Title: Simulate Data from State Space Models
Description: Provides a streamlined and user-friendly framework
for simulating data in state space models,
particularly when the number of subjects/units (n) exceeds one,
a scenario commonly encountered in social and behavioral sciences.
For an introduction to state space models in social and behavioral sciences,
refer to Chow, Ho, Hamaker, and Dolan (2010) <doi:10.1080/10705511003661553>.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between simStateSpace versions 1.0.1 dated 2023-11-17 and 1.1.0 dated 2024-01-15
simStateSpace-1.0.1/simStateSpace/R/simStateSpace-list-2-matrix.R |only simStateSpace-1.0.1/simStateSpace/R/simStateSpace-sim-ssm-0-vary.R |only simStateSpace-1.0.1/simStateSpace/R/simStateSpace-sim-ssm-ou-vary.R |only simStateSpace-1.0.1/simStateSpace/R/simStateSpace-sim-ssm-var-vary.R |only simStateSpace-1.0.1/simStateSpace/man/Sim2Matrix.Rd |only simStateSpace-1.0.1/simStateSpace/man/SimSSM0.Rd |only simStateSpace-1.0.1/simStateSpace/man/SimSSM0Fixed.Rd |only simStateSpace-1.0.1/simStateSpace/man/SimSSM0Vary.Rd |only simStateSpace-1.0.1/simStateSpace/man/SimSSMOUVary.Rd |only simStateSpace-1.0.1/simStateSpace/man/SimSSMVARVary.Rd |only simStateSpace-1.0.1/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-0-fixed.R |only simStateSpace-1.0.1/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-0-vary.R |only simStateSpace-1.0.1/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-ou-vary.R |only simStateSpace-1.0.1/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-var-vary.R |only simStateSpace-1.1.0/simStateSpace/DESCRIPTION | 8 simStateSpace-1.1.0/simStateSpace/MD5 | 78 simStateSpace-1.1.0/simStateSpace/NAMESPACE | 17 simStateSpace-1.1.0/simStateSpace/NEWS.md | 10 simStateSpace-1.1.0/simStateSpace/R/RcppExports.R | 867 --- simStateSpace-1.1.0/simStateSpace/R/methods.R |only simStateSpace-1.1.0/simStateSpace/R/simStateSpace-sim-ssm-fixed.R |only simStateSpace-1.1.0/simStateSpace/R/simStateSpace-sim-ssm-i-vary.R |only simStateSpace-1.1.0/simStateSpace/R/simStateSpace-sim-ssm-lin-growth-i-vary.R |only simStateSpace-1.1.0/simStateSpace/R/simStateSpace-sim-ssm-lin-growth.R |only simStateSpace-1.1.0/simStateSpace/R/simStateSpace-sim-ssm-ou-fixed.R |only simStateSpace-1.1.0/simStateSpace/R/simStateSpace-sim-ssm-ou-i-vary.R |only simStateSpace-1.1.0/simStateSpace/R/simStateSpace-sim-ssm-ou.R |only simStateSpace-1.1.0/simStateSpace/R/simStateSpace-sim-ssm-var-fixed.R |only simStateSpace-1.1.0/simStateSpace/R/simStateSpace-sim-ssm-var-i-vary.R |only simStateSpace-1.1.0/simStateSpace/R/simStateSpace-sim-ssm-var.R |only simStateSpace-1.1.0/simStateSpace/R/simStateSpace-sim-ssm.R |only simStateSpace-1.1.0/simStateSpace/build/partial.rdb |binary simStateSpace-1.1.0/simStateSpace/man/OU2SSM.Rd | 40 simStateSpace-1.1.0/simStateSpace/man/SimSSM.Rd |only simStateSpace-1.1.0/simStateSpace/man/SimSSMFixed.Rd |only simStateSpace-1.1.0/simStateSpace/man/SimSSMIVary.Rd |only simStateSpace-1.1.0/simStateSpace/man/SimSSMLinGrowth.Rd |only simStateSpace-1.1.0/simStateSpace/man/SimSSMLinGrowthIVary.Rd |only simStateSpace-1.1.0/simStateSpace/man/SimSSMOU.Rd | 308 - simStateSpace-1.1.0/simStateSpace/man/SimSSMOUFixed.Rd | 313 - simStateSpace-1.1.0/simStateSpace/man/SimSSMOUIVary.Rd |only simStateSpace-1.1.0/simStateSpace/man/SimSSMVAR.Rd | 178 simStateSpace-1.1.0/simStateSpace/man/SimSSMVARFixed.Rd | 116 simStateSpace-1.1.0/simStateSpace/man/SimSSMVARIVary.Rd |only simStateSpace-1.1.0/simStateSpace/man/as.data.frame.simstatespace.Rd |only simStateSpace-1.1.0/simStateSpace/man/as.matrix.simstatespace.Rd |only simStateSpace-1.1.0/simStateSpace/man/plot.simstatespace.Rd |only simStateSpace-1.1.0/simStateSpace/man/print.simstatespace.Rd |only simStateSpace-1.1.0/simStateSpace/man/simStateSpace-package.Rd | 2 simStateSpace-1.1.0/simStateSpace/src/RcppExports.cpp | 624 ++ simStateSpace-1.1.0/simStateSpace/src/source.cpp | 2628 ++++++---- simStateSpace-1.1.0/simStateSpace/tests/testthat/test-simStateSpace-ou-2-ssm.R | 21 simStateSpace-1.1.0/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-fixed.R |only simStateSpace-1.1.0/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-i-vary.R |only simStateSpace-1.1.0/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-lin-growth-i-vary.R |only simStateSpace-1.1.0/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-lin-growth.R |only simStateSpace-1.1.0/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-ou-fixed.R | 174 simStateSpace-1.1.0/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-ou-i-vary.R |only simStateSpace-1.1.0/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-ou.R |only simStateSpace-1.1.0/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-var-fixed.R | 60 simStateSpace-1.1.0/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-var-i-vary.R |only simStateSpace-1.1.0/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-var.R |only simStateSpace-1.1.0/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm.R |only 63 files changed, 3491 insertions(+), 1953 deletions(-)
Title: Archive and Unarchive Databases Using Flat Files
Description: Flat text files provide a robust, compressible, and portable
way to store tables from databases. This package provides convenient
functions for exporting tables from relational database connections
into compressed text files and streaming those text files back into
a database without requiring the whole table to fit in working memory.
Author: Carl Boettiger [aut, cre, cph]
,
Richard FitzJohn [ctb],
Brandon Bertelsen [ctb]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between arkdb versions 0.0.17 dated 2024-01-08 and 0.0.18 dated 2024-01-15
DESCRIPTION | 9 ++--- MD5 | 10 ++--- NEWS.md | 4 ++ build/vignette.rds |binary inst/doc/arkdb.html | 78 ++++++++++++++++++++++---------------------- tests/testthat/test-arkdb.R | 3 + 6 files changed, 55 insertions(+), 49 deletions(-)
Title: Extensible, Parallelizable Implementation of the Random Forest
Algorithm
Description: Scalable implementation of classification and regression forests, as described by Breiman (2001), <DOI:10.1023/A:1010933404324>.
Author: Mark Seligman
Maintainer: Mark Seligman <mseligman@suiji.org>
Diff between Rborist versions 0.3-5 dated 2023-07-12 and 0.3-7 dated 2024-01-15
Rborist-0.3-5/Rborist/R/predict.rfArb.R |only Rborist-0.3-5/Rborist/man/predict.rfArb.Rd |only Rborist-0.3-5/Rborist/src/decnoderw.cc |only Rborist-0.3-5/Rborist/src/decnoderw.h |only Rborist-0.3-5/Rborist/src/expandR.cc |only Rborist-0.3-5/Rborist/src/expandR.h |only Rborist-0.3-5/Rborist/src/forestrw.cc |only Rborist-0.3-5/Rborist/src/forestrw.h |only Rborist-0.3-5/Rborist/src/rftrain.cc |only Rborist-0.3-5/Rborist/src/rftrain.h |only Rborist-0.3-5/Rborist/src/samplerrw.cc |only Rborist-0.3-5/Rborist/src/samplerrw.h |only Rborist-0.3-5/Rborist/src/train.cc |only Rborist-0.3-5/Rborist/src/train.h |only Rborist-0.3-5/Rborist/src/trainRF.cc |only Rborist-0.3-5/Rborist/src/trainRF.h |only Rborist-0.3-7/Rborist/DESCRIPTION | 11 Rborist-0.3-7/Rborist/MD5 | 281 +++++------ Rborist-0.3-7/Rborist/NAMESPACE | 3 Rborist-0.3-7/Rborist/R/Export.R | 2 Rborist-0.3-7/Rborist/R/Rborist.R | 2 Rborist-0.3-7/Rborist/R/Streamline.R | 4 Rborist-0.3-7/Rborist/R/deframe.R | 2 Rborist-0.3-7/Rborist/R/expandfe.R | 8 Rborist-0.3-7/Rborist/R/forestWeight.R | 2 Rborist-0.3-7/Rborist/R/getQuantiles.R |only Rborist-0.3-7/Rborist/R/predict.arbTrain.R |only Rborist-0.3-7/Rborist/R/preformat.R | 2 Rborist-0.3-7/Rborist/R/presample.R | 82 ++- Rborist-0.3-7/Rborist/R/rfArb.R | 61 +- Rborist-0.3-7/Rborist/R/rfTrain.R | 46 + Rborist-0.3-7/Rborist/R/validate.R | 9 Rborist-0.3-7/Rborist/build/vignette.rds |binary Rborist-0.3-7/Rborist/man/expandfe.Rd | 4 Rborist-0.3-7/Rborist/man/forestWeight.Rd | 10 Rborist-0.3-7/Rborist/man/predict.arbTrain.Rd |only Rborist-0.3-7/Rborist/man/preformat.Rd | 59 +- Rborist-0.3-7/Rborist/man/presample.Rd | 40 + Rborist-0.3-7/Rborist/man/rfArb.Rd | 82 +-- Rborist-0.3-7/Rborist/man/rfTrain.Rd | 60 +- Rborist-0.3-7/Rborist/man/validate.Rd | 51 - Rborist-0.3-7/Rborist/src/accum.h | 6 Rborist-0.3-7/Rborist/src/bheap.h | 40 + Rborist-0.3-7/Rborist/src/block.h | 10 Rborist-0.3-7/Rborist/src/booster.cc |only Rborist-0.3-7/Rborist/src/booster.h |only Rborist-0.3-7/Rborist/src/branchsense.h | 4 Rborist-0.3-7/Rborist/src/bv.cc | 17 Rborist-0.3-7/Rborist/src/bv.h | 84 +-- Rborist-0.3-7/Rborist/src/cand.h | 2 Rborist-0.3-7/Rborist/src/cartnode.cc |only Rborist-0.3-7/Rborist/src/cartnode.h | 54 -- Rborist-0.3-7/Rborist/src/coproc.h | 4 Rborist-0.3-7/Rborist/src/crit.h | 10 Rborist-0.3-7/Rborist/src/critencoding.h | 4 Rborist-0.3-7/Rborist/src/cutaccum.h | 12 Rborist-0.3-7/Rborist/src/cutaccumcart.h | 2 Rborist-0.3-7/Rborist/src/dectree.cc |only Rborist-0.3-7/Rborist/src/dectree.h |only Rborist-0.3-7/Rborist/src/deframe.cc | 2 Rborist-0.3-7/Rborist/src/deframe.h | 2 Rborist-0.3-7/Rborist/src/dumpR.cc | 11 Rborist-0.3-7/Rborist/src/dumpR.h | 2 Rborist-0.3-7/Rborist/src/exprdumpR.cc | 17 Rborist-0.3-7/Rborist/src/exprdumpR.h | 9 Rborist-0.3-7/Rborist/src/fepredict.cc |only Rborist-0.3-7/Rborist/src/fepredict.h |only Rborist-0.3-7/Rborist/src/fetrain.cc |only Rborist-0.3-7/Rborist/src/fetrain.h |only Rborist-0.3-7/Rborist/src/forest.cc | 86 +-- Rborist-0.3-7/Rborist/src/forest.h | 316 ++---------- Rborist-0.3-7/Rborist/src/forestR.cc | 159 +++++- Rborist-0.3-7/Rborist/src/forestR.h | 92 ++- Rborist-0.3-7/Rborist/src/forestWeightR.cc | 24 Rborist-0.3-7/Rborist/src/forestWeightR.h | 8 Rborist-0.3-7/Rborist/src/forestbridge.cc | 78 --- Rborist-0.3-7/Rborist/src/forestbridge.h | 80 +-- Rborist-0.3-7/Rborist/src/frontier.cc | 70 +- Rborist-0.3-7/Rborist/src/frontier.h | 78 +-- Rborist-0.3-7/Rborist/src/grove.cc |only Rborist-0.3-7/Rborist/src/grove.h |only Rborist-0.3-7/Rborist/src/grovebridge.cc |only Rborist-0.3-7/Rborist/src/grovebridge.h |only Rborist-0.3-7/Rborist/src/idcount.h | 4 Rborist-0.3-7/Rborist/src/indexset.h | 42 + Rborist-0.3-7/Rborist/src/interlevel.cc | 4 Rborist-0.3-7/Rborist/src/interlevel.h | 16 Rborist-0.3-7/Rborist/src/leaf.cc | 91 ++- Rborist-0.3-7/Rborist/src/leaf.h | 52 +- Rborist-0.3-7/Rborist/src/leafR.cc | 64 -- Rborist-0.3-7/Rborist/src/leafR.h | 110 ---- Rborist-0.3-7/Rborist/src/leafbridge.cc | 84 --- Rborist-0.3-7/Rborist/src/leafbridge.h | 40 - Rborist-0.3-7/Rborist/src/nodescorer.cc |only Rborist-0.3-7/Rborist/src/nodescorer.h |only Rborist-0.3-7/Rborist/src/obs.h | 29 - Rborist-0.3-7/Rborist/src/obsfrontier.cc | 19 Rborist-0.3-7/Rborist/src/obsfrontier.h | 24 Rborist-0.3-7/Rborist/src/partition.h | 22 Rborist-0.3-7/Rborist/src/path.cc | 7 Rborist-0.3-7/Rborist/src/path.h | 54 +- Rborist-0.3-7/Rborist/src/predict.cc | 534 ++++++++------------ Rborist-0.3-7/Rborist/src/predict.h | 664 ++++++++------------------ Rborist-0.3-7/Rborist/src/predictR.cc | 456 +++++++---------- Rborist-0.3-7/Rborist/src/predictR.h | 145 +++-- Rborist-0.3-7/Rborist/src/predictRRf.cc |only Rborist-0.3-7/Rborist/src/predictbridge.cc | 193 +++---- Rborist-0.3-7/Rborist/src/predictbridge.h | 133 ++--- Rborist-0.3-7/Rborist/src/predictframe.cc |only Rborist-0.3-7/Rborist/src/predictframe.h |only Rborist-0.3-7/Rborist/src/prediction.cc |only Rborist-0.3-7/Rborist/src/prediction.h |only Rborist-0.3-7/Rborist/src/predictorframe.h | 26 - Rborist-0.3-7/Rborist/src/pretree.cc | 39 - Rborist-0.3-7/Rborist/src/pretree.h | 76 +- Rborist-0.3-7/Rborist/src/prng.h | 25 Rborist-0.3-7/Rborist/src/prngR.cc | 51 + Rborist-0.3-7/Rborist/src/quant.cc | 64 +- Rborist-0.3-7/Rborist/src/quant.h | 48 + Rborist-0.3-7/Rborist/src/rcppInit.cc | 2 Rborist-0.3-7/Rborist/src/resizeR.h | 4 Rborist-0.3-7/Rborist/src/response.cc | 112 ---- Rborist-0.3-7/Rborist/src/response.h | 122 ++-- Rborist-0.3-7/Rborist/src/rleframe.h | 28 - Rborist-0.3-7/Rborist/src/rleframeR.cc | 2 Rborist-0.3-7/Rborist/src/runaccum.cc | 4 Rborist-0.3-7/Rborist/src/runaccum.h | 8 Rborist-0.3-7/Rborist/src/runsig.h | 26 - Rborist-0.3-7/Rborist/src/sample.h | 111 +++- Rborist-0.3-7/Rborist/src/sampledobs.cc | 170 +++--- Rborist-0.3-7/Rborist/src/sampledobs.h | 213 +++++--- Rborist-0.3-7/Rborist/src/samplemap.cc |only Rborist-0.3-7/Rborist/src/samplemap.h | 9 Rborist-0.3-7/Rborist/src/samplenux.cc | 2 Rborist-0.3-7/Rborist/src/samplenux.h | 48 + Rborist-0.3-7/Rborist/src/sampler.cc | 237 ++++++--- Rborist-0.3-7/Rborist/src/sampler.h | 188 ++++--- Rborist-0.3-7/Rborist/src/samplerR.cc | 179 ++----- Rborist-0.3-7/Rborist/src/samplerR.h | 73 +- Rborist-0.3-7/Rborist/src/samplerbridge.cc | 79 ++- Rborist-0.3-7/Rborist/src/samplerbridge.h | 57 +- Rborist-0.3-7/Rborist/src/samplernux.cc |only Rborist-0.3-7/Rborist/src/samplernux.h | 22 Rborist-0.3-7/Rborist/src/scoredesc.cc |only Rborist-0.3-7/Rborist/src/scoredesc.h |only Rborist-0.3-7/Rborist/src/sfcart.h | 4 Rborist-0.3-7/Rborist/src/signatureR.cc | 21 Rborist-0.3-7/Rborist/src/signatureR.h | 32 - Rborist-0.3-7/Rborist/src/splitcart.cc | 6 Rborist-0.3-7/Rborist/src/splitcoord.h | 4 Rborist-0.3-7/Rborist/src/splitfrontier.cc | 33 - Rborist-0.3-7/Rborist/src/splitfrontier.h | 10 Rborist-0.3-7/Rborist/src/splitnux.h | 18 Rborist-0.3-7/Rborist/src/stagedcell.h | 14 Rborist-0.3-7/Rborist/src/sumcount.h | 8 Rborist-0.3-7/Rborist/src/trainR.cc | 157 ++++-- Rborist-0.3-7/Rborist/src/trainR.h | 100 ++- Rborist-0.3-7/Rborist/src/trainRRf.cc |only Rborist-0.3-7/Rborist/src/trainRRf.h |only Rborist-0.3-7/Rborist/src/trainbridge.cc | 92 +-- Rborist-0.3-7/Rborist/src/trainbridge.h | 89 ++- Rborist-0.3-7/Rborist/src/treenode.cc | 32 - Rborist-0.3-7/Rborist/src/treenode.h | 126 +--- Rborist-0.3-7/Rborist/src/typeparam.h | 25 164 files changed, 3743 insertions(+), 3944 deletions(-)
Title: Dataset from the Novel Forests of Singapore
Description: The raw dataset and model used in Lai et al. (2021)
Decoupled responses of native and exotic tree diversities to
distance from old-growth forest and soil phosphorous in
novel secondary forests. Applied Vegetation Science, 24, e12548.
Author: Hao Ran Lai [aut, cre] ,
Kwek Yan Chong [aut] ,
Alex Thiam Koon Yee [aut] ,
Germaine Su Yin Tan [ctb],
Louise Neo [ctb],
Carmen Yingxin Kee [ctb],
Hugh Tiang Wah Tan [ths]
Maintainer: Hao Ran Lai <hrlai.ecology@gmail.com>
Diff between novelforestSG versions 2.0.0 dated 2022-10-03 and 2.1.0 dated 2024-01-15
novelforestSG-2.0.0/novelforestSG/R/backtransform.R |only novelforestSG-2.0.0/novelforestSG/man/backtransform.Rd |only novelforestSG-2.1.0/novelforestSG/DESCRIPTION | 13 +- novelforestSG-2.1.0/novelforestSG/MD5 | 26 ++--- novelforestSG-2.1.0/novelforestSG/NAMESPACE | 1 novelforestSG-2.1.0/novelforestSG/NEWS.md | 6 + novelforestSG-2.1.0/novelforestSG/R/data.R | 57 +++++++++--- novelforestSG-2.1.0/novelforestSG/R/download_model.R | 2 novelforestSG-2.1.0/novelforestSG/R/novelforestSG-package.R | 2 novelforestSG-2.1.0/novelforestSG/README.md | 55 +++++------ novelforestSG-2.1.0/novelforestSG/data/novelforest_data.rda |binary novelforestSG-2.1.0/novelforestSG/inst/CITATION | 37 +++---- novelforestSG-2.1.0/novelforestSG/man/download_model.Rd | 2 novelforestSG-2.1.0/novelforestSG/man/novelforestSG.Rd | 2 novelforestSG-2.1.0/novelforestSG/man/novelforest_data.Rd | 50 ++++++++-- 15 files changed, 159 insertions(+), 94 deletions(-)
Title: Fast Algorithms for Fitting Topic Models and Non-Negative Matrix
Factorizations to Count Data
Description: Implements fast, scalable optimization algorithms for
fitting topic models ("grade of membership" models) and
non-negative matrix factorizations to count data. The methods
exploit the special relationship between the multinomial topic
model (also, "probabilistic latent semantic indexing") and Poisson
non-negative matrix factorization. The package provides tools to
compare, annotate and visualize model fits, including functions to
efficiently create "structure plots" and identify key features in
topics. The 'fastTopics' package is a successor to the 'CountClust'
package. Note that the 'fastTopicis' package on GitHub has more
vignettes illustrating application to single-cell RNA-seq data.
Author: Peter Carbonetto [aut, cre],
Kevin Luo [aut],
Kushal Dey [aut],
Joyce Hsiao [ctb],
Abhishek Sarkar [ctb],
Anthony Hung [ctb],
Xihui Lin [ctb],
Paul C. Boutros [ctb],
Minzhe Wang [ctb],
Tracy Ke [ctb],
Matthew Stephens [aut]
Maintainer: Peter Carbonetto <peter.carbonetto@gmail.com>
Diff between fastTopics versions 0.6-142 dated 2022-09-06 and 0.6-163 dated 2024-01-15
DESCRIPTION | 17 +++-- LICENSE | 2 MD5 | 58 ++++++++++--------- NAMESPACE | 3 - R/colors.R |only R/datasim.R | 2 R/de_analysis.R | 31 ++++++++-- R/fit_multinom_model.R | 2 R/fit_poisson_nmf.R | 2 R/fit_topic_model.R | 4 - R/init_poisson_nmf.R | 1 R/misc.R | 7 ++ R/pbmc_facs.R | 2 R/structure_plot.R | 22 +++++-- R/sysdata.rda |only R/verify_args.R | 4 + R/volcano_plots.R | 112 +++++++++++++++++++++++--------------- README.md | 49 +++++++++------- build/partial.rdb |binary inst/CITATION | 44 +++++++++++--- inst/doc/relationship.html | 18 ++++-- inst/doc/topics_vs_clusters.html | 18 ++++-- man/de_analysis.Rd | 16 +++-- man/fit_topic_model.Rd | 2 man/pbmc_facs.Rd | 7 ++ man/structure_plot.Rd | 7 -- man/volcano_plot.Rd | 35 +++++++---- src/Makevars | 1 src/Makevars.win | 1 tests/testthat/helper_functions.R | 15 +++-- tests/testthat/test_de_analysis.R | 72 +++++++++++++++++++----- 31 files changed, 366 insertions(+), 188 deletions(-)
Title: Convert Between R Objects and Geometric Structures
Description: Geometry shapes in 'R' are typically represented by matrices (points, lines), with more complex
shapes being lists of matrices (polygons). 'Geometries' will convert various 'R' objects into these shapes.
Conversion functions are available at both the 'R' level, and through 'Rcpp'.
Author: David Cooley [aut, cre]
Maintainer: David Cooley <david.cooley.au@gmail.com>
Diff between geometries versions 0.2.3 dated 2023-06-22 and 0.2.4 dated 2024-01-15
DESCRIPTION | 8 MD5 | 14 NEWS.md | 4 build/vignette.rds |binary inst/doc/geometries.R | 2 inst/doc/geometries.html | 526 +++++++++---------- inst/include/geometries/utils/unique/unique_sort.hpp | 15 inst/tinytest/test_unique.R | 6 8 files changed, 300 insertions(+), 275 deletions(-)
Title: Make, Update, and Query Binary Causal Models
Description: Users can declare binary causal models, update beliefs about causal types given data and calculate arbitrary estimands. Model definition makes use of 'dagitty' functionality. Updating is implemented in 'stan'. The approach used in 'CausalQueries' is a generalization of the 'biqq' models described in "Mixing Methods: A Bayesian Approach" (Humphreys and Jacobs, 2015, <DOI:10.1017/S0003055415000453>). The conceptual extension makes use of work on probabilistic causal models described in Pearl's Causality (Pearl, 2009, <DOI:10.1017/CBO9780511803161>).
Author: Clara Bicalho [ctb],
Jasper Cooper [ctb],
Macartan Humphreys [aut] ,
Till Tietz [aut, cre] ,
Alan Jacobs [aut],
Merlin Heidemanns [ctb],
Lily Medina [aut] ,
Julio Solis [ctb],
Georgiy Syunyaev [aut]
Maintainer: Till Tietz <ttietz2014@gmail.com>
Diff between CausalQueries versions 1.0.1 dated 2023-10-19 and 1.0.2 dated 2024-01-15
CausalQueries-1.0.1/CausalQueries/R/simulate_events.R |only CausalQueries-1.0.1/CausalQueries/man/includes_var.Rd |only CausalQueries-1.0.1/CausalQueries/man/is_improper.Rd |only CausalQueries-1.0.1/CausalQueries/man/strategy_statements.Rd |only CausalQueries-1.0.1/CausalQueries/man/var_in_query.Rd |only CausalQueries-1.0.1/CausalQueries/tests/testthat/test_set_confounds.R |only CausalQueries-1.0.1/CausalQueries/tests/testthat/test_simulate_data.R |only CausalQueries-1.0.2/CausalQueries/DESCRIPTION | 30 CausalQueries-1.0.2/CausalQueries/MD5 | 319 ++-- CausalQueries-1.0.2/CausalQueries/NAMESPACE | 1 CausalQueries-1.0.2/CausalQueries/NEWS.md | 63 CausalQueries-1.0.2/CausalQueries/R/CausalQueries-package.R | 3 CausalQueries-1.0.2/CausalQueries/R/clean_params.R | 15 CausalQueries-1.0.2/CausalQueries/R/data.R | 22 CausalQueries-1.0.2/CausalQueries/R/data_helpers.R | 278 ++- CausalQueries-1.0.2/CausalQueries/R/draw_causal_type.R | 3 CausalQueries-1.0.2/CausalQueries/R/get_ambiguities_matrix.R | 60 CausalQueries-1.0.2/CausalQueries/R/get_causal_types.R | 10 CausalQueries-1.0.2/CausalQueries/R/get_event_prob.R | 44 CausalQueries-1.0.2/CausalQueries/R/get_nodal_types.R | 194 +- CausalQueries-1.0.2/CausalQueries/R/get_parents.R | 4 CausalQueries-1.0.2/CausalQueries/R/get_query_types.R | 13 CausalQueries-1.0.2/CausalQueries/R/get_type_helpers.R | 31 CausalQueries-1.0.2/CausalQueries/R/get_type_prob.R | 32 CausalQueries-1.0.2/CausalQueries/R/helpers.R | 414 +++-- CausalQueries-1.0.2/CausalQueries/R/internal_inherit_params.R | 49 CausalQueries-1.0.2/CausalQueries/R/make_data.R | 230 ++ CausalQueries-1.0.2/CausalQueries/R/make_events.R |only CausalQueries-1.0.2/CausalQueries/R/make_models.R | 445 +++-- CausalQueries-1.0.2/CausalQueries/R/make_par_values.R | 793 ++++++---- CausalQueries-1.0.2/CausalQueries/R/map_query_to_causal_type.R | 103 - CausalQueries-1.0.2/CausalQueries/R/map_query_to_nodal_type.R | 247 +-- CausalQueries-1.0.2/CausalQueries/R/misc.R | 19 CausalQueries-1.0.2/CausalQueries/R/parmap.R | 118 - CausalQueries-1.0.2/CausalQueries/R/plot_dag.R | 75 CausalQueries-1.0.2/CausalQueries/R/prep_stan_data.R | 40 CausalQueries-1.0.2/CausalQueries/R/query_helpers.R | 179 +- CausalQueries-1.0.2/CausalQueries/R/query_model.R | 626 ++++--- CausalQueries-1.0.2/CausalQueries/R/realise_outcomes.R | 84 - CausalQueries-1.0.2/CausalQueries/R/set_confounds.R | 299 ++- CausalQueries-1.0.2/CausalQueries/R/set_parameter_matrix.R | 48 CausalQueries-1.0.2/CausalQueries/R/set_parameters.R | 113 + CausalQueries-1.0.2/CausalQueries/R/set_prior_distribution.R | 61 CausalQueries-1.0.2/CausalQueries/R/set_priors.R | 123 + CausalQueries-1.0.2/CausalQueries/R/set_restrictions.R | 394 +++- CausalQueries-1.0.2/CausalQueries/R/update_model.R | 122 - CausalQueries-1.0.2/CausalQueries/README.md | 6 CausalQueries-1.0.2/CausalQueries/build |only CausalQueries-1.0.2/CausalQueries/inst/doc |only CausalQueries-1.0.2/CausalQueries/inst/stan/simplexes.stan | 2 CausalQueries-1.0.2/CausalQueries/man/CausalQueries-package.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/CausalQueries_internal_inherit_params.Rd | 36 CausalQueries-1.0.2/CausalQueries/man/add_dots.Rd | 9 CausalQueries-1.0.2/CausalQueries/man/add_wildcard.Rd | 6 CausalQueries-1.0.2/CausalQueries/man/all_data_types.Rd | 23 CausalQueries-1.0.2/CausalQueries/man/causal_type_names.Rd | 6 CausalQueries-1.0.2/CausalQueries/man/clean_condition.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/clean_param_vector.Rd | 7 CausalQueries-1.0.2/CausalQueries/man/clean_params.Rd | 15 CausalQueries-1.0.2/CausalQueries/man/collapse_data.Rd | 28 CausalQueries-1.0.2/CausalQueries/man/collapse_nodal_types.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/construct_commands_alter_at.Rd |only CausalQueries-1.0.2/CausalQueries/man/construct_commands_other_args.Rd |only CausalQueries-1.0.2/CausalQueries/man/construct_commands_param_names.Rd |only CausalQueries-1.0.2/CausalQueries/man/data_type_names.Rd | 6 CausalQueries-1.0.2/CausalQueries/man/default_stan_control.Rd | 6 CausalQueries-1.0.2/CausalQueries/man/democracy_data.Rd | 6 CausalQueries-1.0.2/CausalQueries/man/draw_causal_type.Rd | 6 CausalQueries-1.0.2/CausalQueries/man/drop_empty_families.Rd | 13 CausalQueries-1.0.2/CausalQueries/man/expand_data.Rd | 7 CausalQueries-1.0.2/CausalQueries/man/expand_nodal_expression.Rd | 10 CausalQueries-1.0.2/CausalQueries/man/expand_wildcard.Rd | 7 CausalQueries-1.0.2/CausalQueries/man/get_ambiguities_matrix.Rd | 11 CausalQueries-1.0.2/CausalQueries/man/get_causal_types.Rd | 6 CausalQueries-1.0.2/CausalQueries/man/get_data_families.Rd | 15 CausalQueries-1.0.2/CausalQueries/man/get_event_prob.Rd | 17 CausalQueries-1.0.2/CausalQueries/man/get_nodal_types.Rd | 11 CausalQueries-1.0.2/CausalQueries/man/get_param_dist.Rd | 9 CausalQueries-1.0.2/CausalQueries/man/get_parameter_matrix.Rd | 7 CausalQueries-1.0.2/CausalQueries/man/get_parameter_names.Rd | 10 CausalQueries-1.0.2/CausalQueries/man/get_parents.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/get_parmap.Rd | 9 CausalQueries-1.0.2/CausalQueries/man/get_prior_distribution.Rd | 13 CausalQueries-1.0.2/CausalQueries/man/get_query_types.Rd | 22 CausalQueries-1.0.2/CausalQueries/man/get_type_prob.Rd | 16 CausalQueries-1.0.2/CausalQueries/man/get_type_prob_multiple.Rd | 19 CausalQueries-1.0.2/CausalQueries/man/gsub_many.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/institutions_data.Rd | 6 CausalQueries-1.0.2/CausalQueries/man/interpret_type.Rd | 27 CausalQueries-1.0.2/CausalQueries/man/is_a_model.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/lipids_data.Rd | 10 CausalQueries-1.0.2/CausalQueries/man/list_non_parents.Rd | 6 CausalQueries-1.0.2/CausalQueries/man/make_ambiguities_matrix.Rd | 9 CausalQueries-1.0.2/CausalQueries/man/make_data.Rd | 47 CausalQueries-1.0.2/CausalQueries/man/make_data_single.Rd | 27 CausalQueries-1.0.2/CausalQueries/man/make_events.Rd | 40 CausalQueries-1.0.2/CausalQueries/man/make_model.Rd | 39 CausalQueries-1.0.2/CausalQueries/man/make_nodal_types.Rd | 6 CausalQueries-1.0.2/CausalQueries/man/make_par_values.Rd | 53 CausalQueries-1.0.2/CausalQueries/man/make_par_values_stops.Rd |only CausalQueries-1.0.2/CausalQueries/man/make_parameter_matrix.Rd | 10 CausalQueries-1.0.2/CausalQueries/man/make_parmap.Rd | 26 CausalQueries-1.0.2/CausalQueries/man/make_prior_distribution.Rd | 9 CausalQueries-1.0.2/CausalQueries/man/minimal_data.Rd | 6 CausalQueries-1.0.2/CausalQueries/man/minimal_event_data.Rd | 7 CausalQueries-1.0.2/CausalQueries/man/nodes_in_statement.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/observe_data.Rd | 11 CausalQueries-1.0.2/CausalQueries/man/parameter_setting.Rd | 36 CausalQueries-1.0.2/CausalQueries/man/parents_to_int.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/perm.Rd | 4 CausalQueries-1.0.2/CausalQueries/man/plot_dag.Rd | 13 CausalQueries-1.0.2/CausalQueries/man/prep_stan_data.Rd | 9 CausalQueries-1.0.2/CausalQueries/man/prior_setting.Rd | 82 - CausalQueries-1.0.2/CausalQueries/man/queries_to_types.Rd | 9 CausalQueries-1.0.2/CausalQueries/man/query_distribution.Rd | 60 CausalQueries-1.0.2/CausalQueries/man/query_model.Rd | 57 CausalQueries-1.0.2/CausalQueries/man/query_to_expression.Rd | 4 CausalQueries-1.0.2/CausalQueries/man/realise_outcomes.Rd | 32 CausalQueries-1.0.2/CausalQueries/man/restrict_by_labels.Rd | 19 CausalQueries-1.0.2/CausalQueries/man/restrict_by_query.Rd | 23 CausalQueries-1.0.2/CausalQueries/man/reveal_outcomes.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/set_ambiguities_matrix.Rd | 9 CausalQueries-1.0.2/CausalQueries/man/set_confound.Rd | 50 CausalQueries-1.0.2/CausalQueries/man/set_parameter_matrix.Rd | 12 CausalQueries-1.0.2/CausalQueries/man/set_parmap.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/set_prior_distribution.Rd | 13 CausalQueries-1.0.2/CausalQueries/man/set_restrictions.Rd | 79 CausalQueries-1.0.2/CausalQueries/man/set_sampling_args.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/st_within.Rd | 13 CausalQueries-1.0.2/CausalQueries/man/substitutes.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/te.Rd | 5 CausalQueries-1.0.2/CausalQueries/man/type_matrix.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/uncollapse_nodal_types.Rd |only CausalQueries-1.0.2/CausalQueries/man/unpack_wildcard.Rd | 3 CausalQueries-1.0.2/CausalQueries/man/update_causal_types.Rd | 6 CausalQueries-1.0.2/CausalQueries/man/update_model.Rd | 40 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_clean_params.R | 28 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_data_helpers.R | 267 +-- CausalQueries-1.0.2/CausalQueries/tests/testthat/test_data_strategy.R | 110 - CausalQueries-1.0.2/CausalQueries/tests/testthat/test_get_event_prob.R | 50 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_get_nodal_types.R | 64 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_get_query_types.R | 10 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_get_type_prob.R | 95 - CausalQueries-1.0.2/CausalQueries/tests/testthat/test_get_types.R | 11 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_helpers.R | 88 - CausalQueries-1.0.2/CausalQueries/tests/testthat/test_layering.R | 33 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_make_data.R | 35 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_make_events.R |only CausalQueries-1.0.2/CausalQueries/tests/testthat/test_make_model.R | 51 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_make_par_values.R | 430 +++++ CausalQueries-1.0.2/CausalQueries/tests/testthat/test_misc.R | 6 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_observe.R | 14 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_parmap.R |only CausalQueries-1.0.2/CausalQueries/tests/testthat/test_plot_dag.R | 79 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_query_helpers.R | 22 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_query_model.R | 157 + CausalQueries-1.0.2/CausalQueries/tests/testthat/test_restrictions.R | 19 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_reveal_outcomes.R | 29 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_set_confound.R |only CausalQueries-1.0.2/CausalQueries/tests/testthat/test_set_parameter_matrix.R | 13 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_set_parameters.R | 28 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_set_prior_distribution.R | 12 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_set_priors.R | 127 + CausalQueries-1.0.2/CausalQueries/tests/testthat/test_set_restrictions.R | 51 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_type_helpers.R | 6 CausalQueries-1.0.2/CausalQueries/tests/testthat/test_update_model.R | 84 - CausalQueries-1.0.2/CausalQueries/vignettes |only 167 files changed, 5890 insertions(+), 3053 deletions(-)
Title: Programming with Big Data -- Interface to 'ZeroMQ'
Description: 'ZeroMQ' is a well-known library for high-performance
asynchronous messaging in scalable, distributed applications. This
package provides high level R wrapper functions to easily utilize
'ZeroMQ'. We mainly focus on interactive client/server programming
frameworks. For convenience, a minimal 'ZeroMQ' library (4.2.2)
is shipped with 'pbdZMQ', which can be used if no system installation
of 'ZeroMQ' is available. A few wrapper functions compatible with
'rzmq' are also provided.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Christian Heckendorf [aut] ,
George Ostrouchov [aut] ,
Whit Armstrong [ctb] ,
Brian Ripley [ctb] ,
R Core team [ctb] ,
Philipp A. [ctb] ,
Elliott Sales de Andrade [ctb] ,
Spencer Aiello [ctb] ,
Paul Andre [...truncated...]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdZMQ versions 0.3-10 dated 2023-09-05 and 0.3-11 dated 2024-01-15
ChangeLog | 5 ++++ DESCRIPTION | 10 +++++---- MD5 | 45 +++++++++++++++++++++---------------------- README.md | 3 +- man/a0_a_pbdZMQ-package.Rd | 2 - man/a0_b_control.Rd | 2 - man/a0_b_pbd_opt.Rd | 2 - man/a0_c_options.Rd | 2 - man/a0_d_context.Rd | 2 - man/a1_socket.Rd | 2 - man/a2_message.Rd | 2 - man/b0_sendrecv.Rd | 2 - man/b1_sendrecvfile.Rd | 2 - man/b2_sendrecv_multipart.Rd | 2 - man/b2_sendrecvdir.Rd | 2 - man/b3_poll.Rd | 2 - man/xx_czmq_wrapper.Rd | 2 - man/xx_rzmq_wrapper.Rd | 2 - man/xx_utility.Rd | 2 - man/zz_zmq_control.Rd | 2 - man/zz_zmq_flags.Rd | 2 - src/Makevars.in | 2 - src/Makevars.win | 3 +- src/R_cxx_dummy.cc |only 24 files changed, 56 insertions(+), 46 deletions(-)
Title: Simulation of Matrix Population Models with Defined Life History
Characteristics
Description: Allows users to simulate matrix population models with
particular characteristics based on aspects of life history such as
mortality trajectories and fertility trajectories. Also allows the
exploration of sampling error due to small sample size.
Author: Owen Jones [aut, cre]
Maintainer: Owen Jones <jones@biology.sdu.dk>
Diff between mpmsim versions 1.1.0 dated 2023-09-29 and 2.0.0 dated 2024-01-15
DESCRIPTION | 8 ++-- MD5 | 22 ++++++------- NAMESPACE | 2 - NEWS.md | 4 ++ R/random_mpm.R | 72 ++++++++++++++++++++++++++++++++++--------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/age_from_stage.R | 8 ++-- inst/doc/age_from_stage.html | 4 +- inst/doc/error_propagation.R | 6 +-- inst/doc/pca.R | 6 +-- inst/doc/pca.html | 6 +-- 12 files changed, 92 insertions(+), 46 deletions(-)
Title: Visualization and Tools for Ichimoku Kinko Hyo Strategies
Description: An implementation of 'Ichimoku Kinko Hyo', also commonly known as
'cloud charts'. Static and interactive visualizations with tools for
creating, backtesting and development of quantitative 'ichimoku' strategies.
As described in Sasaki (1996, ISBN:4925152009), the technique is a refinement
on candlestick charting, originating from Japan and now in widespread use in
technical analysis worldwide. Translating as 'one-glance equilibrium chart',
it allows the price action and market structure of financial securities to
be determined 'at-a-glance'. Incorporates an interface with the OANDA
fxTrade API <https://developer.oanda.com/> for retrieving historical and
live streaming price data for major currencies, metals, commodities,
government bonds and stock indices.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between ichimoku versions 1.4.12 dated 2023-12-15 and 1.4.13 dated 2024-01-15
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 8 ++++++++ R/data.R | 4 ++-- R/ichimoku-package.R | 4 ++-- R/oanda.R | 20 ++++++++++---------- R/switch.R | 13 +++++++------ inst/CITATION | 2 +- src/shikokuchuo.c | 27 +++++++++++++++------------ 9 files changed, 57 insertions(+), 45 deletions(-)
Title: Data and Functions for R Companion to Political Analysis 3rd Ed
Description: Bundles the datasets and functions featured in Philip H.
Pollock and Barry C. Edwards<https://edge.sagepub.com/pollock>, "An R Companion to Political Analysis, 3rd Edition," Thousand Oaks, CA: Sage Publications.
Author: Barry Edwards [aut, cre],
Philip Pollock [aut]
Maintainer: Barry Edwards <barry.edwards@ucf.edu>
Diff between RCPA3 versions 1.1.1 dated 2022-02-16 and 1.2.1 dated 2024-01-15
DESCRIPTION | 10 ++--- MD5 | 90 +++++++++++++++++++++++++-------------------------- NEWS.md | 10 +++++ R/CImean.r | 3 + R/CIprop.r | 3 + R/boxplotC.r | 3 + R/compmeansC.r | 6 +++ R/correlateC.r | 3 + R/crosstabC.r | 10 ++++- R/describeC.r | 3 + R/freqC.r | 3 + R/getC.r | 3 + R/helper.functions.r | 3 - R/histC.r | 7 ++- R/logregC.r | 3 + R/printC.r | 40 +++++++++++----------- R/random.names.r | 2 + R/regC.r | 5 ++ R/sampdistC.r | 3 + R/sortC.r | 3 + R/testmeansC.r | 3 + R/testpropsC.r | 3 + R/transformC.r | 3 + R/welcome.r | 2 + R/widgetFactory.r | 2 + man/CImean.Rd | 8 ++++ man/CIprop.Rd | 8 ++++ man/boxplotC.Rd | 8 ++++ man/compmeansC.Rd | 11 ++++++ man/correlateC.Rd | 8 ++++ man/crosstabC.Rd | 13 ++++++- man/describeC.Rd | 8 ++++ man/freqC.Rd | 8 ++++ man/getC.Rd | 8 ++++ man/histC.Rd | 8 ++++ man/logregC.Rd | 8 ++++ man/printC.Rd | 7 +++ man/random.names.Rd | 5 ++ man/regC.Rd | 10 +++++ man/sampdistC.Rd | 8 ++++ man/sortC.Rd | 8 ++++ man/testmeansC.Rd | 8 ++++ man/testpropsC.Rd | 8 ++++ man/transformC.Rd | 8 ++++ man/welcome.Rd | 7 +++ man/widgetFactory.Rd | 7 +++ 46 files changed, 320 insertions(+), 78 deletions(-)
Title: Tools to Accompany the 'psych' Package for Psychological
Research
Description: Support functions, data sets, and vignettes for the 'psych' package. Contains several of the biggest data sets for the 'psych' package as well as four vignettes. A few helper functions for file manipulation are included as well. For more information, see the <https://personality-project.org/r/> web page.
Author: William Revelle [aut, cre]
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psychTools versions 2.3.12 dated 2023-12-20 and 2.4.1 dated 2024-01-15
DESCRIPTION | 8 ++-- MD5 | 33 +++++++++++-------- NAMESPACE | 2 - R/rd2html.R | 59 ++++++++++++++++++++++------------- R/utlilites.r | 1 build/vignette.rds |binary inst/CITATION | 4 +- inst/NEWS.Rd | 26 ++++++++++----- inst/doc/factor.pdf |binary inst/doc/intro.R |only inst/doc/intro.Rnw |only inst/doc/intro.pdf |only inst/doc/mediation.R | 28 +++++++++------- inst/doc/mediation.pdf |binary inst/doc/mediation.rnw | 80 +++++++++++++++++++++++++----------------------- inst/doc/omega.pdf |binary inst/doc/overview.pdf |binary man/rd2html.Rd |only vignettes/intro.Rnw |only vignettes/mediation.rnw | 80 +++++++++++++++++++++++++----------------------- 20 files changed, 181 insertions(+), 140 deletions(-)
Title: Get the Same, Personal, Free 'TCP' Port over and over
Description: An R implementation of the cross-platform, language-independent "port4me" algorithm (<https://github.com/HenrikBengtsson/port4me>), which (1) finds a free Transmission Control Protocol ('TCP') port in [1024,65535] that the user can open, (2) is designed to work in multi-user environments, (3), gives different users, different ports, (4) gives the user the same port over time with high probability, (5) gives different ports for different software tools, and (6) requires no configuration.
Author: Henrik Bengtsson [aut, cre, cph]
,
Jeroen Ooms [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between port4me versions 0.6.0 dated 2023-07-14 and 0.7.0 dated 2024-01-15
port4me-0.6.0/port4me/R/can_port_be_opened.R |only port4me-0.7.0/port4me/DESCRIPTION | 25 + port4me-0.7.0/port4me/MD5 | 45 ++- port4me-0.7.0/port4me/NAMESPACE | 3 port4me-0.7.0/port4me/NEWS.md | 24 + port4me-0.7.0/port4me/R/cli.R | 89 +++--- port4me-0.7.0/port4me/R/is_tcp_port_available.R |only port4me-0.7.0/port4me/R/lcg.R | 68 +++-- port4me-0.7.0/port4me/R/port4me.R | 32 +- port4me-0.7.0/port4me/R/zzz.R |only port4me-0.7.0/port4me/README.md | 14 - port4me-0.7.0/port4me/build/vignette.rds |binary port4me-0.7.0/port4me/inst/WORDLIST | 1 port4me-0.7.0/port4me/inst/doc/port4me-overview.R | 11 port4me-0.7.0/port4me/inst/doc/port4me-overview.Rmd | 7 port4me-0.7.0/port4me/inst/doc/port4me-overview.html | 10 port4me-0.7.0/port4me/src |only port4me-0.7.0/port4me/tests/cli.R |only port4me-0.7.0/port4me/tests/incl |only port4me-0.7.0/port4me/tests/lcg-uniformity.R |only port4me-0.7.0/port4me/tests/lcg.R | 40 +++ port4me-0.7.0/port4me/tests/odds-and-ends.R |only port4me-0.7.0/port4me/tests/port4me,list.R |only port4me-0.7.0/port4me/tests/port4me-uniformity.R |only port4me-0.7.0/port4me/tests/port4me.R | 168 +++++++----- port4me-0.7.0/port4me/tests/port4me.bats | 248 ++++++++++++++++--- port4me-0.7.0/port4me/vignettes/port4me-overview.Rmd | 7 27 files changed, 565 insertions(+), 227 deletions(-)
Title: Make Working with Environment Variables Easier and More
Consistent
Description: A collection of functions that allows for easy and consistent use
of environment variables. This includes setting, checking, retrieving,
transforming, and validating values stored in environment variables.
Author: Brian Connelly [aut, cre, cph]
Maintainer: Brian Connelly <bdc@bconnelly.net>
Diff between envvar versions 0.1.0 dated 2023-10-25 and 0.1.1 dated 2024-01-15
DESCRIPTION | 6 +++--- MD5 | 34 +++++++++++++++++----------------- NEWS.md | 6 ++++++ R/envvar_get.R | 15 +++++++++++---- R/envvar_get_list.R | 16 +++++++++++----- R/files.R | 14 ++++++++++---- R/network.R | 12 ++++++++---- R/types.R | 32 ++++++++++++++++++++++---------- R/uuid.R | 6 ++++-- README.md | 2 ++ man/envvar_get.Rd | 20 ++++++++++++++++++-- man/files.Rd | 9 +++++++++ man/list.Rd | 16 +++++++++++++--- man/network.Rd | 7 +++++-- man/types.Rd | 21 +++++++++++++++------ man/uuid.Rd | 5 ++++- tests/testthat/test-envvar_get.R | 3 +++ tests/testthat/test-files.R | 26 ++++++++++++++++++++++++++ 18 files changed, 187 insertions(+), 63 deletions(-)
Title: Spatial Modeling on Stream Networks
Description: Spatial statistical modeling and prediction for data on stream networks, including models based on in-stream distance (Ver Hoef, J.M. and Peterson, E.E., (2010) <DOI:10.1198/jasa.2009.ap08248>.) Models are created using moving average constructions. Spatial linear models, including explanatory variables, can be fit with (restricted) maximum likelihood. Mapping and other graphical functions are included.
Author: Michael Dumelle [aut, cre] ,
Jay M. Ver Hoef [aut],
Erin Peterson [aut],
Alan Pearse [ctb],
Dan Isaak [ctb]
Maintainer: Michael Dumelle <Dumelle.Michael@epa.gov>
Diff between SSN2 versions 0.1.0 dated 2023-11-08 and 0.1.1 dated 2024-01-15
SSN2-0.1.0/SSN2/man/ssn_get_netgeometry.Rd |only SSN2-0.1.1/SSN2/DESCRIPTION | 6 SSN2-0.1.1/SSN2/MD5 | 116 - SSN2-0.1.1/SSN2/NAMESPACE | 2 SSN2-0.1.1/SSN2/NEWS.md | 20 SSN2-0.1.1/SSN2/R/SSN2.R | 42 SSN2-0.1.1/SSN2/R/SSN_to_SSN2.R | 539 +++---- SSN2-0.1.1/SSN2/R/Torgegram.R | 10 SSN2-0.1.1/SSN2/R/amongSitesDistMat.R | 134 - SSN2-0.1.1/SSN2/R/augment.R | 544 +++---- SSN2-0.1.1/SSN2/R/cov_initial_search_glm.R | 15 SSN2-0.1.1/SSN2/R/cov_matrix.R | 610 ++++---- SSN2-0.1.1/SSN2/R/cov_vector.R | 527 +++--- SSN2-0.1.1/SSN2/R/createBinaryID.R | 120 - SSN2-0.1.1/SSN2/R/create_netgeometry.R | 10 SSN2-0.1.1/SSN2/R/data.R | 258 +-- SSN2-0.1.1/SSN2/R/get_data_object.R | 2 SSN2-0.1.1/SSN2/R/get_data_object_glm.R | 2 SSN2-0.1.1/SSN2/R/get_dist_object.R | 8 SSN2-0.1.1/SSN2/R/get_dist_pred_object.R | 16 SSN2-0.1.1/SSN2/R/get_dist_predbk_object.R | 8 SSN2-0.1.1/SSN2/R/glance.R | 122 - SSN2-0.1.1/SSN2/R/initial.R | 566 +++---- SSN2-0.1.1/SSN2/R/laploglik_products.R | 7 SSN2-0.1.1/SSN2/R/names.SSN.R | 62 SSN2-0.1.1/SSN2/R/plot.R | 549 +++---- SSN2-0.1.1/SSN2/R/predict.R | 930 ++++++------ SSN2-0.1.1/SSN2/R/predict_glm.R | 754 ++++----- SSN2-0.1.1/SSN2/R/print.R | 6 SSN2-0.1.1/SSN2/R/print.SSN.R | 74 SSN2-0.1.1/SSN2/R/ssn_create_distmat.R | 1030 ++++++------- SSN2-0.1.1/SSN2/R/ssn_get_netgeometry.R | 24 SSN2-0.1.1/SSN2/R/ssn_get_stream_distmat.R | 332 ++-- SSN2-0.1.1/SSN2/R/ssn_glm.R | 9 SSN2-0.1.1/SSN2/R/ssn_import.R | 726 ++++----- SSN2-0.1.1/SSN2/R/ssn_import_predpts.R | 380 ++-- SSN2-0.1.1/SSN2/R/ssn_lm.R | 794 +++++----- SSN2-0.1.1/SSN2/R/ssn_put_data.R | 4 SSN2-0.1.1/SSN2/R/ssn_rnorm.R | 2 SSN2-0.1.1/SSN2/R/ssn_simulate.R | 234 +-- SSN2-0.1.1/SSN2/R/ssn_split_predpts.R | 670 ++++---- SSN2-0.1.1/SSN2/R/ssn_subset.R | 576 +++---- SSN2-0.1.1/SSN2/R/ssn_update_path.R | 90 - SSN2-0.1.1/SSN2/R/ssn_write.R | 266 +-- SSN2-0.1.1/SSN2/R/tidy.R | 596 +++---- SSN2-0.1.1/SSN2/R/use_laploglik.R | 1 SSN2-0.1.1/SSN2/R/utils.R | 134 - SSN2-0.1.1/SSN2/README.md | 294 ++- SSN2-0.1.1/SSN2/data/mf04p.rda |binary SSN2-0.1.1/SSN2/inst/doc/introduction.R | 32 SSN2-0.1.1/SSN2/inst/doc/introduction.Rmd | 1599 ++++++++++----------- SSN2-0.1.1/SSN2/inst/doc/introduction.html | 270 +-- SSN2-0.1.1/SSN2/inst/references.bib | 974 ++++++------ SSN2-0.1.1/SSN2/man/ssn_get_netgeom.Rd |only SSN2-0.1.1/SSN2/man/ssn_glm.Rd | 6 SSN2-0.1.1/SSN2/man/ssn_import.Rd | 12 SSN2-0.1.1/SSN2/tests/testthat/test-dist_objects.R | 276 +-- SSN2-0.1.1/SSN2/tests/testthat/test-predict.R | 100 - SSN2-0.1.1/SSN2/tests/testthat/test-ssn-object.R | 82 - SSN2-0.1.1/SSN2/vignettes/introduction.Rmd | 1599 ++++++++++----------- 60 files changed, 8683 insertions(+), 8488 deletions(-)
Title: Load Data from Facebook API Marketing
Description: Load data by campaigns, ads, ad sets and insights, ad account and business manager
from Facebook Marketing API into R. For more details see official documents by Facebook
Marketing API <https://developers.facebook.com/docs/marketing-apis/>.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rfacebookstat versions 2.9.3 dated 2023-05-16 and 2.9.9 dated 2024-01-15
DESCRIPTION | 8 - MD5 | 30 ++-- NEWS.md | 27 +++ R/authorization.R | 2 R/fbGetAdAccounts.R | 2 R/zzz.R | 2 README.md | 2 build/partial.rdb |binary inst/doc/rfacebookstat-authorization.html | 46 +++--- inst/doc/rfacebookstat-cost-data.html | 90 ++++++------ inst/doc/rfacebookstat-get-statistics.Rmd | 2 inst/doc/rfacebookstat-get-statistics.html | 208 ++++++++++++++--------------- man/fbAuth.Rd | 2 man/fbGetMarketingStat.Rd | 4 man/fbGetToken.Rd | 2 vignettes/rfacebookstat-get-statistics.Rmd | 2 16 files changed, 227 insertions(+), 202 deletions(-)
Title: Utilities to Weave Hydrologic Fabrics
Description: A collection of utilities that support creation of network attributes for hydrologic networks. Methods and algorithms implemented are documented in Moore et al. (2019) <doi:10.3133/ofr20191096>), Cormen and Leiserson (2022) <ISBN:9780262046305> and Verdin and Verdin (1999) <doi:10.1016/S0022-1694(99)00011-6>.
Author: David Blodgett [aut, cre]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between hydroloom versions 1.0.1 dated 2024-01-09 and 1.0.2 dated 2024-01-15
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 2 +- R/disambiguate.R | 2 ++ R/get_hydro_location.R | 3 ++- R/index_points_to_lines.R | 3 ++- inst/doc/advanced_network.html | 2 +- inst/doc/flow-table.html | 4 ++-- man/disambiguate_indexes.Rd | 2 ++ man/get_hydro_location.Rd | 3 ++- man/index_points_to_lines.Rd | 3 ++- tests/testthat/test_index.R | 5 +++++ 12 files changed, 35 insertions(+), 22 deletions(-)
Title: A Simulation Framework for Spatiotemporal Population Genetics
Description: A framework for simulating spatially explicit genomic data which
leverages real cartographic information for programmatic and visual encoding
of spatiotemporal population dynamics on real geographic landscapes. Population
genetic models are then automatically executed by the 'SLiM' software by Haller
et al. (2019) <doi:10.1093/molbev/msy228> behind the scenes, using a custom
built-in simulation 'SLiM' script. Additionally, fully abstract spatial models
not tied to a specific geographic location are supported, and users can also
simulate data from standard, non-spatial, random-mating models. These can be
simulated either with the 'SLiM' built-in back-end script, or using an efficient
coalescent population genetics simulator 'msprime' by Baumdicker et al. (2022)
<doi:10.1093/genetics/iyab229> with a custom-built 'Python' script bundled with the
R package. Simulated genomic data is saved in a tree-sequence format and can be
loaded, manipulated, and summarised using tree-sequen [...truncated...]
Author: Martin Petr [aut, cre]
Maintainer: Martin Petr <contact@bodkan.net>
Diff between slendr versions 0.8.0 dated 2023-12-07 and 0.8.1 dated 2024-01-15
DESCRIPTION | 6 - MD5 | 100 +++++++++++------------ NEWS.md | 8 + R/compilation.R | 2 R/interface.R | 2 R/tspop.R | 25 +++-- R/utils.R | 40 ++++++--- R/visualization.R | 121 ---------------------------- README.md | 23 ++++- inst/doc/vignette-01-tutorial.R | 2 inst/doc/vignette-01-tutorial.Rmd | 2 inst/doc/vignette-01-tutorial.html | 24 ++--- inst/doc/vignette-02-grid-model.R | 2 inst/doc/vignette-02-grid-model.Rmd | 2 inst/doc/vignette-02-grid-model.html | 18 ++-- inst/doc/vignette-03-interactions.R | 2 inst/doc/vignette-03-interactions.Rmd | 2 inst/doc/vignette-03-interactions.html | 4 inst/doc/vignette-04-nonspatial-models.R | 2 inst/doc/vignette-04-nonspatial-models.Rmd | 2 inst/doc/vignette-04-nonspatial-models.html | 2 inst/doc/vignette-05-tree-sequences.R | 2 inst/doc/vignette-05-tree-sequences.Rmd | 2 inst/doc/vignette-05-tree-sequences.html | 14 +-- inst/doc/vignette-06-locations.R | 2 inst/doc/vignette-06-locations.Rmd | 2 inst/doc/vignette-06-locations.html | 16 +-- inst/doc/vignette-07-backends.R | 2 inst/doc/vignette-07-backends.Rmd | 2 inst/doc/vignette-07-backends.html | 12 +- inst/doc/vignette-08-nonslendr-tskit.R | 2 inst/doc/vignette-08-nonslendr-tskit.Rmd | 2 inst/doc/vignette-08-nonslendr-tskit.html | 10 +- inst/doc/vignette-09-paper.R | 2 inst/doc/vignette-09-paper.Rmd | 2 inst/doc/vignette-09-paper.html | 14 +-- inst/doc/vignette-10-tracts.R | 8 - inst/doc/vignette-10-tracts.Rmd | 8 - inst/doc/vignette-10-tracts.html | 8 - man/ts_tracts.Rd | 25 +++-- tests/testthat/test-tspop.R | 2 vignettes/vignette-01-tutorial.Rmd | 2 vignettes/vignette-02-grid-model.Rmd | 2 vignettes/vignette-03-interactions.Rmd | 2 vignettes/vignette-04-nonspatial-models.Rmd | 2 vignettes/vignette-05-tree-sequences.Rmd | 2 vignettes/vignette-06-locations.Rmd | 2 vignettes/vignette-07-backends.Rmd | 2 vignettes/vignette-08-nonslendr-tskit.Rmd | 2 vignettes/vignette-09-paper.Rmd | 2 vignettes/vignette-10-tracts.Rmd | 8 - 51 files changed, 241 insertions(+), 313 deletions(-)
Title: R Parser for the ITCH-Protocol
Description: Allows to efficiently parse, filter, and write binary ITCH Files (Version 5.0) containing detailed financial transactions as distributed by NASDAQ to an R data.table.
Author: David Zimmermann-Kollenda [aut, cre]
Maintainer: David Zimmermann-Kollenda <david_j_zimmermann@hotmail.com>
Diff between RITCH versions 0.1.25 dated 2024-01-13 and 0.1.26 dated 2024-01-15
DESCRIPTION | 6 ++--- MD5 | 20 ++++++++-------- NEWS.md | 4 +++ R/count_functions.R | 7 +++-- R/filter_itch.R | 5 ++-- R/gz_functions.R | 43 ++++++++++++++++++------------------ R/read_functions.R | 10 +++++--- inst/tinytest/test_filter_itch.R | 35 +++++++++++++++-------------- inst/tinytest/test_read_functions.R | 5 ++-- man/count_functions.Rd | 4 +++ man/read_functions.Rd | 4 +++ 11 files changed, 81 insertions(+), 62 deletions(-)
Title: Multiple Precision Arithmetic
Description: Multiple Precision Arithmetic (big integers and rationals,
prime number tests, matrix computation), "arithmetic without limitations"
using the C library GMP (GNU Multiple Precision Arithmetic).
Author: Antoine Lucas, Immanuel Scholz, Rainer Boehme <rb-gmp@reflex-studio.de>,
Sylvain Jasson <Sylvain.Jasson@inrae.fr>,
Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Antoine Lucas <antoinelucas@gmail.com>
Diff between gmp versions 0.7-3 dated 2023-11-28 and 0.7-4 dated 2024-01-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/bigmod.cc | 14 +++++++------- src/matrix.cc | 8 +++----- src/matrixq.cc | 6 +++--- 5 files changed, 21 insertions(+), 23 deletions(-)
Title: Predicted Values and Discrete Changes for Regression Models
Description: Functions to calculate predicted values and the difference between
the two cases with confidence interval for lm() [linear model], glm() [generalized linear model], glm.nb() [negative binomial model],
polr() [ordinal logistic model], vglm() [generalized ordinal logistic model], multinom() [multinomial model], tobit() [tobit model],
svyglm() [survey-weighted generalised linear models] and lmer() [linear multilevel models] using Monte Carlo simulations or bootstrap. Reference: Bennet A. Zelner (2009) <doi:10.1002/smj.783>.
Author: Benjamin E. Schlegel [aut,cre]
Maintainer: Benjamin E. Schlegel <kontakt@benjaminschlegel.ch>
Diff between glm.predict versions 4.2-0 dated 2022-12-02 and 4.3-0 dated 2024-01-15
glm.predict-4.2-0/glm.predict/inst/doc/predicts.R |only glm.predict-4.2-0/glm.predict/inst/doc/predicts.Rmd |only glm.predict-4.2-0/glm.predict/inst/doc/predicts.html |only glm.predict-4.2-0/glm.predict/vignettes/predicts.Rmd |only glm.predict-4.3-0/glm.predict/DESCRIPTION | 29 +++++++-------- glm.predict-4.3-0/glm.predict/MD5 | 30 ++++++++++------ glm.predict-4.3-0/glm.predict/NAMESPACE | 4 +- glm.predict-4.3-0/glm.predict/NEWS.md |only glm.predict-4.3-0/glm.predict/R/basepredict.vglm.R |only glm.predict-4.3-0/glm.predict/R/dc.vglm.R |only glm.predict-4.3-0/glm.predict/R/getBaseCombinations.R | 3 + glm.predict-4.3-0/glm.predict/R/getCombinations.R | 16 ++++++-- glm.predict-4.3-0/glm.predict/R/predicts.R | 25 +++++++++---- glm.predict-4.3-0/glm.predict/R/zzz.R |only glm.predict-4.3-0/glm.predict/README.md |only glm.predict-4.3-0/glm.predict/build/partial.rdb |binary glm.predict-4.3-0/glm.predict/build/vignette.rds |binary glm.predict-4.3-0/glm.predict/inst/CITATION |only glm.predict-4.3-0/glm.predict/inst/doc/glm.predict.R |only glm.predict-4.3-0/glm.predict/inst/doc/glm.predict.Rmd |only glm.predict-4.3-0/glm.predict/inst/doc/glm.predict.html |only glm.predict-4.3-0/glm.predict/man/basepredict.vglm.Rd |only glm.predict-4.3-0/glm.predict/man/dc.vglm.Rd |only glm.predict-4.3-0/glm.predict/vignettes/glm.predict.Rmd |only 24 files changed, 70 insertions(+), 37 deletions(-)
Title: Fitting Hidden Markov Models to Financial Data
Description: Fitting (hierarchical) hidden Markov models to financial data
via maximum likelihood estimation. See Oelschläger, L. and Adam, T.
"Detecting bearish and bullish markets in financial time series using
hierarchical hidden Markov models" (2021, Statistical Modelling)
<doi:10.1177/1471082X211034048> for a reference.
Author: Lennart Oelschlaeger [aut, cre]
,
Timo Adam [aut] ,
Rouven Michels [aut]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Diff between fHMM versions 1.2.0 dated 2023-12-13 and 1.2.1 dated 2024-01-15
DESCRIPTION | 6 MD5 | 26 +- NEWS.md | 4 R/fHMM_likelihood.R | 14 - inst/doc/v01_model_definition.html | 2 inst/doc/v02_controls.html | 2 inst/doc/v03_data_management.html | 2 inst/doc/v04_model_estimation.html | 2 inst/doc/v05_state_decoding_and_prediction.html | 2 inst/doc/v06_model_checking.html | 2 inst/doc/v07_model_selection.html | 2 tests/testthat/_snaps/fHMM_controls.md | 312 ++++++++++++------------ tests/testthat/_snaps/fHMM_data.md | 146 +++++------ tests/testthat/_snaps/fHMM_parameters.md | 22 - 14 files changed, 277 insertions(+), 267 deletions(-)
Title: Data Science for Wind Energy
Description: Data science methods used in wind energy applications.
Current functionalities include creating a multi-dimensional power curve model,
performing power curve function comparison, covariate matching, and energy decomposition.
Relevant works for the developed functions are:
funGP() - Prakash et al. (2022) <doi:10.1080/00401706.2021.1905073>,
AMK() - Lee et al. (2015) <doi:10.1080/01621459.2014.977385>,
tempGP() - Prakash et al. (2022) <doi:10.1080/00401706.2022.2069158>,
ComparePCurve() - Ding et al. (2021) <doi:10.1016/j.renene.2021.02.136>,
deltaEnergy() - Latiffianti et al. (2022) <doi:10.1002/we.2722>,
syncSize() - Latiffianti et al. (2022) <doi:10.1002/we.2722>,
imptPower() - Latiffianti et al. (2022) <doi:10.1002/we.2722>,
All other functions - Ding (2019, ISBN:9780429956508).
Author: Nitesh Kumar [aut],
Abhinav Prakash [aut],
Yu Ding [aut, cre],
Effi Latiffianti [ctb, cph]
Maintainer: Yu Ding <yuding2007@gmail.com>
Diff between DSWE versions 1.6.3 dated 2023-07-21 and 1.7.0 dated 2024-01-15
DSWE-1.6.3/DSWE/R/BayesTreePCFit.R |only DSWE-1.6.3/DSWE/man/BayesTreePCFit.Rd |only DSWE-1.7.0/DSWE/DESCRIPTION | 21 ++++++++++----------- DSWE-1.7.0/DSWE/MD5 | 6 ++---- DSWE-1.7.0/DSWE/NAMESPACE | 2 -- 5 files changed, 12 insertions(+), 17 deletions(-)
Title: Provides a Link Between the 'Refinitiv Datastream' System and R
Description: Provides a set of functions and a class to connect, extract and
upload information from the 'Refinitiv Datastream' database. This
package uses the 'DSWS' API and server used by the 'Datastream DFO addin'.
Details of this API are available at <https://www.lseg.com/en/data-analytics>.
Please report issues at <https://github.com/CharlesCara/DatastreamDSWS2R/issues>.
Author: Charles Cara
Maintainer: Charles Cara <charles.cara@absolute-strategy.com>
Diff between DatastreamDSWS2R versions 1.8.2 dated 2021-10-05 and 1.9.7 dated 2024-01-15
DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotEncryptPassword.Rd |only DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotconvertJSONString.Rd |only DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotconvert_JSON_Bool.Rd |only DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotconvert_JSON_Date.Rd |only DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotconvert_JSON_Datetime.Rd |only DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotconvert_JSON_Double.Rd |only DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotconvert_JSON_Integer.Rd |only DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotconvert_JSON_String.Rd |only DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotgetJSONValue.Rd |only DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotgetSymbol.Rd |only DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotgetTimeseries.Rd |only DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotgetType.Rd |only DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotgetValue.Rd |only DatastreamDSWS2R-1.8.2/DatastreamDSWS2R/man/dotgetValueTyped.Rd |only DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/DESCRIPTION | 12 DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/MD5 | 44 DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/NEWS.md | 16 DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/R/UCTSUpload.R | 928 +- DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/R/cbindRobust.R | 10 DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/R/classConstructor.R | 3420 ++++------ DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/R/common.R | 98 DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/R/wrapper.R | 152 DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/README.md | 355 - DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/man/UCTSAppend.Rd | 4 DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/man/classconstructor.Rd | 8 DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/tests/testthat/test-UCTSAppend.R | 70 DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/tests/testthat/test-UCTSUpload.R | 402 - DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/tests/testthat/test-dsws-timeSeriesListRequest.R | 18 DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/tests/testthat/test-dsws-timeSeriesRequest.R | 242 DatastreamDSWS2R-1.9.7/DatastreamDSWS2R/tests/testthat/test-wrapper-staticListRequestSet.R | 17 30 files changed, 3016 insertions(+), 2780 deletions(-)
More information about DatastreamDSWS2R at CRAN
Permanent link
Title: Coordinated Networks Detection on Social Media
Description: Detects a variety of coordinated actions on social media and outputs the network of coordinated users along with related information.
Author: Nicola Righetti [aut, cre] ,
Paul Balluff [aut]
Maintainer: Nicola Righetti <nicola.righetti@univie.ac.at>
Diff between CooRTweet versions 1.5.0 dated 2023-09-05 and 2.0.0 dated 2024-01-15
CooRTweet-1.5.0/CooRTweet/R/detect_coordinated_groups.R |only CooRTweet-1.5.0/CooRTweet/R/generate_network.R |only CooRTweet-1.5.0/CooRTweet/R/simulate_data.R |only CooRTweet-1.5.0/CooRTweet/R/user_stats.R |only CooRTweet-1.5.0/CooRTweet/man/detect_coordinated_groups.Rd |only CooRTweet-1.5.0/CooRTweet/man/detect_similar_text.Rd |only CooRTweet-1.5.0/CooRTweet/man/filter_min_repetition.Rd |only CooRTweet-1.5.0/CooRTweet/man/generate_network.Rd |only CooRTweet-1.5.0/CooRTweet/man/remove_loops.Rd |only CooRTweet-1.5.0/CooRTweet/man/simulate_data.Rd |only CooRTweet-1.5.0/CooRTweet/man/user_stats.Rd |only CooRTweet-1.5.0/CooRTweet/tests/testthat/test-simulated_data.R |only CooRTweet-2.0.0/CooRTweet/DESCRIPTION | 16 CooRTweet-2.0.0/CooRTweet/MD5 | 64 - CooRTweet-2.0.0/CooRTweet/NAMESPACE | 16 CooRTweet-2.0.0/CooRTweet/NEWS.md | 35 CooRTweet-2.0.0/CooRTweet/R/account_stats.R |only CooRTweet-2.0.0/CooRTweet/R/calc_group_combinations.R | 12 CooRTweet-2.0.0/CooRTweet/R/data.R | 2 CooRTweet-2.0.0/CooRTweet/R/detect_groups.R |only CooRTweet-2.0.0/CooRTweet/R/flag_speed_share.R |only CooRTweet-2.0.0/CooRTweet/R/generate_coordinated_network.R |only CooRTweet-2.0.0/CooRTweet/R/group_stats.r | 112 ++ CooRTweet-2.0.0/CooRTweet/R/prep_data.R |only CooRTweet-2.0.0/CooRTweet/R/preprocess_twitter.R | 4 CooRTweet-2.0.0/CooRTweet/R/reshape_tweets.r | 132 ++- CooRTweet-2.0.0/CooRTweet/README.md | 6 CooRTweet-2.0.0/CooRTweet/data/russian_coord_tweets.rda |binary CooRTweet-2.0.0/CooRTweet/inst/doc/vignette.R | 89 +- CooRTweet-2.0.0/CooRTweet/inst/doc/vignette.Rmd | 187 ++-- CooRTweet-2.0.0/CooRTweet/inst/doc/vignette.html | 390 +++++----- CooRTweet-2.0.0/CooRTweet/man/account_stats.Rd |only CooRTweet-2.0.0/CooRTweet/man/detect_groups.Rd |only CooRTweet-2.0.0/CooRTweet/man/do_remove_loops.Rd |only CooRTweet-2.0.0/CooRTweet/man/filter_min_participation.Rd |only CooRTweet-2.0.0/CooRTweet/man/flag_speed_share.Rd |only CooRTweet-2.0.0/CooRTweet/man/generate_coordinated_network.Rd |only CooRTweet-2.0.0/CooRTweet/man/group_stats.Rd | 24 CooRTweet-2.0.0/CooRTweet/man/normalize_text.Rd | 2 CooRTweet-2.0.0/CooRTweet/man/prep_data.Rd |only CooRTweet-2.0.0/CooRTweet/man/preprocess_tweets.Rd | 4 CooRTweet-2.0.0/CooRTweet/man/reshape_tweets.Rd | 6 CooRTweet-2.0.0/CooRTweet/man/russian_coord_tweets.Rd | 2 CooRTweet-2.0.0/CooRTweet/tests/testthat/test-sample_data.R | 37 CooRTweet-2.0.0/CooRTweet/vignettes/vignette.Rmd | 187 ++-- 45 files changed, 780 insertions(+), 547 deletions(-)
Title: Genetic Analysis of Populations with Mixed Reproduction
Description: Population genetic analyses for hierarchical analysis of partially
clonal populations built upon the architecture of the 'adegenet' package.
Originally described in Kamvar, Tabima, and Grünwald (2014)
<doi:10.7717/peerj.281> with version 2.0 described in Kamvar, Brooks, and
Grünwald (2015) <doi:10.3389/fgene.2015.00208>.
Author: Zhian N. Kamvar [cre, aut] ,
Javier F. Tabima [aut] ,
Sydney E. Everhart [ctb, dtc] ,
Jonah C. Brooks [aut],
Stacy A. Krueger-Hadfield [ctb]
,
Erik Sotka [ctb],
Brian J. Knaus [ctb] ,
Patrick G. Meirmans [ctb] ,
Frederic D. Chevalier [ctb] ,
David Fo [...truncated...]
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>
Diff between poppr versions 2.9.4 dated 2023-03-22 and 2.9.5 dated 2024-01-15
DESCRIPTION | 6 MD5 | 42 +- NEWS.md | 10 R/Index_calculations.r | 691 ++++++++++++++++++++++------------------------- R/filter_stats.R | 9 R/methods.r | 4 R/mlg.r | 166 +++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/algo.Rnw | 2 inst/doc/algo.pdf |binary man/cutoff_predictor.Rd | 2 man/filter_stats.Rd | 2 man/genclone-method.Rd | 8 man/ia.Rd | 296 ++++++++++---------- man/locus_table.Rd | 17 - man/mlg.Rd | 133 +++++---- man/plot_filter_stats.Rd | 2 man/poppr.Rd | 333 +++++++++++----------- man/poppr.all.Rd | 6 man/private_alleles.Rd | 2 vignettes/algo.Rnw | 2 22 files changed, 863 insertions(+), 870 deletions(-)
Title: Classifications and Codelists for Statistics Norway
Description: Functions to search, retrieve and apply classifications
and codelists using Statistics Norway's API <https://www.ssb.no/klass>
from the system 'KLASS'. Retrieves classifications by date with options
to choose language, hierarchical level and formatting.
Author: Susie Jentoft [aut, cre],
Diana-Cristina Iancu [aut],
Lisa Li [aut],
Statistics Norway [cph]
Maintainer: Susie Jentoft <susie.jentoft@ssb.no>
Diff between klassR versions 0.2.1 dated 2023-05-08 and 0.2.3 dated 2024-01-15
DESCRIPTION | 31 ++++++++++++++++++++++++------- LICENSE |only MD5 | 13 +++++++------ NEWS.md | 10 ++++++++++ R/Hent_data.R | 3 +++ R/KLASS.R | 3 +++ tests/testthat/test_ApplyKlass.R | 4 ++++ tests/testthat/test_GetKlass.R | 4 ++-- 8 files changed, 53 insertions(+), 15 deletions(-)
Title: Time Series Performance
Description: A tool to calculate the performance of a time series in a specific date or period. It is more intended for data analysis in the fields of finance, banking, telecommunications or operational marketing.
Author: Patrick Ilunga [aut, cre],
Ilunga Buabua Patrick [cph]
Maintainer: Patrick Ilunga <patrick.ilunga@unikin.ac.cd>
Diff between iperform versions 0.0.2 dated 2024-01-08 and 0.0.3 dated 2024-01-15
DESCRIPTION | 8 ++++---- MD5 | 6 ++++-- NEWS.md | 5 +++++ inst/figures |only 4 files changed, 13 insertions(+), 6 deletions(-)
Title: Plot Data on Oceanographic Maps using 'ggplot2'
Description: Allows plotting data on bathymetric maps using 'ggplot2'. Plotting
oceanographic spatial data is made as simple as feasible, but also flexible
for custom modifications. Data that contain geographic information from
anywhere around the globe can be plotted on maps generated by the basemap()
or qmap() functions using 'ggplot2' layers separated by the '+' operator. The
package uses spatial shape- ('sf') and raster ('stars') files, geospatial
packages for R to manipulate, and the 'ggplot2' package to plot these
files. The package ships with low-resolution spatial data files and
higher resolution files for detailed maps are stored in the
'ggOceanMapsLargeData' repository on GitHub and downloaded automatically
when needed.
Author: Mikko Vihtakari [aut, cre] ,
Roger Bivand [ctb],
Hadley Wickham [ctb]
Maintainer: Mikko Vihtakari <mikko.vihtakari@hi.no>
Diff between ggOceanMaps versions 2.1.1 dated 2023-08-30 and 2.2.0 dated 2024-01-15
DESCRIPTION | 8 MD5 | 36 +- R/basemap.R | 35 ++ R/basemap_data.R | 440 +++++++++++++++++-------------- R/dist2land.R | 4 R/get_depth.R | 39 ++ R/internal_functions.R | 68 ++-- R/load_map_data.R | 4 R/map_cmd.R | 4 R/qmap.R | 11 R/raster_bathymetry.R | 2 R/shapefile_list.R | 24 - build/partial.rdb |binary data/ices_areas.rda |binary man/basemap.Rd | 6 man/basemap_data.Rd | 2 man/figures/README-unnamed-chunk-4-1.png |binary man/qmap.Rd | 8 man/raster_bathymetry.Rd | 2 19 files changed, 412 insertions(+), 281 deletions(-)
Title: Structural Data for Norway
Description: Datasets relating to population in municipalities, municipality/county matching, and how different municipalities have merged/redistricted over time from 2006 to 2024.
Author: Richard Aubrey White [aut, cre]
,
Chi Zhang [aut] ,
CSIDS [cph]
Maintainer: Richard Aubrey White <hello@rwhite.no>
Diff between csdata versions 2023.5.22 dated 2023-05-22 and 2023.12.22 dated 2024-01-15
DESCRIPTION | 18 LICENSE | 2 MD5 | 42 NEWS.md | 26 R/nor_locations_hierarchy.R | 8 R/nor_locations_names.R | 1 R/nor_population_by_age_cats.R | 4 R/sysdata.rda |binary README.md | 2 build/vignette.rds |binary inst/doc/csdata.R | 2 inst/doc/csdata.html | 370 +++--- inst/doc/locations_norway.R | 2 inst/doc/locations_norway.html | 1674 ++++++++++++++-------------- inst/doc/population_norway.R | 62 - inst/doc/population_norway.Rmd | 58 inst/doc/population_norway.html | 1936 +++++++++++++++++---------------- man/figures/logo.png |binary man/nor_locations_hierarchy_from_to.Rd | 4 man/nor_locations_names.Rd | 1 man/nor_population_by_age_cats.Rd | 4 vignettes/population_norway.Rmd | 58 22 files changed, 2190 insertions(+), 2084 deletions(-)
Title: An Alternative to the Kruskal-Wallis Based on the Kendall Tau
Distance
Description: The Concordance Test is a non-parametric method for testing whether two o more samples originate from the same distribution. It extends the Kendall Tau correlation coefficient when there are only two groups. For details, see Alcaraz J., Anton-Sanchez L., Monge J.F. (2022) The Concordance Test, an Alternative to Kruskal-Wallis Based on the Kendall-tau Distance: An R Package. The R Journal 14, 26–53 <doi:10.32614/RJ-2022-039>.
Author: Javier Alcaraz [aut],
Laura Anton-Sanchez [aut, cre],
Juan Francisco Monge [aut]
Maintainer: Laura Anton-Sanchez <l.anton@umh.es>
Diff between ConcordanceTest versions 1.0.2 dated 2022-04-20 and 1.0.3 dated 2024-01-15
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NEWS.md | 7 +++++++ 3 files changed, 14 insertions(+), 7 deletions(-)
More information about ConcordanceTest at CRAN
Permanent link
Title: Treatment Allocation in Clinical Trials by the Maximal Procedure
Description: Performs treatment allocation in two-arm clinical trials by the maximal procedure described by Berger et al. (2003) <doi:10.1002/sim.1538>. To that end, the algorithm provided by Salama et al. (2008) <doi:10.1002/sim.3014> is implemented.
Author: Ignacio Lopez-de-Ullibarri [aut, cre]
Maintainer: Ignacio Lopez-de-Ullibarri <ignacio.lopezdeullibarri@udc.es>
Diff between MPBoost versions 0.1-5 dated 2022-11-29 and 0.1-6 dated 2024-01-15
MPBoost-0.1-5/MPBoost/src/Makevars |only MPBoost-0.1-5/MPBoost/src/Makevars.win |only MPBoost-0.1-6/MPBoost/ChangeLog | 8 ++++++++ MPBoost-0.1-6/MPBoost/DESCRIPTION | 8 ++++---- MPBoost-0.1-6/MPBoost/MD5 | 14 ++++++-------- MPBoost-0.1-6/MPBoost/build/partial.rdb |binary MPBoost-0.1-6/MPBoost/build/vignette.rds |binary MPBoost-0.1-6/MPBoost/inst/doc/mpboost.R | 2 +- MPBoost-0.1-6/MPBoost/inst/doc/mpboost.pdf |binary 9 files changed, 19 insertions(+), 13 deletions(-)
Title: Likelihood-Based Intrinsic Dimension Estimators
Description: Provides functions to estimate the intrinsic dimension of a dataset
via likelihood-based approaches. Specifically, the package implements the
'TWO-NN' and 'Gride' estimators and the 'Hidalgo' Bayesian mixture model.
In addition, the first reference contains an extended vignette on the usage of
the 'TWO-NN' and 'Hidalgo' models. References:
Denti (2023, <doi:10.18637/jss.v106.i09>);
Allegra et al. (2020, <doi:10.1038/s41598-020-72222-0>);
Denti et al. (2022, <doi:10.1038/s41598-022-20991-1>);
Facco et al. (2017, <doi:10.1038/s41598-017-11873-y>);
Santos-Fernandez et al. (2021, <doi:10.1038/s41598-022-20991-1>).
Author: Francesco Denti [aut, cre, cph]
,
Andrea Gilardi [aut]
Maintainer: Francesco Denti <francescodenti.personal@gmail.com>
Diff between intRinsic versions 1.0.1 dated 2023-04-26 and 1.0.2 dated 2024-01-15
DESCRIPTION | 12 ++++++------ MD5 | 15 ++++++++------- NEWS.md | 5 +++++ R/hidalgo.R | 7 ++++--- R/rdir_exmcmcPack.R |only R/twoNN.R | 7 ++----- README.md | 4 ++-- man/Hidalgo.Rd | 3 ++- man/twonn.Rd | 7 ++----- 9 files changed, 31 insertions(+), 29 deletions(-)
Title: Datasets for 'spatstat' Family
Description: Contains all the datasets for the 'spatstat' family of packages.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut] ,
W Aherne [ctb],
Freda Alexander [ctb],
Qi Wei Ang [ctb],
Sourav Banerjee [ctb],
Mark Berman [ctb],
R Bernhardt [ctb],
Thomas Berndtsen [ctb],
Andrew Bevan [ctb],
Jeffrey Betts [ctb],
[...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.data versions 3.0-3 dated 2023-10-24 and 3.0-4 dated 2024-01-15
DESCRIPTION | 8 +- MD5 | 124 +++++++++++++++++++++++----------------------- NEWS | 13 ++++ data/Kovesi.rda |binary data/amacrine.rda |binary data/anemones.rda |binary data/ants.rda |binary data/austates.rda |binary data/bdspots.rda |binary data/bei.rda |binary data/betacells.rda |binary data/bramblecanes.rda |binary data/bronzefilter.rda |binary data/btb.rda |binary data/cells.rda |binary data/cetaceans.rda |binary data/chicago.rda |binary data/chorley.rda |binary data/clmfires.rda |binary data/concrete.rda |binary data/copper.rda |binary data/demohyper.rda |binary data/demopat.rda |binary data/dendrite.rda |binary data/finpines.rda |binary data/flu.rda |binary data/ganglia.rda |binary data/gordon.rda |binary data/gorillas.rda |binary data/hamster.rda |binary data/heather.rda |binary data/humberside.rda |binary data/hyytiala.rda |binary data/japanesepines.rda |binary data/lansing.rda |binary data/letterR.rda |binary data/longleaf.rda |binary data/mucosa.rda |binary data/murchison.rda |binary data/nbfires.rda |binary data/nztrees.rda |binary data/osteo.rda |binary data/paracou.rda |binary data/ponderosa.rda |binary data/pyramidal.rda |binary data/redwood.rda |binary data/redwood3.rda |binary data/redwoodfull.rda |binary data/residualspaper.rda |binary data/shapley.rda |binary data/simba.rda |binary data/simdat.rda |binary data/simplenet.rda |binary data/spiders.rda |binary data/sporophores.rda |binary data/spruces.rda |binary data/stonetools.rda |binary data/swedishpines.rda |binary data/urkiola.rda |binary data/vesicles.rda |binary data/waka.rda |binary data/waterstriders.rda |binary inst/doc/packagesizes.txt | 1 63 files changed, 80 insertions(+), 66 deletions(-)
Title: Calculate Standardised Drought Indices Using NASA POWER Data
Description: A set of functions designed to calculate the standardised
precipitation and standardised precipitation evapotranspiration indices
using NASA POWER data as described in Blain et al. (2023)
<doi:10.2139/ssrn.4442843>. These indices are calculated using a reference
data source. The functions verify if the indices' estimates meet the
assumption of normality and how well NASA POWER estimates represent
real-world data. Indices are calculated in a routine mode. Potential
evapotranspiration amounts and the difference between rainfall and potential
evapotranspiration are also calculated. The functions adopt a basic time
scale that splits each month into four periods. Days 1 to 7, days 8 to 14,
days 15 to 21, and days 22 to 28, 29, 30, or 31, where 'TS=4' corresponds to
a 1-month length moving window (calculated 4 times per month) and 'TS=48'
corresponds to a 12-month length moving window (calculated 4 times per
month).
Author: Gabriel Constantino Blain [aut, cre]
,
Graciela R. Sobierajski [aut] ,
Leticia L. Martins [aut] ,
Adam H. Sparks [aut]
Maintainer: Gabriel Constantino Blain <gabriel.blain@sp.gov.br>
Diff between PowerSDI versions 0.1.3 dated 2023-11-19 and 1.0.0 dated 2024-01-15
DESCRIPTION | 6 ++-- MD5 | 30 +++++++++++----------- NEWS.md | 46 +++++++++++++++++++---------------- R/ScientSDI.R | 34 +++++++++++++++++-------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Intro_to_PowerSDI.Rmd | 8 ++---- inst/doc/Intro_to_PowerSDI.html | 14 +++++----- man/ScientSDI.Rd | 6 +++- tests/fixtures/OperatSDI-HS.yml | 35 +++++++++++++------------- tests/fixtures/OperatSDI-PM.yml | 35 +++++++++++++------------- tests/fixtures/PlotData.yml | 35 +++++++++++++------------- tests/fixtures/ScientSDI.yml | 37 ++++++++++++++-------------- tests/testthat/Rplots.pdf |binary vignettes/Intro_to_PowerSDI.Rmd | 8 ++---- vignettes/Intro_to_PowerSDI.Rmd.orig | 6 ++-- 16 files changed, 160 insertions(+), 140 deletions(-)
Title: Amazon Web Services Software Development Kit
Description: Interface to Amazon Web Services <https://aws.amazon.com>,
including storage, database, and compute services, such as 'Simple
Storage Service' ('S3'), 'DynamoDB' 'NoSQL' database, and 'Lambda'
functions-as-a-service.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws versions 0.4.0 dated 2023-09-15 and 0.5.0 dated 2024-01-15
paws-0.4.0/paws/man/macie.Rd |only paws-0.5.0/paws/DESCRIPTION | 22 paws-0.5.0/paws/MD5 | 524 paws-0.5.0/paws/NAMESPACE | 36 paws-0.5.0/paws/R/paws.R |19308 +++++++----- paws-0.5.0/paws/man/accessanalyzer.Rd | 76 paws-0.5.0/paws/man/account.Rd | 38 paws-0.5.0/paws/man/acm.Rd | 38 paws-0.5.0/paws/man/acmpca.Rd | 38 paws-0.5.0/paws/man/apigateway.Rd | 38 paws-0.5.0/paws/man/apigatewaymanagementapi.Rd | 38 paws-0.5.0/paws/man/apigatewayv2.Rd | 38 paws-0.5.0/paws/man/appfabric.Rd |only paws-0.5.0/paws/man/applicationautoscaling.Rd | 39 paws-0.5.0/paws/man/applicationcostprofiler.Rd | 38 paws-0.5.0/paws/man/applicationinsights.Rd | 38 paws-0.5.0/paws/man/appmesh.Rd | 38 paws-0.5.0/paws/man/appregistry.Rd | 38 paws-0.5.0/paws/man/apprunner.Rd | 40 paws-0.5.0/paws/man/appstream.Rd | 38 paws-0.5.0/paws/man/arczonalshift.Rd |only paws-0.5.0/paws/man/athena.Rd | 42 paws-0.5.0/paws/man/auditmanager.Rd | 38 paws-0.5.0/paws/man/augmentedairuntime.Rd | 38 paws-0.5.0/paws/man/autoscaling.Rd | 38 paws-0.5.0/paws/man/autoscalingplans.Rd | 38 paws-0.5.0/paws/man/backup.Rd | 57 paws-0.5.0/paws/man/backupgateway.Rd | 38 paws-0.5.0/paws/man/backupstorage.Rd | 38 paws-0.5.0/paws/man/batch.Rd | 38 paws-0.5.0/paws/man/bedrock.Rd |only paws-0.5.0/paws/man/bedrockruntime.Rd |only paws-0.5.0/paws/man/billingconductor.Rd | 42 paws-0.5.0/paws/man/braket.Rd | 38 paws-0.5.0/paws/man/budgets.Rd | 38 paws-0.5.0/paws/man/cloud9.Rd | 39 paws-0.5.0/paws/man/cloudcontrolapi.Rd | 38 paws-0.5.0/paws/man/clouddirectory.Rd | 38 paws-0.5.0/paws/man/cloudformation.Rd | 38 paws-0.5.0/paws/man/cloudfront.Rd | 61 paws-0.5.0/paws/man/cloudhsm.Rd | 38 paws-0.5.0/paws/man/cloudhsmv2.Rd | 38 paws-0.5.0/paws/man/cloudsearch.Rd | 38 paws-0.5.0/paws/man/cloudsearchdomain.Rd | 38 paws-0.5.0/paws/man/cloudtrail.Rd | 44 paws-0.5.0/paws/man/cloudtraildataservice.Rd |only paws-0.5.0/paws/man/cloudwatch.Rd | 38 paws-0.5.0/paws/man/cloudwatchevents.Rd | 38 paws-0.5.0/paws/man/cloudwatchevidently.Rd | 38 paws-0.5.0/paws/man/cloudwatchinternetmonitor.Rd |only paws-0.5.0/paws/man/cloudwatchlogs.Rd | 63 paws-0.5.0/paws/man/cloudwatchobservabilityaccessmanager.Rd |only paws-0.5.0/paws/man/cloudwatchrum.Rd | 38 paws-0.5.0/paws/man/codeartifact.Rd | 38 paws-0.5.0/paws/man/codebuild.Rd | 40 paws-0.5.0/paws/man/codecatalyst.Rd |only paws-0.5.0/paws/man/codecommit.Rd | 42 paws-0.5.0/paws/man/codedeploy.Rd | 46 paws-0.5.0/paws/man/codeguruprofiler.Rd | 38 paws-0.5.0/paws/man/codegurureviewer.Rd | 40 paws-0.5.0/paws/man/codegurusecurity.Rd |only paws-0.5.0/paws/man/codepipeline.Rd | 40 paws-0.5.0/paws/man/codestar.Rd | 38 paws-0.5.0/paws/man/codestarconnections.Rd | 55 paws-0.5.0/paws/man/codestarnotifications.Rd | 38 paws-0.5.0/paws/man/cognitoidentity.Rd | 38 paws-0.5.0/paws/man/cognitoidentityprovider.Rd | 94 paws-0.5.0/paws/man/cognitosync.Rd | 42 paws-0.5.0/paws/man/comprehend.Rd | 43 paws-0.5.0/paws/man/comprehendmedical.Rd | 38 paws-0.5.0/paws/man/computeoptimizer.Rd | 38 paws-0.5.0/paws/man/configservice.Rd | 42 paws-0.5.0/paws/man/connect.Rd | 105 paws-0.5.0/paws/man/connectcampaignservice.Rd | 38 paws-0.5.0/paws/man/connectcases.Rd |only paws-0.5.0/paws/man/connectcontactlens.Rd | 38 paws-0.5.0/paws/man/connectparticipant.Rd | 38 paws-0.5.0/paws/man/connectwisdomservice.Rd | 50 paws-0.5.0/paws/man/controltower.Rd |only paws-0.5.0/paws/man/costandusagereportservice.Rd | 69 paws-0.5.0/paws/man/costexplorer.Rd | 38 paws-0.5.0/paws/man/customerprofiles.Rd | 39 paws-0.5.0/paws/man/datapipeline.Rd | 38 paws-0.5.0/paws/man/datazone.Rd |only paws-0.5.0/paws/man/dax.Rd | 38 paws-0.5.0/paws/man/detective.Rd | 43 paws-0.5.0/paws/man/devopsguru.Rd | 38 paws-0.5.0/paws/man/directconnect.Rd | 38 paws-0.5.0/paws/man/directoryservice.Rd | 38 paws-0.5.0/paws/man/dlm.Rd | 40 paws-0.5.0/paws/man/docdb.Rd | 38 paws-0.5.0/paws/man/docdbelastic.Rd |only paws-0.5.0/paws/man/drs.Rd | 41 paws-0.5.0/paws/man/dynamodb.Rd | 40 paws-0.5.0/paws/man/dynamodbstreams.Rd | 38 paws-0.5.0/paws/man/ebs.Rd | 38 paws-0.5.0/paws/man/ec2.Rd | 73 paws-0.5.0/paws/man/ec2instanceconnect.Rd | 38 paws-0.5.0/paws/man/ecr.Rd | 42 paws-0.5.0/paws/man/ecrpublic.Rd | 38 paws-0.5.0/paws/man/ecs.Rd | 38 paws-0.5.0/paws/man/efs.Rd | 45 paws-0.5.0/paws/man/eks.Rd | 99 paws-0.5.0/paws/man/elasticache.Rd | 47 paws-0.5.0/paws/man/elasticbeanstalk.Rd | 38 paws-0.5.0/paws/man/elasticinference.Rd | 38 paws-0.5.0/paws/man/elasticsearchservice.Rd | 38 paws-0.5.0/paws/man/elb.Rd | 38 paws-0.5.0/paws/man/elbv2.Rd | 50 paws-0.5.0/paws/man/emr.Rd | 39 paws-0.5.0/paws/man/emrcontainers.Rd | 38 paws-0.5.0/paws/man/emrserverless.Rd | 38 paws-0.5.0/paws/man/entityresolution.Rd |only paws-0.5.0/paws/man/eventbridge.Rd | 38 paws-0.5.0/paws/man/eventbridgepipes.Rd |only paws-0.5.0/paws/man/eventbridgescheduler.Rd |only paws-0.5.0/paws/man/finspace.Rd | 55 paws-0.5.0/paws/man/finspacedata.Rd | 48 paws-0.5.0/paws/man/firehose.Rd | 38 paws-0.5.0/paws/man/fis.Rd | 48 paws-0.5.0/paws/man/fms.Rd | 38 paws-0.5.0/paws/man/forecastqueryservice.Rd | 38 paws-0.5.0/paws/man/forecastservice.Rd | 38 paws-0.5.0/paws/man/frauddetector.Rd | 38 paws-0.5.0/paws/man/fsx.Rd | 42 paws-0.5.0/paws/man/glacier.Rd | 38 paws-0.5.0/paws/man/globalaccelerator.Rd | 47 paws-0.5.0/paws/man/glue.Rd | 49 paws-0.5.0/paws/man/gluedatabrew.Rd | 38 paws-0.5.0/paws/man/guardduty.Rd | 74 paws-0.5.0/paws/man/health.Rd | 40 paws-0.5.0/paws/man/healthlake.Rd | 38 paws-0.5.0/paws/man/iam.Rd | 38 paws-0.5.0/paws/man/iamrolesanywhere.Rd | 38 paws-0.5.0/paws/man/identitystore.Rd | 51 paws-0.5.0/paws/man/imagebuilder.Rd | 59 paws-0.5.0/paws/man/inspector.Rd | 38 paws-0.5.0/paws/man/inspector2.Rd | 42 paws-0.5.0/paws/man/ivs.Rd | 38 paws-0.5.0/paws/man/ivschat.Rd | 38 paws-0.5.0/paws/man/ivsrealtime.Rd |only paws-0.5.0/paws/man/kafka.Rd | 43 paws-0.5.0/paws/man/kafkaconnect.Rd | 38 paws-0.5.0/paws/man/kendra.Rd | 38 paws-0.5.0/paws/man/kendraranking.Rd |only paws-0.5.0/paws/man/keyspaces.Rd | 38 paws-0.5.0/paws/man/kinesis.Rd | 41 paws-0.5.0/paws/man/kinesisanalytics.Rd | 38 paws-0.5.0/paws/man/kinesisanalyticsv2.Rd | 38 paws-0.5.0/paws/man/kms.Rd | 38 paws-0.5.0/paws/man/lakeformation.Rd | 45 paws-0.5.0/paws/man/lambda.Rd | 38 paws-0.5.0/paws/man/lexmodelbuildingservice.Rd | 38 paws-0.5.0/paws/man/lexmodelsv2.Rd | 44 paws-0.5.0/paws/man/lexruntimeservice.Rd | 38 paws-0.5.0/paws/man/lexruntimev2.Rd | 38 paws-0.5.0/paws/man/licensemanager.Rd | 38 paws-0.5.0/paws/man/licensemanagerlinuxsubscriptions.Rd |only paws-0.5.0/paws/man/licensemanagerusersubscriptions.Rd | 38 paws-0.5.0/paws/man/lightsail.Rd | 38 paws-0.5.0/paws/man/locationservice.Rd | 38 paws-0.5.0/paws/man/lookoutequipment.Rd | 63 paws-0.5.0/paws/man/lookoutmetrics.Rd | 38 paws-0.5.0/paws/man/machinelearning.Rd | 38 paws-0.5.0/paws/man/macie2.Rd | 38 paws-0.5.0/paws/man/managedgrafana.Rd | 38 paws-0.5.0/paws/man/marketplacecatalog.Rd | 47 paws-0.5.0/paws/man/marketplacecommerceanalytics.Rd | 40 paws-0.5.0/paws/man/marketplaceentitlementservice.Rd | 38 paws-0.5.0/paws/man/marketplacemetering.Rd | 40 paws-0.5.0/paws/man/memorydb.Rd | 38 paws-0.5.0/paws/man/mq.Rd | 38 paws-0.5.0/paws/man/mturk.Rd | 38 paws-0.5.0/paws/man/mwaa.Rd | 47 paws-0.5.0/paws/man/neptune.Rd | 38 paws-0.5.0/paws/man/neptunedata.Rd |only paws-0.5.0/paws/man/networkfirewall.Rd | 38 paws-0.5.0/paws/man/networkmanager.Rd | 38 paws-0.5.0/paws/man/nimblestudio.Rd | 38 paws-0.5.0/paws/man/omics.Rd |only paws-0.5.0/paws/man/opensearchingestion.Rd |only paws-0.5.0/paws/man/opensearchservice.Rd | 46 paws-0.5.0/paws/man/opensearchserviceserverless.Rd |only paws-0.5.0/paws/man/opsworks.Rd | 38 paws-0.5.0/paws/man/opsworkscm.Rd | 38 paws-0.5.0/paws/man/organizations.Rd | 38 paws-0.5.0/paws/man/panorama.Rd | 38 paws-0.5.0/paws/man/paymentcryptographycontrolplane.Rd |only paws-0.5.0/paws/man/paymentcryptographydataplane.Rd |only paws-0.5.0/paws/man/pcaconnectorad.Rd |only paws-0.5.0/paws/man/personalize.Rd | 42 paws-0.5.0/paws/man/personalizeevents.Rd | 46 paws-0.5.0/paws/man/personalizeruntime.Rd | 41 paws-0.5.0/paws/man/pi.Rd | 44 paws-0.5.0/paws/man/pinpoint.Rd | 40 paws-0.5.0/paws/man/pinpointemail.Rd | 38 paws-0.5.0/paws/man/pinpointsmsvoice.Rd | 38 paws-0.5.0/paws/man/pinpointsmsvoicev2.Rd | 87 paws-0.5.0/paws/man/polly.Rd | 38 paws-0.5.0/paws/man/pricing.Rd | 46 paws-0.5.0/paws/man/prometheusservice.Rd | 43 paws-0.5.0/paws/man/proton.Rd | 38 paws-0.5.0/paws/man/qldb.Rd | 38 paws-0.5.0/paws/man/qldbsession.Rd | 38 paws-0.5.0/paws/man/quicksight.Rd | 48 paws-0.5.0/paws/man/ram.Rd | 38 paws-0.5.0/paws/man/rds.Rd | 68 paws-0.5.0/paws/man/rdsdataservice.Rd | 53 paws-0.5.0/paws/man/recyclebin.Rd | 42 paws-0.5.0/paws/man/redshift.Rd | 49 paws-0.5.0/paws/man/redshiftdataapiservice.Rd | 38 paws-0.5.0/paws/man/redshiftserverless.Rd | 53 paws-0.5.0/paws/man/rekognition.Rd | 81 paws-0.5.0/paws/man/resiliencehub.Rd | 40 paws-0.5.0/paws/man/resourceexplorer.Rd |only paws-0.5.0/paws/man/resourcegroups.Rd | 38 paws-0.5.0/paws/man/resourcegroupstaggingapi.Rd | 38 paws-0.5.0/paws/man/route53.Rd | 40 paws-0.5.0/paws/man/route53domains.Rd | 38 paws-0.5.0/paws/man/route53recoverycluster.Rd | 44 paws-0.5.0/paws/man/route53recoverycontrolconfig.Rd | 39 paws-0.5.0/paws/man/route53recoveryreadiness.Rd | 38 paws-0.5.0/paws/man/route53resolver.Rd | 42 paws-0.5.0/paws/man/s3.Rd | 208 paws-0.5.0/paws/man/s3control.Rd | 152 paws-0.5.0/paws/man/s3outposts.Rd | 38 paws-0.5.0/paws/man/sagemaker.Rd | 62 paws-0.5.0/paws/man/sagemakeredgemanager.Rd | 38 paws-0.5.0/paws/man/sagemakerfeaturestoreruntime.Rd | 38 paws-0.5.0/paws/man/sagemakergeospatialcapabilities.Rd |only paws-0.5.0/paws/man/sagemakermetrics.Rd |only paws-0.5.0/paws/man/sagemakerruntime.Rd | 38 paws-0.5.0/paws/man/savingsplans.Rd | 38 paws-0.5.0/paws/man/schemas.Rd | 38 paws-0.5.0/paws/man/secretsmanager.Rd | 39 paws-0.5.0/paws/man/securityhub.Rd | 54 paws-0.5.0/paws/man/securitylake.Rd |only paws-0.5.0/paws/man/serverlessapplicationrepository.Rd | 38 paws-0.5.0/paws/man/servicecatalog.Rd | 38 paws-0.5.0/paws/man/servicediscovery.Rd | 41 paws-0.5.0/paws/man/servicequotas.Rd | 38 paws-0.5.0/paws/man/ses.Rd | 38 paws-0.5.0/paws/man/sesv2.Rd | 38 paws-0.5.0/paws/man/sfn.Rd | 54 paws-0.5.0/paws/man/shield.Rd | 38 paws-0.5.0/paws/man/simpledb.Rd | 38 paws-0.5.0/paws/man/sns.Rd | 38 paws-0.5.0/paws/man/sqs.Rd | 38 paws-0.5.0/paws/man/ssm.Rd | 51 paws-0.5.0/paws/man/ssmcontacts.Rd | 38 paws-0.5.0/paws/man/ssmincidents.Rd | 44 paws-0.5.0/paws/man/ssmsap.Rd |only paws-0.5.0/paws/man/sso.Rd | 38 paws-0.5.0/paws/man/ssoadmin.Rd | 134 paws-0.5.0/paws/man/ssooidc.Rd | 89 paws-0.5.0/paws/man/storagegateway.Rd | 42 paws-0.5.0/paws/man/sts.Rd | 38 paws-0.5.0/paws/man/support.Rd | 38 paws-0.5.0/paws/man/supportapp.Rd |only paws-0.5.0/paws/man/swf.Rd | 40 paws-0.5.0/paws/man/synthetics.Rd | 40 paws-0.5.0/paws/man/telconetworkbuilder.Rd |only paws-0.5.0/paws/man/textract.Rd | 52 paws-0.5.0/paws/man/timestreamquery.Rd | 38 paws-0.5.0/paws/man/timestreamwrite.Rd | 38 paws-0.5.0/paws/man/transcribeservice.Rd | 42 paws-0.5.0/paws/man/translate.Rd | 38 paws-0.5.0/paws/man/verifiedpermissions.Rd |only paws-0.5.0/paws/man/voiceid.Rd | 38 paws-0.5.0/paws/man/vpclattice.Rd |only paws-0.5.0/paws/man/waf.Rd | 38 paws-0.5.0/paws/man/wafregional.Rd | 38 paws-0.5.0/paws/man/wafv2.Rd | 38 paws-0.5.0/paws/man/wellarchitected.Rd | 56 paws-0.5.0/paws/man/workdocs.Rd | 38 paws-0.5.0/paws/man/worklink.Rd | 38 paws-0.5.0/paws/man/workmail.Rd | 44 paws-0.5.0/paws/man/workmailmessageflow.Rd | 38 paws-0.5.0/paws/man/workspaces.Rd | 46 paws-0.5.0/paws/man/workspacesweb.Rd | 38 paws-0.5.0/paws/man/xray.Rd | 38 281 files changed, 18558 insertions(+), 11978 deletions(-)
Title: Bootstrapping the ARDL Tests for Cointegration
Description: The bootstrap ARDL tests for cointegration is the main functionality of this package. It also acts as a wrapper of the most commond ARDL testing procedures for cointegration: the bound tests of Pesaran, Shin and Smith (PSS; 2001 - <doi:10.1002/jae.616>) and the asymptotic test on the independent variables of Sam, McNown and Goh (SMG: 2019 - <doi:10.1016/j.econmod.2018.11.001>). Bootstrap and bound tests are performed under both the conditional and unconditional ARDL models.
Author: Gianmarco Vacca, Stefano Bertelli
Maintainer: Gianmarco Vacca <gianmarco.vacca@unicatt.it>
Diff between bootCT versions 2.0.0 dated 2023-11-30 and 2.1.0 dated 2024-01-15
DESCRIPTION | 9 +-- MD5 | 19 ++++--- R/boot_ardl.R | 47 +++++++++++++----- R/sim_vecm_ardl.R | 129 ++++++++++++++++++++++++++++++++++---------------- R/summary_bootCT.R | 30 +++++++++++ build |only inst |only man/boot_ardl.Rd | 26 +++++++--- man/sim_vecm_ardl.Rd | 44 ++++++++++------- man/summary.bootCT.Rd | 2 vignettes |only 11 files changed, 216 insertions(+), 90 deletions(-)
Title: Toolkit for Analysis of Genomic Data
Description: A toolkit for analysis of genomic data. The 'misha' package
implements an efficient data structure for storing genomic data, and
provides a set of functions for data extraction, manipulation and
analysis. Some of the 2D genome algorithms were described in Yaffe and Tanay
(2011) <doi:10.1038/ng.947>.
Author: Misha Hoichman [aut],
Aviezer Lifshitz [aut, cre],
Eitan Yaffe [aut],
Amos Tanay [aut],
Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between misha versions 4.2.8 dated 2023-12-05 and 4.2.9 dated 2024-01-15
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/Genomes.R | 12 ++++++------ inst/doc/Manual.R | 26 +++++++++++++------------- src/GenomeTrackQuantiles.cpp | 32 ++++++++++++++++++-------------- 7 files changed, 50 insertions(+), 42 deletions(-)
Title: Quickly Explore Your Data Using 'ggplot2' and 'table1' Summary
Tables
Description: Quickly and easily perform exploratory data analysis by uploading your
data as a 'csv' file. Start generating insights using 'ggplot2' plots and
'table1' tables with descriptive stats, all using an easy-to-use point and click
'Shiny' interface.
Author: Samer Mouksassi [aut, cre] ,
Dean Attali [aut],
James Craig [aut] ,
Benjamin Rich [aut] ,
Michael Sachs [aut]
Maintainer: Samer Mouksassi <samermouksassi@gmail.com>
Diff between ggquickeda versions 0.3.0 dated 2023-03-26 and 0.3.1 dated 2024-01-15
ggquickeda-0.3.0/ggquickeda/inst/doc/introduction_to_ggquickeda.R |only ggquickeda-0.3.0/ggquickeda/inst/doc/introduction_to_ggquickeda.Rmd |only ggquickeda-0.3.0/ggquickeda/inst/doc/introduction_to_ggquickeda.html |only ggquickeda-0.3.0/ggquickeda/man/figures/ggquickedahex.png |only ggquickeda-0.3.0/ggquickeda/vignettes/img/ggquickedahex.png |only ggquickeda-0.3.0/ggquickeda/vignettes/img/snapshot1.gif |only ggquickeda-0.3.0/ggquickeda/vignettes/introduction_to_ggquickeda.Rmd |only ggquickeda-0.3.1/ggquickeda/DESCRIPTION | 40 - ggquickeda-0.3.1/ggquickeda/MD5 | 63 - ggquickeda-0.3.1/ggquickeda/NAMESPACE | 14 ggquickeda-0.3.1/ggquickeda/NEWS.md | 35 ggquickeda-0.3.1/ggquickeda/R/data.R | 5 ggquickeda-0.3.1/ggquickeda/R/ggcontinuousexpdist.R |only ggquickeda-0.3.1/ggquickeda/R/ggkm.R | 59 - ggquickeda-0.3.1/ggquickeda/R/ggkmrisktable.R |only ggquickeda-0.3.1/ggquickeda/R/gglogisticexpdist.R |only ggquickeda-0.3.1/ggquickeda/R/logisticdata.R |only ggquickeda-0.3.1/ggquickeda/README.md | 17 ggquickeda-0.3.1/ggquickeda/build/vignette.rds |binary ggquickeda-0.3.1/ggquickeda/data/logistic_data.rda |only ggquickeda-0.3.1/ggquickeda/inst/doc/AdditionalPlotsStats.html | 58 - ggquickeda-0.3.1/ggquickeda/inst/doc/Visualizing_Summary_Data.R | 2 ggquickeda-0.3.1/ggquickeda/inst/doc/Visualizing_Summary_Data.html | 66 - ggquickeda-0.3.1/ggquickeda/inst/doc/app.html | 2 ggquickeda-0.3.1/ggquickeda/inst/doc/ggquickeda.R |only ggquickeda-0.3.1/ggquickeda/inst/doc/ggquickeda.Rmd |only ggquickeda-0.3.1/ggquickeda/inst/doc/ggquickeda.html |only ggquickeda-0.3.1/ggquickeda/inst/shinyapp/global.R | 2 ggquickeda-0.3.1/ggquickeda/inst/shinyapp/server.R | 363 +++++----- ggquickeda-0.3.1/ggquickeda/inst/shinyapp/ui.R | 10 ggquickeda-0.3.1/ggquickeda/man/figures/logo.png |only ggquickeda-0.3.1/ggquickeda/man/geom_km.Rd | 19 ggquickeda-0.3.1/ggquickeda/man/geom_kmband.Rd | 18 ggquickeda-0.3.1/ggquickeda/man/geom_kmticks.Rd | 18 ggquickeda-0.3.1/ggquickeda/man/ggcontinuousexpdist.Rd |only ggquickeda-0.3.1/ggquickeda/man/ggkmrisktable.Rd |only ggquickeda-0.3.1/ggquickeda/man/gglogisticexpdist.Rd |only ggquickeda-0.3.1/ggquickeda/man/logistic_data.Rd |only ggquickeda-0.3.1/ggquickeda/man/sample_data.Rd | 24 ggquickeda-0.3.1/ggquickeda/man/stat_km.Rd | 16 ggquickeda-0.3.1/ggquickeda/man/stat_kmband.Rd | 32 ggquickeda-0.3.1/ggquickeda/man/stat_kmticks.Rd | 16 ggquickeda-0.3.1/ggquickeda/vignettes/ggquickeda.Rmd |only 43 files changed, 473 insertions(+), 406 deletions(-)
Title: Bayesian Preference Learning with the Mallows Rank Model
Description: An implementation of the Bayesian version of the Mallows rank model
(Vitelli et al., Journal of Machine Learning Research, 2018 <https://jmlr.org/papers/v18/15-481.html>;
Crispino et al., Annals of Applied Statistics, 2019 <doi:10.1214/18-AOAS1203>;
Sorensen et al., R Journal, 2020 <doi:10.32614/RJ-2020-026>;
Stein, PhD Thesis, 2023 <https://eprints.lancs.ac.uk/id/eprint/195759>). Both Metropolis-Hastings
and sequential Monte Carlo algorithms for estimating the models are available. Cayley, footrule,
Hamming, Kendall, Spearman, and Ulam distances are supported in the models. The rank data to be
analyzed can be in the form of complete rankings, top-k rankings, partially missing rankings, as well
as consistent and inconsistent pairwise preferences. Several functions for plotting and studying the
posterior distributions of parameters are provided. The package also provides functions for estimating
the partition function (normalizing constant) of the Mallows rank mo [...truncated...]
Author: Oystein Sorensen [aut, cre] ,
Waldir Leoncio [aut],
Valeria Vitelli [aut] ,
Marta Crispino [aut],
Qinghua Liu [aut],
Cristina Mollica [aut],
Luca Tardella [aut],
Anja Stein [aut]
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>
Diff between BayesMallows versions 1.5.0 dated 2023-11-25 and 2.0.0 dated 2024-01-15
BayesMallows-1.5.0/BayesMallows/R/catch-routine-registration.R |only BayesMallows-1.5.0/BayesMallows/R/label_switching.R |only BayesMallows-1.5.0/BayesMallows/R/misc_expected_dist.R |only BayesMallows-1.5.0/BayesMallows/R/obs_freq.R |only BayesMallows-1.5.0/BayesMallows/R/plot.BayesMallows.R |only BayesMallows-1.5.0/BayesMallows/R/plot.SMCMallows.R |only BayesMallows-1.5.0/BayesMallows/R/print.BayesMallows.R |only BayesMallows-1.5.0/BayesMallows/R/print.BayesMallowsMixtures.R |only BayesMallows-1.5.0/BayesMallows/R/rank_distance.R |only BayesMallows-1.5.0/BayesMallows/R/rank_freq_distr.R |only BayesMallows-1.5.0/BayesMallows/R/smc_post_processing_functions.R |only BayesMallows-1.5.0/BayesMallows/data/data_10_6_smc.rda |only BayesMallows-1.5.0/BayesMallows/inst/doc/SMC-Mallows.R |only BayesMallows-1.5.0/BayesMallows/inst/doc/parallel_chains.R |only BayesMallows-1.5.0/BayesMallows/inst/examples/generate_constraints_example.R |only BayesMallows-1.5.0/BayesMallows/inst/examples/generate_initial_ranking_example.R |only BayesMallows-1.5.0/BayesMallows/inst/examples/generate_transitive_closure_example.R |only BayesMallows-1.5.0/BayesMallows/inst/examples/metropolis_hastings_alpha_example.R |only BayesMallows-1.5.0/BayesMallows/inst/examples/obs_freq_example.R |only BayesMallows-1.5.0/BayesMallows/inst/examples/plot.SMCMallows_example.R |only BayesMallows-1.5.0/BayesMallows/inst/examples/rank_distance_example.R |only BayesMallows-1.5.0/BayesMallows/inst/examples/rank_freq_distr_example.R |only BayesMallows-1.5.0/BayesMallows/inst/examples/smc_mallows_new_users_complete_example.R |only BayesMallows-1.5.0/BayesMallows/inst/examples/smc_post_processing_functions_example.R |only BayesMallows-1.5.0/BayesMallows/man/BayesMallows.Rd |only BayesMallows-1.5.0/BayesMallows/man/calculate_backward_probability.Rd |only BayesMallows-1.5.0/BayesMallows/man/calculate_forward_probability.Rd |only BayesMallows-1.5.0/BayesMallows/man/compute_consensus.BayesMallows.Rd |only BayesMallows-1.5.0/BayesMallows/man/compute_consensus.SMCMallows.Rd |only BayesMallows-1.5.0/BayesMallows/man/compute_importance_sampling_estimate.Rd |only BayesMallows-1.5.0/BayesMallows/man/compute_posterior_intervals.BayesMallows.Rd |only BayesMallows-1.5.0/BayesMallows/man/compute_posterior_intervals.SMCMallows.Rd |only BayesMallows-1.5.0/BayesMallows/man/compute_posterior_intervals_alpha.Rd |only BayesMallows-1.5.0/BayesMallows/man/compute_posterior_intervals_rho.Rd |only BayesMallows-1.5.0/BayesMallows/man/compute_rho_consensus.Rd |only BayesMallows-1.5.0/BayesMallows/man/correction_kernel.Rd |only BayesMallows-1.5.0/BayesMallows/man/correction_kernel_pseudo.Rd |only BayesMallows-1.5.0/BayesMallows/man/expected_dist.Rd |only BayesMallows-1.5.0/BayesMallows/man/generate_constraints.Rd |only BayesMallows-1.5.0/BayesMallows/man/generate_initial_ranking.Rd |only BayesMallows-1.5.0/BayesMallows/man/generate_transitive_closure.Rd |only BayesMallows-1.5.0/BayesMallows/man/get_rank_distance.Rd |only BayesMallows-1.5.0/BayesMallows/man/label_switching.Rd |only BayesMallows-1.5.0/BayesMallows/man/obs_freq.Rd |only BayesMallows-1.5.0/BayesMallows/man/prepare_partition_function.Rd |only BayesMallows-1.5.0/BayesMallows/man/print.BayesMallowsMixtures.Rd |only BayesMallows-1.5.0/BayesMallows/man/rank_conversion.Rd |only BayesMallows-1.5.0/BayesMallows/man/rank_distance.Rd |only BayesMallows-1.5.0/BayesMallows/man/rank_freq_distr.Rd |only BayesMallows-1.5.0/BayesMallows/man/run_mcmc.Rd |only BayesMallows-1.5.0/BayesMallows/man/sample_dataset.Rd |only BayesMallows-1.5.0/BayesMallows/man/smc_mallows_new_item_rank.Rd |only BayesMallows-1.5.0/BayesMallows/man/smc_mallows_new_users.Rd |only BayesMallows-1.5.0/BayesMallows/src/misc.cpp |only BayesMallows-1.5.0/BayesMallows/src/misc.h |only BayesMallows-1.5.0/BayesMallows/src/missing_data.cpp |only BayesMallows-1.5.0/BayesMallows/src/mixtures.cpp |only BayesMallows-1.5.0/BayesMallows/src/mixtures.h |only BayesMallows-1.5.0/BayesMallows/src/pairwise_comparisons.cpp |only BayesMallows-1.5.0/BayesMallows/src/parameterupdates.cpp |only BayesMallows-1.5.0/BayesMallows/src/parameterupdates.h |only BayesMallows-1.5.0/BayesMallows/src/partitionfuns.cpp |only BayesMallows-1.5.0/BayesMallows/src/partitionfuns.h |only BayesMallows-1.5.0/BayesMallows/src/sample.cpp |only BayesMallows-1.5.0/BayesMallows/src/sample.h |only BayesMallows-1.5.0/BayesMallows/src/setdiff.h |only BayesMallows-1.5.0/BayesMallows/src/smc.h |only BayesMallows-1.5.0/BayesMallows/src/smc_calculate_probability.cpp |only BayesMallows-1.5.0/BayesMallows/src/smc_correction_kernel.cpp |only BayesMallows-1.5.0/BayesMallows/src/smc_correction_kernel_pseudo.cpp |only BayesMallows-1.5.0/BayesMallows/src/smc_get_exponent_sum.cpp |only BayesMallows-1.5.0/BayesMallows/src/smc_get_sample_probabilities.cpp |only BayesMallows-1.5.0/BayesMallows/src/smc_leap_and_shift_probs.cpp |only BayesMallows-1.5.0/BayesMallows/src/smc_mallows_new_item_rank.cpp |only BayesMallows-1.5.0/BayesMallows/src/smc_mallows_new_users.cpp |only BayesMallows-1.5.0/BayesMallows/src/smc_mallows_new_users.h |only BayesMallows-1.5.0/BayesMallows/src/smc_mallows_new_users_funs.cpp |only BayesMallows-1.5.0/BayesMallows/src/smc_metropolis_hastings_alpha.cpp |only BayesMallows-1.5.0/BayesMallows/src/smc_metropolis_hastings_aug_ranking.cpp |only BayesMallows-1.5.0/BayesMallows/src/smc_metropolis_hastings_rho.cpp |only BayesMallows-1.5.0/BayesMallows/src/subset.h |only BayesMallows-1.5.0/BayesMallows/src/test-leapandshift.cpp |only BayesMallows-1.5.0/BayesMallows/src/test-misc.cpp |only BayesMallows-1.5.0/BayesMallows/src/test-runner.cpp |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-bulletproofing.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-classes_compute_consensus_posterior.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-compute_mallows_mixtures.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-compute_mallows_parallel_chains.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-cpp.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-distance_function.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-generate_ranking.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-generate_transitive_closure.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-mcmc_function.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-partition_function.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-random_number_seed.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-rank_freq_distr.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-smc_compute_rho_consensus.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-smc_individual_functions.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-smc_mallows_complete_rankings.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-smc_mallows_new_item_rank.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-smc_mallows_partial_rankings.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-smc_post_processing.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-smc_pseudolikelihood.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-smc_uniform.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-smc_updated_new_item_rank.R |only BayesMallows-1.5.0/BayesMallows/tests/testthat/test-transitive_closure.R |only BayesMallows-2.0.0/BayesMallows/DESCRIPTION | 19 BayesMallows-2.0.0/BayesMallows/MD5 | 434 ++- BayesMallows-2.0.0/BayesMallows/NAMESPACE | 32 BayesMallows-2.0.0/BayesMallows/NEWS.md | 13 BayesMallows-2.0.0/BayesMallows/R/BayesMallows.R | 47 BayesMallows-2.0.0/BayesMallows/R/RcppExports.R | 516 ---- BayesMallows-2.0.0/BayesMallows/R/assess_convergence.R | 157 - BayesMallows-2.0.0/BayesMallows/R/assign_cluster.R | 73 BayesMallows-2.0.0/BayesMallows/R/compute_consensus.R | 193 - BayesMallows-2.0.0/BayesMallows/R/compute_mallows.R | 472 ---- BayesMallows-2.0.0/BayesMallows/R/compute_mallows_mixtures.R | 56 BayesMallows-2.0.0/BayesMallows/R/compute_observation_frequency.R |only BayesMallows-2.0.0/BayesMallows/R/compute_posterior_intervals.R | 263 -- BayesMallows-2.0.0/BayesMallows/R/compute_rank_distance.R |only BayesMallows-2.0.0/BayesMallows/R/data.R | 46 BayesMallows-2.0.0/BayesMallows/R/estimate_partition_function.R | 133 - BayesMallows-2.0.0/BayesMallows/R/expected_dist.R | 66 BayesMallows-2.0.0/BayesMallows/R/generate_constraints.R | 30 BayesMallows-2.0.0/BayesMallows/R/generate_initial_ranking.R | 119 - BayesMallows-2.0.0/BayesMallows/R/generate_transitive_closure.R | 101 BayesMallows-2.0.0/BayesMallows/R/get_cardinalities.R |only BayesMallows-2.0.0/BayesMallows/R/get_mallows_loglik.R | 88 BayesMallows-2.0.0/BayesMallows/R/get_transitive_closure.R |only BayesMallows-2.0.0/BayesMallows/R/heat_plot.R | 43 BayesMallows-2.0.0/BayesMallows/R/misc.R | 133 - BayesMallows-2.0.0/BayesMallows/R/plot.R |only BayesMallows-2.0.0/BayesMallows/R/plot_elbow.R | 15 BayesMallows-2.0.0/BayesMallows/R/plot_top_k.R | 92 BayesMallows-2.0.0/BayesMallows/R/predict_top_k.R | 48 BayesMallows-2.0.0/BayesMallows/R/print.R |only BayesMallows-2.0.0/BayesMallows/R/rank_conversion.R | 12 BayesMallows-2.0.0/BayesMallows/R/sample_mallows.R | 24 BayesMallows-2.0.0/BayesMallows/R/set_compute_options.R |only BayesMallows-2.0.0/BayesMallows/R/set_initial_values.R |only BayesMallows-2.0.0/BayesMallows/R/set_model_options.R |only BayesMallows-2.0.0/BayesMallows/R/set_priors.R |only BayesMallows-2.0.0/BayesMallows/R/set_smc_options.R |only BayesMallows-2.0.0/BayesMallows/R/setup_rank_data.R |only BayesMallows-2.0.0/BayesMallows/R/sysdata.rda |binary BayesMallows-2.0.0/BayesMallows/R/tidy_mcmc.R | 88 BayesMallows-2.0.0/BayesMallows/R/update_mallows.R |only BayesMallows-2.0.0/BayesMallows/R/validation_functions.R |only BayesMallows-2.0.0/BayesMallows/build/partial.rdb |binary BayesMallows-2.0.0/BayesMallows/build/vignette.rds |binary BayesMallows-2.0.0/BayesMallows/data/bernoulli_data.rda |only BayesMallows-2.0.0/BayesMallows/data/cluster_data.rda |only BayesMallows-2.0.0/BayesMallows/inst/REFERENCES.bib | 116 - BayesMallows-2.0.0/BayesMallows/inst/doc/BayesMallows.Rmd | 515 ++++ BayesMallows-2.0.0/BayesMallows/inst/doc/BayesMallows.html | 700 ++++++ BayesMallows-2.0.0/BayesMallows/inst/doc/SMC-Mallows.Rmd | 692 ++++-- BayesMallows-2.0.0/BayesMallows/inst/doc/SMC-Mallows.html | 1089 +++------- BayesMallows-2.0.0/BayesMallows/inst/doc/parallel_chains.Rmd | 169 + BayesMallows-2.0.0/BayesMallows/inst/doc/parallel_chains.html | 217 + BayesMallows-2.0.0/BayesMallows/inst/examples/assess_convergence_example.R |only BayesMallows-2.0.0/BayesMallows/inst/examples/compute_consensus_example.R | 51 BayesMallows-2.0.0/BayesMallows/inst/examples/compute_mallows_example.R | 131 - BayesMallows-2.0.0/BayesMallows/inst/examples/compute_mallows_mixtures_example.R | 56 BayesMallows-2.0.0/BayesMallows/inst/examples/compute_observation_frequency_example.R |only BayesMallows-2.0.0/BayesMallows/inst/examples/compute_posterior_intervals_example.R | 28 BayesMallows-2.0.0/BayesMallows/inst/examples/compute_rank_distance_example.R |only BayesMallows-2.0.0/BayesMallows/inst/examples/estimate_partition_function_example.R | 121 - BayesMallows-2.0.0/BayesMallows/inst/examples/expected_dist_example.R | 12 BayesMallows-2.0.0/BayesMallows/inst/examples/get_cardinalities_example.R |only BayesMallows-2.0.0/BayesMallows/inst/examples/get_mallows_loglik_example.R | 6 BayesMallows-2.0.0/BayesMallows/inst/examples/heat_plot_example.R | 12 BayesMallows-2.0.0/BayesMallows/inst/examples/label_switching_example.R | 51 BayesMallows-2.0.0/BayesMallows/inst/examples/plot.BayesMallows_example.R | 56 BayesMallows-2.0.0/BayesMallows/inst/examples/plot_top_k_example.R | 46 BayesMallows-2.0.0/BayesMallows/inst/examples/sample_mallows_example.R | 4 BayesMallows-2.0.0/BayesMallows/inst/examples/update_mallows_example.R |only BayesMallows-2.0.0/BayesMallows/man/BayesMallows-package.Rd |only BayesMallows-2.0.0/BayesMallows/man/assess_convergence.Rd | 59 BayesMallows-2.0.0/BayesMallows/man/assign_cluster.Rd | 53 BayesMallows-2.0.0/BayesMallows/man/beach_preferences.Rd | 5 BayesMallows-2.0.0/BayesMallows/man/bernoulli_data.Rd |only BayesMallows-2.0.0/BayesMallows/man/cluster_data.Rd |only BayesMallows-2.0.0/BayesMallows/man/compute_consensus.Rd | 93 BayesMallows-2.0.0/BayesMallows/man/compute_expected_distance.Rd |only BayesMallows-2.0.0/BayesMallows/man/compute_mallows.Rd | 480 +--- BayesMallows-2.0.0/BayesMallows/man/compute_mallows_mixtures.Rd | 118 - BayesMallows-2.0.0/BayesMallows/man/compute_observation_frequency.Rd |only BayesMallows-2.0.0/BayesMallows/man/compute_posterior_intervals.Rd | 74 BayesMallows-2.0.0/BayesMallows/man/compute_rank_distance.Rd |only BayesMallows-2.0.0/BayesMallows/man/create_ranking.Rd |only BayesMallows-2.0.0/BayesMallows/man/estimate_partition_function.Rd | 194 - BayesMallows-2.0.0/BayesMallows/man/figures/README-unnamed-chunk-5-1.png |binary BayesMallows-2.0.0/BayesMallows/man/figures/README-unnamed-chunk-6-1.png |binary BayesMallows-2.0.0/BayesMallows/man/figures/README-unnamed-chunk-8-1.png |only BayesMallows-2.0.0/BayesMallows/man/get_cardinalities.Rd |only BayesMallows-2.0.0/BayesMallows/man/get_mallows_loglik.Rd | 33 BayesMallows-2.0.0/BayesMallows/man/get_transitive_closure.Rd |only BayesMallows-2.0.0/BayesMallows/man/heat_plot.Rd | 23 BayesMallows-2.0.0/BayesMallows/man/plot.BayesMallows.Rd | 67 BayesMallows-2.0.0/BayesMallows/man/plot.SMCMallows.Rd | 144 - BayesMallows-2.0.0/BayesMallows/man/plot_elbow.Rd | 67 BayesMallows-2.0.0/BayesMallows/man/plot_top_k.Rd | 78 BayesMallows-2.0.0/BayesMallows/man/potato_true_ranking.Rd | 3 BayesMallows-2.0.0/BayesMallows/man/potato_visual.Rd | 6 BayesMallows-2.0.0/BayesMallows/man/potato_weighing.Rd | 6 BayesMallows-2.0.0/BayesMallows/man/predict_top_k.Rd | 61 BayesMallows-2.0.0/BayesMallows/man/print.BayesMallows.Rd | 17 BayesMallows-2.0.0/BayesMallows/man/sample_mallows.Rd | 14 BayesMallows-2.0.0/BayesMallows/man/set_compute_options.Rd |only BayesMallows-2.0.0/BayesMallows/man/set_initial_values.Rd |only BayesMallows-2.0.0/BayesMallows/man/set_model_options.Rd |only BayesMallows-2.0.0/BayesMallows/man/set_priors.Rd |only BayesMallows-2.0.0/BayesMallows/man/set_smc_options.Rd |only BayesMallows-2.0.0/BayesMallows/man/setup_rank_data.Rd |only BayesMallows-2.0.0/BayesMallows/man/sushi_rankings.Rd | 11 BayesMallows-2.0.0/BayesMallows/man/update_mallows.Rd |only BayesMallows-2.0.0/BayesMallows/src/Makevars | 5 BayesMallows-2.0.0/BayesMallows/src/Makevars.win | 13 BayesMallows-2.0.0/BayesMallows/src/RcppExports.cpp | 376 --- BayesMallows-2.0.0/BayesMallows/src/abind.cpp |only BayesMallows-2.0.0/BayesMallows/src/asymptotic_partition_function.cpp |only BayesMallows-2.0.0/BayesMallows/src/augmentation_class.cpp |only BayesMallows-2.0.0/BayesMallows/src/classes.h |only BayesMallows-2.0.0/BayesMallows/src/clustering_class.cpp |only BayesMallows-2.0.0/BayesMallows/src/data_class.cpp |only BayesMallows-2.0.0/BayesMallows/src/distances.cpp | 148 - BayesMallows-2.0.0/BayesMallows/src/distances.h | 133 + BayesMallows-2.0.0/BayesMallows/src/distributions.cpp |only BayesMallows-2.0.0/BayesMallows/src/distributions.h |only BayesMallows-2.0.0/BayesMallows/src/importance_sampling.cpp | 26 BayesMallows-2.0.0/BayesMallows/src/leapandshift.cpp | 40 BayesMallows-2.0.0/BayesMallows/src/leapandshift.h | 13 BayesMallows-2.0.0/BayesMallows/src/missing_data.h | 52 BayesMallows-2.0.0/BayesMallows/src/missing_data_functions.cpp |only BayesMallows-2.0.0/BayesMallows/src/pairwise_comparison_functions.cpp |only BayesMallows-2.0.0/BayesMallows/src/pairwise_comparisons.h | 36 BayesMallows-2.0.0/BayesMallows/src/parameters_class.cpp |only BayesMallows-2.0.0/BayesMallows/src/particles.cpp |only BayesMallows-2.0.0/BayesMallows/src/particles.h |only BayesMallows-2.0.0/BayesMallows/src/partition_functions.cpp |only BayesMallows-2.0.0/BayesMallows/src/partition_functions.h |only BayesMallows-2.0.0/BayesMallows/src/proposal_functions.cpp |only BayesMallows-2.0.0/BayesMallows/src/proposal_functions.h |only BayesMallows-2.0.0/BayesMallows/src/rmallows.cpp | 16 BayesMallows-2.0.0/BayesMallows/src/run_mcmc.cpp | 305 -- BayesMallows-2.0.0/BayesMallows/src/run_smc.cpp |only BayesMallows-2.0.0/BayesMallows/src/smc_augmentation_class.cpp |only BayesMallows-2.0.0/BayesMallows/src/smc_classes.h |only BayesMallows-2.0.0/BayesMallows/src/smc_data_class.cpp |only BayesMallows-2.0.0/BayesMallows/src/smc_parameters_class.cpp |only BayesMallows-2.0.0/BayesMallows/src/subset.cpp | 512 ---- BayesMallows-2.0.0/BayesMallows/tests/testthat.R | 13 BayesMallows-2.0.0/BayesMallows/tests/testthat/_snaps |only BayesMallows-2.0.0/BayesMallows/tests/testthat/test-assess_convergence.R | 255 +- BayesMallows-2.0.0/BayesMallows/tests/testthat/test-assign_cluster.R | 106 BayesMallows-2.0.0/BayesMallows/tests/testthat/test-compute_consensus.R | 251 -- BayesMallows-2.0.0/BayesMallows/tests/testthat/test-compute_mallows.R | 292 -- BayesMallows-2.0.0/BayesMallows/tests/testthat/test-compute_observation_frequency.R |only BayesMallows-2.0.0/BayesMallows/tests/testthat/test-compute_posterior_intervals.R | 170 - BayesMallows-2.0.0/BayesMallows/tests/testthat/test-compute_rank_distance.R |only BayesMallows-2.0.0/BayesMallows/tests/testthat/test-estimate_partition_function.R | 111 - BayesMallows-2.0.0/BayesMallows/tests/testthat/test-expected_dist.R | 42 BayesMallows-2.0.0/BayesMallows/tests/testthat/test-get_cardinalities.R |only BayesMallows-2.0.0/BayesMallows/tests/testthat/test-get_mallows_loglik.R | 12 BayesMallows-2.0.0/BayesMallows/tests/testthat/test-get_transitive_closure.R |only BayesMallows-2.0.0/BayesMallows/tests/testthat/test-heat_plot.R | 38 BayesMallows-2.0.0/BayesMallows/tests/testthat/test-mcmc_correctness.R |only BayesMallows-2.0.0/BayesMallows/tests/testthat/test-misc_functions.R | 2 BayesMallows-2.0.0/BayesMallows/tests/testthat/test-plot.R | 62 BayesMallows-2.0.0/BayesMallows/tests/testthat/test-plot_elbow.R | 59 BayesMallows-2.0.0/BayesMallows/tests/testthat/test-plot_top_k.R | 125 - BayesMallows-2.0.0/BayesMallows/tests/testthat/test-print.R | 43 BayesMallows-2.0.0/BayesMallows/tests/testthat/test-rank_conversion.R | 2 BayesMallows-2.0.0/BayesMallows/tests/testthat/test-sample_mallows.R | 67 BayesMallows-2.0.0/BayesMallows/tests/testthat/test-set_compute_options.R |only BayesMallows-2.0.0/BayesMallows/tests/testthat/test-set_initial_values.R |only BayesMallows-2.0.0/BayesMallows/tests/testthat/test-set_model_options.R |only BayesMallows-2.0.0/BayesMallows/tests/testthat/test-setup_rank_data.R |only BayesMallows-2.0.0/BayesMallows/tests/testthat/test-smc_update_correctness.R |only BayesMallows-2.0.0/BayesMallows/tests/testthat/test-update_mallows.R |only BayesMallows-2.0.0/BayesMallows/vignettes/BayesMallows.Rmd | 515 ++++ BayesMallows-2.0.0/BayesMallows/vignettes/SMC-Mallows.Rmd | 692 ++++-- BayesMallows-2.0.0/BayesMallows/vignettes/cluster_assignment_posterior-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/cluster_elbow-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/cluster_posterior_alpha-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/cluster_posterior_rho-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/cluster_probs_posterior-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/cluster_trace_alpha-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/cluster_trace_probs-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/complete_data_diagnostic_alpha-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/complete_data_diagnostic_rho-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/complete_data_model-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/complete_data_posterior_rho-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/convergence_smc_full-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/convergence_smc_partial-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/parallel_assess_converge_prefs_alpha-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/parallel_assess_converge_prefs_rho-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/parallel_assess_convergence_alpha-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/parallel_assess_convergence_prefs_rtilde-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/parallel_assess_convergence_rho-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/parallel_beach_prefs_alpha_posterior-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/parallel_beach_prefs_rho_posterior-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/parallel_chains.Rmd | 169 + BayesMallows-2.0.0/BayesMallows/vignettes/parallel_posterior_alpha-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/parallel_posterior_rho-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/parallel_top_k-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/plot_smc_complete-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/preferences_alpha_trace-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/preferences_augmented_rankings-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/preferences_augmented_rankings_free-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/preferences_augmented_rankings_many-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/preferences_rho_trace-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/preferences_top_k-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/smc_complete_mod_bmm-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/smc_complete_model2-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/smc_complete_model2_alpha-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/smc_complete_model3-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/smc_complete_model4_alpha-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/smc_complete_model4_rho-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/smc_init_posterior_partial-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/smc_second_updated_posterior_partial-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/smc_updated_posterior_partial-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/sushi_updated_batch1_burnin-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/sushi_updated_batch1_posterior-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/sushi_updated_batch2_posterior-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/sushi_updated_batch3_posterior-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/sushi_updated_batch4_posterior-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/sushi_updated_bmm_posterior-1.png |only BayesMallows-2.0.0/BayesMallows/vignettes/sushi_updated_burnin-1.png |only 329 files changed, 6989 insertions(+), 6703 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-22 0.9.4
2021-02-27 0.9.3
2020-10-13 0.9.2
2020-04-02 0.9.1
2019-01-24 0.9.0
2017-11-14 0.7.0
2016-12-07 0.5.1
2015-08-09 0.4.0
Title: Methods for Visualization of Computer Experiments Design and
Surrogate
Description: View 2D/3D sections, contour plots, mesh of excursion sets for computer experiments designs, surrogates or test functions.
Author: Yann Richet [aut, cre] ,
Yves Deville [aut],
Clement Chevalier [ctb]
Maintainer: Yann Richet <yann.richet@irsn.fr>
Diff between DiceView versions 2.1-0 dated 2023-01-16 and 2.2-0 dated 2024-01-15
DESCRIPTION | 16 - MD5 | 27 +- NAMESPACE | 3 R/contourview.R | 8 R/mesh_set.R | 506 ++++++----------------------------------------------- R/optim.R |only R/root.R |only R/sectionview.R | 8 R/sectionview3d.R | 8 README.md | 10 - man/mesh_exsets.Rd | 2 man/mesh_roots.Rd | 2 man/min_dist.Rd | 2 man/optims.Rd |only man/root.Rd | 43 ++++ man/roots.Rd | 8 16 files changed, 160 insertions(+), 483 deletions(-)
Title: Generalized Reporter Score-Based Enrichment Analysis for Omics
Data
Description: Inspired by the classic 'RSA', we developed the improved 'Generalized Reporter
Score-based Analysis (GRSA)' method, implemented in the R package 'ReporterScore', along
with comprehensive visualization methods and pathway databases. 'GRSA' is a threshold-free
method that works well with all types of biomedical features, such as genes, chemical compounds,
and microbial species. Importantly, the 'GRSA' supports multi-group and longitudinal experimental
designs, because of the included multi-group-compatible statistical methods.
Author: Chen Peng [aut, cre]
Maintainer: Chen Peng <pengchen2001@zju.edu.cn>
Diff between ReporterScore versions 0.1.1 dated 2024-01-12 and 0.1.2 dated 2024-01-15
ReporterScore-0.1.1/ReporterScore/NEWS |only ReporterScore-0.1.2/ReporterScore/DESCRIPTION | 8 ReporterScore-0.1.2/ReporterScore/MD5 | 20 - ReporterScore-0.1.2/ReporterScore/NAMESPACE | 2 ReporterScore-0.1.2/ReporterScore/R/calculation.R | 27 - ReporterScore-0.1.2/ReporterScore/R/check_files.R | 50 +-- ReporterScore-0.1.2/ReporterScore/R/enrichment.R | 4 ReporterScore-0.1.2/ReporterScore/R/plot.R | 141 ++++++++-- ReporterScore-0.1.2/ReporterScore/inst/doc/ReporterScore.html | 2 ReporterScore-0.1.2/ReporterScore/man/load_htable.Rd | 2 ReporterScore-0.1.2/ReporterScore/man/plot_KEGG_map.Rd | 4 ReporterScore-0.1.2/ReporterScore/man/plot_features_network.Rd |only 12 files changed, 185 insertions(+), 75 deletions(-)
Title: Native Access Medical Record Retriever for High Yield Analytics
Description: A toolkit for medical records data analysis. The 'naryn'
package implements an efficient data structure for storing medical
records, and provides a set of functions for data extraction,
manipulation and analysis.
Author: Misha Hoichman [aut],
Aviezer Lifshitz [aut, cre],
Ben Gilat [aut],
Netta Mendelson-Cohen [ctb],
Rami Jaschek [ctb],
Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between naryn versions 2.6.25 dated 2023-11-30 and 2.6.26 dated 2024-01-15
DESCRIPTION | 6 MD5 | 16 NEWS.md | 4 build/vignette.rds |binary inst/doc/advanced.R | 2 inst/doc/advanced.html | 1011 +++++++++++++++++++++-------- src/NRTest.cpp | 1686 ++++++++++++++++++++++++------------------------- src/naryn-init.cpp | 6 tests/spelling.R | 9 9 files changed, 1607 insertions(+), 1133 deletions(-)
Title: Tools for Analyzing Time Series Data of Just Finance and
Econometrics
Description: Offers procedures to support financial and economic time series modelling and enhanced procedures for computing the investment performance indices of Bacon (2004) <DOI:10.1002/9781119206309>.
Author: Ho Tsung-wu
Maintainer: Ho Tsung-wu <tsungwu@ntnu.edu.tw>
Diff between JFE versions 2.5.5 dated 2023-08-27 and 2.5.6 dated 2024-01-15
JFE-2.5.5/JFE/R/01utilities.R |only JFE-2.5.5/JFE/R/02price.R |only JFE-2.5.5/JFE/R/03returns.R |only JFE-2.5.5/JFE/R/04assetsSelection.R |only JFE-2.5.5/JFE/R/05Portfolio.R |only JFE-2.5.5/JFE/R/05PortoflioMore.R |only JFE-2.5.5/JFE/R/06GARCH.R |only JFE-2.5.5/JFE/R/07dataDownload.R |only JFE-2.5.5/JFE/R/JFE.R |only JFE-2.5.5/JFE/data/macrodata.rda |only JFE-2.5.5/JFE/man/JFE.Rd |only JFE-2.5.5/JFE/man/getTWSE.fiveSecond.Rd |only JFE-2.5.5/JFE/man/riskOptimalPortfolio.Rd |only JFE-2.5.5/JFE/man/riskParityPortfolio.Rd |only JFE-2.5.6/JFE/DESCRIPTION | 18 ++++++++---------- JFE-2.5.6/JFE/MD5 | 21 ++++----------------- JFE-2.5.6/JFE/NAMESPACE | 9 ++++----- JFE-2.5.6/JFE/R/dataDownload.R |only JFE-2.5.6/JFE/man/data-sets.Rd | 3 +-- 19 files changed, 17 insertions(+), 34 deletions(-)
Title: Spatially Explicit Capture-Recapture by Inverse Prediction
Description: Estimates the density of a spatially distributed animal population
sampled with an array of passive detectors, such as traps. Models incorporating
distance-dependent detection are fitted by simulation and inverse prediction
as proposed by Efford (2004) <doi:10.1111/j.0030-1299.2004.13043.x>.
Author: Murray Efford [aut, cre]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between ipsecr versions 1.4.0 dated 2023-01-13 and 1.4.1 dated 2024-01-15
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS | 8 ++++++++ R/utility.R | 4 ++-- build/vignette.rds |binary inst/CITATION | 5 +++-- inst/doc/ipsecr-vignette.pdf |binary man/ipsecr-package.Rd | 4 ++-- man/predict.ipsecr.Rd | 2 +- src/Makevars | 3 ++- src/Makevars.win | 3 ++- 11 files changed, 34 insertions(+), 23 deletions(-)
Title: Bayesian Projected Normal Regression Models for Circular Data
Description: Fitting Bayesian multiple and mixed-effect regression models for
circular data based on the projected normal distribution. Both continuous
and categorical predictors can be included. Sampling from the posterior is
performed via an MCMC algorithm. Posterior descriptives of all parameters,
model fit statistics and Bayes factors for hypothesis tests for inequality
constrained hypotheses are provided. See Cremers, Mulder & Klugkist (2018)
<doi:10.1111/bmsp.12108> and Nuñez-Antonio & Guttiérez-Peña (2014)
<doi:10.1016/j.csda.2012.07.025>.
Author: Jolien Cremers [aut, cre]
Maintainer: Jolien Cremers <joliencremers@gmail.com>
Diff between bpnreg versions 2.0.2 dated 2021-08-06 and 2.0.3 dated 2024-01-15
bpnreg-2.0.2/bpnreg/R/bpnreg.R |only bpnreg-2.0.2/bpnreg/man/bpnreg.Rd |only bpnreg-2.0.3/bpnreg/DESCRIPTION | 8 bpnreg-2.0.3/bpnreg/MD5 | 57 +- bpnreg-2.0.3/bpnreg/NEWS.md | 10 bpnreg-2.0.3/bpnreg/R/RcppExports.R | 36 - bpnreg-2.0.3/bpnreg/R/bpnreg-package.R |only bpnreg-2.0.3/bpnreg/R/lme4code.R | 31 - bpnreg-2.0.3/bpnreg/README.md | 74 +- bpnreg-2.0.3/bpnreg/build/partial.rdb |binary bpnreg-2.0.3/bpnreg/build/vignette.rds |binary bpnreg-2.0.3/bpnreg/inst/doc/FAQ.html | 738 +++++++++++++++++++-------- bpnreg-2.0.3/bpnreg/man/RHSForm-set.Rd | 3 bpnreg-2.0.3/bpnreg/man/RHSForm.Rd | 2 bpnreg-2.0.3/bpnreg/man/anyBars.Rd | 2 bpnreg-2.0.3/bpnreg/man/b_samp.Rd | 4 bpnreg-2.0.3/bpnreg/man/betaBlock.Rd | 4 bpnreg-2.0.3/bpnreg/man/bpnreg-package.Rd |only bpnreg-2.0.3/bpnreg/man/expandDoubleVerts.Rd | 3 bpnreg-2.0.3/bpnreg/man/findbars.Rd | 2 bpnreg-2.0.3/bpnreg/man/isAnyArgBar.Rd | 2 bpnreg-2.0.3/bpnreg/man/isBar.Rd | 2 bpnreg-2.0.3/bpnreg/man/lik_me.Rd |only bpnreg-2.0.3/bpnreg/man/nobars.Rd | 2 bpnreg-2.0.3/bpnreg/man/nobars_.Rd | 2 bpnreg-2.0.3/bpnreg/man/reOnly.Rd | 2 bpnreg-2.0.3/bpnreg/man/safeDeparse.Rd | 2 bpnreg-2.0.3/bpnreg/man/subbars.Rd | 2 bpnreg-2.0.3/bpnreg/src/Makevars | 3 bpnreg-2.0.3/bpnreg/src/Makevars.win | 2 bpnreg-2.0.3/bpnreg/src/RcppExports.cpp | 5 bpnreg-2.0.3/bpnreg/src/me.cpp | 5 32 files changed, 665 insertions(+), 338 deletions(-)
Title: Kernel Smoothing
Description: Kernel smoothers for univariate and multivariate data, with comprehensive visualisation and bandwidth selection capabilities, including for densities, density derivatives, cumulative distributions, clustering, classification, density ridges, significant modal regions, and two-sample hypothesis tests. Chacon & Duong (2018) <doi:10.1201/9780429485572>.
Author: Tarn Duong [aut, cre] ,
Matt Wand [ctb] ,
Jose Chacon [ctb],
Artur Gramacki [ctb]
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between ks versions 1.14.1 dated 2023-08-10 and 1.14.2 dated 2024-01-15
CHANGELOG | 4 ++++ DESCRIPTION | 12 ++++++------ MD5 | 30 +++++++++++++++--------------- NAMESPACE | 2 +- R/kcde.R | 1 + R/kda.R | 5 +++-- R/kde-test.R | 5 ++++- R/kde.R | 2 +- R/kdr.R | 1 + R/kms.R | 1 + R/ksupp.R | 6 +++++- R/prelim.R | 9 ++++++++- build/vignette.rds |binary inst/doc/kde.pdf |binary man/ks-package.Rd | 21 +++++++++------------ man/ksupp.Rd | 3 +-- 16 files changed, 60 insertions(+), 42 deletions(-)
Title: Model Diagnostics for Accelerated Failure Time Models
Description: A collection of model checking methods for semiparametric accelerated
failure time (AFT) models under the rank-based approach. For the (computational)
efficiency, Gehan's weight is used. It provides functions to verify whether the
observed data fit the specific model assumptions such as a functional form of
each covariate, a link function, and an omnibus test. The p-value offered in this
package is based on the Kolmogorov-type supremum test and the variance of the
proposed test statistics is estimated through the re-sampling method. Furthermore,
a graphical technique to compare the shape of the observed residual to a number of
the approximated realizations is provided.
Author: Woojung Bae [aut, cre] ,
Dongrak Choi [aut] ,
Jun Yan [aut] ,
Sangwook Kang [aut]
Maintainer: Woojung Bae <matt.woojung@gmail.com>
Diff between afttest versions 4.3.2.1 dated 2023-12-20 and 4.3.2.2 dated 2024-01-15
DESCRIPTION | 10 +++--- MD5 | 22 ++++++------- NAMESPACE | 1 R/afttest.R | 55 +++++++++++++++++++++++++++------- R/afttestplot.R | 66 ++++++++++------------------------------- R/generic.R | 60 +++++++++++++++++++++++++++---------- inst/examples/ex_afttest.R | 12 ++----- inst/examples/ex_afttestplot.R | 13 +++----- man/afttest.Rd | 16 ++++----- man/afttestplot.Rd | 41 ++----------------------- man/print.afttest.Rd | 12 ++----- man/summary.afttest.Rd | 12 ++----- 12 files changed, 152 insertions(+), 168 deletions(-)