Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] ,
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 2.8.0 dated 2023-11-05 and 2.8.1 dated 2023-11-22
DESCRIPTION | 6 +++--- MD5 | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-09 1.4.1
2023-05-23 1.4
2023-03-19 1.3
2022-08-17 1.2.8
2022-06-13 1.2.7
2022-03-20 1.2.6
2022-01-18 1.2.5
2021-12-20 1.2.4
2021-11-03 1.2.3
2020-08-03 1.2.2
2019-10-02 1.2.1
2019-09-07 1.2
2018-10-21 1.1
2018-06-13 0.9
2018-01-05 0.8
2017-11-23 0.7
2017-07-26 0.6
2017-07-11 0.5
2016-10-23 0.4
2015-11-16 0.3
2015-05-31 0.2
2015-01-21 0.1
2014-06-22 0.0-2
2013-02-04 0.0-1
Title: Simulation of Study Data
Description: Simulates data sets in order to explore modeling
techniques or better understand data generating processes. The user
specifies a set of relationships between covariates, and generates
data based on these specifications. The final data sets can represent
data from randomized control trials, repeated measure (longitudinal)
designs, and cluster randomized trials. Missingness can be generated
using various mechanisms (MCAR, MAR, NMAR).
Author: Keith Goldfeld [aut, cre] ,
Jacob Wujciak-Jens [aut]
Maintainer: Keith Goldfeld <keith.goldfeld@nyulangone.org>
Diff between simstudy versions 0.7.0 dated 2023-06-01 and 0.7.1 dated 2023-11-22
DESCRIPTION | 14 MD5 | 143 +++---- NAMESPACE | 2 R/RcppExports.R | 12 R/add_correlated_data.R | 24 - R/generate_correlated_data.R | 2 R/generate_dist.R | 1 R/group_data.R | 10 R/internal_utility.R | 38 + R/utility.R | 161 ++++++++ build/vignette.rds |binary inst/doc/clustered.R | 13 inst/doc/clustered.Rmd | 4 inst/doc/clustered.html | 72 +-- inst/doc/corelationmat.R | 35 - inst/doc/corelationmat.Rmd | 3 inst/doc/corelationmat.html | 320 ++++++++-------- inst/doc/correlated.R | 11 inst/doc/correlated.Rmd | 4 inst/doc/correlated.html | 310 ++++++++-------- inst/doc/double_dot_extension.R | 13 inst/doc/double_dot_extension.Rmd | 8 inst/doc/double_dot_extension.html | 190 ++++----- inst/doc/logisticCoefs.R |only inst/doc/logisticCoefs.Rmd |only inst/doc/logisticCoefs.html |only inst/doc/longitudinal.R | 19 inst/doc/longitudinal.Rmd | 4 inst/doc/longitudinal.html | 129 +++--- inst/doc/missing.R | 17 inst/doc/missing.Rmd | 4 inst/doc/missing.html | 168 ++++---- inst/doc/ordinal.R | 9 inst/doc/ordinal.Rmd | 4 inst/doc/ordinal.html | 116 +++--- inst/doc/simstudy.R | 11 inst/doc/simstudy.Rmd | 4 inst/doc/simstudy.html | 170 ++++---- inst/doc/spline.R | 15 inst/doc/spline.Rmd | 4 inst/doc/spline.html | 118 +++--- inst/doc/survival.R | 39 +- inst/doc/survival.Rmd | 3 inst/doc/survival.html | 628 ++++++++++++++++----------------- inst/doc/treat_and_exposure.R | 21 - inst/doc/treat_and_exposure.Rmd | 4 inst/doc/treat_and_exposure.html | 186 ++++----- man/addCompRisk.Rd | 4 man/addCorGen.Rd | 6 man/genCorFlex.Rd | 2 man/logisticCoefs.Rd |only src/RcppExports.cpp | 43 ++ src/srcRcpp.cpp | 170 ++++++++ tests/testthat.R | 2 tests/testthat/test-add_data.R | 9 tests/testthat/test-conditions.R | 2 tests/testthat/test-define_data.R | 130 ++++-- tests/testthat/test-glue.R | 3 tests/testthat/test-group_data.R | 2 tests/testthat/test-internal_utility.R | 11 tests/testthat/test-missing_data.R | 2 tests/testthat/test-survival.R | 4 tests/testthat/test-utility.R | 111 +++++ vignettes/clustered.Rmd | 4 vignettes/corelationmat.Rmd | 3 vignettes/correlated.Rmd | 4 vignettes/double_dot_extension.Rmd | 8 vignettes/logisticCoefs.Rmd |only vignettes/longitudinal.Rmd | 4 vignettes/missing.Rmd | 4 vignettes/ordinal.Rmd | 4 vignettes/simstudy.Rmd | 4 vignettes/spline.Rmd | 4 vignettes/survival.Rmd | 3 vignettes/treat_and_exposure.Rmd | 4 75 files changed, 2151 insertions(+), 1459 deletions(-)
Title: Read and Write 'jamovi' Files ('.omv')
Description: The free and open a statistical spreadsheet 'jamovi'
(<https://www.jamovi.org>) aims to make statistical analyses easy and
intuitive. 'jamovi' produces syntax that can directly be used in R (in
connection with the R-package 'jmv'). Having import / export routines for
the data files 'jamovi' produces ('.omv') permits an easy transfer of
data and analyses between 'jamovi' and R.
Author: Sebastian Jentschke [aut, cre]
Maintainer: Sebastian Jentschke <sebastian.jentschke@uib.no>
Diff between jmvReadWrite versions 0.4.1 dated 2023-10-05 and 0.4.2 dated 2023-11-22
DESCRIPTION | 6 - MD5 | 88 +++++++------- NEWS.md | 12 ++ R/arrange_cols_omv.R | 9 - R/convert_to_omv.R | 10 - R/data.R | 209 +++++++++++++++++------------------ R/describe_omv.R | 9 - R/long2wide_omv.R | 6 - R/merge_cols_omv.R | 58 +++++++-- R/merge_rows_omv.R | 11 - R/read_omv.R | 21 +-- R/replace_omv.R | 28 ++-- R/search_omv.R | 15 +- R/sort_omv.R | 9 - R/transpose_omv.R | 9 - R/wide2long_omv.R | 19 +-- R/write_omv.R | 6 - README.md | 38 +++--- build/vignette.rds |binary inst/CITATION | 2 inst/doc/jmvReadWrite.R | 6 - inst/doc/jmvReadWrite.Rmd | 34 +++-- inst/doc/jmvReadWrite.html | 27 ++-- man/AlbumSales.Rd | 11 + man/ToothGrowth.Rd | 16 +- man/arrange_cols_omv.Rd | 9 - man/bfi_sample.Rd | 68 +++++------ man/bfi_sample2.Rd | 58 ++++----- man/bfi_sample3.Rd | 56 ++++----- man/convert_to_omv.Rd | 10 - man/describe_omv.Rd | 9 - man/long2wide_omv.Rd | 6 - man/merge_cols_omv.Rd | 7 - man/merge_rows_omv.Rd | 11 - man/read_omv.Rd | 21 +-- man/replace_omv.Rd | 14 +- man/search_omv.Rd | 18 ++- man/sort_omv.Rd | 9 - man/transpose_omv.Rd | 9 - man/wide2long_omv.Rd | 16 +- man/write_omv.Rd | 6 - tests/testthat/test-globals.R | 19 ++- tests/testthat/test-merge_cols_omv.R | 38 ++++++ tests/testthat/test-replace_omv.R | 8 + vignettes/jmvReadWrite.Rmd | 34 +++-- 45 files changed, 601 insertions(+), 484 deletions(-)
Title: Extracting and Visualizing Output from 'jagsUI'
Description: Tools are provided to streamline Bayesian analyses in 'JAGS' using
the 'jagsUI' package. Included are functions for extracting output in
simpler format, functions for streamlining assessment of convergence, and
functions for producing summary plots of output. Also included is a
function that provides a simple template for running 'JAGS' from 'R'.
Referenced materials can be found at <DOI:10.1214/ss/1177011136>.
Author: Matt Tyers [aut, cre]
Maintainer: Matt Tyers <matttyersstat@gmail.com>
Diff between jagshelper versions 0.1.11 dated 2022-11-08 and 0.2.0 dated 2023-11-22
DESCRIPTION | 10 MD5 | 95 NAMESPACE | 103 NEWS.md | 46 R/jagshelper1.R | 4075 ++++++++++++++++++++------------------ README.md | 208 + build/vignette.rds |binary data/asdf_prior_jags_out.rda |only inst/doc/jagshelper-vignette.R | 162 - inst/doc/jagshelper-vignette.Rmd | 512 ++-- inst/doc/jagshelper-vignette.html | 1438 ++++++------- man/SS_data.Rd | 32 man/SS_out.Rd | 40 man/asdf_jags_out.Rd | 32 man/asdf_prior_jags_out.Rd |only man/caterpillar.Rd | 207 - man/chaindens_df.Rd | 73 man/chaindens_jags.Rd | 75 man/chaindens_line.Rd | 75 man/check_Rhat.Rd | 76 man/check_neff.Rd | 62 man/comparecat.Rd | 84 man/comparedens.Rd | 114 - man/comparepriors.Rd |only man/cor_jags.Rd | 64 man/envelope.Rd | 179 - man/expit.Rd | 56 man/jags_df.Rd | 70 man/jags_plist.Rd | 79 man/jagshelper-package.Rd | 74 man/logit.Rd | 52 man/nbyname.Rd | 76 man/nparam.Rd | 56 man/overlayenvelope.Rd | 204 - man/pairstrace_jags.Rd | 114 - man/plotRhats.Rd | 160 - man/plotcor_jags.Rd | 122 - man/plotdens.Rd | 192 - man/pull_post.Rd | 86 man/qq_postpred.Rd |only man/rcolors.Rd | 54 man/skeleton.Rd | 60 man/trace_df.Rd | 73 man/trace_jags.Rd | 75 man/trace_line.Rd | 75 man/tracedens_jags.Rd | 87 man/traceworstRhat.Rd | 124 - man/ts_postpred.Rd |only tests/testthat.R | 24 tests/testthat/test_jagshelper.R | 530 ++-- vignettes/jagshelper-vignette.Rmd | 512 ++-- 51 files changed, 5622 insertions(+), 5095 deletions(-)
Title: Assertive Programming for R Analysis Pipelines
Description: Provides functionality to assert conditions
that have to be met so that errors in data used in
analysis pipelines can fail quickly. Similar to
'stopifnot()' but more powerful, friendly, and easier
for use in pipelines.
Author: Tony Fischetti [aut, cre]
Maintainer: Tony Fischetti <tony.fischetti@gmail.com>
Diff between assertr versions 3.0.0 dated 2022-11-05 and 3.0.1 dated 2023-11-22
DESCRIPTION | 11 ++++++----- MD5 | 31 ++++++++++++++++--------------- NEWS | 5 +++++ R/assertions.R | 6 +++--- R/assertr-package.R |only R/predicates.R | 21 +++++++++++++++------ README.md | 9 ++++++--- build/vignette.rds |binary inst/doc/assertr.html | 8 ++++---- man/assertr.Rd | 1 + man/within_bounds.Rd | 8 +++++++- tests/testthat.R | 8 ++++++++ tests/testthat/test-assertions.R | 26 +++++++++++++++++++------- tests/testthat/test-errors.R | 2 -- tests/testthat/test-predicates.R | 31 ++++++++++++++++++++++++++++--- tests/testthat/test-row-redux.R | 2 -- tests/testthat/test-utils.R | 8 +------- 17 files changed, 119 insertions(+), 58 deletions(-)
Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] ,
Posit Software, PBC [cph, fnd],
Christophe Dervieux [ctb] ,
Devon Ryan [ctb] ,
Ethan Heinzen [ctb],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.48 dated 2023-10-13 and 0.49 dated 2023-11-22
DESCRIPTION | 6 ++-- MD5 | 8 +++--- R/install.R | 68 +++++++++++++++++++++++++++++++++++++++++++--------- R/latex.R | 17 +++++++++---- man/copy_tinytex.Rd | 6 +++- 5 files changed, 82 insertions(+), 23 deletions(-)
Title: PRO-CTCAE Scoring, Analysis, and Graphical Tools
Description: A collection of tools to facilitate standardized analysis
and graphical procedures when using the National Cancer Institute’s
Patient-Reported Outcomes version of the Common Terminology Criteria for
Adverse Events (PRO-CTCAE).
Author: Blake Langlais [aut, cre],
Brie Noble [ctb],
Molly Klanderman [ctb],
Molly Voss [ctb],
Amylou Dueck [aut]
Maintainer: Blake Langlais <langlais.blake@mayo.edu>
Diff between ProAE versions 0.2.12 dated 2023-01-20 and 0.2.15 dated 2023-11-22
DESCRIPTION | 9 - MD5 | 22 +-- R/ProAE.R | 1 R/toxFigures.R | 72 +++++++++--- R/toxTables.R | 28 +++- build/vignette.rds |binary inst/CITATION | 12 -- inst/doc/ProAE.R | 2 inst/doc/ProAE.html | 307 ++++++++++++++++++++++++++++++++++++++++++---------- man/ProAE.Rd | 1 man/toxFigures.Rd | 20 +++ man/toxTables.Rd | 3 12 files changed, 371 insertions(+), 106 deletions(-)
Title: Efficient Bayesian Inference for Time-Varying Parameter Models
with Shrinkage
Description: Efficient Markov chain Monte Carlo (MCMC) algorithms for fully Bayesian estimation of time-varying parameter models with shrinkage priors. Details on the algorithms used are provided in Bitto and Frühwirth-Schnatter (2019) <doi:10.1016/j.jeconom.2018.11.006> and
Cadonna et al. (2020) <doi:10.3390/econometrics8020020>. For details on the package, please see Knaus et al. (2021) <doi:10.18637/jss.v100.i13>.
Author: Peter Knaus [aut, cre] ,
Angela Bitto-Nemling [aut],
Annalisa Cadonna [aut] ,
Sylvia Fruehwirth-Schnatter [aut]
,
Daniel Winkler [ctb],
Kemal Dingic [ctb]
Maintainer: Peter Knaus <peter.knaus@wu.ac.at>
Diff between shrinkTVP versions 2.0.6 dated 2022-10-18 and 2.1.1 dated 2023-11-22
DESCRIPTION | 6 ++-- MD5 | 26 ++++++++++---------- NEWS.md | 5 +++ inst/doc/shrinkTVP.ltx | 4 +-- inst/doc/shrinkTVP.pdf |binary inst/include/shrinkTVP.h | 12 +++++++++ src/Makevars | 2 - src/Makevars.win | 2 - src/cpp_utilities.cpp | 61 ++++++++++++++++++++++++++++------------------- src/cpp_utilities.h | 3 ++ src/exports.cpp | 2 + src/sample_TG_TVP.cpp | 2 - src/shrinkTVP.cpp | 2 - vignettes/shrinkTVP.ltx | 4 +-- 14 files changed, 83 insertions(+), 48 deletions(-)
Title: Precipitation R Recipes
Description: An open-access tool/framework to download, validate, visualize, and
analyze multi-source precipitation data. More information and an example of implementation can
be found in Vargas Godoy and Markonis (2023,
<doi:10.1016/j.envsoft.2023.105711>).
Author: Mijael Rodrigo Vargas Godoy [aut, cre]
,
Yannis Markonis [aut, ths]
Maintainer: Mijael Rodrigo Vargas Godoy <mirovago@gmail.com>
Diff between pRecipe versions 3.0.1-1 dated 2023-09-25 and 3.0.1-2 dated 2023-11-22
DESCRIPTION | 6 +- MD5 | 18 +++---- NEWS.md | 4 + R/pRecipe_masks.R | 2 R/saveNC.R | 9 ++- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 114 ++++++++++++++++++++++----------------------- inst/doc/introduction.html | 4 - man/saveNC.Rd | 8 ++- 10 files changed, 90 insertions(+), 75 deletions(-)
Title: Generalised Linear Mixed Models in R
Description: Specification, analysis, simulation, and fitting of generalised linear mixed models.
Includes Markov Chain Monte Carlo Maximum likelihood and Laplace approximation model fitting for a range of models,
non-linear fixed effect specifications, a wide range of flexible covariance functions that can be combined arbitrarily,
robust and bias-corrected standard error estimation, power calculation, data simulation, and more.
See <https://samuel-watson.github.io/glmmr-web/> for a detailed manual.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
Diff between glmmrBase versions 0.4.6 dated 2023-09-14 and 0.5.2 dated 2023-11-22
glmmrBase-0.4.6/glmmrBase/tests |only glmmrBase-0.5.2/glmmrBase/DESCRIPTION | 13 glmmrBase-0.5.2/glmmrBase/MD5 | 78 glmmrBase-0.5.2/glmmrBase/R/R6Model.R | 518 +++- glmmrBase-0.5.2/glmmrBase/R/R6covariance.R | 199 + glmmrBase-0.5.2/glmmrBase/R/R6meanfunction.R | 2 glmmrBase-0.5.2/glmmrBase/R/RcppExports.R | 420 ++- glmmrBase-0.5.2/glmmrBase/build/partial.rdb |binary glmmrBase-0.5.2/glmmrBase/inst/include/glmmr.h | 39 glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/algo.h | 45 glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/calculator.hpp | 1027 +++++---- glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/covariance.hpp | 496 ++-- glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/family.hpp | 27 glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/formula.hpp | 77 glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/formulaparse.h | 152 - glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/general.h | 186 + glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/griddata.hpp |only glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/hsgpcovariance.hpp |only glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/instructions.h |only glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/interpreter.h | 413 +-- glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/linearpredictor.hpp | 200 - glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/maths.h | 433 ++- glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/matrixfield.h | 16 glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/matrixw.hpp | 21 glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/model.hpp | 462 ++++ glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/modelbits.hpp | 45 glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/modelmatrix.hpp | 399 ++- glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/modelmcmc.hpp | 44 glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/modeloptim.hpp | 268 +- glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/nngpcovariance.hpp |only glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/randomeffects.hpp | 125 - glmmrBase-0.5.2/glmmrBase/inst/include/glmmr/sparse.h | 78 glmmrBase-0.5.2/glmmrBase/man/Covariance.Rd | 55 glmmrBase-0.5.2/glmmrBase/man/Model.Rd | 182 + glmmrBase-0.5.2/glmmrBase/src/Makevars | 2 glmmrBase-0.5.2/glmmrBase/src/Makevars.win | 2 glmmrBase-0.5.2/glmmrBase/src/RcppExports.cpp | 1099 +++++++--- glmmrBase-0.5.2/glmmrBase/src/covariance_module.cpp | 596 ++++- glmmrBase-0.5.2/glmmrBase/src/model_module.cpp | 402 +-- glmmrBase-0.5.2/glmmrBase/src/model_module_2.cpp |only glmmrBase-0.5.2/glmmrBase/src/model_module_extension.cpp | 301 ++ glmmrBase-0.5.2/glmmrBase/src/other_functions.cpp | 4 42 files changed, 5639 insertions(+), 2787 deletions(-)
Title: Calculate Concentration and Dispersion in Ordered Rating Scales
Description: Calculates concentration and dispersion in ordered rating scales. It implements various measures of concentration and dispersion to describe what researchers variably call agreement, concentration, consensus, dispersion, or polarization among respondents in ordered data. It also implements other related measures to classify distributions. In addition to a generic city-block based concentration measure and a generic dispersion measure, the package implements various measures, including van der Eijk's (2001) <DOI: 10.1023/A:1010374114305> measure of agreement A, measures of concentration by Leik, Tatsle and Wierman, Blair and Lacy, Kvalseth, Berry and Mielke, Reardon, and Garcia-Montalvo and Reynal-Querol. Furthermore, the package provides an implementation of Galtungs AJUS-system to classify distributions, as well as a function to identify the position of multiple modes.
Author: Didier Ruedin [aut, cre]
Clem Aeppli [ctb]
Maintainer: Didier Ruedin <didier.ruedin@unine.ch>
Diff between agrmt versions 1.42.8 dated 2021-11-17 and 1.42.12 dated 2023-11-22
DESCRIPTION | 13 +++++-------- LICENSE | 2 +- MD5 | 34 +++++++++++++++++----------------- NEWS | 19 +++++++++++++++++++ R/collapse.R | 3 ++- R/consensus.R | 18 +++++++++--------- build/vignette.rds |binary inst/doc/agrmt.pdf |binary man/BerryMielke.Rd | 2 +- man/BlairLacy.Rd | 2 +- man/Kvalseth.Rd | 4 ++-- man/collapse.Rd | 4 ++-- man/consensus.variance.Rd | 2 +- man/dsquared.Rd | 2 +- man/l.variance.Rd | 2 +- man/lsquared.Rd | 2 +- man/lsquared.variance.Rd | 2 +- man/var.variance.Rd | 2 +- 18 files changed, 65 insertions(+), 48 deletions(-)
Title: Multiple Integration over Convex Polyhedra
Description: Evaluation of multiple integrals over convex polyhedra. This
is useful when the bounds of the integrals are some linear
combinations of the variables.
Author: Stephane Laurent [aut, cre]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between polyhedralCubature versions 1.0.0 dated 2023-10-26 and 1.1.0 dated 2023-11-22
DESCRIPTION | 9 - MD5 | 21 +- NAMESPACE | 38 ++--- NEWS.md | 6 R/aaa.R | 18 ++ R/getAb.R |only R/integrateOverPolyhedron.R | 4 inst/doc/polyhedralCubature.R | 9 + inst/doc/polyhedralCubature.Rmd | 279 ++++++++++++++++++++------------------- inst/doc/polyhedralCubature.html | 57 +++++-- man/getAb.Rd |only man/pipe-operator.Rd |only vignettes/polyhedralCubature.Rmd | 279 ++++++++++++++++++++------------------- 13 files changed, 402 insertions(+), 318 deletions(-)
More information about polyhedralCubature at CRAN
Permanent link
Title: Expected Value of Information
Description: Methods to calculate the expected value of information from a decision-analytic model. This includes the expected value of perfect information (EVPI), partial perfect information (EVPPI) and sample information (EVSI), and the expected net benefit of sampling (ENBS). A range of alternative computational methods are provided under the same user interface. See Jackson et al. (2022) <doi:10.1146/annurev-statistics-040120-010730>.
Author: Christopher Jackson [aut, cre],
Anna Heath [aut],
Gianluca Baio [ctb] ,
Mark Strong [ctb] ,
Kofi Placid Adragni [ctb] ,
Andrew Raim [ctb]
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Diff between voi versions 1.0 dated 2023-05-26 and 1.0.1 dated 2023-11-22
DESCRIPTION | 10 MD5 | 76 +- NEWS.md |only R/bf.R | 4 R/check_regression.R | 11 R/evppi.R | 22 R/evppi_inla.R | 3 R/evppi_npreg.R | 22 R/evsi.R | 14 R/evsi_is.R | 3 R/evsi_mm.R | 89 ++ R/pfc.R | 4 R/study.R | 11 README.md | 8 build/vignette.rds |binary inst/book_misc/evppi_reg.Rmd | 2 inst/book_misc/evppi_reg.pdf |binary inst/book_misc/evppi_reg.tex | 53 + inst/book_misc/evppi_reg_files/figure-latex/dotplot-1.pdf |binary inst/book_misc/evppi_reg_files/figure-latex/regression_diagnostics-1.pdf |binary inst/book_misc/gam_graphs.Rmd | 18 inst/book_misc/he_graphs.R | 18 inst/doc/plots.html | 232 +++---- inst/doc/voi.R | 2 inst/doc/voi.Rmd | 2 inst/doc/voi.html | 302 +++++----- man/check_regression.Rd | 5 man/evppi.Rd | 8 man/evppivar.Rd | 8 man/evsi.Rd | 4 man/evsivar.Rd | 4 tests/tests_slow/test_evppi.R | 34 - tests/testthat/test_check_regression.R |only tests/testthat/test_evppi.R | 48 + tests/testthat/test_evsi_errors.R | 19 tests/testthat/test_evsi_mm.R | 34 - tests/testthat/test_heemod.R | 2 tests/testthat/test_multcomp.R | 14 tests/testthat/test_plots.R | 21 vignettes/voi.Rmd | 2 40 files changed, 673 insertions(+), 436 deletions(-)
Title: Interact with the 'Databrary.org' API
Description: 'Databrary.org' is a restricted access repository for research data, especially video and audio.
This package provides commands to interact with the data stored on 'Databrary.org'.
Author: Rick O. Gilmore [aut, cre, cph],
Jeffrey Spies [aut],
National Science Foundation OAC-2032713 [fnd],
National Institutes of Health R01HD094830 [fnd]
Maintainer: Rick O. Gilmore <rog1@psu.edu>
Diff between databraryr versions 0.5.0 dated 2023-10-24 and 0.5.1 dated 2023-11-22
DESCRIPTION | 6 MD5 | 85 - NAMESPACE | 3 NEWS.md | 18 R/GET_db_contents.R | 12 R/download_party.R | 15 R/download_party_avatar.R | 85 - R/download_session_csv.R | 12 R/download_session_zip.R |only R/download_volume_zip.R |only R/get_party_as_df.R | 61 - R/get_video_stats.R | 6 R/list_affiliates.R | 150 +- R/list_assets_by_type.R | 2 R/list_sessions.R | 76 - R/list_volume.R | 2 R/list_volume_funding.R | 51 R/logout_db.R | 3 R/summarize_videos_in_volume.R |only README.md | 2 build/vignette.rds |binary inst/doc/databrary.R | 12 inst/doc/databrary.Rmd | 2 inst/doc/databrary.html | 1337 ++++++++++++++++++----- man/download_party.Rd | 1 man/download_party_avatar.Rd | 24 man/download_session_csv.Rd | 5 man/download_session_zip.Rd |only man/download_volume_zip.Rd |only man/get_party_as_df.Rd | 7 man/get_video_stats.Rd | 6 man/list_assets_by_type.Rd | 2 man/list_sessions.Rd | 4 man/list_volume.Rd | 2 man/list_volume_funding.Rd | 6 man/logout_db.Rd | 2 man/summarize_videos_in_volume.Rd |only tests/testthat/test-download_party_avatar.R | 1 tests/testthat/test-download_session_zip.R |only tests/testthat/test-download_volume_zip.R |only tests/testthat/test-get_party_as_df.R | 4 tests/testthat/test-get_video_stats.R | 1 tests/testthat/test-list_affiliates.R | 1 tests/testthat/test-list_sessions.R | 1 tests/testthat/test-list_sessions_in_volume.R | 1 tests/testthat/test-list_volume_funding.R | 2 tests/testthat/test-summarize_videos_in_volume.R |only vignettes/databrary.Rmd | 2 48 files changed, 1543 insertions(+), 469 deletions(-)
Title: A Toolbox for Conditional Inference Trees and Random Forests
Description: Additions to 'party' and 'partykit' packages : tools for the interpretation of forests (surrogate trees, prototypes, etc.), feature selection (see Gregorutti et al (2017) <arXiv:1310.5726>, Hapfelmeier and Ulm (2013) <doi:10.1016/j.csda.2012.09.020>, Altmann et al (2010) <doi:10.1093/bioinformatics/btq134>) and parallelized versions of conditional forest and variable importance functions. Also modules and a shiny app for conditional inference trees.
Author: Nicolas Robette
Maintainer: Nicolas Robette <nicolas.robette@uvsq.fr>
Diff between moreparty versions 0.3.3 dated 2023-10-05 and 0.4 dated 2023-11-22
DESCRIPTION | 6 MD5 | 28 ++-- NAMESPACE | 5 NEWS.md | 16 ++ R/GetSplitStats.R | 43 +++--- R/NiceTreePlot.R | 18 +- R/NodeTreePlot.R |only R/NodesInfo.R |only R/PerfsBinClassif.R |only R/PerfsRegression.R |only R/TreeStab.R |only R/helpers.R | 108 +++++++++++++++ inst/doc/Titanic_example.html | 294 +++++++++++++++++++++--------------------- man/GetSplitStats.Rd | 15 +- man/NiceTreePlot.Rd | 4 man/NodeTreePlot.Rd |only man/NodesInfo.Rd |only man/PerfsBinClassif.Rd |only man/PerfsRegression.Rd |only man/TreeStab.Rd |only 20 files changed, 352 insertions(+), 185 deletions(-)
Title: Diversity-Interactions (DI) Models
Description: The 'DImodels' package is suitable for analysing data from biodiversity and ecosystem function studies using the Diversity-Interactions (DI) modelling approach introduced by Kirwan et al. (2009) <doi:10.1890/08-1684.1>. Suitable data will contain proportions for each species and a community-level response variable, and may also include additional factors, such as blocks or treatments. The package can perform data manipulation tasks, such as computing pairwise interactions (the DI_data() function), can perform an automated model selection process (the autoDI() function) and has the flexibility to fit a wide range of user-defined DI models (the DI() function).
Author: Rafael de Andrade Moral [aut, cre],
John Connolly [aut],
Rishabh Vishwakarma [ctb],
Caroline Brophy [aut]
Maintainer: Rafael de Andrade Moral <rafael.deandrademoral@mu.ie>
Diff between DImodels versions 1.2.1 dated 2023-05-22 and 1.3 dated 2023-11-22
DESCRIPTION | 9 MD5 | 40 - R/DI.R | 122 +++-- R/DI_internal.R | 54 +- R/autoDI.R | 15 R/autoDI_internal.R | 43 + R/dataDI.R | 97 ++++ R/predictDI.R | 538 ++++++++++++++---------- README.md | 348 +++++++++++++-- build/partial.rdb |binary inst/doc/DImodels.R | 78 +++ inst/doc/DImodels.Rmd | 121 +++++ inst/doc/DImodels.html | 873 +++++++++++++++++++++++++--------------- man/DI.Rd | 36 + man/autoDI.Rd | 23 + man/predict.DI.Rd | 12 tests/testthat/test-DI.R | 51 ++ tests/testthat/test-autoDI.R | 2 tests/testthat/test-dataDI.R | 7 tests/testthat/test-predictDI.R | 169 +++++++ vignettes/DImodels.Rmd | 121 +++++ 21 files changed, 2007 insertions(+), 752 deletions(-)
Title: Estimate Smooth and Linear Trends from Population Count Survey
Data
Description: Functions to estimate and plot smooth or linear population trends, or population indices,
from animal or plant count survey data.
Author: Jonas Knape [aut, cre]
Maintainer: Jonas Knape <jonas.knape@slu.se>
Diff between poptrend versions 0.1.0 dated 2016-12-13 and 0.2.0 dated 2023-11-22
DESCRIPTION | 9 +++-- MD5 | 31 ++++++++++---------- R/trendAnalysis.R | 79 ++++++++++++++++++++++++++++++++++----------------- R/trendFit.R | 34 ++++++++++++++------- README.md |only man/change.Rd | 1 man/checkFit.Rd | 7 +--- man/goldcrest.Rd | 7 ++-- man/greenfinch.Rd | 7 ++-- man/hessBootstrap.Rd | 1 man/plot.trend.Rd | 29 ++++++++++++++---- man/poptrend.Rd | 2 - man/print.trend.Rd | 1 man/ptrend.Rd | 17 +++++++++- man/simTrend.Rd | 1 man/summary.trend.Rd | 1 man/trend.Rd | 4 -- 17 files changed, 146 insertions(+), 85 deletions(-)
Title: Resampling Methods for Triangular and Trapezoidal Fuzzy Numbers
Description: The classical (i.e. Efron's, see Efron and Tibshirani (1994, ISBN:978-0412042317) "An Introduction to the Bootstrap") bootstrap is widely used for both the real (i.e. "crisp") and fuzzy data.
The main aim of the algorithms implemented in this package is to overcome a problem with repetition of a few distinct values and to create fuzzy numbers, which are "similar" (but not the same) to values from the initial sample.
To do this, different characteristics of triangular/trapezoidal numbers are kept (like the value, the ambiguity, etc., see Grzegorzewski et al. <doi:10.2991/eusflat-19.2019.68>, Grzegorzewski et al. (2020) <doi:10.2991/ijcis.d.201012.003>, Grzegorzewski et al. (2020) <doi:10.34768/amcs-2020-0022>, Grzegorzewski and Romaniuk (2022) <doi:10.1007/978-3-030-95929-6_3>, Romaniuk and Hryniewicz (2019) <doi:10.1007/s00500-018-3251-5>).
Some additional procedures related to these resampling methods are also provided,
like calculation of the Bertoluz [...truncated...]
Author: Maciej Romaniuk [aut, cre],
Przemyslaw Grzegorzewski [aut],
Olgierd Hryniewicz [aut]
Maintainer: Maciej Romaniuk <mroman@ibspan.waw.pl>
Diff between FuzzyResampling versions 0.6.2 dated 2023-09-25 and 0.6.3 dated 2023-11-22
DESCRIPTION | 6 ++--- MD5 | 18 +++++++-------- R/GeneratorFuzzyNumbers.R | 4 +-- R/GeneratorNExpUU.R | 4 +-- R/GeneratorNU.R | 4 +-- README.md | 33 +++++++++++++++++----------- build/partial.rdb |binary tests/testthat/test-GeneratorFuzzyNumbers.R | 4 +-- tests/testthat/test-GeneratorNExpUU.R | 4 +-- tests/testthat/test-GeneratorNU.R | 6 ++--- 10 files changed, 46 insertions(+), 37 deletions(-)
More information about FuzzyResampling at CRAN
Permanent link
Title: Stationary Vine Copula Models
Description: Provides functionality to fit and simulate from stationary vine
copula models for time series, see Nagler et al. (2022)
<doi:10.1016/j.jeconom.2021.11.015>.
Author: Thomas Nagler [aut, cre]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between svines versions 0.2.0 dated 2023-11-21 and 0.2.1 dated 2023-11-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/Makevars | 1 + src/Makevars.win | 2 +- 4 files changed, 8 insertions(+), 7 deletions(-)
More information about StateLevelForest at CRAN
Permanent link
Title: Processing and Transforming Relational Event History Data
Description: Efficiently processes relational event history data and transforms them into formats suitable for other packages. The primary objective of this package is to convert event history data into a format that integrates with the packages in 'remverse' and is compatible with various analytical tools (e.g., computing network statistics, estimating tie-oriented or actor-oriented social network models). Second, it can also transform the data into formats compatible with other packages out of 'remverse'. The package processes the data for two types of temporal social network models: tie-oriented modeling framework (Butts, C., 2008, <doi:10.1111/j.1467-9531.2008.00203.x>) and actor-oriented modeling framework (Stadtfeld, C., & Block, P., 2017, <doi:10.15195/v4.a14>).
Author: Giuseppe Arena [aut, cre],
Rumana Lakdawala [ctb],
Marlyne Meijerink-Bosman [ctb],
Diana Karimova [ctb],
Fabio Generoso Vieira [ctb],
Mahdi Shafiee Kamalabad [ctb],
Roger Leenders [ctb],
Joris Mulder [ctb]
Maintainer: Giuseppe Arena <g.arena@tilburguniversity.edu>
Diff between remify versions 3.2.0 dated 2023-11-07 and 3.2.2 dated 2023-11-22
remify-3.2.0/remify/tests/tinytest |only remify-3.2.2/remify/DESCRIPTION | 9 remify-3.2.2/remify/MD5 | 46 +- remify-3.2.2/remify/R/remify.R | 86 +++- remify-3.2.2/remify/inst/doc/rehshape.Rmd | 5 remify-3.2.2/remify/inst/doc/rehshape.html | 424 --------------------- remify-3.2.2/remify/inst/doc/remify.R | 18 remify-3.2.2/remify/inst/doc/remify.Rmd | 31 + remify-3.2.2/remify/inst/doc/remify.html | 105 +++-- remify-3.2.2/remify/inst/doc/riskset.R | 22 - remify-3.2.2/remify/inst/doc/riskset.Rmd | 25 - remify-3.2.2/remify/inst/doc/riskset.html | 34 - remify-3.2.2/remify/inst/tinytest |only remify-3.2.2/remify/src/Makevars | 4 remify-3.2.2/remify/src/Makevars.win | 4 remify-3.2.2/remify/src/messages.h | 18 remify-3.2.2/remify/src/remify.cpp | 567 +++++++++++++++++------------ remify-3.2.2/remify/tests/tinytest.R | 7 remify-3.2.2/remify/vignettes/rehshape.Rmd | 5 remify-3.2.2/remify/vignettes/remify.Rmd | 31 + remify-3.2.2/remify/vignettes/riskset.Rmd | 25 - 21 files changed, 649 insertions(+), 817 deletions(-)
More information about public.ctn0094extra at CRAN
Permanent link
Title: HTML Widgets for R
Description: A framework for creating HTML widgets that render in various
contexts including the R console, 'R Markdown' documents, and 'Shiny'
web applications.
Author: Ramnath Vaidyanathan [aut, cph],
Yihui Xie [aut],
JJ Allaire [aut],
Joe Cheng [aut],
Carson Sievert [aut, cre] ,
Kenton Russell [aut, cph],
Ellis Hughes [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Carson Sievert <carson@posit.co>
Diff between htmlwidgets versions 1.6.2 dated 2023-03-17 and 1.6.3 dated 2023-11-22
htmlwidgets-1.6.2/htmlwidgets/R/imports.R |only htmlwidgets-1.6.3/htmlwidgets/DESCRIPTION | 39 +++--- htmlwidgets-1.6.3/htmlwidgets/LICENSE | 2 htmlwidgets-1.6.3/htmlwidgets/MD5 | 32 ++--- htmlwidgets-1.6.3/htmlwidgets/NEWS.md | 69 ++++------- htmlwidgets-1.6.3/htmlwidgets/R/htmlwidgets-package.R |only htmlwidgets-1.6.3/htmlwidgets/R/htmlwidgets.R | 16 -- htmlwidgets-1.6.3/htmlwidgets/R/staticimports.R | 22 ++- htmlwidgets-1.6.3/htmlwidgets/R/utils.R | 4 htmlwidgets-1.6.3/htmlwidgets/build/vignette.rds |binary htmlwidgets-1.6.3/htmlwidgets/inst/doc/develop_advanced.R | 2 htmlwidgets-1.6.3/htmlwidgets/inst/doc/develop_advanced.html | 6 htmlwidgets-1.6.3/htmlwidgets/inst/doc/develop_intro.R | 2 htmlwidgets-1.6.3/htmlwidgets/inst/doc/develop_intro.Rmd | 2 htmlwidgets-1.6.3/htmlwidgets/inst/doc/develop_intro.html | 6 htmlwidgets-1.6.3/htmlwidgets/inst/doc/develop_sizing.html | 4 htmlwidgets-1.6.3/htmlwidgets/man/htmlwidgets-package.Rd | 30 ++-- htmlwidgets-1.6.3/htmlwidgets/vignettes/develop_intro.Rmd | 2 18 files changed, 114 insertions(+), 124 deletions(-)
Title: Implementation of the Vegetation Model ModVege
Description: Run grass growth simulations using a grass growth model based
on ModVege (Jouven, M., P. Carrère, and R. Baumont "Model Predicting
Dynamics of Biomass, Structure and Digestibility of Herbage in Managed
Permanent Pastures. 1. Model Description." (2006)
<doi:10.1111/j.1365-2494.2006.00515.x>). The implementation in
this package contains a few additions to the above cited version of ModVege,
such as simulations of management decisions, and influences of snow cover.
As such, the model is fit to simulate grass growth in mountainous
regions, such as the Swiss Alps. The package also contains routines for
calibrating the model and helpful tools for analysing model outputs and
performance.
Author: Kevin Kramer [aut, cre, cph]
Maintainer: Kevin Kramer <kevin.pasqual.kramer@protonmail.ch>
Diff between growR versions 1.0.0 dated 2023-10-16 and 1.1.0 dated 2023-11-22
growR-1.0.0/growR/man/DEBUG_LEVELS.Rd |only growR-1.0.0/growR/man/ERROR.Rd |only growR-1.1.0/growR/DESCRIPTION | 8 growR-1.1.0/growR/MD5 | 115 growR-1.1.0/growR/NAMESPACE | 6 growR-1.1.0/growR/NEWS.md | 62 growR-1.1.0/growR/R/combinator.R | 16 growR-1.1.0/growR/R/environment.R | 13 growR-1.1.0/growR/R/management.R | 29 growR-1.1.0/growR/R/modvegesite.R | 243 growR-1.1.0/growR/R/parameter_scan.R | 233 growR-1.1.0/growR/R/parameters.R | 186 growR-1.1.0/growR/R/plot.R | 38 growR-1.1.0/growR/R/run.R | 26 growR-1.1.0/growR/R/setup.R | 4 growR-1.1.0/growR/R/support_functions.R | 10 growR-1.1.0/growR/R/utilities.R | 90 growR-1.1.0/growR/R/weather.R | 68 growR-1.1.0/growR/README.md | 81 growR-1.1.0/growR/build/partial.rdb |binary growR-1.1.0/growR/build/vignette.rds |binary growR-1.1.0/growR/inst/doc/calibration.R |only growR-1.1.0/growR/inst/doc/calibration.Rmd |only growR-1.1.0/growR/inst/doc/calibration.html |only growR-1.1.0/growR/inst/doc/growR.R | 15 growR-1.1.0/growR/inst/doc/growR.Rmd | 13 growR-1.1.0/growR/inst/doc/growR.html | 221 growR-1.1.0/growR/inst/doc/parameter_descriptions.R | 2 growR-1.1.0/growR/inst/doc/parameter_descriptions.html | 29 growR-1.1.0/growR/inst/extdata/posieux1.csv | 334 growR-1.1.0/growR/inst/extdata/posieux2.csv | 334 growR-1.1.0/growR/inst/extdata/posieux_weather.txt | 7306 ++-- growR-1.1.0/growR/inst/extdata/sorens1.csv | 334 growR-1.1.0/growR/inst/extdata/sorens2.csv | 334 growR-1.1.0/growR/inst/extdata/sorens_weather.txt |16804 +++++----- growR-1.1.0/growR/inst/scripts/compare.R | 26 growR-1.1.0/growR/man/ManagementData.Rd | 19 growR-1.1.0/growR/man/ModvegeEnvironment.Rd | 18 growR-1.1.0/growR/man/ModvegeParameters.Rd | 28 growR-1.1.0/growR/man/ModvegeSite.Rd | 163 growR-1.1.0/growR/man/PscanPlotter.Rd | 28 growR-1.1.0/growR/man/WeatherData.Rd | 47 growR-1.1.0/growR/man/analyze_parameter_scan.Rd | 33 growR-1.1.0/growR/man/browse.Rd |only growR-1.1.0/growR/man/create_combinations.Rd | 19 growR-1.1.0/growR/man/ensure_table_columns.Rd |only growR-1.1.0/growR/man/growR_run_loop.Rd | 15 growR-1.1.0/growR/man/load_measured_data.Rd | 34 growR-1.1.0/growR/man/make_yearDOY.Rd |only growR-1.1.0/growR/man/plot.ModvegeSite.Rd |only growR-1.1.0/growR/man/plot_parameter_scan.Rd | 10 growR-1.1.0/growR/man/run_parameter_scan.Rd | 5 growR-1.1.0/growR/tests/testthat/_snaps/management |only growR-1.1.0/growR/tests/testthat/_snaps/modvegesite/modvege_reference_output.dat | 745 growR-1.1.0/growR/tests/testthat/_snaps/parameters |only growR-1.1.0/growR/tests/testthat/_snaps/weather |only growR-1.1.0/growR/tests/testthat/test-management.R |only growR-1.1.0/growR/tests/testthat/test-modvegesite.R | 13 growR-1.1.0/growR/tests/testthat/test-parameters.R |only growR-1.1.0/growR/tests/testthat/test-plot.R |only growR-1.1.0/growR/tests/testthat/test-run.R | 3 growR-1.1.0/growR/tests/testthat/test-weather.R |only growR-1.1.0/growR/vignettes/calibration.Rmd |only growR-1.1.0/growR/vignettes/children/parameters.Rmd | 12 growR-1.1.0/growR/vignettes/children/weather_parameters.Rmd | 17 growR-1.1.0/growR/vignettes/figs |only growR-1.1.0/growR/vignettes/growR.Rmd | 13 67 files changed, 14564 insertions(+), 13638 deletions(-)
Title: Approximate Optimal Experimental Designs Using Generalised
Linear Mixed Models
Description: Optimal design analysis algorithms for any study design that can be represented or
modelled as a generalised linear mixed model including cluster randomised trials,
cohort studies, spatial and temporal epidemiological studies, and split-plot designs.
See <https://github.com/samuel-watson/glmmrBase/blob/master/README.md> for a
detailed manual on model specification. A detailed discussion of the methods in this
package can be found in Watson and Pan (2022) <arXiv:2207.09183>.
Author: Sam Watson [aut, cre],
Yi Pan [aut]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
Diff between glmmrOptim versions 0.3.2 dated 2023-09-11 and 0.3.3 dated 2023-11-22
DESCRIPTION | 10 ++--- MD5 | 10 ++--- R/R6designspace.R | 15 +++----- man/apportion.Rd | 98 +++++++++++++++++++++++++++--------------------------- src/Makevars | 2 - src/Makevars.win | 2 - 6 files changed, 68 insertions(+), 69 deletions(-)
Title: Contrast Trees and Boosting
Description: Contrast trees represent a new approach for assessing the
accuracy of many types of machine learning estimates that are not
amenable to standard (cross) validation methods; see "Contrast
trees and distribution boosting", Jerome H. Friedman (2020)
<doi:10.1073/pnas.1921562117>. In situations where inaccuracies
are detected, boosted contrast trees can often improve
performance. Functions are provided to to build such trees in
addition to a special case, distribution boosting, an assumption
free method for estimating the full probability distribution of an
outcome variable given any set of joint input predictor variable
values.
Author: Jerome Friedman [aut, cph],
Balasubramanian Narasimhan [aut, cre]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between conTree versions 0.3 dated 2023-06-07 and 0.3-1 dated 2023-11-22
DESCRIPTION | 6 ++-- MD5 | 12 ++++---- NEWS.md | 4 ++ README.md | 1 build/vignette.rds |binary inst/doc/contree.html | 4 +- src/contrast.f | 70 ++++++++++++++++++++++++++++++++------------------ 7 files changed, 62 insertions(+), 35 deletions(-)
Title: Extension to 'ggplot2'
Description: The R package 'ggplot2' is a plotting system based on the grammar of graphics.
'GGally' extends 'ggplot2' by adding several functions
to reduce the complexity of combining geometric objects with transformed data.
Some of these functions include a pairwise plot matrix, a two group pairwise plot
matrix, a parallel coordinates plot, a survival plot, and several functions to
plot networks.
Author: Barret Schloerke [aut, cre],
Di Cook [aut, ths],
Joseph Larmarange [aut],
Francois Briatte [aut],
Moritz Marbach [aut],
Edwin Thoen [aut],
Amos Elberg [aut],
Ott Toomet [ctb],
Jason Crowley [aut],
Heike Hofmann [ths],
Hadley Wickham [ths]
Maintainer: Barret Schloerke <schloerke@gmail.com>
Diff between GGally versions 2.1.2 dated 2021-06-21 and 2.2.0 dated 2023-11-22
GGally-2.1.2/GGally/R/geom_stripped_rows.R |only GGally-2.1.2/GGally/R/ggcoef_model.R |only GGally-2.1.2/GGally/R/stars.R |only GGally-2.1.2/GGally/R/stat_cross.R |only GGally-2.1.2/GGally/R/stat_prop.R |only GGally-2.1.2/GGally/R/stat_weighted_mean.R |only GGally-2.1.2/GGally/man/geom_stripped_rows.Rd |only GGally-2.1.2/GGally/man/ggcoef_model.Rd |only GGally-2.1.2/GGally/man/signif_stars.Rd |only GGally-2.1.2/GGally/man/stat_cross.Rd |only GGally-2.1.2/GGally/man/stat_prop.Rd |only GGally-2.1.2/GGally/man/stat_weighted_mean.Rd |only GGally-2.1.2/GGally/tests/testthat/test-ggcoef_model.R |only GGally-2.1.2/GGally/tests/testthat/test-stat_cross.R |only GGally-2.1.2/GGally/tests/testthat/test-stat_prop.R |only GGally-2.1.2/GGally/tests/testthat/test-stat_weighted_mean.R |only GGally-2.2.0/GGally/DESCRIPTION | 20 GGally-2.2.0/GGally/MD5 | 274 +++--- GGally-2.2.0/GGally/NAMESPACE | 26 GGally-2.2.0/GGally/NEWS.md | 17 GGally-2.2.0/GGally/R/GGally-package.R | 12 GGally-2.2.0/GGally/R/data-baseball.R |only GGally-2.2.0/GGally/R/data-tips.R |only GGally-2.2.0/GGally/R/deprecated.R | 50 - GGally-2.2.0/GGally/R/find-combo.R | 9 GGally-2.2.0/GGally/R/gg-plots.R | 475 ++++------ GGally-2.2.0/GGally/R/ggally_colbar.R |only GGally-2.2.0/GGally/R/ggally_cross.R |only GGally-2.2.0/GGally/R/ggaly_trends.R |only GGally-2.2.0/GGally/R/ggbivariate.R | 52 - GGally-2.2.0/GGally/R/ggcoef.R | 57 - GGally-2.2.0/GGally/R/ggcorr.R | 290 ++---- GGally-2.2.0/GGally/R/ggfacet.R | 36 GGally-2.2.0/GGally/R/gglyph.R | 112 +- GGally-2.2.0/GGally/R/ggmatrix.R | 46 - GGally-2.2.0/GGally/R/ggmatrix_gtable.R | 30 GGally-2.2.0/GGally/R/ggmatrix_gtable_helpers.R | 19 GGally-2.2.0/GGally/R/ggmatrix_legend.R | 13 GGally-2.2.0/GGally/R/ggmatrix_make_plot.R | 4 GGally-2.2.0/GGally/R/ggmatrix_print.R | 22 GGally-2.2.0/GGally/R/ggmatrix_progress.R | 9 GGally-2.2.0/GGally/R/ggnet.R | 32 GGally-2.2.0/GGally/R/ggnet2.R | 52 - GGally-2.2.0/GGally/R/ggnetworkmap.R | 202 ++-- GGally-2.2.0/GGally/R/ggnostic.R | 250 ++--- GGally-2.2.0/GGally/R/ggpairs.R | 496 +++++----- GGally-2.2.0/GGally/R/ggpairs_add.R | 53 - GGally-2.2.0/GGally/R/ggpairs_getput.R | 27 GGally-2.2.0/GGally/R/ggpairs_internal_plots.R | 19 GGally-2.2.0/GGally/R/ggparcoord.R | 248 ++--- GGally-2.2.0/GGally/R/ggsave.R | 2 GGally-2.2.0/GGally/R/ggscatmat.R | 398 +++++--- GGally-2.2.0/GGally/R/ggsurv.R | 210 ++-- GGally-2.2.0/GGally/R/ggtable.R | 40 GGally-2.2.0/GGally/R/reexports.R |only GGally-2.2.0/GGally/R/utils-pipe.R |only GGally-2.2.0/GGally/R/utils.R | 10 GGally-2.2.0/GGally/R/vig_ggally.R | 24 GGally-2.2.0/GGally/README.md | 3 GGally-2.2.0/GGally/build/GGally.pdf |binary GGally-2.2.0/GGally/build/stage23.rdb |only GGally-2.2.0/GGally/data/baseball.rda |only GGally-2.2.0/GGally/data/tips.rda |only GGally-2.2.0/GGally/inst/WORDLIST | 8 GGally-2.2.0/GGally/man/GGally-package.Rd | 7 GGally-2.2.0/GGally/man/add_and_overwrite_aes.Rd | 9 GGally-2.2.0/GGally/man/baseball.Rd |only GGally-2.2.0/GGally/man/getPlot.Rd | 2 GGally-2.2.0/GGally/man/gg-add.Rd | 2 GGally-2.2.0/GGally/man/ggally_autopoint.Rd | 2 GGally-2.2.0/GGally/man/ggally_barDiag.Rd | 2 GGally-2.2.0/GGally/man/ggally_box.Rd | 5 GGally-2.2.0/GGally/man/ggally_colbar.Rd | 16 GGally-2.2.0/GGally/man/ggally_cor.Rd | 8 GGally-2.2.0/GGally/man/ggally_cor_v1_5.Rd | 8 GGally-2.2.0/GGally/man/ggally_count.Rd | 2 GGally-2.2.0/GGally/man/ggally_cross.Rd | 4 GGally-2.2.0/GGally/man/ggally_crosstable.Rd | 7 GGally-2.2.0/GGally/man/ggally_density.Rd | 7 GGally-2.2.0/GGally/man/ggally_densityDiag.Rd | 2 GGally-2.2.0/GGally/man/ggally_denstrip.Rd | 5 GGally-2.2.0/GGally/man/ggally_diagAxis.Rd | 6 GGally-2.2.0/GGally/man/ggally_dot.Rd | 9 GGally-2.2.0/GGally/man/ggally_dot_and_box.Rd | 2 GGally-2.2.0/GGally/man/ggally_facetbar.Rd | 2 GGally-2.2.0/GGally/man/ggally_facetdensity.Rd | 4 GGally-2.2.0/GGally/man/ggally_facethist.Rd | 4 GGally-2.2.0/GGally/man/ggally_nostic_cooksd.Rd | 2 GGally-2.2.0/GGally/man/ggally_points.Rd | 14 GGally-2.2.0/GGally/man/ggally_ratio.Rd | 7 GGally-2.2.0/GGally/man/ggally_smooth.Rd | 5 GGally-2.2.0/GGally/man/ggally_summarise_by.Rd | 2 GGally-2.2.0/GGally/man/ggally_table.Rd | 6 GGally-2.2.0/GGally/man/ggally_text.Rd | 2 GGally-2.2.0/GGally/man/ggally_trends.Rd | 4 GGally-2.2.0/GGally/man/ggbivariate.Rd | 2 GGally-2.2.0/GGally/man/ggcoef.Rd | 13 GGally-2.2.0/GGally/man/ggcorr.Rd | 5 GGally-2.2.0/GGally/man/ggduo.Rd | 179 ++- GGally-2.2.0/GGally/man/ggfacet.Rd | 4 GGally-2.2.0/GGally/man/gglegend.Rd | 2 GGally-2.2.0/GGally/man/ggmatrix_gtable.Rd | 4 GGally-2.2.0/GGally/man/ggmatrix_location.Rd | 8 GGally-2.2.0/GGally/man/ggmatrix_progress.Rd | 2 GGally-2.2.0/GGally/man/ggnet.Rd | 6 GGally-2.2.0/GGally/man/ggnet2.Rd | 4 GGally-2.2.0/GGally/man/ggnetworkmap.Rd | 19 GGally-2.2.0/GGally/man/ggnostic.Rd | 8 GGally-2.2.0/GGally/man/ggpairs.Rd | 34 GGally-2.2.0/GGally/man/ggparcoord.Rd | 53 - GGally-2.2.0/GGally/man/ggsurv.Rd | 20 GGally-2.2.0/GGally/man/ggtable.Rd | 21 GGally-2.2.0/GGally/man/glyphs.Rd | 12 GGally-2.2.0/GGally/man/grab_legend.Rd | 10 GGally-2.2.0/GGally/man/is_blank_plot.Rd | 4 GGally-2.2.0/GGally/man/lowertriangle.Rd | 4 GGally-2.2.0/GGally/man/pipe.Rd | 10 GGally-2.2.0/GGally/man/print.ggmatrix.Rd | 6 GGally-2.2.0/GGally/man/putPlot.Rd | 14 GGally-2.2.0/GGally/man/reexports.Rd |only GGally-2.2.0/GGally/man/scatmat.Rd | 4 GGally-2.2.0/GGally/man/tips.Rd |only GGally-2.2.0/GGally/man/uppertriangle.Rd | 4 GGally-2.2.0/GGally/man/wrap.Rd | 4 GGally-2.2.0/GGally/tests/spelling.R | 8 GGally-2.2.0/GGally/tests/testthat.R | 3 GGally-2.2.0/GGally/tests/testthat/test-crosstalk.R | 20 GGally-2.2.0/GGally/tests/testthat/test-deprecated.R | 6 GGally-2.2.0/GGally/tests/testthat/test-gg-plots.R | 89 - GGally-2.2.0/GGally/tests/testthat/test-ggally_colbar.R |only GGally-2.2.0/GGally/tests/testthat/test-ggally_cross.R |only GGally-2.2.0/GGally/tests/testthat/test-ggally_trends.R |only GGally-2.2.0/GGally/tests/testthat/test-ggbivariate.R | 38 GGally-2.2.0/GGally/tests/testthat/test-ggcoef.R | 15 GGally-2.2.0/GGally/tests/testthat/test-ggcorr.R | 50 - GGally-2.2.0/GGally/tests/testthat/test-ggfacet.R | 72 - GGally-2.2.0/GGally/tests/testthat/test-gglegend.R | 74 - GGally-2.2.0/GGally/tests/testthat/test-gglyph.R | 38 GGally-2.2.0/GGally/tests/testthat/test-ggmatrix.R | 31 GGally-2.2.0/GGally/tests/testthat/test-ggmatrix_add.R | 13 GGally-2.2.0/GGally/tests/testthat/test-ggmatrix_getput.R | 17 GGally-2.2.0/GGally/tests/testthat/test-ggmatrix_location.R | 30 GGally-2.2.0/GGally/tests/testthat/test-ggnet.R | 51 - GGally-2.2.0/GGally/tests/testthat/test-ggnet2.R | 23 GGally-2.2.0/GGally/tests/testthat/test-ggnetworkmap.R | 62 - GGally-2.2.0/GGally/tests/testthat/test-ggnostic.R | 33 GGally-2.2.0/GGally/tests/testthat/test-ggparcoord.R | 39 GGally-2.2.0/GGally/tests/testthat/test-ggsave.R | 5 GGally-2.2.0/GGally/tests/testthat/test-ggscatmat.R | 15 GGally-2.2.0/GGally/tests/testthat/test-ggsurv.R | 101 -- GGally-2.2.0/GGally/tests/testthat/test-ggtable.R | 47 - GGally-2.2.0/GGally/tests/testthat/test-utils.R | 1 GGally-2.2.0/GGally/tests/testthat/test-wrap.R | 2 GGally-2.2.0/GGally/tests/testthat/test-zzz_ggpairs.R | 497 ++++++----- 154 files changed, 2837 insertions(+), 2803 deletions(-)
Title: Engression Modelling
Description: Fits engression models for nonlinear distributional regression. Predictors and targets can be univariate or multivariate. Functionality includes estimation of conditional mean, estimation of conditional quantiles, or sampling from the fitted distribution. Training is done full-batch on CPU (the python version offers GPU-accelerated stochastic gradient descent). Based on "Engression: Extrapolation for nonlinear regression?" by Xinwei Shen and Nicolai Meinshausen (2023). Also supports classification (experimental).
<arxiv:2307.00835>.
Author: Xinwei Shen [aut],
Nicolai Meinshausen [aut, cre]
Maintainer: Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>
Diff between engression versions 0.1.3 dated 2023-09-15 and 0.1.4 dated 2023-11-22
engression-0.1.3/engression/R/engressionBagged.R |only engression-0.1.3/engression/R/predict.engressionBagged.R |only engression-0.1.3/engression/R/print.engressionBagged.R |only engression-0.1.3/engression/man/engressionBagged.Rd |only engression-0.1.3/engression/man/predict.engressionBagged.Rd |only engression-0.1.3/engression/man/print.engressionBagged.Rd |only engression-0.1.4/engression/DESCRIPTION | 9 ++++--- engression-0.1.4/engression/MD5 | 14 +++--------- engression-0.1.4/engression/NAMESPACE | 3 -- engression-0.1.4/engression/R/engression.R | 4 +-- engression-0.1.4/engression/man/engression.Rd | 4 +-- 11 files changed, 13 insertions(+), 21 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-22 2.0.0
2023-09-22 2.0.1