11-09
CHANGELOG | 47 +- DESCRIPTION | 10 MD5 | 95 +++- NAMESPACE | 26 + NEWS.md | 31 + R/call_api.R | 3 R/cm_build.R |only R/cm_copy.R |only R/cm_delete.R |only R/cm_formula.R |only R/cm_function.R |only R/cm_update.R |only R/cm_validate.R |only R/freeform_report.R | 3 R/freeform_segments.R | 13 R/get_calculatedmetrics.R | 14 R/get_cm_functions.R |only R/get_project_config.R |only R/get_projects.R |only R/get_reportsuites.R | 7 R/get_req_data.R | 2 R/get_segments.R | 6 R/get_tags.R |only R/globals.R | 3 R/project_build.R |only R/project_update.R |only R/put_data.R |only R/segment_build.R | 54 +- R/segment_copy.R |only R/segment_delete.R |only R/segment_sequence.R | 11 R/segment_update.R |only R/segment_validate.R | 2 R/tag_add.R |only README.md | 2 build/vignette.rds |binary inst/doc/getting-started.html | 420 ++++++++++----------- inst/doc/working_with_calculated_metrics.R |only inst/doc/working_with_calculated_metrics.Rmd |only inst/doc/working_with_calculated_metrics.html |only man/aw_auth.Rd | 6 man/aw_freeform_table.Rd | 3 man/aw_get_project_config.Rd |only man/aw_get_projects.Rd |only man/aw_get_segments.Rd | 6 man/aw_get_tags.Rd |only man/aw_segment_table.Rd | 6 man/cm_build.Rd |only man/cm_copy.Rd |only man/cm_delete.Rd |only man/cm_formula.Rd |only man/cm_function.Rd |only man/cm_update.Rd |only man/cm_val.Rd |only man/get_cm_functions.Rd |only man/proj_build.Rd |only man/proj_update.Rd |only man/seg_build.Rd | 9 man/seg_copy.Rd |only man/seg_delete.Rd |only man/seg_update.Rd |only man/seg_val.Rd | 2 man/tags_add.Rd |only tests/aa.oauth |only tests/segcreate_tesst.qmd |only vignettes/aa.oauth |binary vignettes/precompile.r | 1 vignettes/working_with_calculated_metrics.Rmd |only vignettes/working_with_calculated_metrics.Rmd.orig |only vignettes/working_with_calculated_metrics.qmd |only 70 files changed, 469 insertions(+), 313 deletions(-)
More information about adobeanalyticsr at CRAN
Permanent link
Title: Evidential Distance-Based Classification
Description: Different evidential classifiers, which provide
outputs in the form of Dempster-Shafer mass functions. The methods are:
the evidential K-nearest neighbor rule, the evidential neural
network, radial basis function neural networks, logistic regression,
feed-forward neural networks.
Author: Thierry Denoeux
Maintainer: Thierry Denoeux <tdenoeux@utc.fr>
Diff between evclass versions 2.0.1 dated 2023-08-13 and 2.0.2 dated 2023-11-09
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 4 ++++ R/evclass.R | 1 + inst/doc/Introduction.html | 4 ++-- 5 files changed, 15 insertions(+), 10 deletions(-)
Title: A Collection of Efficient and Extremely Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column and row wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), are some of the many fast functions. References: a) Tsagris M., Papadakis M. (2018). Taking R to its limits: 70+ tips. PeerJ Preprints 6:e26605v1 <doi:10.7287/peerj.preprints.26605v1>. b) Tsagris M. and Papadakis M. (2018). Forward regression in R: from the extreme slow to the extreme fast. Journal of Data Science, 16(4): 771--780. <doi:10.6339/JDS.201810_16(4).00006>. c) Chatzipantsiou C., Dimitriadis M., Papadakis M. and Tsagris M. (2020). Extremely Efficient Permutation and Bootstrap Hypothesis Tests Using Hypothesis Tests Using R. Journal of Modern Applied Statistical Methods, 18(2), eP2898. <doi:10.48550/arXiv.1806.10947>.
Author: Manos Papadakis [aut, cre, cph],
Michail Tsagris [aut],
Marios Dimitriadis [ctb],
Stefanos Fafalios [aut],
Ioannis Tsamardinos [ctb],
Matteo Fasiolo [ctb],
Giorgos Borboudakis [ctb],
John Burkardt [ctb],
Changliang Zou [ctb],
Kleanthi Lakiotaki [ctb] [...truncated...]
Maintainer: Manos Papadakis <rfastofficial@gmail.com>
Diff between Rfast versions 2.0.9 dated 2023-10-30 and 2.1.0 dated 2023-11-09
DESCRIPTION | 10 ++--- MD5 | 14 ++++--- NEWS.md | 2 - R/regression_models.R | 19 +++++---- README.md | 3 + build |only man/Rfast-package.Rd | 20 ++++------ man/macros |only src/col_row_utilities.cpp | 91 +++++++++++++++++++++++++--------------------- 9 files changed, 84 insertions(+), 75 deletions(-)
Title: Search Download and Handle Data from Copernicus Marine Service
Information
Description: Subset and download data from EU Copernicus Marine
Service Information: <https://data.marine.copernicus.eu>.
Import data on the oceans physical and biogeochemical state
from Copernicus into R without the need of external software.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between CopernicusMarine versions 0.0.9 dated 2023-08-21 and 0.1.1 dated 2023-11-09
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 14 +++++++++++++- R/copernicus_download_motu.r | 5 ++++- R/copernicus_product_details.r | 2 +- R/copernicus_product_metadata.r | 2 +- R/copernicus_products_list.r | 2 +- README.md | 36 +++++++++++++++++++----------------- man/figures/README-leaflet-1.png |binary 9 files changed, 51 insertions(+), 34 deletions(-)
More information about CopernicusMarine at CRAN
Permanent link
Title: Tools for Designing and Weighting Survey Samples
Description: Functions and datasets to support Valliant, Dever, and Kreuter, Practical Tools for Designing and Weighting Survey Samples (2nd edition, 2018). Contains functions for sample size calculation for survey samples using stratified or clustered one-, two-, and three-stage sample designs, and single-stage audit sample designs. Functions are included that will group geographic units accounting for distances apart and measures of size. Other functions compute variance components for multistage designs and sample sizes in two-phase designs. A number of example data sets are included.
Author: Richard Valliant, Jill A. Dever, Frauke Kreuter, George Zipf
Maintainer: Richard Valliant <valliant@umich.edu>
Diff between PracTools versions 1.4 dated 2023-05-23 and 1.4.1 dated 2023-11-09
DESCRIPTION | 8 - MD5 | 87 ++++++++-------- NAMESPACE | 3 NEWS.md | 18 +++ R/BW2stagePPS.R | 2 R/BW3stagePPS.R | 2 R/deffCR.R | 172 +++++++++++++++++--------------- build/vignette.rds |binary data/Domainy1y2.RData |binary data/MDarea.pop.RData |binary data/TPV.RData |binary data/Test_Data_US.RData |binary data/ThirdGrade.RData |binary data/hospital.RData |binary data/labor.RData |binary data/mibrfss.RData |binary data/nhis.RData |binary data/nhis.large.RData |binary data/nhispart.RData |binary data/smho.N874.RData |binary data/smho98.RData |binary inst/doc/Design-effects.R |only inst/doc/Design-effects.Rmd |only inst/doc/Design-effects.html |only inst/doc/Distance-and-MOS-PSUs.R | 12 +- inst/doc/Distance-and-MOS-PSUs.Rmd | 21 ++- inst/doc/Distance-and-MOS-PSUs.html | 193 +++++++++++++++++++----------------- inst/doc/Select-samsize-fcns.R | 2 inst/doc/Select-samsize-fcns.Rmd | 2 inst/doc/Select-samsize-fcns.html | 23 ++-- inst/doc/Singlestage-samsize.R | 2 inst/doc/Singlestage-samsize.Rmd | 2 inst/doc/Singlestage-samsize.html | 160 ++++++++++++++--------------- inst/doc/Varcomps-multistage.R | 2 inst/doc/Varcomps-multistage.Rmd | 2 inst/doc/Varcomps-multistage.html | 110 ++++++++++---------- man/deff.Rd | 2 man/deffCR.Rd | 9 - man/deffS.Rd | 4 man/nhis.large.Rd | 2 vignettes/Design-effects.Rmd |only vignettes/Distance-and-MOS-PSUs.Rmd | 21 ++- vignettes/EXPTOTAL.png |only vignettes/Select-samsize-fcns.Rmd | 2 vignettes/Singlestage-samsize.Rmd | 2 vignettes/Varcomps-multistage.Rmd | 2 vignettes/practools.bib | 81 ++++++++++++++- 47 files changed, 558 insertions(+), 390 deletions(-)
Title: Process Orbitrap Isotopocule Data
Description: Read and process isotopocule data from an Orbitrap Isotope Solutions mass spectrometer. Citation: Kantnerova et al. (in review).
Author: Caj Neubauer [aut, cre, cph] ,
Sebastian Kopf [aut] ,
Kristyna Kantnerova [aut]
Maintainer: Caj Neubauer <caj.neubauer@colorado.edu>
Diff between isoorbi versions 1.1.0 dated 2023-06-24 and 1.3.0 dated 2023-11-09
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isoorbi-1.3.0/isoorbi/vignettes/isoxl_demo.Rmd |only isoorbi-1.3.0/isoorbi/vignettes/isoxl_gui_screenshot.png |only isoorbi-1.3.0/isoorbi/vignettes/quick_start.Rmd | 138 isoorbi-1.3.0/isoorbi/vignettes/shot_noise.Rmd |only 108 files changed, 28422 insertions(+), 27767 deletions(-)
Title: Functional Mediation for a Distal Outcome
Description: Fits a functional mediation model with a scalar distal outcome. The method is described in detail by Coffman, Dziak, Litson, Chakraborti, Piper & Li (2021) <arXiv:2112.03960>. The model is similar to that of Lindquist (2012) <doi:10.1080/01621459.2012.695640> although allowing a binary outcome as an alternative to a numerical outcome. The current version is a minor bug fix in the vignette. The development of this package was part of a research project supported by National Institutes of Health grants P50 DA039838 from the National Institute of Drug Abuse and 1R01 CA229542-01 from the National Cancer Institute and the NIH Office of Behavioral and Social Science Research. Content is solely the responsibility of the authors and does not necessarily represent the official views of the funding institutions mentioned above. This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNES [...truncated...]
Author: John J. Dziak [aut, cre] ,
Donna L. Coffman [aut] ,
Kaylee Litson [aut],
Yajnaseni Chakraborti [aut],
Runze Li [aut]
Maintainer: John J. Dziak <dziakj1@gmail.com>
Diff between funmediation versions 1.0.1 dated 2021-12-15 and 1.0.2 dated 2023-11-09
DESCRIPTION | 12 MD5 | 14 R/funmediation.r | 4 build/vignette.rds |binary inst/doc/vignette-funmed.Rmd | 4 inst/doc/vignette-funmed.html | 2390 +++++++++++++++++++++-------------- man/simulate_funmediation_example.Rd | 12 vignettes/vignette-funmed.Rmd | 4 8 files changed, 1474 insertions(+), 966 deletions(-)
Title: Test Coverage for Packages
Description: Track and report code coverage for your package and (optionally)
upload the results to a coverage service like 'Codecov' <https://about.codecov.io> or
'Coveralls' <https://coveralls.io>. Code coverage is a measure of the amount of
code being exercised by a set of tests. It is an indirect measure of test
quality and completeness. This package is compatible with any testing
methodology or framework and tracks coverage of both R code and compiled
C/C++/FORTRAN code.
Author: Jim Hester [aut, cre],
Willem Ligtenberg [ctb],
Kirill Mueller [ctb],
Henrik Bengtsson [ctb],
Steve Peak [ctb],
Kirill Sevastyanenko [ctb],
Jon Clayden [ctb],
Robert Flight [ctb],
Eric Brown [ctb],
Brodie Gaslam [ctb],
Will Beasley [ctb],
Robert Krzyz [...truncated...]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between covr versions 3.6.3 dated 2023-10-10 and 3.6.4 dated 2023-11-09
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/how_it_works.html | 4 ++-- tests/testthat/test-record_tests.R | 3 +++ 6 files changed, 17 insertions(+), 10 deletions(-)
Title: A Collection of Database, Data Structure, Visualization, and
Utility Functions for R
Description: The caroline R library contains dozens of functions useful
for: database migration (dbWriteTable2), database style joins &
aggregation (nerge, groupBy & bestBy), data structure
conversion (nv, tab2df), legend table making (sstable &
leghead), plot annotation (labsegs & mvlabs), data
visualization (pies, sparge, & raPlot), character string
manipulation (m & pad), file I/O (write.delim), batch scripting
and more. The package's greatest contributions lie in the
database style merge, aggregation and interface functions
as well as in it's extensive use and propagation of
row, column and vector names in most functions.
Author: David Schruth
Maintainer: David Schruth <code@anthropoidea.org>
Diff between caroline versions 0.9.0 dated 2022-11-12 and 0.9.2 dated 2023-11-09
DESCRIPTION | 10 +++++----- MD5 | 8 +++++--- NAMESPACE | 3 +++ R/sparge.R |only man/plot.sparge.Rd |only man/raPlot.Rd | 2 +- 6 files changed, 14 insertions(+), 9 deletions(-)
Title: Modern Text Mining Framework for R
Description: Fast and memory-friendly tools for text vectorization, topic
modeling (LDA, LSA), word embeddings (GloVe), similarities. This package
provides a source-agnostic streaming API, which allows researchers to perform
analysis of collections of documents which are larger than available RAM. All
core functions are parallelized to benefit from multicore machines.
Author: Dmitriy Selivanov [aut, cre, cph],
Manuel Bickel [aut, cph] ,
Qing Wang [aut, cph]
Maintainer: Dmitriy Selivanov <selivanov.dmitriy@gmail.com>
Diff between text2vec versions 0.6.3 dated 2022-11-30 and 0.6.4 dated 2023-11-09
text2vec-0.6.3/text2vec/inst/doc/files-multicore.R |only text2vec-0.6.3/text2vec/inst/doc/files-multicore.Rmd |only text2vec-0.6.3/text2vec/inst/doc/files-multicore.html |only text2vec-0.6.3/text2vec/vignettes/files-multicore.Rmd |only text2vec-0.6.4/text2vec/DESCRIPTION | 15 text2vec-0.6.4/text2vec/MD5 | 81 text2vec-0.6.4/text2vec/NEWS.md | 8 text2vec-0.6.4/text2vec/R/coherence.R | 4 text2vec-0.6.4/text2vec/R/distance_RWMD.R | 2 text2vec-0.6.4/text2vec/R/dtm.R | 25 text2vec-0.6.4/text2vec/R/iterators.R | 4 text2vec-0.6.4/text2vec/R/model_Collocations.R | 2 text2vec-0.6.4/text2vec/R/model_LDA.R | 2 text2vec-0.6.4/text2vec/R/model_bns.R | 4 text2vec-0.6.4/text2vec/R/perplexity.R | 2 text2vec-0.6.4/text2vec/R/tcm.R | 4 text2vec-0.6.4/text2vec/R/vocabulary.R | 5 text2vec-0.6.4/text2vec/build/vignette.rds |binary text2vec-0.6.4/text2vec/inst/doc/glove.R | 2 text2vec-0.6.4/text2vec/inst/doc/glove.Rmd | 13 text2vec-0.6.4/text2vec/inst/doc/glove.html | 1843 +----------- text2vec-0.6.4/text2vec/inst/doc/text-vectorization.R | 32 text2vec-0.6.4/text2vec/inst/doc/text-vectorization.Rmd | 11 text2vec-0.6.4/text2vec/inst/doc/text-vectorization.html | 2149 ++------------- text2vec-0.6.4/text2vec/man/BNS.Rd | 2 text2vec-0.6.4/text2vec/man/Collocations.Rd | 2 text2vec-0.6.4/text2vec/man/GloVe.Rd | 2 text2vec-0.6.4/text2vec/man/LatentDirichletAllocation.Rd | 2 text2vec-0.6.4/text2vec/man/RelaxedWordMoversDistance.Rd | 2 text2vec-0.6.4/text2vec/man/coherence.Rd | 6 text2vec-0.6.4/text2vec/man/create_dtm.Rd | 12 text2vec-0.6.4/text2vec/man/create_tcm.Rd | 4 text2vec-0.6.4/text2vec/man/ifiles.Rd | 2 text2vec-0.6.4/text2vec/man/itoken.Rd | 2 text2vec-0.6.4/text2vec/man/perplexity.Rd | 2 text2vec-0.6.4/text2vec/man/print.text2vec_vocabulary.Rd |only text2vec-0.6.4/text2vec/man/text2vec.Rd | 1 text2vec-0.6.4/text2vec/src/Makevars | 2 text2vec-0.6.4/text2vec/src/Makevars.win | 2 text2vec-0.6.4/text2vec/tests/testthat/test-coherence.R | 2 text2vec-0.6.4/text2vec/tests/testthat/test-tcm.R | 5 text2vec-0.6.4/text2vec/tests/testthat/test-utils.R | 6 text2vec-0.6.4/text2vec/vignettes/glove.Rmd | 13 text2vec-0.6.4/text2vec/vignettes/text-vectorization.Rmd | 11 44 files changed, 642 insertions(+), 3646 deletions(-)
Title: Provides Some Useful Functions for Making Statistical Tables
Description: You can use the functions provided by the package to make various statistical tables,
such as baseline data tables. Creates 'Table 1', i.e., a description of the baseline patient
characteristics, which is essential in every medical research.
Supports both continuous and categorical variables, as well as
p-values and standardized mean differences.
This method was described by Mary L McHugh (2013) <doi:10.11613/bm.2013.018>.
Author: Qiang Liu [aut, cre]
Maintainer: Qiang Liu <dege857@163.com>
Diff between scitb versions 0.1.2 dated 2023-11-02 and 0.1.5 dated 2023-11-09
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++++--------- NAMESPACE | 1 + R/nt.R |only R/sci1freq.R | 22 +++++++++++++++------- R/sci1mean.R | 41 ++++++++++++++++++++++++++++++----------- R/scitb-package.R |only R/scitb1.R | 32 ++++++++++++++++++++++---------- README.md | 1 - build |only man/sci1freq.Rd | 2 ++ man/sci1mean.Rd | 6 ++++++ man/scitb-package.Rd |only man/scitb1.Rd | 14 +++++++++++++- 14 files changed, 107 insertions(+), 44 deletions(-)
Title: Foundations and Applications of Statistics Using R (2nd Edition)
Description: Data sets and utilities to accompany the second edition of
"Foundations and Applications of Statistics: an Introduction
using R" (R Pruim, published by AMS, 2017), a text covering
topics from probability and mathematical statistics at an advanced
undergraduate level. R is integrated throughout, and access to all
the R code in the book is provided via the snippet() function.
Author: Randall Pruim [aut, cre]
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between fastR2 versions 1.2.2 dated 2022-03-15 and 1.2.4 dated 2023-11-09
fastR2-1.2.2/fastR2/R/fastR-internal.R |only fastR2-1.2.2/fastR2/R/fastR-package.R |only fastR2-1.2.2/fastR2/man/fastR-package.Rd |only fastR2-1.2.4/fastR2/DESCRIPTION | 8 fastR2-1.2.4/fastR2/MD5 | 121 +++--- fastR2-1.2.4/fastR2/NEWS.md | 4 fastR2-1.2.4/fastR2/R/datasets.R | 549 ++++++++++++++++++----------- fastR2-1.2.4/fastR2/R/fastR2-package.R |only fastR2-1.2.4/fastR2/build/vignette.rds |binary fastR2-1.2.4/fastR2/inst/doc/Errata2e.html | 300 ++++++++++++++- fastR2-1.2.4/fastR2/man/ACTgpa.Rd | 4 fastR2-1.2.4/fastR2/man/AirPollution.Rd | 4 fastR2-1.2.4/fastR2/man/AirlineArrival.Rd | 2 fastR2-1.2.4/fastR2/man/BallDrop.Rd | 4 fastR2-1.2.4/fastR2/man/Batting.Rd | 34 + fastR2-1.2.4/fastR2/man/Buckthorn.Rd | 3 fastR2-1.2.4/fastR2/man/Bugs.Rd | 6 fastR2-1.2.4/fastR2/man/Concrete.Rd | 2 fastR2-1.2.4/fastR2/man/ConcreteAll.Rd | 3 fastR2-1.2.4/fastR2/man/CoolingWater.Rd | 10 fastR2-1.2.4/fastR2/man/Corn.Rd | 3 fastR2-1.2.4/fastR2/man/Cuckoo.Rd | 3 fastR2-1.2.4/fastR2/man/DeathPenalty.Rd | 12 fastR2-1.2.4/fastR2/man/Drag.Rd | 8 fastR2-1.2.4/fastR2/man/Endurance.Rd | 8 fastR2-1.2.4/fastR2/man/FUSION.Rd | 35 + fastR2-1.2.4/fastR2/man/FamilySmoking.Rd | 5 fastR2-1.2.4/fastR2/man/Fumbles.Rd | 5 fastR2-1.2.4/fastR2/man/GPA.Rd | 9 fastR2-1.2.4/fastR2/man/HeliumFootballs.Rd | 7 fastR2-1.2.4/fastR2/man/Ice.Rd | 36 + fastR2-1.2.4/fastR2/man/Inflation.Rd | 3 fastR2-1.2.4/fastR2/man/Jordan8687.Rd | 6 fastR2-1.2.4/fastR2/man/Kids.Rd | 28 - fastR2-1.2.4/fastR2/man/LittleSurvey.Rd | 40 +- fastR2-1.2.4/fastR2/man/MIAA05.Rd | 42 +- fastR2-1.2.4/fastR2/man/MLB2004.Rd | 32 + fastR2-1.2.4/fastR2/man/MathNoise.Rd | 3 fastR2-1.2.4/fastR2/man/NCAAbb.Rd | 2 fastR2-1.2.4/fastR2/man/NFL2007.Rd | 14 fastR2-1.2.4/fastR2/man/Noise.Rd | 10 fastR2-1.2.4/fastR2/man/Pallets.Rd | 6 fastR2-1.2.4/fastR2/man/PaperPlanes.Rd | 12 fastR2-1.2.4/fastR2/man/Pendulum.Rd | 6 fastR2-1.2.4/fastR2/man/PetStress.Rd | 6 fastR2-1.2.4/fastR2/man/Pigs.Rd | 9 fastR2-1.2.4/fastR2/man/Pitching2005.Rd | 3 fastR2-1.2.4/fastR2/man/Poison.Rd | 3 fastR2-1.2.4/fastR2/man/Punting.Rd | 3 fastR2-1.2.4/fastR2/man/RatPoison.Rd | 3 fastR2-1.2.4/fastR2/man/RubberBand.Rd | 6 fastR2-1.2.4/fastR2/man/Scent.Rd | 30 + fastR2-1.2.4/fastR2/man/Soap.Rd | 7 fastR2-1.2.4/fastR2/man/Spheres.Rd | 3 fastR2-1.2.4/fastR2/man/Step.Rd | 9 fastR2-1.2.4/fastR2/man/Stereogram.Rd | 6 fastR2-1.2.4/fastR2/man/Students.Rd | 12 fastR2-1.2.4/fastR2/man/TasteTest.Rd | 13 fastR2-1.2.4/fastR2/man/TireWear.Rd | 6 fastR2-1.2.4/fastR2/man/Traffic.Rd | 12 fastR2-1.2.4/fastR2/man/Trebuchet.Rd | 3 fastR2-1.2.4/fastR2/man/Unemployment.Rd | 2 fastR2-1.2.4/fastR2/man/WorkingWomen.Rd | 6 fastR2-1.2.4/fastR2/man/fastR2-package.Rd |only 64 files changed, 1055 insertions(+), 476 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-13 1.0.1
Title: Access Forest Ecology Layers for British Columbia in 2001-2018
Description: R-based access to a large set of data variables relevant to forest ecology in British Columbia (BC), Canada. Layers
are in raster format at 100m resolution in the BC Albers projection, hosted at the Federated Research Data Repository (FRDR)
with <doi:10.20383/101.0283>. The collection includes: elevation; biogeoclimatic zone; wildfire; cutblocks; forest attributes from
Hansen et al. (2013) <doi:10.1139/cjfr-2013-0401> and Beaudoin et al. (2017) <doi:10.1139/cjfr-2017-0184>; and rasterized
Forest Insect and Disease Survey (FIDS) maps for a number of insect pest species, all covering the period 2001-2018.
Users supply a polygon or point location in the province of BC, and 'rasterbc' will download the overlapping raster tiles
hosted at FRDR, merging them as needed and returning the result in R as a 'SpatRaster' object. Metadata associated with these
layers, and code for downloading them from their original sources can be found in the 'github' repository
<https://githu [...truncated...]
Author: Dean Koch [aut, cre]
Maintainer: Dean Koch <dkoch@ualberta.ca>
Diff between rasterbc versions 1.0.1 dated 2022-01-18 and 1.0.2 dated 2023-11-09
rasterbc-1.0.1/rasterbc/build/partial.rdb |only rasterbc-1.0.1/rasterbc/inst/doc/vignette_intro.R |only rasterbc-1.0.2/rasterbc/DESCRIPTION | 8 rasterbc-1.0.2/rasterbc/MD5 | 32 - rasterbc-1.0.2/rasterbc/NEWS.md | 47 - rasterbc-1.0.2/rasterbc/R/data.R | 14 rasterbc-1.0.2/rasterbc/R/getdata_bc.R | 4 rasterbc-1.0.2/rasterbc/R/opendata_bc.R | 6 rasterbc-1.0.2/rasterbc/R/utils.R | 2 rasterbc-1.0.2/rasterbc/README.md | 90 +-- rasterbc-1.0.2/rasterbc/build/vignette.rds |binary rasterbc-1.0.2/rasterbc/data/metadata_bc.rda |binary rasterbc-1.0.2/rasterbc/inst/doc/vignette_intro.Rmd | 8 rasterbc-1.0.2/rasterbc/inst/doc/vignette_intro.html | 551 +++++++++++-------- rasterbc-1.0.2/rasterbc/man/getdata_bc.Rd | 4 rasterbc-1.0.2/rasterbc/man/metadata_bc.Rd | 12 rasterbc-1.0.2/rasterbc/man/ntspoly_bc.Rd | 2 rasterbc-1.0.2/rasterbc/vignettes/vignette_intro.Rmd | 8 18 files changed, 439 insertions(+), 349 deletions(-)