Title: Sampling from k-th Order Statistics of New Families of
Distributions
Description: Set of tools to generate samples of k-th order statistics and others quantities of interest from new families of distributions.
The main references for this package are: C. Kleiber and S. Kotz (2003) Statistical size distributions in economics and actuarial sciences; Gentle, J. (2009), Computational Statistics, Springer-Verlag;
Naradajah, S. and Rocha, R. (2016), <DOI:10.18637/jss.v069.i10> and Stasinopoulos, M. and Rigby, R. (2015), <DOI:10.1111/j.1467-9876.2005.00510.x>.
The families of distributions are: Benini distributions, Burr distributions, Dagum distributions, Feller-Pareto distributions, Generalized Pareto distributions, Inverse Pareto distributions, The Inverse Paralogistic distributions, Marshall-Olkin G distributions, exponentiated G distributions, beta G distributions,
gamma G distributions, Kumaraswamy G distributions, generalized beta G distributions,
beta extended G distributions, gamma G distributions, gamma uniform G distributions, beta exponential G dist [...truncated...]
Author: Carlos Alberto Cardozo Delgado
Maintainer: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>
Diff between orders versions 0.1.7 dated 2023-06-26 and 0.1.8 dated 2023-11-13
DESCRIPTION | 6 +- MD5 | 134 ++++++++++++++++++++++----------------------- NAMESPACE | 1 R/aux_func.R | 15 +++-- R/order_beg.R | 28 ++++++--- R/order_benini.R | 22 +++++-- R/order_betaexpg.R | 19 ++++-- R/order_betag.R | 28 ++++++--- R/order_burr.R | 22 +++++-- R/order_dagum.R | 22 +++++-- R/order_eepg.R | 26 +++++--- R/order_eg.R | 26 +++++--- R/order_expg.R | 24 +++++--- R/order_expkumg.R | 28 ++++++--- R/order_fellerpareto.R | 23 +++++-- R/order_gammag.R | 28 ++++++--- R/order_gammag1.R | 24 +++++--- R/order_gammag2.R | 24 +++++--- R/order_gbg.R | 28 ++++++--- R/order_gpareto.R | 22 +++++-- R/order_invpareto.R | 22 +++++-- R/order_iparalogistic.R | 22 +++++-- R/order_kumg.R | 28 ++++++--- R/order_loggammag1.R | 28 ++++++--- R/order_loggammag2.R | 28 ++++++--- R/order_mbetag.R | 26 +++++--- R/order_mog.R | 24 +++++--- R/order_pig.R | 22 +++++-- R/order_sichel.R | 22 +++++-- R/order_sinharcsinh.R | 22 +++++-- R/order_sm.R | 20 ++++-- R/order_snormal1.R | 22 +++++-- R/order_sstudentt.R | 22 +++++-- R/order_tessg.R | 28 ++++++--- R/order_weibullg.R | 28 ++++++--- R/order_zip.R | 20 ++++-- man/order_beg.Rd | 20 +++--- man/order_benini.Rd | 14 ++-- man/order_betaexpg.Rd | 11 ++- man/order_betag.Rd | 20 +++--- man/order_burr.Rd | 14 ++-- man/order_dagum.Rd | 14 ++-- man/order_eepg.Rd | 18 +++--- man/order_eg.Rd | 18 +++--- man/order_expg.Rd | 16 +++-- man/order_expkumg.Rd | 20 +++--- man/order_fellerpareto.Rd | 14 +++- man/order_gammag.Rd | 20 +++--- man/order_gammag1.Rd | 16 +++-- man/order_gammag2.Rd | 16 +++-- man/order_gbg.Rd | 20 +++--- man/order_gpareto.Rd | 14 ++-- man/order_invpareto.Rd | 14 ++-- man/order_iparalogistic.Rd | 14 ++-- man/order_kumg.Rd | 20 +++--- man/order_loggammag1.Rd | 20 +++--- man/order_loggammag2.Rd | 20 +++--- man/order_mbetag.Rd | 18 +++--- man/order_mog.Rd | 16 +++-- man/order_pig.Rd | 14 ++-- man/order_sichel.Rd | 14 ++-- man/order_sinharcsinh.Rd | 14 ++-- man/order_sm.Rd | 12 ++-- man/order_snormal1.Rd | 14 ++-- man/order_sstudentt.Rd | 14 ++-- man/order_tessg.Rd | 20 +++--- man/order_weibullg.Rd | 20 +++--- man/order_zip.Rd | 12 ++-- 68 files changed, 894 insertions(+), 561 deletions(-)
Title: Identification and Estimation using Group Testing
Description: Methods for the group testing identification problem: 1) Operating
characteristics (e.g., expected number of tests) for commonly used
hierarchical and array-based algorithms, and 2) Optimal testing
configurations for these same algorithms. Methods for the group testing
estimation problem: 1) Estimation and inference procedures for an overall
prevalence, and 2) Regression modeling for commonly used hierarchical and
array-based algorithms.
Author: Brianna Hitt [aut, cre] ,
Christopher Bilder [aut] ,
Frank Schaarschmidt [aut] ,
Brad Biggerstaff [aut] ,
Christopher McMahan [aut] ,
Joshua Tebbs [aut] ,
Boan Zhang [ctb],
Michael Black [ctb],
Peijie Hou [ctb],
Peng Chen [ctb],
Minh Nguyen [ctb]
Maintainer: Brianna Hitt <brianna.hitt@afacademy.af.edu>
Diff between binGroup2 versions 1.2.4 dated 2022-05-25 and 1.3.1 dated 2023-11-13
binGroup2-1.2.4/binGroup2/R/PooledBinomialFunctions.r |only binGroup2-1.3.1/binGroup2/DESCRIPTION | 20 binGroup2-1.3.1/binGroup2/MD5 | 65 binGroup2-1.3.1/binGroup2/NAMESPACE | 3 binGroup2-1.3.1/binGroup2/NEWS.md |only binGroup2-1.3.1/binGroup2/R/MultiplexHierarchicalFunctions.R | 778 +++++------ binGroup2-1.3.1/binGroup2/R/OTC1.R | 52 binGroup2-1.3.1/binGroup2/R/OTC2.R | 62 binGroup2-1.3.1/binGroup2/R/OTCMethodFunctions.R | 2 binGroup2-1.3.1/binGroup2/R/PooledBinomialFunctions.R |only binGroup2-1.3.1/binGroup2/R/SterrettFunctions.R | 15 binGroup2-1.3.1/binGroup2/R/SupportingOpCharFunctions.R | 250 +++ binGroup2-1.3.1/binGroup2/R/ThresholdDorfman.R | 17 binGroup2-1.3.1/binGroup2/R/arrayFunctions.R | 12 binGroup2-1.3.1/binGroup2/R/arrayMasterFunctions.R | 112 - binGroup2-1.3.1/binGroup2/R/gtReg.R | 24 binGroup2-1.3.1/binGroup2/R/gtSim.R | 23 binGroup2-1.3.1/binGroup2/R/halving.R | 15 binGroup2-1.3.1/binGroup2/R/opCharMethodFunctions.R | 4 binGroup2-1.3.1/binGroup2/R/operatingCharacteristics1.R | 609 ++++---- binGroup2-1.3.1/binGroup2/R/operatingCharacteristics2.R | 92 + binGroup2-1.3.1/binGroup2/build/partial.rdb |binary binGroup2-1.3.1/binGroup2/build/vignette.rds |only binGroup2-1.3.1/binGroup2/inst/doc |only binGroup2-1.3.1/binGroup2/man/GroupMembershipMatrix.Rd |only binGroup2-1.3.1/binGroup2/man/Sterrett.Rd | 1 binGroup2-1.3.1/binGroup2/man/TOD.Rd | 1 binGroup2-1.3.1/binGroup2/man/binGroup2.Rd | 1 binGroup2-1.3.1/binGroup2/man/halving.Rd | 1 binGroup2-1.3.1/binGroup2/man/operatingCharacteristics1.Rd | 317 ++-- binGroup2-1.3.1/binGroup2/man/operatingCharacteristics2.Rd | 1 binGroup2-1.3.1/binGroup2/man/print.propDiffCI.Rd | 10 binGroup2-1.3.1/binGroup2/man/propDiffCI.Rd | 72 - binGroup2-1.3.1/binGroup2/src/Makevars | 6 binGroup2-1.3.1/binGroup2/src/Makevars.win | 6 binGroup2-1.3.1/binGroup2/vignettes |only 36 files changed, 1587 insertions(+), 984 deletions(-)
Title: A Toolbox for Public Health and Epidemiology
Description: A toolbox for making R functions and capabilities more
accessible to students and professionals from Epidemiology and
Public Health related disciplines. Includes a function to report
coefficients and confidence intervals from models using robust
standard errors (when available), functions that expand 'ggplot2'
plots and functions relevant for introductory papers in Epidemiology
or Public Health. Please note that use of the
provided data sets is for educational purposes only.
Author: Josie Athens [aut, cre],
Frank Harell [ctb],
John Fox [ctb],
R-Core [ctb]
Maintainer: Josie Athens <josie.athens@gmail.com>
Diff between pubh versions 1.2.7 dated 2022-04-04 and 1.3.1 dated 2023-11-13
pubh-1.2.7/pubh/inst/rmarkdown |only pubh-1.2.7/pubh/man/cross_tab.Rd |only pubh-1.3.1/pubh/DESCRIPTION | 20 pubh-1.3.1/pubh/MD5 | 159 -- pubh-1.3.1/pubh/NAMESPACE | 148 - pubh-1.3.1/pubh/R/data.R | 760 ++++----- pubh-1.3.1/pubh/R/descriptive_functions.R | 772 ++++----- pubh-1.3.1/pubh/R/display_functions.R | 1292 ++++++++-------- pubh-1.3.1/pubh/R/epi_functions.R | 772 ++++----- pubh-1.3.1/pubh/R/misc_functions.R | 1008 ++++++------ pubh-1.3.1/pubh/R/plot_functions.R | 1406 ++++++++--------- pubh-1.3.1/pubh/README.md | 16 pubh-1.3.1/pubh/build/vignette.rds |binary pubh-1.3.1/pubh/inst/doc/introduction.R | 460 ++--- pubh-1.3.1/pubh/inst/doc/introduction.Rmd | 968 ++++++------ pubh-1.3.1/pubh/inst/doc/introduction.html | 2274 ++++++++++++++--------------- pubh-1.3.1/pubh/inst/doc/regression.R | 652 ++++---- pubh-1.3.1/pubh/inst/doc/regression.Rmd | 1036 ++++++------- pubh-1.3.1/pubh/inst/doc/regression.html | 2224 ++++++++++++++-------------- pubh-1.3.1/pubh/man/Bernard.Rd | 84 - pubh-1.3.1/pubh/man/Brenner.Rd | 72 pubh-1.3.1/pubh/man/Fentress.Rd | 68 pubh-1.3.1/pubh/man/Hodgkin.Rd | 102 - pubh-1.3.1/pubh/man/Kirkwood.Rd | 62 pubh-1.3.1/pubh/man/Macmahon.Rd | 66 pubh-1.3.1/pubh/man/Oncho.Rd | 80 - pubh-1.3.1/pubh/man/Roberts.Rd | 68 pubh-1.3.1/pubh/man/Rothman.Rd | 132 - pubh-1.3.1/pubh/man/Sandler.Rd | 72 pubh-1.3.1/pubh/man/Sharples.Rd | 68 pubh-1.3.1/pubh/man/Thall.Rd | 108 - pubh-1.3.1/pubh/man/Tuzson.Rd | 66 pubh-1.3.1/pubh/man/Vanderpump.Rd | 90 - pubh-1.3.1/pubh/man/axis_labs.Rd | 86 - pubh-1.3.1/pubh/man/bar_error.Rd | 120 - pubh-1.3.1/pubh/man/bland_altman.Rd | 132 - pubh-1.3.1/pubh/man/box_plot.Rd | 118 - pubh-1.3.1/pubh/man/bst.Rd | 62 pubh-1.3.1/pubh/man/chisq.fisher.Rd | 28 pubh-1.3.1/pubh/man/coef_det.Rd | 78 pubh-1.3.1/pubh/man/contingency.Rd | 120 - pubh-1.3.1/pubh/man/contingency2.Rd | 70 pubh-1.3.1/pubh/man/cosm_reg.Rd | 130 - pubh-1.3.1/pubh/man/cosm_sum.Rd | 76 pubh-1.3.1/pubh/man/cross_tbl.Rd | 148 - pubh-1.3.1/pubh/man/diag_test.Rd | 76 pubh-1.3.1/pubh/man/diag_test2.Rd | 62 pubh-1.3.1/pubh/man/estat.Rd | 98 - pubh-1.3.1/pubh/man/expand_df.Rd | 70 pubh-1.3.1/pubh/man/freq_cont.Rd | 54 pubh-1.3.1/pubh/man/gen_bst_df.Rd | 116 - pubh-1.3.1/pubh/man/geo_mean.Rd | 46 pubh-1.3.1/pubh/man/get_r2.Rd | 96 - pubh-1.3.1/pubh/man/gf_star.Rd | 136 - pubh-1.3.1/pubh/man/glm_coef.Rd | 168 +- pubh-1.3.1/pubh/man/harm_mean.Rd | 46 pubh-1.3.1/pubh/man/hist_norm.Rd | 114 - pubh-1.3.1/pubh/man/inv_logit.Rd | 28 pubh-1.3.1/pubh/man/jack_knife.Rd | 62 pubh-1.3.1/pubh/man/knife_mean.Rd | 48 pubh-1.3.1/pubh/man/leverage.Rd | 54 pubh-1.3.1/pubh/man/logistic_gof.Rd | 56 pubh-1.3.1/pubh/man/mhor.Rd | 104 - pubh-1.3.1/pubh/man/model_labels.Rd | 100 - pubh-1.3.1/pubh/man/multiple.Rd | 120 - pubh-1.3.1/pubh/man/odds_trend.Rd | 120 - pubh-1.3.1/pubh/man/predict_inv.Rd | 88 - pubh-1.3.1/pubh/man/prop_or.Rd | 62 pubh-1.3.1/pubh/man/pseudo_r2.Rd | 56 pubh-1.3.1/pubh/man/qq_plot.Rd | 106 - pubh-1.3.1/pubh/man/rank_influence.Rd | 54 pubh-1.3.1/pubh/man/rank_leverage.Rd | 60 pubh-1.3.1/pubh/man/reference_range.Rd | 60 pubh-1.3.1/pubh/man/rel_dis.Rd | 44 pubh-1.3.1/pubh/man/round_pval.Rd | 28 pubh-1.3.1/pubh/man/ss_jk.Rd | 54 pubh-1.3.1/pubh/man/stats_quotes.Rd | 36 pubh-1.3.1/pubh/man/strip_error.Rd | 168 +- pubh-1.3.1/pubh/man/theme_pubh.Rd | 78 pubh-1.3.1/pubh/vignettes/introduction.Rmd | 968 ++++++------ pubh-1.3.1/pubh/vignettes/regression.Rmd | 1036 ++++++------- 81 files changed, 10439 insertions(+), 10506 deletions(-)
Title: Standardized Comparison of Workflows in Mass Spectrometry-Based
Bottom-Up Proteomics
Description: Useful functions to analyze proteomic workflows including
number of identifications, data completeness, missed cleavages,
quantitative and retention time precision etc. Various software
outputs are supported such as 'ProteomeDiscoverer', 'Spectronaut',
'DIA-NN' and 'MaxQuant'.
Author: Oliver Kardell [aut, cre]
Maintainer: Oliver Kardell <Okdll@gmx.net>
Diff between mpwR versions 0.1.4 dated 2023-05-05 and 0.1.5 dated 2023-11-13
mpwR-0.1.4/mpwR/vignettes/images/uc1_CV_PG.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_CV_Pep.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_CV_RT.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_DC_pep_abs.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_DC_pep_perc.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_DC_pg_abs.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_DC_pg_perc.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_DC_prec_abs.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_DC_prec_perc.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_DC_prot_abs.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_DC_prot_perc.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_ID_pep.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_ID_pg.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_ID_prec.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_ID_prot.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_MC_abs.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_MC_perc.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_Upset_PG.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_Upset_pep.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_Upset_prec.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_Upset_prot.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_summary_CV.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_summary_DC.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc1_summary_ID.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_CV_PG.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_CV_Pep.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_CV_RT.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_DC_pep_abs.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_DC_pep_perc.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_DC_pg_abs.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_DC_pg_perc.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_DC_prec_abs.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_DC_prec_perc.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_DC_prot_abs.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_DC_prot_perc.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_ID_pep.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_ID_pg.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_ID_prec.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_ID_prot.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_MC_abs.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_MC_perc.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_Upset_PG.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_Upset_pep.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_Upset_prec.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_Upset_prot.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_summary_CV.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_summary_DC.PNG |only mpwR-0.1.4/mpwR/vignettes/images/uc2_summary_ID.PNG |only mpwR-0.1.5/mpwR/DESCRIPTION | 6 - mpwR-0.1.5/mpwR/MD5 | 78 +++--------------- mpwR-0.1.5/mpwR/NEWS.md | 6 + mpwR-0.1.5/mpwR/R/create_example.R | 8 + mpwR-0.1.5/mpwR/R/prepare_mpwR.R | 11 ++ mpwR-0.1.5/mpwR/R/utils_import.R | 9 +- mpwR-0.1.5/mpwR/R/utils_viz.R | 16 +-- mpwR-0.1.5/mpwR/build/vignette.rds |binary mpwR-0.1.5/mpwR/inst/doc/Output_Explanations.R |only mpwR-0.1.5/mpwR/inst/doc/Output_Explanations.Rmd |only mpwR-0.1.5/mpwR/inst/doc/Output_Explanations.html |only mpwR-0.1.5/mpwR/inst/doc/Requirements.Rmd | 7 + mpwR-0.1.5/mpwR/inst/doc/Requirements.html | 4 mpwR-0.1.5/mpwR/inst/doc/Workflow.html | 30 +++--- mpwR-0.1.5/mpwR/man/prepare_mpwR.Rd | 6 + mpwR-0.1.5/mpwR/tests/testthat/test_utils_import.R | 12 +- mpwR-0.1.5/mpwR/vignettes/Output_Explanations.Rmd |only mpwR-0.1.5/mpwR/vignettes/Requirements.Rmd | 7 + 66 files changed, 99 insertions(+), 101 deletions(-)
Title: Estimate Incidence and Prevalence using the OMOP Common Data
Model
Description: Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.
Author: Edward Burn [aut, cre] ,
Berta Raventos [aut] ,
Marti Catala [aut] ,
Mike Du [ctb] ,
Yuchen Guo [ctb] ,
Adam Black [ctb] ,
Ger Inberg [ctb] ,
Kim Lopez [ctb]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between IncidencePrevalence versions 0.5.0 dated 2023-10-18 and 0.5.2 dated 2023-11-13
DESCRIPTION | 6 MD5 | 72 R/benchmarkIncidencePrevalence.R | 2 R/estimateIncidence.R | 1017 +- R/estimatePrevalence.R | 67 R/generateDenominatorCohortSet.R | 1428 +-- R/getDenominatorCohorts.R | 930 +- R/getIncidence.R | 44 R/getPrevalence.R | 80 R/inputValidation.R | 740 +- R/mockIncidencePrevalenceRef.R | 984 +- R/obscureCounts.R | 156 README.md | 68 inst/doc/a01_Introduction_to_IncidencePrevalence.R | 5 inst/doc/a01_Introduction_to_IncidencePrevalence.Rmd | 7 inst/doc/a01_Introduction_to_IncidencePrevalence.html | 15 inst/doc/a02_Creating_denominator_populations.R | 2 inst/doc/a02_Creating_denominator_populations.Rmd | 1406 +-- inst/doc/a02_Creating_denominator_populations.html | 32 inst/doc/a04_Calculating_prevalence.R | 10 inst/doc/a04_Calculating_prevalence.Rmd | 10 inst/doc/a04_Calculating_prevalence.html | 62 inst/doc/a05_Calculating_incidence.html | 39 man/benchmarkIncidencePrevalence.Rd | 2 man/estimateIncidence.Rd | 5 man/estimatePeriodPrevalence.Rd | 5 man/estimatePointPrevalence.Rd | 5 man/generateDenominatorCohortSet.Rd | 2 tests/manual/test-dbms.R | 3 tests/manual/test-eunomia.R | 454 - tests/testthat/test-benchmarkIncidencePrevalence.R | 192 tests/testthat/test-estimateIncidence.R | 6503 +++++++++--------- tests/testthat/test-estimatePrevalence.R | 2919 ++++---- tests/testthat/test-generateDenominatorCohortSet.R | 3469 ++++----- vignettes/a01_Introduction_to_IncidencePrevalence.Rmd | 7 vignettes/a02_Creating_denominator_populations.Rmd | 1406 +-- vignettes/a04_Calculating_prevalence.Rmd | 10 37 files changed, 11025 insertions(+), 11139 deletions(-)
More information about IncidencePrevalence at CRAN
Permanent link
Title: Calculate Indices of Dynamic Interaction for Wildlife Tracking
Data
Description: Dynamic interaction refers to spatial-temporal associations
in the movements of two (or more) animals. This package provides tools for
calculating a suite of indices used for quantifying dynamic interaction with
wildlife telemetry data. For more information on each of the methods employed
see the references within. The package (as of version >= 0.3) also has new tools for
automating contact analysis in large tracking datasets. The package draws
heavily on the classes and methods developed in the 'adehabitat' packages.
Author: Jed Long [aut, cre]
Maintainer: Jed Long <jed.long@uwo.ca>
Diff between wildlifeDI versions 0.5.0 dated 2022-09-30 and 0.5.1 dated 2023-11-13
DESCRIPTION | 10 - MD5 | 28 +- NEWS | 5 R/Prox.R | 2 R/conDisplacement.R | 10 - R/sf2ltraj.R | 11 - README.md | 56 ++++- build/vignette.rds |binary inst/CITATION | 45 ++-- inst/doc/wildlifeDI-vignette-contact_analysis.html | 208 ++++++++++----------- inst/doc/wildlifeDI-vignette.html | 121 ++++++------ man/DI.Rd | 2 man/Prox.Rd | 2 man/conDisplacement.Rd | 84 ++++---- man/sf2ltraj.Rd | 4 15 files changed, 313 insertions(+), 275 deletions(-)
Title: Fast Tidy Tools for Date and Date-Time Manipulation
Description: A set of fast tidy functions for wrangling, completing and
summarising date and date-time data. It combines 'tidyverse' syntax
with the efficiency of 'data.table' and speed of 'collapse'.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between timeplyr versions 0.2.1 dated 2023-10-31 and 0.3.0 dated 2023-11-13
timeplyr-0.2.1/timeplyr/R/RcppExports.R |only timeplyr-0.2.1/timeplyr/R/doubles.R |only timeplyr-0.2.1/timeplyr/man/doubles.Rd |only timeplyr-0.2.1/timeplyr/src/RcppExports.cpp |only timeplyr-0.2.1/timeplyr/src/cpp_doubles.cpp |only timeplyr-0.2.1/timeplyr/tests/testthat/test-doubles.R |only timeplyr-0.3.0/timeplyr/DESCRIPTION | 14 timeplyr-0.3.0/timeplyr/MD5 | 221 +++-- timeplyr-0.3.0/timeplyr/NAMESPACE | 11 timeplyr-0.3.0/timeplyr/NEWS.md | 28 timeplyr-0.3.0/timeplyr/R/GRP_utils.R | 168 +++- timeplyr-0.3.0/timeplyr/R/age_years.R | 45 - timeplyr-0.3.0/timeplyr/R/cpp11.R |only timeplyr-0.3.0/timeplyr/R/cpp_which.R |only timeplyr-0.3.0/timeplyr/R/df_utils.R | 14 timeplyr-0.3.0/timeplyr/R/edf.R | 6 timeplyr-0.3.0/timeplyr/R/fast_stats.R | 2 timeplyr-0.3.0/timeplyr/R/fcount.R | 12 timeplyr-0.3.0/timeplyr/R/fdistinct.R | 2 timeplyr-0.3.0/timeplyr/R/fexpand.R | 8 timeplyr-0.3.0/timeplyr/R/fgroup_by.R | 3 timeplyr-0.3.0/timeplyr/R/frowid.R | 100 -- timeplyr-0.3.0/timeplyr/R/fslice.R | 86 +- timeplyr-0.3.0/timeplyr/R/function_utils.R | 156 ++-- timeplyr-0.3.0/timeplyr/R/get_time_delay.R | 8 timeplyr-0.3.0/timeplyr/R/group_collapse.R | 13 timeplyr-0.3.0/timeplyr/R/group_id.R | 55 - timeplyr-0.3.0/timeplyr/R/growth.R | 169 ++-- timeplyr-0.3.0/timeplyr/R/growth_rate.R | 131 +-- timeplyr-0.3.0/timeplyr/R/is_whole_number.R | 10 timeplyr-0.3.0/timeplyr/R/missing_dates.R | 2 timeplyr-0.3.0/timeplyr/R/q_summarise.R | 378 ++++++---- timeplyr-0.3.0/timeplyr/R/roll.R | 147 ++- timeplyr-0.3.0/timeplyr/R/roll_across.R |only timeplyr-0.3.0/timeplyr/R/roll_apply.R |only timeplyr-0.3.0/timeplyr/R/roll_lag.R | 37 timeplyr-0.3.0/timeplyr/R/roll_na_fill.R | 122 +-- timeplyr-0.3.0/timeplyr/R/roll_utils.R | 111 ++ timeplyr-0.3.0/timeplyr/R/sequence2.R | 27 timeplyr-0.3.0/timeplyr/R/stat_summarise.R | 122 +++ timeplyr-0.3.0/timeplyr/R/time_aggregate.R | 5 timeplyr-0.3.0/timeplyr/R/time_by.R | 4 timeplyr-0.3.0/timeplyr/R/time_core.R | 48 - timeplyr-0.3.0/timeplyr/R/time_count.R | 4 timeplyr-0.3.0/timeplyr/R/time_cut.R | 8 timeplyr-0.3.0/timeplyr/R/time_diff.R | 6 timeplyr-0.3.0/timeplyr/R/time_diff_gcd.R | 4 timeplyr-0.3.0/timeplyr/R/time_distinct.R | 5 timeplyr-0.3.0/timeplyr/R/time_elapsed.R | 59 + timeplyr-0.3.0/timeplyr/R/time_episodes.R | 12 timeplyr-0.3.0/timeplyr/R/time_expand.R | 22 timeplyr-0.3.0/timeplyr/R/time_gaps.R | 10 timeplyr-0.3.0/timeplyr/R/time_id.R | 5 timeplyr-0.3.0/timeplyr/R/time_is_regular.R | 12 timeplyr-0.3.0/timeplyr/R/time_lag.R | 6 timeplyr-0.3.0/timeplyr/R/time_mutate.R | 5 timeplyr-0.3.0/timeplyr/R/time_roll.R | 278 +++---- timeplyr-0.3.0/timeplyr/R/time_roll_diff.R | 2 timeplyr-0.3.0/timeplyr/R/time_seq.R | 29 timeplyr-0.3.0/timeplyr/R/time_seq_id.R | 5 timeplyr-0.3.0/timeplyr/R/time_summarise.R | 10 timeplyr-0.3.0/timeplyr/R/time_utils.R | 273 +++++-- timeplyr-0.3.0/timeplyr/R/timeplyr-package.R | 1 timeplyr-0.3.0/timeplyr/R/top_n.R | 4 timeplyr-0.3.0/timeplyr/R/zzz.R | 5 timeplyr-0.3.0/timeplyr/README.md | 8 timeplyr-0.3.0/timeplyr/man/age_years.Rd | 5 timeplyr-0.3.0/timeplyr/man/cpp_which.Rd |only timeplyr-0.3.0/timeplyr/man/figures/README-unnamed-chunk-15-1.png |binary timeplyr-0.3.0/timeplyr/man/figures/README-unnamed-chunk-16-1.png |binary timeplyr-0.3.0/timeplyr/man/frowid.Rd | 44 - timeplyr-0.3.0/timeplyr/man/get_time_delay.Rd | 2 timeplyr-0.3.0/timeplyr/man/growth_rate.Rd | 40 - timeplyr-0.3.0/timeplyr/man/is_whole_number.Rd | 10 timeplyr-0.3.0/timeplyr/man/roll_across.Rd |only timeplyr-0.3.0/timeplyr/man/roll_apply.Rd |only timeplyr-0.3.0/timeplyr/man/roll_lag.Rd | 13 timeplyr-0.3.0/timeplyr/man/roll_na_fill.Rd | 38 - timeplyr-0.3.0/timeplyr/man/roll_sum.Rd | 39 - timeplyr-0.3.0/timeplyr/man/time_aggregate.Rd | 6 timeplyr-0.3.0/timeplyr/man/time_by.Rd | 6 timeplyr-0.3.0/timeplyr/man/time_core.Rd | 32 timeplyr-0.3.0/timeplyr/man/time_count.Rd | 6 timeplyr-0.3.0/timeplyr/man/time_cut.Rd | 12 timeplyr-0.3.0/timeplyr/man/time_diff.Rd | 7 timeplyr-0.3.0/timeplyr/man/time_diff_gcd.Rd | 2 timeplyr-0.3.0/timeplyr/man/time_distinct.Rd | 6 timeplyr-0.3.0/timeplyr/man/time_elapsed.Rd | 11 timeplyr-0.3.0/timeplyr/man/time_episodes.Rd | 2 timeplyr-0.3.0/timeplyr/man/time_expand.Rd | 12 timeplyr-0.3.0/timeplyr/man/time_gaps.Rd | 6 timeplyr-0.3.0/timeplyr/man/time_id.Rd | 2 timeplyr-0.3.0/timeplyr/man/time_is_regular.Rd | 2 timeplyr-0.3.0/timeplyr/man/time_lag.Rd | 6 timeplyr-0.3.0/timeplyr/man/time_mutate.Rd | 6 timeplyr-0.3.0/timeplyr/man/time_roll.Rd | 36 timeplyr-0.3.0/timeplyr/man/time_roll_diff.Rd | 2 timeplyr-0.3.0/timeplyr/man/time_seq.Rd | 27 timeplyr-0.3.0/timeplyr/man/time_seq_id.Rd | 2 timeplyr-0.3.0/timeplyr/man/time_summarise.Rd | 12 timeplyr-0.3.0/timeplyr/src/cpp11.cpp |only timeplyr-0.3.0/timeplyr/src/is_whole_num.cpp |only timeplyr-0.3.0/timeplyr/src/lag.cpp |only timeplyr-0.3.0/timeplyr/src/na_fill.cpp |only timeplyr-0.3.0/timeplyr/src/num_na.cpp |only timeplyr-0.3.0/timeplyr/src/row_id.cpp |only timeplyr-0.3.0/timeplyr/src/sequence.cpp | 318 ++++---- timeplyr-0.3.0/timeplyr/src/utils.cpp | 230 +++--- timeplyr-0.3.0/timeplyr/src/which.cpp |only timeplyr-0.3.0/timeplyr/tests/testthat/test-age_years.R | 13 timeplyr-0.3.0/timeplyr/tests/testthat/test-frowid.R | 38 - timeplyr-0.3.0/timeplyr/tests/testthat/test-function_utils.R | 2 timeplyr-0.3.0/timeplyr/tests/testthat/test-group_id.R | 9 timeplyr-0.3.0/timeplyr/tests/testthat/test-growth_rate.R | 14 timeplyr-0.3.0/timeplyr/tests/testthat/test-is_whole_number.R | 5 timeplyr-0.3.0/timeplyr/tests/testthat/test-q_summarise.R | 6 timeplyr-0.3.0/timeplyr/tests/testthat/test-roll_mean.R | 10 timeplyr-0.3.0/timeplyr/tests/testthat/test-roll_na_fill.R | 87 ++ timeplyr-0.3.0/timeplyr/tests/testthat/test-sequence2.R | 21 timeplyr-0.3.0/timeplyr/tests/testthat/test-stat_summarise.R | 138 +++ timeplyr-0.3.0/timeplyr/tests/testthat/test-time_gaps.R |only timeplyr-0.3.0/timeplyr/tests/testthat/test-time_is_regular.R |only timeplyr-0.3.0/timeplyr/tests/testthat/test-which2.R |only 123 files changed, 2642 insertions(+), 1681 deletions(-)
Title: Multiscale Change-Point Inference
Description: Allows fitting of step-functions to univariate serial data where neither the number of jumps nor their positions is known by implementing the multiscale regression estimators SMUCE, simulataneous multiscale changepoint estimator, (K. Frick, A. Munk and H. Sieling, 2014) <doi:10.1111/rssb.12047> and HSMUCE, heterogeneous SMUCE, (F. Pein, H. Sieling and A. Munk, 2017) <doi:10.1111/rssb.12202>. In addition, confidence intervals for the change-point locations and bands for the unknown signal can be obtained.
Author: Pein Florian [aut, cre],
Thomas Hotz [aut],
Hannes Sieling [aut],
Timo Aspelmeier [ctb]
Maintainer: Pein Florian <f.pein@lancaster.ac.uk>
Diff between stepR versions 2.1-8 dated 2023-08-18 and 2.1-9 dated 2023-11-13
ChangeLog | 4 ++++ DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/doc/StepR.pdf |binary tests/tests.R | 4 ++-- 5 files changed, 13 insertions(+), 9 deletions(-)
Title: Create Interactive Web Maps with the JavaScript 'Leaflet'
Library
Description: Create and customize interactive maps using the 'Leaflet'
JavaScript library and the 'htmlwidgets' package. These maps can be
used directly from the R console, from 'RStudio', in Shiny
applications and R Markdown documents.
Author: Joe Cheng [aut, cre],
Barret Schloerke [aut] ,
Bhaskar Karambelkar [aut],
Yihui Xie [aut],
Hadley Wickham [ctb],
Kenton Russell [ctb],
Kent Johnson [ctb],
Vladimir Agafonkin [ctb, cph] ,
CloudMade [cph] ,
Leaflet contributors [ctb] ,
Brandon Copeland [...truncated...]
Maintainer: Joe Cheng <joe@posit.co>
Diff between leaflet versions 2.2.0 dated 2023-08-31 and 2.2.1 dated 2023-11-13
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/layers.R | 9 ++++++--- R/plugin-providers.R | 12 ++++++++++++ R/zzz.R | 4 ++++ man/map-options.Rd | 9 ++++++--- 7 files changed, 42 insertions(+), 16 deletions(-)
Title: Identify Characteristics of Patients in the OMOP Common Data
Model
Description: Identify the characteristics of patients in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Mike Du [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [ctb] ,
Xintong Li [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between PatientProfiles versions 0.4.0 dated 2023-10-06 and 0.5.0 dated 2023-11-13
DESCRIPTION | 6 MD5 | 53 - NAMESPACE | 1 R/addConceptIntersect.R | 26 R/addIntersect.R | 24 R/checks.R | 62 + R/formats.R | 34 R/summariseCharacteristics.R | 572 ++++++++++----- R/summariseLargeScaleCharacteristics.R | 545 +++++++++----- R/summariseResult.R | 13 build/vignette.rds |binary inst/doc/addCohortIntersections.R | 20 inst/doc/addCohortIntersections.html | 42 - inst/doc/addPatientCharacteristics.R | 12 inst/doc/addPatientCharacteristics.html | 68 - man/addLargeScaleCharacteristics.Rd |only man/getConceptName.Rd | 48 - man/getEndName.Rd | 48 - man/getStartName.Rd | 48 - man/summariseCharacteristics.Rd | 15 tests/testthat.R | 24 tests/testthat/test-addDemographics.R | 2 tests/testthat/test-addIntersect.R | 54 + tests/testthat/test-addPriorObservation.R | 2 tests/testthat/test-addSex.R | 8 tests/testthat/test-summariseCharacteristics.R | 56 + tests/testthat/test-summariseLargeScaleCharacteristics.R | 169 ++++ tests/testthat/test-summariseResult.R | 13 28 files changed, 1347 insertions(+), 618 deletions(-)
More information about PatientProfiles at CRAN
Permanent link
Title: Interaction Statistics
Description: Fast, model-agnostic implementation of different H-statistics
introduced by Jerome H. Friedman and Bogdan E. Popescu (2008)
<doi:10.1214/07-AOAS148>. These statistics quantify interaction
strength per feature, feature pair, and feature triple. The package
supports multi-output predictions and can account for case weights.
In addition, several variants of the original statistics are provided.
The shape of the interactions can be explored through partial
dependence plots or individual conditional expectation plots. 'DALEX'
explainers, meta learners ('mlr3', 'tidymodels', 'caret') and most
other models work out-of-the-box.
Author: Michael Mayer [aut, cre]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between hstats versions 1.0.0 dated 2023-10-21 and 1.1.0 dated 2023-11-13
hstats-1.0.0/hstats/R/H2.R |only hstats-1.0.0/hstats/R/H2_overall.R |only hstats-1.0.0/hstats/R/H2_pairwise.R |only hstats-1.0.0/hstats/R/H2_threeway.R |only hstats-1.0.0/hstats/man/figures/pdp_2d.png |only hstats-1.1.0/hstats/DESCRIPTION | 6 hstats-1.1.0/hstats/MD5 | 86 ++- hstats-1.1.0/hstats/NEWS.md | 19 hstats-1.1.0/hstats/R/average_loss.R | 16 hstats-1.1.0/hstats/R/h2.R |only hstats-1.1.0/hstats/R/h2_overall.R |only hstats-1.1.0/hstats/R/h2_pairwise.R |only hstats-1.1.0/hstats/R/h2_threeway.R |only hstats-1.1.0/hstats/R/hstats.R | 12 hstats-1.1.0/hstats/R/ice.R | 16 hstats-1.1.0/hstats/R/losses.R | 89 +--- hstats-1.1.0/hstats/R/partial_dep.R | 66 ++- hstats-1.1.0/hstats/R/pd_importance.R | 6 hstats-1.1.0/hstats/R/pd_raw.R | 13 hstats-1.1.0/hstats/R/perm_importance.R | 15 hstats-1.1.0/hstats/R/utils_calculate.R | 307 +++++++++----- hstats-1.1.0/hstats/R/utils_grid.R | 76 +++ hstats-1.1.0/hstats/R/utils_input.R | 53 ++ hstats-1.1.0/hstats/R/utils_statistics.R | 39 - hstats-1.1.0/hstats/README.md | 86 ++- hstats-1.1.0/hstats/man/average_loss.Rd | 14 hstats-1.1.0/hstats/man/figures/pdp_2d.svg |only hstats-1.1.0/hstats/man/figures/pdp_2d_line.svg |only hstats-1.1.0/hstats/man/h2.Rd | 200 ++++----- hstats-1.1.0/hstats/man/h2_overall.Rd | 228 +++++----- hstats-1.1.0/hstats/man/h2_pairwise.Rd | 260 +++++------ hstats-1.1.0/hstats/man/h2_threeway.Rd | 226 +++++----- hstats-1.1.0/hstats/man/hstats.Rd | 10 hstats-1.1.0/hstats/man/ice.Rd | 6 hstats-1.1.0/hstats/man/multivariate_grid.Rd | 2 hstats-1.1.0/hstats/man/partial_dep.Rd | 18 hstats-1.1.0/hstats/man/pd_importance.Rd | 6 hstats-1.1.0/hstats/man/perm_importance.Rd | 12 hstats-1.1.0/hstats/man/plot.partial_dep.Rd | 11 hstats-1.1.0/hstats/man/univariate_grid.Rd | 8 hstats-1.1.0/hstats/tests/testthat/test_average_loss.R | 16 hstats-1.1.0/hstats/tests/testthat/test_calculate.R | 270 ++++++++---- hstats-1.1.0/hstats/tests/testthat/test_grid.R | 33 + hstats-1.1.0/hstats/tests/testthat/test_hstats.R | 56 +- hstats-1.1.0/hstats/tests/testthat/test_ice.R | 11 hstats-1.1.0/hstats/tests/testthat/test_input.R |only hstats-1.1.0/hstats/tests/testthat/test_losses.R | 71 ++- hstats-1.1.0/hstats/tests/testthat/test_partial_dep.R | 21 hstats-1.1.0/hstats/tests/testthat/test_perm_importance.R | 19 hstats-1.1.0/hstats/tests/testthat/test_statistics.R | 44 +- 50 files changed, 1498 insertions(+), 949 deletions(-)
Title: Datasets to Measure the Alignment of Corporate Loan Books with
Climate Goals
Description: These datasets support the implementation in R of the
software 'PACTA' (Paris Agreement Capital Transition Assessment),
which is a free tool that calculates the alignment between corporate
lending portfolios and climate scenarios
(<https://www.transitionmonitor.com/>). Financial institutions use
'PACTA' to study how their capital allocation decisions align with
climate change mitigation goals. Because both financial institutions
and market data providers keep their data private, this package
provides fake, public data to enable the development and use of
'PACTA' in R.
Author: Alex Axthelm [aut, cre, dtc] ,
Jackson Hoffart [aut, ctr, dtc]
,
Mauro Lepore [aut, ctr] ,
Rocky Mountain Institute [cph, fnd]
Maintainer: Alex Axthelm <aaxthelm@rmi.org>
Diff between r2dii.data versions 0.4.0 dated 2023-10-17 and 0.4.1 dated 2023-11-13
DESCRIPTION | 9 ++- MD5 | 20 ++++---- NEWS.md | 5 ++ data/abcd_demo.rda |binary data/loanbook_demo.rda |binary man/abcd_demo.Rd | 2 man/ald_demo.Rd | 2 man/loanbook_demo.Rd | 2 tests/testthat/_snaps/abcd_demo.md | 80 ++++++++++----------------------- tests/testthat/_snaps/loanbook_demo.md | 50 ++++++++++---------- tests/testthat/test-abcd_demo.R | 16 +++--- 11 files changed, 83 insertions(+), 103 deletions(-)
Title: Dirichlet Process Bayesian Clustering, Profile Regression
Description: Bayesian clustering using a Dirichlet process mixture model. This model is an alternative to regression models, non-parametrically linking a response vector to covariate data through cluster membership. The package allows Bernoulli, Binomial, Poisson, Normal, survival and categorical response, as well as Normal and discrete covariates. It also allows for fixed effects in the response model, where a spatial CAR (conditional autoregressive) term can be also included. Additionally, predictions may be made for the response, and missing values for the covariates are handled. Several samplers and label switching moves are implemented along with diagnostic tools to assess convergence. A number of R functions for post-processing of the output are also provided. In addition to fitting mixtures, it may additionally be of interest to determine which covariates actively drive the mixture components. This is implemented in the package as variable selection. The main reference for the package is Liv [...truncated...]
Author: David I. Hastie, Silvia Liverani <liveranis@gmail.com> and Sylvia Richardson with contributions from Aurore J. Lavigne, Lucy Leigh, Lamiae Azizi, Xi Liu, Ruizhu Huang, Austin Gratton, Wei Jing
Maintainer: Silvia Liverani <liveranis@gmail.com>
Diff between PReMiuM versions 3.2.10 dated 2023-08-26 and 3.2.11 dated 2023-11-13
ChangeLog | 5 +++++ DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/postProcess.R | 11 ++++++++++- build/partial.rdb |binary man/rALD.Rd | 6 +++--- 6 files changed, 26 insertions(+), 12 deletions(-)
Title: Nonparametric and Semiparametric Proportional Hazards Model
Description: An estimation procedure for the analysis of nonparametric proportional hazards model (e.g. h(t) = h0(t)exp(b(t)'Z)), providing estimation of b(t) and its pointwise standard errors, and semiparametric proportional hazards model (e.g. h(t) = h0(t)exp(b(t)'Z1 + c*Z2)), providing estimation of b(t), c and their standard errors. More details can be found in Lu Tian et al. (2005) <doi:10.1198/016214504000000845>.
Author: Qi Yang [aut, cre],
Kuan Yang [aut],
Xiaoxuan Liu [ctb],
Xinyuan Song [ctb]
Maintainer: Qi Yang <qiyang-sdu@outlook.com>
Diff between NPCox versions 1.1 dated 2022-12-08 and 1.2 dated 2023-11-13
NPCox-1.1/NPCox/R/coxplot.R |only NPCox-1.2/NPCox/DESCRIPTION | 12 ++-- NPCox-1.2/NPCox/MD5 | 18 +++---- NPCox-1.2/NPCox/NAMESPACE | 5 + NPCox-1.2/NPCox/R/npcox.R | 86 +++++++++++++++++----------------- NPCox-1.2/NPCox/R/npplot.R |only NPCox-1.2/NPCox/R/npsimu.R |only NPCox-1.2/NPCox/R/spcox.R | 106 +++++++++++++++++++++++++++++++++--------- NPCox-1.2/NPCox/man/npcox.Rd | 4 - NPCox-1.2/NPCox/man/npplot.Rd | 8 +-- NPCox-1.2/NPCox/man/npsimu.Rd |only NPCox-1.2/NPCox/man/spcox.Rd | 4 - 12 files changed, 156 insertions(+), 87 deletions(-)
Title: Utility Functions for Production R Code
Description: A suite of utility functions providing functionality commonly
needed for production level projects such as logging, error handling,
cache management and date-time parsing. Functions for date-time parsing and
formatting require that time zones be specified explicitly, avoiding a common
source of error when working with environmental time series.
Author: Jonathan Callahan [aut, cre],
Eli Grosman [ctb],
Spencer Pease [ctb],
Thomas Bergamaschi [ctb]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaCoreUtils versions 0.5.0 dated 2023-10-28 and 0.5.1 dated 2023-11-13
DESCRIPTION | 6 ++-- MD5 | 20 ++++++++-------- NEWS.md | 5 ++++ R/createLocationID.R | 41 ++++++++++++++++++++++++--------- R/setIfNull.R | 1 inst/doc/error-handling.html | 12 ++++----- inst/doc/logging.html | 32 ++++++++++++------------- man/createLocationID.Rd | 35 ++++++++++++++++++++-------- man/setIfNull.Rd | 1 tests/testthat/test-createLocationID.R | 29 +++++++++++++++++++++++ tests/testthat/test-setIfNull.R | 1 11 files changed, 126 insertions(+), 57 deletions(-)
More information about MazamaCoreUtils at CRAN
Permanent link
Title: Statistical Methodology for Graphical Extreme Value Models
Description: Statistical methodology for sparse multivariate extreme value models. Methods are
provided for exact simulation and statistical inference for multivariate Pareto distributions
on graphical structures as described in the paper 'Graphical Models for Extremes' by
Engelke and Hitz (2020) <doi:10.1111/rssb.12355>.
Author: Sebastian Engelke [aut, cre],
Adrien S. Hitz [aut],
Nicola Gnecco [aut],
Manuel Hentschel [aut]
Maintainer: Sebastian Engelke <sebastian.engelke@unige.ch>
Diff between graphicalExtremes versions 0.2.0 dated 2022-12-02 and 0.3.0 dated 2023-11-13
graphicalExtremes-0.2.0/graphicalExtremes/R/flight_plotting.R |only graphicalExtremes-0.2.0/graphicalExtremes/inst/doc/exercises.R |only graphicalExtremes-0.2.0/graphicalExtremes/inst/doc/exercises.Rmd |only graphicalExtremes-0.2.0/graphicalExtremes/inst/doc/exercises.html |only graphicalExtremes-0.2.0/graphicalExtremes/inst/doc/graphicalExtremes.R |only graphicalExtremes-0.2.0/graphicalExtremes/inst/doc/graphicalExtremes.Rmd |only graphicalExtremes-0.2.0/graphicalExtremes/inst/doc/graphicalExtremes.html |only graphicalExtremes-0.2.0/graphicalExtremes/man/Gamma2Sigma.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/man/Gamma2Theta.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/man/Gamma2chi.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/man/Gamma2graph.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/man/Gamma2par.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/man/Sigma2Gamma.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/man/Theta2Gamma.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/man/check_Gamma_and_graph.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/man/dim_Gamma.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/man/generate_random_cactus.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/man/generate_random_chordal_graph.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/man/generate_random_connected_graph.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/man/generate_random_tree.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/man/partialMatrixToGraph.Rd |only graphicalExtremes-0.2.0/graphicalExtremes/vignettes/exercises.Rmd |only graphicalExtremes-0.2.0/graphicalExtremes/vignettes/graphicalExtremes.Rmd |only graphicalExtremes-0.2.0/graphicalExtremes/vignettes/images |only graphicalExtremes-0.3.0/graphicalExtremes/DESCRIPTION | 6 graphicalExtremes-0.3.0/graphicalExtremes/MD5 | 195 ++-- graphicalExtremes-0.3.0/graphicalExtremes/NAMESPACE | 31 graphicalExtremes-0.3.0/graphicalExtremes/R/data.R | 74 + graphicalExtremes-0.3.0/graphicalExtremes/R/data_danube.R |only graphicalExtremes-0.3.0/graphicalExtremes/R/data_flights.R |only graphicalExtremes-0.3.0/graphicalExtremes/R/data_plotting_utils.R |only graphicalExtremes-0.3.0/graphicalExtremes/R/estimation_emtp2.R | 6 graphicalExtremes-0.3.0/graphicalExtremes/R/estimation_helpers.R | 14 graphicalExtremes-0.3.0/graphicalExtremes/R/estimation_param.R | 80 + graphicalExtremes-0.3.0/graphicalExtremes/R/estimation_param_MLE.R | 35 graphicalExtremes-0.3.0/graphicalExtremes/R/estimation_structure.R | 52 - graphicalExtremes-0.3.0/graphicalExtremes/R/generate_examples.R | 104 +- graphicalExtremes-0.3.0/graphicalExtremes/R/graphicalExtremes-package.R | 43 graphicalExtremes-0.3.0/graphicalExtremes/R/graphs_helpers.R | 3 graphicalExtremes-0.3.0/graphicalExtremes/R/input_checks.R | 451 ++++++++-- graphicalExtremes-0.3.0/graphicalExtremes/R/matrix_completions_general.R | 25 graphicalExtremes-0.3.0/graphicalExtremes/R/matrix_completions_main.R | 21 graphicalExtremes-0.3.0/graphicalExtremes/R/matrix_transformations.R |only graphicalExtremes-0.3.0/graphicalExtremes/R/options.R | 151 ++- graphicalExtremes-0.3.0/graphicalExtremes/R/simulation_functions.R | 58 - graphicalExtremes-0.3.0/graphicalExtremes/R/simulation_helpers.R | 12 graphicalExtremes-0.3.0/graphicalExtremes/R/transformation_functions.R | 414 --------- graphicalExtremes-0.3.0/graphicalExtremes/R/utils.R | 157 +-- graphicalExtremes-0.3.0/graphicalExtremes/build/partial.rdb |binary graphicalExtremes-0.3.0/graphicalExtremes/build/vignette.rds |binary graphicalExtremes-0.3.0/graphicalExtremes/data/flights.rda |binary graphicalExtremes-0.3.0/graphicalExtremes/inst/REFERENCES.bib | 49 - graphicalExtremes-0.3.0/graphicalExtremes/inst/apa-no-ampersand.csl |only graphicalExtremes-0.3.0/graphicalExtremes/inst/doc/applicationDanube.R |only graphicalExtremes-0.3.0/graphicalExtremes/inst/doc/applicationDanube.Rmd |only graphicalExtremes-0.3.0/graphicalExtremes/inst/doc/applicationDanube.html |only graphicalExtremes-0.3.0/graphicalExtremes/inst/doc/applicationFlights.R |only graphicalExtremes-0.3.0/graphicalExtremes/inst/doc/applicationFlights.Rmd |only graphicalExtremes-0.3.0/graphicalExtremes/inst/doc/applicationFlights.html |only graphicalExtremes-0.3.0/graphicalExtremes/inst/extdata |only graphicalExtremes-0.3.0/graphicalExtremes/man/Gamma2chi_3D.Rd | 2 graphicalExtremes-0.3.0/graphicalExtremes/man/Zmatrix.Rd | 3 graphicalExtremes-0.3.0/graphicalExtremes/man/checkGamma.Rd |only graphicalExtremes-0.3.0/graphicalExtremes/man/check_graph.Rd | 9 graphicalExtremes-0.3.0/graphicalExtremes/man/check_partial_matrix_and_graph.Rd |only graphicalExtremes-0.3.0/graphicalExtremes/man/chi2Gamma.Rd | 37 graphicalExtremes-0.3.0/graphicalExtremes/man/complete_Gamma.Rd | 8 graphicalExtremes-0.3.0/graphicalExtremes/man/complete_Gamma_decomposable.Rd | 4 graphicalExtremes-0.3.0/graphicalExtremes/man/complete_Gamma_general.Rd | 4 graphicalExtremes-0.3.0/graphicalExtremes/man/complete_Gamma_general_demo.Rd | 4 graphicalExtremes-0.3.0/graphicalExtremes/man/complete_Gamma_general_split.Rd | 4 graphicalExtremes-0.3.0/graphicalExtremes/man/computeLimits.Rd | 6 graphicalExtremes-0.3.0/graphicalExtremes/man/danube.Rd | 22 graphicalExtremes-0.3.0/graphicalExtremes/man/data2mpareto.Rd | 18 graphicalExtremes-0.3.0/graphicalExtremes/man/eglearn.Rd | 28 graphicalExtremes-0.3.0/graphicalExtremes/man/emp_chi.Rd | 11 graphicalExtremes-0.3.0/graphicalExtremes/man/emp_chi_multdim.Rd | 12 graphicalExtremes-0.3.0/graphicalExtremes/man/emp_vario.Rd | 23 graphicalExtremes-0.3.0/graphicalExtremes/man/emst.Rd | 9 graphicalExtremes-0.3.0/graphicalExtremes/man/emtp2.Rd | 11 graphicalExtremes-0.3.0/graphicalExtremes/man/ensure_matrix_symmetry_and_truncate_zeros.Rd |only graphicalExtremes-0.3.0/graphicalExtremes/man/fast_diag.Rd | 1 graphicalExtremes-0.3.0/graphicalExtremes/man/fillFixedParams.Rd | 1 graphicalExtremes-0.3.0/graphicalExtremes/man/fitInInterval.Rd | 1 graphicalExtremes-0.3.0/graphicalExtremes/man/fit_graph_to_Theta.Rd | 8 graphicalExtremes-0.3.0/graphicalExtremes/man/flightCountMatrixToConnectionList.Rd | 15 graphicalExtremes-0.3.0/graphicalExtremes/man/flights.Rd | 27 graphicalExtremes-0.3.0/graphicalExtremes/man/fmpareto_HR_MLE.Rd | 27 graphicalExtremes-0.3.0/graphicalExtremes/man/fmpareto_HR_helpers.Rd |only graphicalExtremes-0.3.0/graphicalExtremes/man/fmpareto_graph_HR.Rd | 19 graphicalExtremes-0.3.0/graphicalExtremes/man/generateRandomGraph.Rd |only graphicalExtremes-0.3.0/graphicalExtremes/man/generate_random_Gamma.Rd | 9 graphicalExtremes-0.3.0/graphicalExtremes/man/generate_random_graphical_Gamma.Rd | 13 graphicalExtremes-0.3.0/graphicalExtremes/man/generate_random_integer_Gamma.Rd | 9 graphicalExtremes-0.3.0/graphicalExtremes/man/generate_random_model.Rd | 11 graphicalExtremes-0.3.0/graphicalExtremes/man/generate_random_spd_matrix.Rd | 9 graphicalExtremes-0.3.0/graphicalExtremes/man/getDanubeFlowGraph.Rd |only graphicalExtremes-0.3.0/graphicalExtremes/man/getFlightDelayData.Rd |only graphicalExtremes-0.3.0/graphicalExtremes/man/getPackageData.Rd |only graphicalExtremes-0.3.0/graphicalExtremes/man/get_alert_function.Rd |only graphicalExtremes-0.3.0/graphicalExtremes/man/get_mc_cores.Rd | 9 graphicalExtremes-0.3.0/graphicalExtremes/man/get_tol.Rd | 5 graphicalExtremes-0.3.0/graphicalExtremes/man/graphicalExtremes.Rd | 7 graphicalExtremes-0.3.0/graphicalExtremes/man/graphs_equal.Rd | 3 graphicalExtremes-0.3.0/graphicalExtremes/man/loglik_HR.Rd | 15 graphicalExtremes-0.3.0/graphicalExtremes/man/make_numeric_indices.Rd |only graphicalExtremes-0.3.0/graphicalExtremes/man/matrix2graph.Rd |only graphicalExtremes-0.3.0/graphicalExtremes/man/par2Matrix.Rd | 24 graphicalExtremes-0.3.0/graphicalExtremes/man/parameterMatrixConversion.Rd |only graphicalExtremes-0.3.0/graphicalExtremes/man/plotDanube.Rd |only graphicalExtremes-0.3.0/graphicalExtremes/man/plotFlights.Rd | 25 graphicalExtremes-0.3.0/graphicalExtremes/man/rmpareto.Rd | 20 graphicalExtremes-0.3.0/graphicalExtremes/man/rmpareto_tree.Rd | 11 graphicalExtremes-0.3.0/graphicalExtremes/man/rmstable.Rd | 9 graphicalExtremes-0.3.0/graphicalExtremes/man/rmstable_tree.Rd | 11 graphicalExtremes-0.3.0/graphicalExtremes/man/roxygen |only graphicalExtremes-0.3.0/graphicalExtremes/man/simu_px_HR.Rd | 6 graphicalExtremes-0.3.0/graphicalExtremes/man/simu_px_dirichlet.Rd | 6 graphicalExtremes-0.3.0/graphicalExtremes/man/simu_px_logistic.Rd | 6 graphicalExtremes-0.3.0/graphicalExtremes/man/simu_px_neglogistic.Rd | 6 graphicalExtremes-0.3.0/graphicalExtremes/man/simu_px_tree_HR.Rd | 2 graphicalExtremes-0.3.0/graphicalExtremes/vignettes/applicationDanube.Rmd |only graphicalExtremes-0.3.0/graphicalExtremes/vignettes/applicationFlights.Rmd |only 123 files changed, 1418 insertions(+), 1093 deletions(-)
More information about graphicalExtremes at CRAN
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Title: Display Idiomatic Code to Construct Most R Objects
Description: Prints code that can be used to recreate R objects. In a
sense it is similar to 'base::dput()' or 'base::deparse()' but
'constructive' strives to use idiomatic constructors.
Author: Antoine Fabri [aut, cre]
Maintainer: Antoine Fabri <antoine.fabri@gmail.com>
Diff between constructive versions 0.1.0 dated 2023-06-06 and 0.2.0 dated 2023-11-13
DESCRIPTION | 29 +- MD5 | 230 +++++++++--------- NAMESPACE | 2 NEWS.md | 12 R/abort.R | 5 R/construct-helpers.R | 7 R/construct.R | 36 ++ R/construct_diff.R | 4 R/construct_dump.R | 2 R/construct_signature.R | 3 R/constructive-package.R | 2 R/deparse_call.R | 47 ++- R/environment_utils.R | 4 R/expect.R |only R/opts.R | 4 R/repair_attributes.R | 6 R/roxygen2-tags.R | 6 R/s3-POSIXct.R | 2 R/s3-POSIXlt.R | 2 R/s3-array.R | 2 R/s3-atomic.R | 12 R/s3-constructive_options.R | 2 R/s3-data.frame.R | 7 R/s3-data.table.R | 2 R/s3-dm.R | 14 - R/s3-dots.R | 2 R/s3-environment.R | 58 +++- R/s3-factor.R | 19 - R/s3-formula.R | 2 R/s3-function.R | 15 - R/s3-ggplot2-Layer.R | 2 R/s3-ggplot2-Scale.R | 11 R/s3-ggplot2-ScalesList.R | 2 R/s3-ggplot2-ggplot.R | 4 R/s3-ggplot2-ggproto.R | 2 R/s3-ggplot2-uneval.R | 2 R/s3-grouped_df.R | 2 R/s3-language.R | 6 R/s3-matrix.R | 2 R/s3-mts.R | 2 R/s3-ordered.R | 26 -- R/s3-rowwise_df.R | 2 R/s3-tbl_df.R | 9 R/s3-ts.R | 2 R/s3-vctrs_list_of.R | 2 R/s3-weakref.R | 2 R/s4.R | 2 R/utils.R | 104 +++++++- R/zzz.R | 6 inst/doc/User-defined-methods-and-constructors.R | 10 inst/doc/User-defined-methods-and-constructors.html | 246 +++++++++---------- man/construct.Rd | 21 - man/construct_diff.Rd | 5 man/construct_dump.Rd | 2 man/construct_signature.Rd | 6 man/constructors.Rd | 2 man/deparse_call.Rd | 21 + man/dot-cstr_pipe.Rd | 10 man/dot-cstr_repair_attributes.Rd | 5 man/opts_dm.Rd | 2 man/opts_environment.Rd | 4 man/opts_factor.Rd | 6 man/opts_ordered.Rd | 6 man/opts_weakref.Rd | 2 tests/testthat/_snaps/construct_multi.md | 23 + tests/testthat/_snaps/deparse_call.md | 67 +++-- tests/testthat/_snaps/s3-POSIXct.md | 2 tests/testthat/_snaps/s3-POSIXlt.md | 2 tests/testthat/_snaps/s3-dots.md | 14 + tests/testthat/_snaps/s3-environment.md | 72 ++--- tests/testthat/_snaps/s3-factor.md | 8 tests/testthat/_snaps/s3-function.md | 14 - tests/testthat/_snaps/s3-ggplot2-Coord.md | 253 -------------------- tests/testthat/_snaps/s3-ggplot2-Scale.md | 14 - tests/testthat/_snaps/s3-ggplot2-ggplot.md | 22 - tests/testthat/_snaps/s3-mts.md | 2 tests/testthat/_snaps/s3-ordered.md | 11 tests/testthat/_snaps/s3-ts.md | 2 tests/testthat/setup.R |only tests/testthat/test-abort.R | 4 tests/testthat/test-construct_multi.R | 18 + tests/testthat/test-deparse_call.R | 18 + tests/testthat/test-others.R | 3 tests/testthat/test-repair_attributes.R | 2 tests/testthat/test-s3-AsIs.R | 2 tests/testthat/test-s3-Date.R | 15 + tests/testthat/test-s3-POSIXct.R | 17 + tests/testthat/test-s3-POSIXlt.R | 17 + tests/testthat/test-s3-array.R | 2 tests/testthat/test-s3-atomic.R | 2 tests/testthat/test-s3-constructive_options.R | 2 tests/testthat/test-s3-data.frame.R | 2 tests/testthat/test-s3-data.table.R | 2 tests/testthat/test-s3-dm.R | 2 tests/testthat/test-s3-environment.R | 16 - tests/testthat/test-s3-externalptr.R | 2 tests/testthat/test-s3-factor.R | 3 tests/testthat/test-s3-formula.R | 2 tests/testthat/test-s3-function.R | 10 tests/testthat/test-s3-ggplot2-Coord.R | 5 tests/testthat/test-s3-ggplot2-Scale.R | 4 tests/testthat/test-s3-ggplot2-ggplot.R | 20 - tests/testthat/test-s3-grouped_df.R | 2 tests/testthat/test-s3-language.R | 3 tests/testthat/test-s3-list.R | 13 + tests/testthat/test-s3-matrix.R | 2 tests/testthat/test-s3-mts.R | 3 tests/testthat/test-s3-numeric_version.R | 4 tests/testthat/test-s3-ordered.R | 3 tests/testthat/test-s3-quosure.R | 4 tests/testthat/test-s3-quosures.R | 2 tests/testthat/test-s3-rowwise_df.R | 2 tests/testthat/test-s3-tbl_df.R | 2 tests/testthat/test-s3-ts.R | 2 tests/testthat/test-s3-vctrs_list_of.R | 4 tests/testthat/test-s4.R | 2 tests/testthat/test-utils.R | 13 - 117 files changed, 973 insertions(+), 840 deletions(-)
Title: Access Formula 1 Data
Description: Obtain Formula 1 data via the 'Ergast API' <https://ergast.com/mrd/> and the unofficial API <https://www.formula1.com/en/f1-live.html> via the 'fastf1' 'Python' library <https://docs.fastf1.dev/>.
Author: Santiago Casanova [aut, cre, cph],
Philip Bulsink [aut]
Maintainer: Santiago Casanova <santiago.casanova@yahoo.com>
Diff between f1dataR versions 1.4.0 dated 2023-10-02 and 1.4.1 dated 2023-11-13
DESCRIPTION | 6 +-- MD5 | 29 ++++++++-------- NEWS.md | 8 ++++ R/clear_f1_cache.R | 2 - R/load_driver_telemetry.R | 8 ++-- R/load_race_session.R | 4 +- R/load_session_laps.R | 6 +-- R/plot_fastest.R | 8 ++-- R/utils.R | 14 ++++--- README.md | 50 +++++++++++++++++++++------- inst/doc/setup_fastf1.Rmd | 2 - inst/doc/setup_fastf1.html | 2 - tests/testthat/Rplots.pdf |only tests/testthat/test-load_driver_telemetry.R | 30 ++++++++-------- tests/testthat/test-load_session_laps.R | 2 - vignettes/setup_fastf1.Rmd | 2 - 16 files changed, 106 insertions(+), 67 deletions(-)
Title: Multiple SIGnal SEGmentation
Description: Traditional methods typically detect breakpoints from individual signals, which means that when applied separately to multiple signals, the breakpoints are not aligned.
However, this package implements a common breakpoint detection approach for multiple piecewise constant signals, resulting in increased detection sensitivity and specificity.
By employing various techniques, optimal performance is ensured, and computation is accelerated. We hope that this package will be beneficial for researchers in signal processing, bioinformatics, economy, and other related fields.
The segmentation(), lambda_estimator() functions are the main functions of this package.
Author: Xuanyu Liu [aut, cre],
Junbo Duan [aut]
Maintainer: Xuanyu Liu <lxy382198251@stu.xjtu.edu.cn>
Diff between MSigSeg versions 0.1.3 dated 2023-06-07 and 0.2.0 dated 2023-11-13
MSigSeg-0.1.3/MSigSeg/R/fun_change.R |only MSigSeg-0.1.3/MSigSeg/R/fun_lambda_estimator.R |only MSigSeg-0.1.3/MSigSeg/R/fun_segmentation_PELT.R |only MSigSeg-0.1.3/MSigSeg/data/PELT_test.rda |only MSigSeg-0.1.3/MSigSeg/man/PELT_test.Rd |only MSigSeg-0.1.3/MSigSeg/man/fun_change.Rd |only MSigSeg-0.1.3/MSigSeg/man/fun_lambda_estimator.Rd |only MSigSeg-0.1.3/MSigSeg/man/fun_segmentation_PELT.Rd |only MSigSeg-0.2.0/MSigSeg/DESCRIPTION | 33 ++++++------ MSigSeg-0.2.0/MSigSeg/MD5 | 38 +++++++++----- MSigSeg-0.2.0/MSigSeg/NAMESPACE | 7 +- MSigSeg-0.2.0/MSigSeg/R/MSigSeg_Class.R | 8 +-- MSigSeg-0.2.0/MSigSeg/R/change.R |only MSigSeg-0.2.0/MSigSeg/R/data.R | 55 +++++++++++++++++++-- MSigSeg-0.2.0/MSigSeg/R/lambda_estimator.R |only MSigSeg-0.2.0/MSigSeg/R/multi_plot.R |only MSigSeg-0.2.0/MSigSeg/R/noisegen.R | 1 MSigSeg-0.2.0/MSigSeg/R/segmentation.R |only MSigSeg-0.2.0/MSigSeg/data/NCHSData.rda |only MSigSeg-0.2.0/MSigSeg/data/T16M.rda |only MSigSeg-0.2.0/MSigSeg/data/T16P.rda |only MSigSeg-0.2.0/MSigSeg/data/data_test.rda |only MSigSeg-0.2.0/MSigSeg/data/stock.rda |only MSigSeg-0.2.0/MSigSeg/man/MSigSeg-class.Rd | 10 +-- MSigSeg-0.2.0/MSigSeg/man/NCHSData.Rd |only MSigSeg-0.2.0/MSigSeg/man/T16M.Rd |only MSigSeg-0.2.0/MSigSeg/man/T16P.Rd |only MSigSeg-0.2.0/MSigSeg/man/change.Rd |only MSigSeg-0.2.0/MSigSeg/man/data_test.Rd |only MSigSeg-0.2.0/MSigSeg/man/lambda_estimator.Rd |only MSigSeg-0.2.0/MSigSeg/man/multi_plot.Rd |only MSigSeg-0.2.0/MSigSeg/man/segmentation.Rd |only MSigSeg-0.2.0/MSigSeg/man/stock.Rd |only 33 files changed, 105 insertions(+), 47 deletions(-)
Title: Cell-Typing using Variance Adjusted Mahalanobis Distances with
Multi-Labeling
Description: Creates multi-label cell-types for single-cell RNA-sequencing data based on weighted VAM scoring of cell-type specific gene sets. Schiebout, Frost (2022) <https://psb.stanford.edu/psb-online/proceedings/psb22/schiebout.pdf>.
Author: H. Robert Frost [aut],
Courtney Schiebout [aut, cre]
Maintainer: Courtney Schiebout <courtney.t.schiebout.gr@dartmouth.edu>
Diff between CAMML versions 0.2.3 dated 2022-10-10 and 1.0.0 dated 2023-11-13
DESCRIPTION | 6 ++-- MD5 | 46 ++++++++++++++++++------------------- R/CAMML.R | 2 - R/ChIMP.R | 30 ++++++++++++++++++++---- R/GetCAMMLLabels.R | 2 - build/vignette.rds |binary inst/doc/CAMML_FigureVignette.Rnw | 5 +--- inst/doc/CAMML_FigureVignette.pdf |binary inst/doc/CAMML_Quick_Vignette.Rnw | 3 -- inst/doc/CAMML_Quick_Vignette.pdf |binary inst/doc/CAMML_Vignette.Rnw | 3 -- inst/doc/CAMML_Vignette.pdf |binary inst/doc/ChIMPVignette.Rnw | 3 -- inst/doc/ChIMPVignette.pdf |binary man/BuildGeneSets.Rd | 4 +-- man/ChIMP.Rd | 6 +++- vignettes/CAMML_FigureVignette.Rnw | 5 +--- vignettes/CAMML_Quick_Vignette.Rnw | 3 -- vignettes/CAMML_Vignette.Rnw | 3 -- vignettes/ChIMPVignette.Rnw | 3 -- vignettes/ChIMPVignette1.pdf |binary vignettes/FigureVignette.pdf |binary vignettes/Quick_Vignette1.pdf |binary vignettes/Vignette1.pdf |binary 24 files changed, 69 insertions(+), 55 deletions(-)
Title: Fast and Portable Character String Processing Facilities
Description: A collection of character string/text/natural language
processing tools for pattern searching (e.g., with 'Java'-like regular
expressions or the 'Unicode' collation algorithm), random string generation,
case mapping, string transliteration, concatenation, sorting, padding,
wrapping, Unicode normalisation, date-time formatting and parsing,
and many more. They are fast, consistent, convenient, and -
thanks to 'ICU' (International Components for Unicode) -
portable across all locales and platforms. Documentation about 'stringi' is
provided via its website at <https://stringi.gagolewski.com/> and
the paper by Gagolewski (2022, <doi:10.18637/jss.v103.i02>).
Author: Marek Gagolewski [aut, cre, cph] ,
Bartek Tartanus [ctb], and others ;
Unicode, Inc. and others
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between stringi versions 1.7.12 dated 2023-01-11 and 1.8.1 dated 2023-11-13
stringi-1.7.12/stringi/src/icu55 |only stringi-1.7.12/stringi/src/icu55_common_c.txt |only stringi-1.7.12/stringi/src/icu55_common_cpp.txt |only stringi-1.7.12/stringi/src/icu55_i18n_c.txt |only stringi-1.7.12/stringi/src/icu55_i18n_cpp.txt |only stringi-1.7.12/stringi/src/icu55_stubdata_c.txt |only stringi-1.7.12/stringi/src/icu55_stubdata_cpp.txt |only stringi-1.7.12/stringi/src/icu69 |only stringi-1.7.12/stringi/src/icu69_common_c.txt |only stringi-1.7.12/stringi/src/icu69_common_cpp.txt |only stringi-1.7.12/stringi/src/icu69_i18n_c.txt |only stringi-1.7.12/stringi/src/icu69_i18n_cpp.txt |only stringi-1.7.12/stringi/src/icu69_stubdata_c.txt |only stringi-1.7.12/stringi/src/icu69_stubdata_cpp.txt |only stringi-1.8.1/stringi/DESCRIPTION | 14 stringi-1.8.1/stringi/INSTALL | 165 stringi-1.8.1/stringi/LICENSE | 682 +- stringi-1.8.1/stringi/MD5 | 3023 +++------- stringi-1.8.1/stringi/NEWS | 68 stringi-1.8.1/stringi/R/ICU_settings.R | 29 stringi-1.8.1/stringi/R/compare.R | 2 stringi-1.8.1/stringi/R/encoding.R | 2 stringi-1.8.1/stringi/R/encoding_conversion.R | 2 stringi-1.8.1/stringi/R/encoding_detection.R | 11 stringi-1.8.1/stringi/R/encoding_management.R | 2 stringi-1.8.1/stringi/R/escape.R | 29 stringi-1.8.1/stringi/R/files.R | 21 stringi-1.8.1/stringi/R/install.R | 213 stringi-1.8.1/stringi/R/internal_prepare_arg.R | 2 stringi-1.8.1/stringi/R/internal_test.R | 2 stringi-1.8.1/stringi/R/join.R | 2 stringi-1.8.1/stringi/R/length.R | 2 stringi-1.8.1/stringi/R/locale.R | 22 stringi-1.8.1/stringi/R/locale_management.R | 2 stringi-1.8.1/stringi/R/opts.R | 47 stringi-1.8.1/stringi/R/pad.R | 2 stringi-1.8.1/stringi/R/random.R | 6 stringi-1.8.1/stringi/R/reverse.R | 2 stringi-1.8.1/stringi/R/search.R | 2 stringi-1.8.1/stringi/R/search_count_4.R | 2 stringi-1.8.1/stringi/R/search_count_bound.R | 2 stringi-1.8.1/stringi/R/search_detect_4.R | 2 stringi-1.8.1/stringi/R/search_extract_4.R | 2 stringi-1.8.1/stringi/R/search_extract_bound.R | 2 stringi-1.8.1/stringi/R/search_locate_4.R | 2 stringi-1.8.1/stringi/R/search_locate_bound.R | 2 stringi-1.8.1/stringi/R/search_match_4.R | 2 stringi-1.8.1/stringi/R/search_replace_4.R | 2 stringi-1.8.1/stringi/R/search_split_4.R | 2 stringi-1.8.1/stringi/R/search_split_bound.R | 2 stringi-1.8.1/stringi/R/search_startsendswith_4.R | 2 stringi-1.8.1/stringi/R/search_subset_4.R | 2 stringi-1.8.1/stringi/R/sort.R | 23 stringi-1.8.1/stringi/R/sprintf.R | 2 stringi-1.8.1/stringi/R/stats.R | 2 stringi-1.8.1/stringi/R/stringi-package.R | 4 stringi-1.8.1/stringi/R/sub.R | 2 stringi-1.8.1/stringi/R/time_calendar.R | 43 stringi-1.8.1/stringi/R/time_format.R | 19 stringi-1.8.1/stringi/R/time_symbols.R | 2 stringi-1.8.1/stringi/R/time_zone.R | 2 stringi-1.8.1/stringi/R/trans_casemap.R | 2 stringi-1.8.1/stringi/R/trans_normalization.R | 2 stringi-1.8.1/stringi/R/trans_other.R | 2 stringi-1.8.1/stringi/R/trans_transliterate.R | 15 stringi-1.8.1/stringi/R/trim.R | 2 stringi-1.8.1/stringi/R/utils.R | 2 stringi-1.8.1/stringi/R/wrap.R | 2 stringi-1.8.1/stringi/build/partial.rdb |binary stringi-1.8.1/stringi/cleanup | 2 stringi-1.8.1/stringi/configure | 2550 +------- stringi-1.8.1/stringi/configure.ac | 1128 +-- stringi-1.8.1/stringi/configure.win | 11 stringi-1.8.1/stringi/inst/AUTHORS | 2 stringi-1.8.1/stringi/inst/CITATION | 2 stringi-1.8.1/stringi/man/about_locale.Rd | 17 stringi-1.8.1/stringi/man/stri_datetime_create.Rd | 29 stringi-1.8.1/stringi/man/stri_datetime_format.Rd | 17 stringi-1.8.1/stringi/man/stri_enc_detect2.Rd | 4 stringi-1.8.1/stringi/man/stri_escape_unicode.Rd | 11 stringi-1.8.1/stringi/man/stri_opts_brkiter.Rd | 6 stringi-1.8.1/stringi/man/stri_opts_collator.Rd | 11 stringi-1.8.1/stringi/man/stri_opts_fixed.Rd | 5 stringi-1.8.1/stringi/man/stri_opts_regex.Rd | 6 stringi-1.8.1/stringi/man/stri_order.Rd | 5 stringi-1.8.1/stringi/man/stri_rand_lipsum.Rd | 2 stringi-1.8.1/stringi/man/stri_rank.Rd | 3 stringi-1.8.1/stringi/man/stri_read_lines.Rd | 6 stringi-1.8.1/stringi/man/stri_read_raw.Rd | 2 stringi-1.8.1/stringi/man/stri_sort.Rd | 5 stringi-1.8.1/stringi/man/stri_trans_general.Rd | 13 stringi-1.8.1/stringi/man/stri_unescape_unicode.Rd | 15 stringi-1.8.1/stringi/man/stri_write_lines.Rd | 2 stringi-1.8.1/stringi/src/Makevars.in | 15 stringi-1.8.1/stringi/src/Makevars.win | 28 stringi-1.8.1/stringi/src/icu74 |only stringi-1.8.1/stringi/src/icu74_common_cpp.txt |only stringi-1.8.1/stringi/src/icu74_i18n_cpp.txt |only stringi-1.8.1/stringi/src/icu74_stubdata_cpp.txt |only stringi-1.8.1/stringi/src/install.libs.R.in | 16 stringi-1.8.1/stringi/src/stri_ICU_settings.cpp | 4 stringi-1.8.1/stringi/src/stri_brkiter.cpp | 9 stringi-1.8.1/stringi/src/stri_brkiter.h | 26 stringi-1.8.1/stringi/src/stri_bytesearch_matcher.h | 2 stringi-1.8.1/stringi/src/stri_collator.cpp | 23 stringi-1.8.1/stringi/src/stri_common.cpp | 2 stringi-1.8.1/stringi/src/stri_compare.cpp | 2 stringi-1.8.1/stringi/src/stri_container_base.cpp | 2 stringi-1.8.1/stringi/src/stri_container_base.h | 2 stringi-1.8.1/stringi/src/stri_container_bytesearch.cpp | 2 stringi-1.8.1/stringi/src/stri_container_bytesearch.h | 2 stringi-1.8.1/stringi/src/stri_container_charclass.h | 2 stringi-1.8.1/stringi/src/stri_container_double.h | 2 stringi-1.8.1/stringi/src/stri_container_integer.h | 2 stringi-1.8.1/stringi/src/stri_container_listint.cpp | 2 stringi-1.8.1/stringi/src/stri_container_listint.h | 2 stringi-1.8.1/stringi/src/stri_container_listraw.cpp | 2 stringi-1.8.1/stringi/src/stri_container_listraw.h | 2 stringi-1.8.1/stringi/src/stri_container_listutf8.cpp | 2 stringi-1.8.1/stringi/src/stri_container_listutf8.h | 2 stringi-1.8.1/stringi/src/stri_container_logical.h | 2 stringi-1.8.1/stringi/src/stri_container_regex.cpp | 2 stringi-1.8.1/stringi/src/stri_container_regex.h | 2 stringi-1.8.1/stringi/src/stri_container_usearch.cpp | 2 stringi-1.8.1/stringi/src/stri_container_usearch.h | 2 stringi-1.8.1/stringi/src/stri_container_utf16.cpp | 68 stringi-1.8.1/stringi/src/stri_container_utf16.h | 2 stringi-1.8.1/stringi/src/stri_container_utf8.cpp | 2 stringi-1.8.1/stringi/src/stri_container_utf8.h | 2 stringi-1.8.1/stringi/src/stri_container_utf8_indexable.cpp | 2 stringi-1.8.1/stringi/src/stri_container_utf8_indexable.h | 2 stringi-1.8.1/stringi/src/stri_encoding_conversion.cpp | 2 stringi-1.8.1/stringi/src/stri_encoding_detection.cpp | 10 stringi-1.8.1/stringi/src/stri_encoding_management.cpp | 2 stringi-1.8.1/stringi/src/stri_escape.cpp | 2 stringi-1.8.1/stringi/src/stri_exception.cpp | 8 stringi-1.8.1/stringi/src/stri_exception.h | 2 stringi-1.8.1/stringi/src/stri_exports.h | 2 stringi-1.8.1/stringi/src/stri_external.h | 3 stringi-1.8.1/stringi/src/stri_interval.h | 2 stringi-1.8.1/stringi/src/stri_intvec.h | 2 stringi-1.8.1/stringi/src/stri_join.cpp | 2 stringi-1.8.1/stringi/src/stri_length.cpp | 2 stringi-1.8.1/stringi/src/stri_macros.h | 2 stringi-1.8.1/stringi/src/stri_messages.h | 5 stringi-1.8.1/stringi/src/stri_pad.cpp | 2 stringi-1.8.1/stringi/src/stri_prepare_arg.cpp | 149 stringi-1.8.1/stringi/src/stri_random.cpp | 2 stringi-1.8.1/stringi/src/stri_reverse.cpp | 2 stringi-1.8.1/stringi/src/stri_search_boundaries_count.cpp | 2 stringi-1.8.1/stringi/src/stri_search_boundaries_extract.cpp | 2 stringi-1.8.1/stringi/src/stri_search_boundaries_locate.cpp | 2 stringi-1.8.1/stringi/src/stri_search_boundaries_split.cpp | 2 stringi-1.8.1/stringi/src/stri_search_class_count.cpp | 2 stringi-1.8.1/stringi/src/stri_search_class_detect.cpp | 2 stringi-1.8.1/stringi/src/stri_search_class_extract.cpp | 2 stringi-1.8.1/stringi/src/stri_search_class_locate.cpp | 2 stringi-1.8.1/stringi/src/stri_search_class_replace.cpp | 2 stringi-1.8.1/stringi/src/stri_search_class_split.cpp | 2 stringi-1.8.1/stringi/src/stri_search_class_startsendswith.cpp | 2 stringi-1.8.1/stringi/src/stri_search_class_subset.cpp | 2 stringi-1.8.1/stringi/src/stri_search_class_trim.cpp | 2 stringi-1.8.1/stringi/src/stri_search_coll_count.cpp | 2 stringi-1.8.1/stringi/src/stri_search_coll_detect.cpp | 2 stringi-1.8.1/stringi/src/stri_search_coll_extract.cpp | 2 stringi-1.8.1/stringi/src/stri_search_coll_locate.cpp | 2 stringi-1.8.1/stringi/src/stri_search_coll_replace.cpp | 2 stringi-1.8.1/stringi/src/stri_search_coll_split.cpp | 2 stringi-1.8.1/stringi/src/stri_search_coll_startsendswith.cpp | 2 stringi-1.8.1/stringi/src/stri_search_coll_subset.cpp | 2 stringi-1.8.1/stringi/src/stri_search_common.cpp | 2 stringi-1.8.1/stringi/src/stri_search_fixed_count.cpp | 2 stringi-1.8.1/stringi/src/stri_search_fixed_detect.cpp | 2 stringi-1.8.1/stringi/src/stri_search_fixed_extract.cpp | 2 stringi-1.8.1/stringi/src/stri_search_fixed_locate.cpp | 2 stringi-1.8.1/stringi/src/stri_search_fixed_replace.cpp | 2 stringi-1.8.1/stringi/src/stri_search_fixed_split.cpp | 2 stringi-1.8.1/stringi/src/stri_search_fixed_startsendswith.cpp | 2 stringi-1.8.1/stringi/src/stri_search_fixed_subset.cpp | 2 stringi-1.8.1/stringi/src/stri_search_in.cpp | 2 stringi-1.8.1/stringi/src/stri_search_other_split.cpp | 2 stringi-1.8.1/stringi/src/stri_search_regex_count.cpp | 2 stringi-1.8.1/stringi/src/stri_search_regex_detect.cpp | 2 stringi-1.8.1/stringi/src/stri_search_regex_extract.cpp | 2 stringi-1.8.1/stringi/src/stri_search_regex_locate.cpp | 2 stringi-1.8.1/stringi/src/stri_search_regex_match.cpp | 2 stringi-1.8.1/stringi/src/stri_search_regex_replace.cpp | 2 stringi-1.8.1/stringi/src/stri_search_regex_split.cpp | 2 stringi-1.8.1/stringi/src/stri_search_regex_subset.cpp | 2 stringi-1.8.1/stringi/src/stri_sort.cpp | 2 stringi-1.8.1/stringi/src/stri_sprintf.cpp | 2 stringi-1.8.1/stringi/src/stri_stats.cpp | 2 stringi-1.8.1/stringi/src/stri_string8.cpp | 2 stringi-1.8.1/stringi/src/stri_string8.h | 2 stringi-1.8.1/stringi/src/stri_string8buf.h | 2 stringi-1.8.1/stringi/src/stri_stringi.cpp | 19 stringi-1.8.1/stringi/src/stri_stringi.h | 6 stringi-1.8.1/stringi/src/stri_sub.cpp | 2 stringi-1.8.1/stringi/src/stri_test.cpp | 2 stringi-1.8.1/stringi/src/stri_time_calendar.cpp | 73 stringi-1.8.1/stringi/src/stri_time_format.cpp | 37 stringi-1.8.1/stringi/src/stri_time_symbols.cpp | 17 stringi-1.8.1/stringi/src/stri_time_zone.cpp | 15 stringi-1.8.1/stringi/src/stri_trans_casemap.cpp | 16 stringi-1.8.1/stringi/src/stri_trans_normalization.cpp | 2 stringi-1.8.1/stringi/src/stri_trans_other.cpp | 2 stringi-1.8.1/stringi/src/stri_trans_transliterate.cpp | 2 stringi-1.8.1/stringi/src/stri_ucnv.cpp | 2 stringi-1.8.1/stringi/src/stri_ucnv.h | 2 stringi-1.8.1/stringi/src/stri_uloc.cpp | 8 stringi-1.8.1/stringi/src/stri_utils.cpp | 2 stringi-1.8.1/stringi/src/stri_wrap.cpp | 12 stringi-1.8.1/stringi/src/uconfig_local.h.in | 14 213 files changed, 3411 insertions(+), 5716 deletions(-)
Title: R Commander Plug-in for Risk Demonstration
Description: R Commander plug-in to demonstrate various actuarial and financial risks. It includes valuation of bonds and stocks, portfolio optimization, classical ruin theory, demography and epidemic.
Author: Arto Luoma
Maintainer: Arto Luoma <arto.luoma@wippies.com>
Diff between RcmdrPlugin.RiskDemo versions 3.0 dated 2021-04-06 and 3.1 dated 2023-11-13
ChangeLog | 8 ++++++- DESCRIPTION | 8 +++---- MD5 | 52 ++++++++++++++++++++++++------------------------ R/bondDialog.R | 6 ++--- R/bondFigure.R | 2 - R/casesDialog.R | 2 - R/casesDialogFin.R | 2 - R/computeLifetable.R | 2 - R/drawRuin.R | 2 - R/estimateDemogmodel.R | 2 - R/forecastDialogFin.R | 2 - R/incidenceDialog.R | 4 +-- R/incidenceDialogFin.R | 2 - R/plotDemogdata.R | 2 - R/testsDialog.R | 2 - R/updateCovidData.R | 4 +-- R/viewDemogdata.R | 2 - data/countries.mort.rda |binary data/fin.fcast.rda |binary data/fin.lca.rda |binary data/fin.rda |binary data/params.rda |binary man/countries.mort.Rd | 2 - man/fin.Rd | 2 - man/fin.fcast.Rd | 2 - man/fin.lca.Rd | 2 - man/params.Rd | 4 +-- 27 files changed, 61 insertions(+), 55 deletions(-)
More information about RcmdrPlugin.RiskDemo at CRAN
Permanent link
Title: Multivariate Synthetic Control Method Using Time Series
Description: Three generalizations of the synthetic control method (which has
already an implementation in package 'Synth') are implemented: first,
'MSCMT' allows for using multiple outcome variables, second, time series
can be supplied as economic predictors, and third, a well-defined
cross-validation approach can be used.
Much effort has been taken to make the implementation as stable as possible
(including edge cases) without losing computational efficiency.
A detailed description of the main algorithms is given in
Becker and Klößner (2018) <doi:10.1016/j.ecosta.2017.08.002>.
Author: Martin Becker [aut, cre] ,
Stefan Kloessner [aut],
Karline Soetaert [com],
Jack Dongarra [cph],
R.J. Hanson [cph],
K.H. Haskell [cph],
Cleve Moler [cph],
LAPACK authors [cph]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>
Diff between MSCMT versions 1.3.7 dated 2023-04-17 and 1.3.8 dated 2023-11-13
MSCMT-1.3.7/MSCMT/man/macros |only MSCMT-1.3.8/MSCMT/DESCRIPTION | 11 ++++--- MSCMT-1.3.8/MSCMT/MD5 | 23 +++++++--------- MSCMT-1.3.8/MSCMT/NEWS | 12 ++++++++ MSCMT-1.3.8/MSCMT/R/MSCMT-package.r | 1 MSCMT-1.3.8/MSCMT/R/atomOpt.r | 16 ----------- MSCMT-1.3.8/MSCMT/R/mscmt.r | 1 MSCMT-1.3.8/MSCMT/R/multiOpt.r | 2 - MSCMT-1.3.8/MSCMT/build/partial.rdb |binary MSCMT-1.3.8/MSCMT/build/vignette.rds |binary MSCMT-1.3.8/MSCMT/inst/doc/WorkingWithMSCMT.html | 32 +++++++++++------------ MSCMT-1.3.8/MSCMT/man/MSCMTfunction.Rd | 1 MSCMT-1.3.8/MSCMT/man/MSCMTpackage.Rd | 1 13 files changed, 49 insertions(+), 51 deletions(-)
Title: Execute 'SQL' Scripts in 'R' Containing Multiple Queries
Description: The nature of working with structured query language ('SQL') scripts
efficiently often requires the creation of temporary tables and there
are few clean and simple 'R' 'SQL' execution approaches that allow
you to complete this kind of work with the 'R' environment. This
package seeks to give 'SQL' implementations in 'R' a little love
by deploying functions that allow you to deploy complex 'SQL'
scripts within a typical 'R' workflow.
Author: Kerns Sam [aut, cre]
Maintainer: Kerns Sam <samwkerns@gmail.com>
Diff between SQLove versions 0.0.3 dated 2023-11-10 and 0.0.4 dated 2023-11-13
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/dbGetMultiQuery.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Easy Dockerfile Creation from R
Description: Build a Dockerfile straight from your R session.
'dockerfiler' allows you to create step by step a Dockerfile, and
provide convenient tools to wrap R code inside this Dockerfile.
Author: Colin Fay [cre, aut] ,
Vincent Guyader [aut] ,
Josiah Parry [aut] ,
Sebastien Rochette [aut]
Maintainer: Colin Fay <contact@colinfay.me>
Diff between dockerfiler versions 0.2.1 dated 2023-01-18 and 0.2.2 dated 2023-11-13
dockerfiler-0.2.1/dockerfiler/man/gen_base_image.Rd |only dockerfiler-0.2.2/dockerfiler/DESCRIPTION | 13 dockerfiler-0.2.2/dockerfiler/MD5 | 49 +-- dockerfiler-0.2.2/dockerfiler/NAMESPACE | 4 dockerfiler-0.2.2/dockerfiler/NEWS.md | 23 + dockerfiler-0.2.2/dockerfiler/R/compact_sysreqs.R |only dockerfiler-0.2.2/dockerfiler/R/dock_from_desc.R | 19 - dockerfiler-0.2.2/dockerfiler/R/dock_from_renv.R | 157 +++++----- dockerfiler-0.2.2/dockerfiler/R/dockerignore.R | 8 dockerfiler-0.2.2/dockerfiler/R/gen_base_image.R |only dockerfiler-0.2.2/dockerfiler/R/parse-dockerfile.R |only dockerfiler-0.2.2/dockerfiler/R/renv.R |only dockerfiler-0.2.2/dockerfiler/build/vignette.rds |binary dockerfiler-0.2.2/dockerfiler/inst/doc/dockerfile-from-renv-lock.R | 33 -- dockerfiler-0.2.2/dockerfiler/inst/doc/dockerfile-from-renv-lock.Rmd | 51 +-- dockerfiler-0.2.2/dockerfiler/inst/doc/dockerfile-from-renv-lock.html | 38 -- dockerfiler-0.2.2/dockerfiler/inst/doc/dockerfiler.html | 136 ++++---- dockerfiler-0.2.2/dockerfiler/inst/renv.lock |only dockerfiler-0.2.2/dockerfiler/inst/renv_with_1.0.0.lock |only dockerfiler-0.2.2/dockerfiler/inst/vendor |only dockerfiler-0.2.2/dockerfiler/man/compact_sysreqs.Rd |only dockerfiler-0.2.2/dockerfiler/man/dock_from_renv.Rd | 44 +- dockerfiler-0.2.2/dockerfiler/man/docker_ignore_add.Rd | 4 dockerfiler-0.2.2/dockerfiler/man/dockerfiles.Rd | 10 dockerfiler-0.2.2/dockerfiler/man/get_sysreqs.Rd | 4 dockerfiler-0.2.2/dockerfiler/man/parse_dockerfile.Rd |only dockerfiler-0.2.2/dockerfiler/man/renv.Rd |only dockerfiler-0.2.2/dockerfiler/tests/testthat/test-compact_sysreqs.R |only dockerfiler-0.2.2/dockerfiler/tests/testthat/test-dock_from_renv.R | 75 ++++ dockerfiler-0.2.2/dockerfiler/tests/testthat/test-dockerfile-parsing.R |only dockerfiler-0.2.2/dockerfiler/tests/testthat/test-get_sysreqs.R | 1 dockerfiler-0.2.2/dockerfiler/vignettes/dockerfile-from-renv-lock.Rmd | 51 +-- 32 files changed, 398 insertions(+), 322 deletions(-)
Title: Identification of Counterfactual Queries in Causal Models
Description: Facilitates the identification of counterfactual queries in
structural causal models via the ID* and IDC* algorithms
by Shpitser, I. and Pearl, J. (2007, 2008) <arXiv:1206.5294>,
<https://jmlr.org/papers/v9/shpitser08a.html>.
Provides a simple interface for defining causal diagrams and counterfactual
conjunctions. Construction of parallel worlds graphs and counterfactual graphs
is carried out automatically based on the counterfactual query and the causal
diagram. See Tikka, S. (2023) <doi:10.32614/RJ-2023-053> for a tutorial of
the package.
Author: Santtu Tikka [aut, cre]
Maintainer: Santtu Tikka <santtuth@gmail.com>
Diff between cfid versions 0.1.4 dated 2022-10-26 and 0.1.6 dated 2023-11-13
DESCRIPTION | 15 + MD5 | 40 ++--- NEWS.md | 21 ++ R/algorithms.R | 14 - R/causal_effect.R | 74 ++++----- R/cf_conjunction.R | 10 - R/cf_variable.R | 14 + R/cfid-package.R | 9 + R/extractors.R | 33 ++++ R/functional.R | 46 +++++ R/graphs.R | 63 +++++-- R/identifiable.R | 10 + man/causal_effect.Rd | 84 +++++----- man/cfid-package.Rd | 6 man/counterfactuals.Rd | 304 +++++++++++++++++++------------------- man/dag.Rd | 2 man/functional.Rd | 129 ++++++++-------- man/query.Rd | 42 ++--- tests/testthat/test-algorithms.R | 18 +- tests/testthat/test-interface.R | 31 +++ tests/testthat/test-probability.R | 30 +++ 21 files changed, 599 insertions(+), 396 deletions(-)
Title: Analyzes Real-World Treatment Patterns of a Study Population of
Interest
Description: Computes treatment patterns within a given cohort using the Observational
Medical Outcomes Partnership (OMOP) common data model (CDM). As described
in Markus, Verhamme, Kors, and Rijnbeek (2022) <doi:10.1016/j.cmpb.2022.107081>.
Author: Aniek Markus [aut] ,
Maarten van Kessel [cre]
Maintainer: Maarten van Kessel <m.l.vankessel@erasmusmc.nl>
Diff between TreatmentPatterns versions 2.5.2 dated 2023-09-15 and 2.6.0 dated 2023-11-13
TreatmentPatterns-2.5.2/TreatmentPatterns/inst/R-scripts |only TreatmentPatterns-2.5.2/TreatmentPatterns/man/doEraDuration.Rd |only TreatmentPatterns-2.5.2/TreatmentPatterns/tests/testthat/teardown.R |only TreatmentPatterns-2.6.0/TreatmentPatterns/DESCRIPTION | 16 TreatmentPatterns-2.6.0/TreatmentPatterns/MD5 | 68 - TreatmentPatterns-2.6.0/TreatmentPatterns/NAMESPACE | 11 TreatmentPatterns-2.6.0/TreatmentPatterns/NEWS.md | 17 TreatmentPatterns-2.6.0/TreatmentPatterns/R/ConstructPathways.R | 367 ++++---- TreatmentPatterns-2.6.0/TreatmentPatterns/R/R6-CDMInterface.R | 254 +---- TreatmentPatterns-2.6.0/TreatmentPatterns/R/R6-PathwayConstructor.R | 23 TreatmentPatterns-2.6.0/TreatmentPatterns/R/TreatmentPatterns-package.R | 11 TreatmentPatterns-2.6.0/TreatmentPatterns/R/computePathways.R | 14 TreatmentPatterns-2.6.0/TreatmentPatterns/R/createSankeyDiagram.R | 184 +++- TreatmentPatterns-2.6.0/TreatmentPatterns/R/createSunburstPlot.R | 86 + TreatmentPatterns-2.6.0/TreatmentPatterns/R/executeTreatmentPatterns.R | 3 TreatmentPatterns-2.6.0/TreatmentPatterns/R/export.R | 9 TreatmentPatterns-2.6.0/TreatmentPatterns/README.md | 101 +- TreatmentPatterns-2.6.0/TreatmentPatterns/inst/doc/RunningTreatmentPatterns.R | 74 + TreatmentPatterns-2.6.0/TreatmentPatterns/inst/doc/RunningTreatmentPatterns.Rmd | 77 + TreatmentPatterns-2.6.0/TreatmentPatterns/inst/doc/RunningTreatmentPatterns.html | 26 TreatmentPatterns-2.6.0/TreatmentPatterns/inst/sql |only TreatmentPatterns-2.6.0/TreatmentPatterns/man/CDMInterface.Rd | 77 - TreatmentPatterns-2.6.0/TreatmentPatterns/man/PathwayConstructor.Rd | 16 TreatmentPatterns-2.6.0/TreatmentPatterns/man/computePathways.Rd | 3 TreatmentPatterns-2.6.0/TreatmentPatterns/man/createSankeyDiagram2.Rd |only TreatmentPatterns-2.6.0/TreatmentPatterns/man/createSunburstPlot.Rd | 13 TreatmentPatterns-2.6.0/TreatmentPatterns/man/createSunburstPlot2.Rd |only TreatmentPatterns-2.6.0/TreatmentPatterns/man/executeTreatmentPatterns.Rd | 3 TreatmentPatterns-2.6.0/TreatmentPatterns/tests/testthat/helper-ableToRun.R |only TreatmentPatterns-2.6.0/TreatmentPatterns/tests/testthat/helper-generateCohortTableCDMC.R |only TreatmentPatterns-2.6.0/TreatmentPatterns/tests/testthat/helper-generateCohortTableCG.R |only TreatmentPatterns-2.6.0/TreatmentPatterns/tests/testthat/setup.R | 90 -- TreatmentPatterns-2.6.0/TreatmentPatterns/tests/testthat/test-CDMInterfaceCDMC.R | 209 ++-- TreatmentPatterns-2.6.0/TreatmentPatterns/tests/testthat/test-CDMInterfaceDBC.R | 221 +++-- TreatmentPatterns-2.6.0/TreatmentPatterns/tests/testthat/test-computePathways.R | 442 ++++++---- TreatmentPatterns-2.6.0/TreatmentPatterns/tests/testthat/test-createSankeyDiagram.R | 32 TreatmentPatterns-2.6.0/TreatmentPatterns/tests/testthat/test-executeTreatmentPatterns.R | 125 +- TreatmentPatterns-2.6.0/TreatmentPatterns/tests/testthat/test-export.R | 374 +++++++- TreatmentPatterns-2.6.0/TreatmentPatterns/vignettes/RunningTreatmentPatterns.Rmd | 77 + 39 files changed, 1895 insertions(+), 1128 deletions(-)
More information about TreatmentPatterns at CRAN
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Title: Jacobi Theta Functions and Related Functions
Description: Evaluation of the Jacobi theta functions and related
functions: Weierstrass elliptic function, Weierstrass sigma function,
Weierstrass zeta function, Klein j-function, Dedekind eta function,
lambda modular function, Jacobi elliptic functions, Neville theta
functions, Eisenstein series, lemniscate elliptic functions, elliptic
alpha function, Rogers-Ramanujan continued fractions, and Dixon
elliptic functions. Complex values of the variable are supported.
Author: Stephane Laurent [aut, cre],
Mikael Fremling [aut]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between jacobi versions 3.0.0 dated 2023-10-15 and 3.1.0 dated 2023-11-13
DESCRIPTION | 14 +++--- MD5 | 64 +++++++++++++++++---------- NAMESPACE | 9 +++ NEWS.md | 19 ++++++++ R/RcppExports.R | 4 + R/RogersRamanujan.R |only R/am.R | 2 R/conformalMaps.R |only R/eisenstein.R | 12 +---- R/ellipticAlpha.R |only R/eta-dedekind.R | 20 ++++++-- R/internal.R | 14 +++--- R/jtheta.R | 78 ++++++++++++++++++++++++++++++++++ R/jtheta1derivatives.R | 17 ++++++- R/nome.R |only README.md | 19 +++++++- man/EisensteinE.Rd | 3 - man/RR.Rd |only man/RRa.Rd |only man/disk2H.Rd |only man/disk2square.Rd |only man/ellipticAlpha.Rd |only man/eta.Rd | 5 +- man/jtheta1.Rd | 2 man/jtheta2.Rd | 2 man/jtheta3.Rd | 2 man/jtheta4.Rd | 2 man/jtheta_ab.Rd |only man/nome.Rd |only man/square2H.Rd |only man/square2disk.Rd |only src/RcppExports.cpp | 13 +++++ src/jacobi.cpp | 42 ++++++++++++++++-- tests/testthat/test-RogersRamanujan.R |only tests/testthat/test-eisenstein.R | 15 ++++++ tests/testthat/test-ellipticAlpha.R |only tests/testthat/test-eta.R | 24 ++++++++++ tests/testthat/test-jtheta.R | 74 ++++++++++++++++++++++++++++++++ tests/testthat/test-kleinj.R | 8 +++ tests/testthat/test-nome.R |only tests/testthat/test-theta-neville.R | 14 ++++++ 41 files changed, 412 insertions(+), 66 deletions(-)
Title: Available Light Within the Water Column and Seafloor of Arctic
Fjords
Description: Satellite data collected between 2003 and 2022,
in conjunction with gridded bathymetric data (50-150 m resolution),
are used to estimate the irradiance reaching the bottom of a series of representative EU Arctic fjords.
An Earth System Science Data (ESSD) manuscript, Schlegel et al. (2023, in review),
that provides a detailed explanation of the methodology is currently in review.
Author: Bernard Gentili [aut],
Jean-Pierre Gattuso [aut] ,
Robert W. Schlegel [aut, cre]
Maintainer: Robert W. Schlegel <robert.schlegel@imev-mer.fr>
Diff between FjordLight versions 0.6 dated 2023-11-12 and 0.6.1 dated 2023-11-13
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 7 ++++++- R/fl_DownloadFjord.R | 3 +++ inst/doc/fl_example.html | 4 ++-- tests/testthat/Rplots.pdf |binary tests/testthat/test-fl_ListFjords.R | 2 +- 7 files changed, 22 insertions(+), 14 deletions(-)
Title: Black-Box Optimization Toolkit
Description: Features highly configurable search spaces via the 'paradox'
package and optimizes every user-defined objective function. The package
includes several optimization algorithms e.g. Random Search, Iterated
Racing, Bayesian Optimization (in 'mlr3mbo') and Hyperband (in
'mlr3hyperband'). bbotk is the base package of 'mlr3tuning', 'mlr3fselect'
and 'miesmuschel'.
Author: Marc Becker [cre, aut] ,
Jakob Richter [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Martin Binder [aut],
Olaf Mersmann [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between bbotk versions 0.7.2 dated 2022-12-08 and 0.7.3 dated 2023-11-13
DESCRIPTION | 8 MD5 | 40 +- NEWS.md | 4 R/Archive.R | 3 R/Objective.R | 4 R/OptimInstance.R | 11 R/Optimizer.R | 3 R/Terminator.R | 3 R/TerminatorEvals.R | 2 README.md | 32 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/bbotk.R | 2 inst/doc/bbotk.html | 720 +++++++++++++++++++++++-------------------- man/Archive.Rd | 9 man/Objective.Rd | 10 man/OptimInstance.Rd | 9 man/Optimizer.Rd | 9 man/Terminator.Rd | 4 man/bbotk-package.Rd | 2 man/mlr_terminators_evals.Rd | 2 21 files changed, 487 insertions(+), 390 deletions(-)
Title: Read and Write Sparse Matrices in 'SVMLight' and 'LibSVM'
Formats
Description: Read and write labelled sparse matrices in text format as used by
software such as 'SVMLight', 'LibSVM', 'ThunderSVM', 'LibFM', 'xLearn', 'XGBoost', 'LightGBM',
and others. Supports labelled data for regression, classification (binary, multi-class, multi-label),
and ranking (with 'qid' field), and can handle header metadata and comments in files.
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between readsparse versions 0.1.5-3 dated 2022-08-15 and 0.1.5-5 dated 2023-11-13
DESCRIPTION | 8 - LICENSE | 2 MD5 | 20 +-- src/Makevars.in | 1 src/Makevars.win | 1 src/RcppExports.cpp | 2 src/Rwrapper.cpp | 252 +++++++++++++++++++++++---------------- src/readsparse_internal.h | 1 src/utils.h | 9 - src/writer.h | 12 - tests/testthat/test-read-write.R | 49 +++++++ 11 files changed, 223 insertions(+), 134 deletions(-)
Title: Graph Probability Distributions with User Supplied Parameters
and Statistics
Description: Graphs the pdf or pmf and highlights what area or probability is
present in user defined locations. Visualize is able to provide lower tail,
bounded, upper tail, and two tail calculations. Supports strict and equal
to inequalities. Also provided on the graph is the mean and variance of
the distribution.
Author: James Balamuta [aut, cph, cre]
Maintainer: James Balamuta <james.balamuta@gmail.com>
Diff between visualize versions 4.4.0 dated 2020-01-08 and 4.5.0 dated 2023-11-13
DESCRIPTION | 17 ++-- MD5 | 99 ++++++++++++------------- NEWS.md | 9 ++ R/sysdata.rda |binary R/visualize-distributions.R | 2 R/visualize-package.R | 1 R/visualize.beta.R | 2 R/visualize.cauchy.R | 2 R/visualize.chisq.R | 2 R/visualize.continuous.R | 55 ++++++------- R/visualize.discrete.R | 27 +++--- R/visualize.exp.R | 2 R/visualize.f.R | 2 R/visualize.gamma.R | 2 R/visualize.lnorm.R | 2 R/visualize.logis.R | 2 R/visualize.norm.R | 2 R/visualize.t.R | 2 R/visualize.unif.R | 2 R/visualize.wilcox.R | 2 README.md | 25 ++++-- man/figures/README-discrete-inequalities-1.png |binary man/figures/README-discrete-inequalities-2.png |binary man/figures/README-discrete-inequalities-3.png |binary man/figures/README-visualize-binomial-1.png |binary man/figures/README-visualize-binomial-2.png |binary man/figures/README-visualize-normal-1.png |binary man/figures/README-visualize-normal-2.png |binary man/figures/README-visualize-normal-3.png |binary man/figures/README-visualize-normal-4.png |only man/visualize-package.Rd | 16 +--- man/visualize.beta.Rd | 4 - man/visualize.binom.Rd | 13 ++- man/visualize.cauchy.Rd | 7 - man/visualize.chisq.Rd | 4 - man/visualize.continuous.Rd | 34 +++----- man/visualize.discrete.Rd | 7 - man/visualize.exp.Rd | 4 - man/visualize.f.Rd | 4 - man/visualize.gamma.Rd | 4 - man/visualize.geom.Rd | 7 - man/visualize.hyper.Rd | 14 ++- man/visualize.it.Rd | 13 ++- man/visualize.lnorm.Rd | 7 - man/visualize.logis.Rd | 7 - man/visualize.nbinom.Rd | 13 ++- man/visualize.norm.Rd | 4 - man/visualize.pois.Rd | 7 - man/visualize.t.Rd | 4 - man/visualize.unif.Rd | 4 - man/visualize.wilcox.Rd | 4 - 51 files changed, 231 insertions(+), 209 deletions(-)
Title: File Cacher
Description: The main functions in this package are with_cache() and cached_read().
The former is a simple way to cache an R object into a file on disk,
using 'cachem'. The latter is a wrapper around any standard read function,
but caches both the output and the file list info. If the input file list
info hasn't changed, the cache is used; otherwise, the original files are
re-read. This can save time if the original operation requires reading from
many files, and/or involves lots of processing.
Author: Or Gadish [aut, cre, cph]
Maintainer: Or Gadish <orgadish@gmail.com>
Diff between filecacher versions 0.2.4 dated 2023-11-10 and 0.2.5 dated 2023-11-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 9 +++++++-- tests/testthat/test-cached_read.R | 22 +++++++++------------- 4 files changed, 22 insertions(+), 21 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Structural multivariate-univariate linear mixed model solver for estimation of multiple random effects with unknown variance-covariance structures (e.g., heterogeneous and unstructured) and known covariance among levels of random effects (e.g., pedigree and genomic relationship matrices) (Covarrubias-Pazaran, 2016 <doi:10.1371/journal.pone.0156744>; Maier et al., 2015 <doi:10.1016/j.ajhg.2014.12.006>; Jensen et al., 1997). REML estimates can be obtained using the Direct-Inversion Newton-Raphson and Direct-Inversion Average Information algorithms for the problems r x r (r being the number of records) or using the Henderson-based average information algorithm for the problem c x c (c being the number of coefficients to estimate). Spatial models can also be fitted using the two-dimensional spline functionality available.
Author: Giovanny Covarrubias-Pazaran
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between sommer versions 4.3.2 dated 2023-08-10 and 4.3.3 dated 2023-11-13
CHANGELOG | 1 DESCRIPTION | 8 - MD5 | 66 +++++++-------- R/FUN_markers.R | 29 +++--- R/FUN_special.R | 61 ++++++-------- R/FUN_utils.R | 2 R/mmec.R | 2 R/mmer.R | 2 inst/doc/v1.sommer.quick.start.Rmd | 2 inst/doc/v2.sommer.changes.and.faqs.Rmd | 2 inst/doc/v3.sommer.qg.R | 2 inst/doc/v4.sommer.gxe.Rmd | 2 inst/doc/v5.sommer.vs.lme4.R | 15 ++- inst/doc/v5.sommer.vs.lme4.Rmd | 18 ++-- inst/doc/v6.sommer.spatial.R | 4 man/EMMA.Rd | 2 man/GWAS.Rd | 7 - man/covc.Rd | 4 man/mmec.Rd | 6 - man/mmer.Rd | 7 - man/sommer-package.Rd | 2 man/spl2Db.Rd | 6 - man/spl2Dmats.Rd | 6 - man/tpsmmbwrapper.Rd | 6 - vignettes/v1.sommer.quick.start.Rmd | 2 vignettes/v1.sommer.quick.start.html | 22 ++--- vignettes/v2.sommer.changes.and.faqs.Rmd | 2 vignettes/v2.sommer.changes.and.faqs.html | 18 ++-- vignettes/v3.sommer.qg.html | 4 vignettes/v4.sommer.gxe.Rmd | 2 vignettes/v4.sommer.gxe.html | 22 ++--- vignettes/v5.sommer.vs.lme4.Rmd | 18 ++-- vignettes/v5.sommer.vs.lme4.html | 130 +++++++++++++++--------------- vignettes/v6.sommer.spatial.html | 4 34 files changed, 248 insertions(+), 238 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-30 0.26.6.12
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-30 4.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-20 1.0.5
2023-08-17 1.0.4
2023-04-14 1.0.3
2022-12-21 1.0.2
2022-10-05 1.0.1
2022-07-02 1.0.0
2022-05-03 0.5.2
2022-03-29 0.5.1
2022-03-20 0.5.0
2021-07-11 0.4.1
2020-11-12 0.4.0
2020-07-08 0.3.0
2020-05-22 0.2.3
Title: Interactive Collapsible Tree Diagrams using 'D3.js'
Description: Interactive Reingold-Tilford tree diagrams created using 'D3.js', where every node can be expanded and collapsed by clicking on it.
Tooltips and color gradients can be mapped to nodes using a numeric column in the source data frame.
See 'collapsibleTree' website for more information and examples.
Author: Adeel Khan [aut, cre],
Dhrumin Shah [ctb],
Mike Bostock [ctb, cph]
Maintainer: Adeel Khan <AdeelK@gwu.edu>
Diff between collapsibleTree versions 0.1.7 dated 2018-08-22 and 0.1.8 dated 2023-11-13
DESCRIPTION | 9 +-- MD5 | 22 ++++---- R/collapsibleTree.R | 15 ++++- R/collapsibleTree.data.frame.R | 10 +++ R/collapsibleTree.data.tree.R | 10 ++- R/collapsibleTreeNetwork.R | 12 +++- R/collapsibleTreeSummary.R | 2 README.md | 19 +++---- inst/htmlwidgets/collapsibleTree.js | 5 + man/collapsibleTree.Rd | 95 +++++++++++++++++++++++++++--------- man/collapsibleTreeNetwork.Rd | 24 ++++++--- man/collapsibleTreeSummary.Rd | 29 ++++++++-- 12 files changed, 183 insertions(+), 69 deletions(-)
More information about collapsibleTree at CRAN
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