Title: Penalized Multivariate Analysis
Description: Performs Penalized Multivariate Analysis: a penalized
matrix decomposition, sparse principal components analysis,
and sparse canonical correlation analysis, described in
Witten, Tibshirani and Hastie (2009)
<doi:10.1093/biostatistics/kxp008> and Witten and Tibshirani
(2009) Extensions of sparse canonical correlation analysis,
with applications to genomic data
<doi:10.2202/1544-6115.1470>.
Author: Daniela Witten [aut],
Rob Tibshirani [aut],
Sam Gross [aut],
Balasubramanian Narasimhan [cre, aut]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between PMA versions 1.2-2 dated 2023-07-20 and 1.2-3 dated 2024-02-06
DESCRIPTION | 18 +++++++++--------- MD5 | 8 ++++---- NEWS.md | 5 +++++ build/partial.rdb |binary src/FLSAGeneral.cc | 3 ++- 5 files changed, 20 insertions(+), 14 deletions(-)
Title: Model Selection with Bayesian Methods and Information Criteria
Description: Model selection and averaging for regression and mixtures, inclusing Bayesian model selection and information criteria (BIC, EBIC, AIC, GIC).
Author: David Rossell, John D. Cook, Donatello Telesca, P. Roebuck, Oriol Abril, Miquel Torrens
Maintainer: David Rossell <rosselldavid@gmail.com>
Diff between mombf versions 3.5.2 dated 2024-01-29 and 3.5.4 dated 2024-02-06
mombf-3.5.2/mombf/src/do_mombf.h |only mombf-3.5.4/mombf/ChangeLog | 7 mombf-3.5.4/mombf/DESCRIPTION | 8 mombf-3.5.4/mombf/MD5 | 43 +- mombf-3.5.4/mombf/R/RcppExports.R | 68 +++ mombf-3.5.4/mombf/R/gam.R | 3 mombf-3.5.4/mombf/R/modelSelection.R | 6 mombf-3.5.4/mombf/R/nlpMarginal.R | 13 mombf-3.5.4/mombf/R/normmix.R | 3 mombf-3.5.4/mombf/R/rmom.R | 15 mombf-3.5.4/mombf/R/testfunction.R | 3 mombf-3.5.4/mombf/inst/doc/mombf.pdf |binary mombf-3.5.4/mombf/src/RcppExports.cpp | 535 ++++++++++++++++++++++++-- mombf-3.5.4/mombf/src/cstat.cpp | 9 mombf-3.5.4/mombf/src/cstat.h | 20 mombf-3.5.4/mombf/src/ggm.cpp | 35 - mombf-3.5.4/mombf/src/mixtures.cpp | 1 mombf-3.5.4/mombf/src/mixtures.h | 6 mombf-3.5.4/mombf/src/modelSel_regression.cpp | 13 mombf-3.5.4/mombf/src/modelSel_regression.h | 30 - mombf-3.5.4/mombf/src/modselIntegrals.cpp | 2 mombf-3.5.4/mombf/src/nlpMarg.cpp | 3 mombf-3.5.4/mombf/src/nlpMarg.h | 4 23 files changed, 690 insertions(+), 137 deletions(-)
Title: Write Reusable, Composable and Modular R Code
Description: A modern module system for R. Organise code into hierarchical,
composable, reusable modules, and use it effortlessly across projects via a
flexible, declarative dependency loading syntax.
Author: Konrad Rudolph [aut, cre] ,
Michael Schubert [ctb]
Maintainer: Konrad Rudolph <konrad.rudolph@gmail.com>
Diff between box versions 1.1.3 dated 2023-05-02 and 1.2.0 dated 2024-02-06
DESCRIPTION | 10 +-- LICENSE | 2 MD5 | 103 +++++++++++++++++++------------------- NEWS.md | 18 ++++++ R/S3.r | 30 +++++++---- R/backports.r | 21 +++++-- R/box-package.r | 10 ++- R/default.r | 2 R/env.r | 13 +++- R/errors.r | 2 R/export.r | 12 ++-- R/file.r | 3 - R/format.r | 5 - R/help.r | 4 - R/info.r | 4 - R/paths.r | 14 ++--- R/spec.r | 20 +++---- R/typing.r |only R/unload.r | 4 - R/use.r | 14 ++++- build/vignette.rds |binary inst/doc/bio/seq.r | 2 inst/doc/box.html | 29 +++++----- inst/doc/box.rmd | 28 +++++----- inst/doc/compiled-code.html | 8 +- inst/doc/contributing.R |only inst/doc/contributing.html |only inst/doc/contributing.rmd |only inst/doc/faq.html | 26 ++++----- inst/doc/faq.rmd | 20 +++---- inst/doc/migration.html | 12 ++-- inst/doc/mod-env-hierarchy.html | 6 +- inst/doc/related.html | 24 +++----- inst/doc/related.rmd | 21 ++----- inst/doc/testing.html | 6 +- man/box.Rd | 2 man/file.Rd | 4 - man/info.Rd | 7 +- man/namespace.Rd | 8 ++ man/path.Rd | 3 - man/register_S3_method.Rd | 17 +++--- man/use.Rd | 10 +++ src/lookup.c | 8 +- tests/testthat/helper-callr.r | 42 +++++++++------ tests/testthat/helper-expect.r | 2 tests/testthat/mod/s3.r | 4 + tests/testthat/support/rprofile.r | 51 +++++++++++------- tests/testthat/test-S3.r | 8 ++ tests/testthat/test-basic.r | 14 +++++ tests/testthat/test-file.r | 4 + vignettes/bio/seq.r | 2 vignettes/box.rmd | 28 +++++----- vignettes/contributing.rmd |only vignettes/faq.rmd | 20 +++---- vignettes/related.rmd | 21 ++----- 55 files changed, 418 insertions(+), 310 deletions(-)
Title: Use 'QGIS' Processing Algorithms
Description: Provides seamless access to the 'QGIS'
(<https://qgis.org/en/site/>) processing toolbox using the standalone
'qgis_process' command-line utility. Both native and third-party
(plugin) processing providers are supported. Beside referring data
sources from file, also common objects from 'sf', 'terra' and 'stars'
are supported. The native processing algorithms are documented by QGIS.org
(2023) <https://docs.qgis.org/latest/en/docs/user_manual/processing_algs/>.
Author: Dewey Dunnington [aut] ,
Floris Vanderhaeghe [aut, cre]
),
Jan Caha [aut] ,
Jannes Muenchow [aut] ,
Antony Barja [ctb] ,
Robin Lovelace [ctb] ,
Jakub Nowosad [ctb] ,
Research Institute for Nature and Forest [cph, fnd]
Maintainer: Floris Vanderhaeghe <floris.vanderhaeghe@inbo.be>
Diff between qgisprocess versions 0.2.0 dated 2023-12-20 and 0.3.0 dated 2024-02-06
DESCRIPTION | 10 - MD5 | 60 +++---- NAMESPACE | 1 NEWS.md | 18 ++ R/compat-sf.R | 3 R/compat-stars.R | 3 R/qgis-algorithms.R | 64 +++++++- R/qgis-arguments.R | 13 + R/qgis-configure.R | 68 ++++++-- R/qgis-function.R | 2 R/qgis-help.R | 32 ++-- R/qgis-output.R | 4 R/qgis-state.R | 246 ++++++++++++++++++++++++++----- R/qgisprocess-package.R | 1 inst/CITATION | 6 inst/doc/qgis_expressions.html | 108 ++++++++----- inst/doc/qgisprocess.html | 142 +++++++++++------ man/qgis_algorithms.Rd | 12 + man/qgis_list_input.Rd | 4 man/qgis_search_algorithms.Rd | 9 + man/qgis_show_help.Rd | 6 man/qgis_using_json_input.Rd | 39 ++++ man/st_as_sf.Rd | 10 - man/st_as_stars.Rd | 10 - tests/testthat/test-compat-sf.R | 22 ++ tests/testthat/test-compat-terra.R | 42 ++++- tests/testthat/test-qgis-algorithms.R | 23 ++ tests/testthat/test-qgis-configure.R | 219 +++++++++++++++++++++++++++ tests/testthat/test-qgis-help.R | 30 +++ tests/testthat/test-qgis-run-algorithm.R | 27 +++ tests/testthat/test-qgis-state.R | 158 +++++++++++++++++++ 31 files changed, 1141 insertions(+), 251 deletions(-)
Title: Management Strategy Evaluation Toolkit
Description: Development, simulation testing, and implementation of management procedures for fisheries
(see Carruthers & Hordyk (2018) <doi:10.1111/2041-210X.13081>).
Author: Adrian Hordyk [aut, cre],
Quang Huynh [aut],
Tom Carruthers [aut],
Chris Grandin [ctb]
Maintainer: Adrian Hordyk <adrian@bluematterscience.com>
Diff between MSEtool versions 3.7.0 dated 2023-07-19 and 3.7.1 dated 2024-02-06
DESCRIPTION | 6 - MD5 | 67 ++++++++-------- NAMESPACE | 4 NEWS.md | 11 ++ R/Class_definitions.R | 6 - R/DFO.R | 2 R/Data_fit_index.R | 11 ++ R/Data_make_update.R | 42 +++++++--- R/Misc_Internal.R | 1 R/Movement_calcs.R | 135 ++++++++++++++++++++++++++++++++ R/OM_functions.R | 6 + R/OM_init_doc.R | 12 +- R/RcppExports.R | 1 R/SampleOM.R | 71 +++++++++++------ R/aaImportFrom.R | 2 R/applyMMP.R | 13 ++- R/multiMSE.R | 131 +++++++++++++++++++++++-------- R/multi_q_estimation.R | 9 +- R/popdyn.R | 190 ++++++++++++++++++++++++++-------------------- R/popdyn_MICE.R | 15 ++- R/runMSE.R | 159 ++++++++++++++++++++++---------------- man/CalcAsymptoticDist.Rd |only man/CalcMPDynamics.Rd | 48 ++++------- man/MSYCalcs.Rd | 128 +++++++++++++++--------------- man/OMinit.Rd | 6 - man/applyMMP.Rd | 11 ++ man/makemov2.Rd |only man/multiMSE.Rd | 2 man/popdynCPP.Rd | 2 man/popdynOneMICE.Rd | 6 + man/qestMICE.Rd | 12 ++ man/runCOSEWIC.Rd | 2 man/simCAL.Rd | 3 man/simmov2.Rd |only src/genLenComp.cpp | 39 ++++++++- src/popddynCPP.cpp | 1 36 files changed, 758 insertions(+), 396 deletions(-)
Title: Pre-Compiled 'CmdStan' Models in R Packages
Description: Similar to 'rstantools' for 'rstan',
the 'instantiate' package builds pre-compiled
'CmdStan' models into CRAN-ready statistical modeling R packages.
The models compile once during installation,
the executables live inside the file systems of their respective packages,
and users have the full power and convenience of
'cmdstanr' without any additional compilation after package installation.
This approach saves time and helps R package developers
migrate from 'rstan' to the more modern 'cmdstanr'.
Packages 'rstantools', 'cmdstanr', 'stannis', and
'stanapi' are similar Stan clients with different objectives.
Author: William Michael Landau [aut, cre]
,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between instantiate versions 0.2.0 dated 2024-01-09 and 0.2.1 dated 2024-02-06
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/stan_package.R | 2 +- R/stan_package_configure.R | 4 ++-- inst/configuration/install.libs.R | 9 +++++++-- man/instantiate-package.Rd | 1 - 8 files changed, 27 insertions(+), 18 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative pipelines for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible pipelines concisely and compactly.
The methods in this package were influenced by the 'drake' R package
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre]
,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between tarchetypes versions 0.7.11 dated 2024-01-09 and 0.7.12 dated 2024-02-06
DESCRIPTION | 8 +-- MD5 | 110 +++++++++++++++++++++--------------------- NAMESPACE | 1 NEWS.md | 4 + R/tar_package.R | 3 - man/tar_age.Rd | 13 +++- man/tar_change.Rd | 16 ++++-- man/tar_combine.Rd | 34 +++++++----- man/tar_combine_raw.Rd | 34 +++++++----- man/tar_cue_force.Rd | 2 man/tar_cue_skip.Rd | 2 man/tar_download.Rd | 16 ++++-- man/tar_eval.Rd | 4 - man/tar_eval_raw.Rd | 4 - man/tar_file_read.Rd | 11 ++-- man/tar_files.Rd | 18 ++++-- man/tar_files_input.Rd | 4 - man/tar_files_input_raw.Rd | 4 - man/tar_files_raw.Rd | 20 ++++--- man/tar_force.Rd | 16 ++++-- man/tar_formats.Rd | 16 ++++-- man/tar_group_by.Rd | 11 ++-- man/tar_group_count.Rd | 11 ++-- man/tar_group_select.Rd | 11 ++-- man/tar_group_size.Rd | 11 ++-- man/tar_knit.Rd | 19 ++++--- man/tar_knit_raw.Rd | 19 ++++--- man/tar_map.Rd | 18 +++--- man/tar_map2.Rd | 29 ++++++----- man/tar_map2_count.Rd | 29 ++++++----- man/tar_map2_count_raw.Rd | 29 ++++++----- man/tar_map2_raw.Rd | 31 ++++++----- man/tar_map2_size.Rd | 29 ++++++----- man/tar_map2_size_raw.Rd | 29 ++++++----- man/tar_map_rep.Rd | 29 ++++++----- man/tar_map_rep_raw.Rd | 29 ++++++----- man/tar_quarto.Rd | 19 ++++--- man/tar_quarto_files.Rd | 4 - man/tar_quarto_raw.Rd | 21 ++++---- man/tar_quarto_rep.Rd | 19 ++++--- man/tar_quarto_rep_raw.Rd | 19 ++++--- man/tar_render.Rd | 21 ++++---- man/tar_render_raw.Rd | 21 ++++---- man/tar_render_rep.Rd | 21 ++++---- man/tar_render_rep_raw.Rd | 21 ++++---- man/tar_rep.Rd | 27 +++++----- man/tar_rep2.Rd | 34 +++++++----- man/tar_rep2_raw.Rd | 34 +++++++----- man/tar_rep_map.Rd | 34 +++++++----- man/tar_rep_map_raw.Rd | 34 +++++++----- man/tar_rep_raw.Rd | 34 +++++++----- man/tar_skip.Rd | 16 ++++-- man/tar_sub.Rd | 2 man/tar_sub_raw.Rd | 2 man/tarchetypes-package.Rd | 1 tests/testthat/test-tar_rep.R | 28 ---------- 56 files changed, 609 insertions(+), 477 deletions(-)
Title: 'Shiny' Application for Olympic Data
Description: 'Shiny' Application to visualize Olympic Data. From 1896 to
2016. Even Winter Olympics events are included. Data is from Kaggle at
<https://www.kaggle.com/heesoo37/120-years-of-olympic-history-athletes-and-results>.
Author: Amalan Mahendran [cre, aut]
Maintainer: Amalan Mahendran <amalan0595@gmail.com>
Diff between OlympicRshiny versions 1.0.0 dated 2023-02-02 and 1.0.1 dated 2024-02-06
DESCRIPTION | 13 ++++++------- MD5 | 14 +++++++------- NAMESPACE | 2 ++ R/app_server.R | 5 ++++- R/app_ui.R | 11 ++++++++--- R/run_app.R | 7 ++++++- data/Olympic.rda |binary inst/golem-config.yml | 4 ++-- 8 files changed, 35 insertions(+), 21 deletions(-)
Title: Keep Track of Dates in Terms of Months
Description: Keep track of dates in terms of fractional calendar months
per Damien Laker "Time Calculations for Annualizing Returns: the Need for Standardization",
The Journal of Performance Measurement, 2008.
Model dates as of close of business.
Perform date arithmetic in units of "months" and "years".
Allow "infinite" dates to model "ultimate" time.
Author: Dan Murphy
Maintainer: Dan Murphy <chiefmurphy@gmail.com>
Diff between mondate versions 0.10.02 dated 2021-01-29 and 1.0 dated 2024-02-06
DESCRIPTION | 8 +++--- MD5 | 8 +++--- NEWS | 60 +++++++++++++++++++++++----------------------------- man/as.difftime.rd | 9 +++++-- man/year-methods.Rd | 2 - 5 files changed, 42 insertions(+), 45 deletions(-)
Title: Tipping Point Analyses
Description: The strength of evidence provided by epidemiological and
observational studies is inherently limited by the potential for
unmeasured confounding. We focus on three key quantities: the
observed bound of the confidence interval closest to the null, the
relationship between an unmeasured confounder and the outcome, for
example a plausible residual effect size for an unmeasured continuous
or binary confounder, and the relationship between an unmeasured
confounder and the exposure, for example a realistic mean difference
or prevalence difference for this hypothetical confounder between
exposure groups. Building on the methods put forth by Cornfield et al.
(1959), Bross (1966), Schlesselman (1978), Rosenbaum & Rubin (1983),
Lin et al. (1998), Lash et al. (2009), Rosenbaum (1986), Cinelli &
Hazlett (2020), VanderWeele & Ding (2017), and Ding & VanderWeele
(2016), we can use these quantities to assess how an unmeasured
confounder may tip our result to insignificance.
Author: Lucy D'Agostino McGowan [aut, cre]
,
Malcolm Barrett [aut]
Maintainer: Lucy D'Agostino McGowan <lucydagostino@gmail.com>
Diff between tipr versions 1.0.1 dated 2022-09-05 and 1.0.2 dated 2024-02-06
tipr-1.0.1/tipr/man/tipr.Rd |only tipr-1.0.2/tipr/DESCRIPTION | 61 ++-- tipr-1.0.2/tipr/MD5 | 69 ++--- tipr-1.0.2/tipr/NEWS.md | 6 tipr-1.0.2/tipr/R/adjust_coef_with_r2.R | 2 tipr-1.0.2/tipr/R/adjust_coefficient.R | 261 +++++++++++--------- tipr-1.0.2/tipr/R/observed-bias-plot-helpers.R | 4 tipr-1.0.2/tipr/R/observed_covariate_e_value.R | 6 tipr-1.0.2/tipr/R/tip-helpers.R | 281 ++++++++++------------ tipr-1.0.2/tipr/R/tip.R | 171 ++++++++----- tipr-1.0.2/tipr/R/tip_coef.R | 111 ++++---- tipr-1.0.2/tipr/R/tip_coef_with_r2.R | 2 tipr-1.0.2/tipr/R/tip_with_binary.R | 185 +++++++++----- tipr-1.0.2/tipr/R/tipr-package.R | 19 - tipr-1.0.2/tipr/R/utils.R | 69 ++++- tipr-1.0.2/tipr/README.md | 141 ++++++----- tipr-1.0.2/tipr/man/adjust_coef.Rd | 4 tipr-1.0.2/tipr/man/adjust_coef_with_binary.Rd | 32 +- tipr-1.0.2/tipr/man/adjust_coef_with_r2.Rd | 2 tipr-1.0.2/tipr/man/adjust_hr.Rd | 4 tipr-1.0.2/tipr/man/adjust_hr_with_binary.Rd | 2 tipr-1.0.2/tipr/man/adjust_or.Rd | 4 tipr-1.0.2/tipr/man/adjust_or_with_binary.Rd | 2 tipr-1.0.2/tipr/man/adjust_rr_with_binary.Rd | 2 tipr-1.0.2/tipr/man/figures |only tipr-1.0.2/tipr/man/tip.Rd | 6 tipr-1.0.2/tipr/man/tip_coef.Rd | 4 tipr-1.0.2/tipr/man/tip_coef_with_r2.Rd | 2 tipr-1.0.2/tipr/man/tip_hr.Rd | 4 tipr-1.0.2/tipr/man/tip_hr_with_binary.Rd | 2 tipr-1.0.2/tipr/man/tip_or.Rd | 4 tipr-1.0.2/tipr/man/tip_or_with_binary.Rd | 2 tipr-1.0.2/tipr/man/tip_rr.Rd | 4 tipr-1.0.2/tipr/man/tip_rr_with_binary.Rd | 2 tipr-1.0.2/tipr/man/tip_with_binary.Rd | 4 tipr-1.0.2/tipr/man/tipr-package.Rd |only tipr-1.0.2/tipr/tests/testthat/test-tip-helpers.R | 3 37 files changed, 856 insertions(+), 621 deletions(-)
Title: Design of Experiments Suite: Generate and Evaluate Optimal
Designs
Description: Generates and evaluates D, I, A, Alias, E, T, and G optimal designs. Supports generation and evaluation of blocked and split/split-split/.../N-split plot designs. Includes parametric and Monte Carlo power evaluation functions, and supports calculating power for censored responses. Provides a framework to evaluate power using functions provided in other packages or written by the user. Includes a Shiny graphical user interface that displays the underlying code used to create and evaluate the design to improve ease-of-use and make analyses more reproducible. For details, see Morgan-Wall et al. (2021) <doi:10.18637/jss.v099.i01>.
Author: Tyler Morgan-Wall [aut, cre],
George Khoury [aut]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between skpr versions 1.6.1 dated 2023-12-07 and 1.6.2 dated 2024-02-06
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/eval_design_survival_mc.R | 2 +- R/gen_design.R | 16 ++++++++++++++-- man/eval_design_survival_mc.Rd | 2 +- 5 files changed, 24 insertions(+), 12 deletions(-)
Title: Network Analysis and Causal Inference Through Structural
Equation Modeling
Description: Estimate networks and causal relationships in complex systems through
Structural Equation Modeling. This package also includes functions to import,
weight, manipulate, and fit biological network models within the
Structural Equation Modeling framework proposed in
Grassi M, Palluzzi F, Tarantino B (2022) <doi:10.1093/bioinformatics/btac567>.
Author: Mario Grassi [aut],
Fernando Palluzzi [aut],
Barbara Tarantino [aut, cre]
Maintainer: Barbara Tarantino <barbara.tarantino01@universitadipavia.it>
Diff between SEMgraph versions 1.2.0 dated 2023-05-04 and 1.2.1 dated 2024-02-06
SEMgraph-1.2.0/SEMgraph/R/semWeights.R |only SEMgraph-1.2.1/SEMgraph/DESCRIPTION | 20 +- SEMgraph-1.2.1/SEMgraph/MD5 | 70 ++++----- SEMgraph-1.2.1/SEMgraph/NAMESPACE | 5 SEMgraph-1.2.1/SEMgraph/NEWS.md | 14 + SEMgraph-1.2.1/SEMgraph/R/ALSdata.R | 4 SEMgraph-1.2.1/SEMgraph/R/keggInteractome.R | 12 - SEMgraph-1.2.1/SEMgraph/R/keggPathways.R | 8 - SEMgraph-1.2.1/SEMgraph/R/semCluster.R | 12 - SEMgraph-1.2.1/SEMgraph/R/semFit.R | 68 ++++----- SEMgraph-1.2.1/SEMgraph/R/semLearn.R | 167 ++++++++++++----------- SEMgraph-1.2.1/SEMgraph/R/semPaths.R | 4 SEMgraph-1.2.1/SEMgraph/R/semTools.R |only SEMgraph-1.2.1/SEMgraph/R/semUtils.R | 59 ++++---- SEMgraph-1.2.1/SEMgraph/data/ALSdata.RData |binary SEMgraph-1.2.1/SEMgraph/data/kegg.RData |binary SEMgraph-1.2.1/SEMgraph/data/kegg.pathways.RData |binary SEMgraph-1.2.1/SEMgraph/data/sachs.RData |binary SEMgraph-1.2.1/SEMgraph/man/SEMbap.Rd | 12 - SEMgraph-1.2.1/SEMgraph/man/SEMdci.Rd | 25 +-- SEMgraph-1.2.1/SEMgraph/man/SEMgsa.Rd | 6 SEMgraph-1.2.1/SEMgraph/man/SEMrun.Rd | 6 SEMgraph-1.2.1/SEMgraph/man/SEMtree.Rd | 67 +++++---- SEMgraph-1.2.1/SEMgraph/man/Shipley.test.Rd | 4 SEMgraph-1.2.1/SEMgraph/man/alsData.Rd | 4 SEMgraph-1.2.1/SEMgraph/man/clusterScore.Rd | 4 SEMgraph-1.2.1/SEMgraph/man/extractClusters.Rd | 4 SEMgraph-1.2.1/SEMgraph/man/factor.analysis.Rd | 4 SEMgraph-1.2.1/SEMgraph/man/kegg.Rd | 10 - SEMgraph-1.2.1/SEMgraph/man/kegg.pathways.Rd | 8 - SEMgraph-1.2.1/SEMgraph/man/localCI.test.Rd | 4 SEMgraph-1.2.1/SEMgraph/man/modelSearch.Rd | 4 SEMgraph-1.2.1/SEMgraph/man/pairwiseMatrix.Rd | 4 SEMgraph-1.2.1/SEMgraph/man/pathFinder.Rd | 4 SEMgraph-1.2.1/SEMgraph/man/predictSink.Rd |only SEMgraph-1.2.1/SEMgraph/man/resizeGraph.Rd | 4 SEMgraph-1.2.1/SEMgraph/man/transformData.Rd |only SEMgraph-1.2.1/SEMgraph/man/weightGraph.Rd | 63 ++++---- 38 files changed, 361 insertions(+), 319 deletions(-)
Title: 'knitr' Bootstrap Framework
Description: A framework to create Bootstrap <https://getbootstrap.com/> HTML reports from 'knitr'
'rmarkdown'.
Author: Jim Hester
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between knitrBootstrap versions 1.0.2 dated 2018-05-24 and 1.0.3 dated 2024-02-06
DESCRIPTION | 10 MD5 | 50 +- NEWS.md | 5 README.md | 50 +- build/vignette.rds |binary inst/doc/cars.R | 10 inst/doc/cars.Rmd | 4 inst/doc/cars.html | 516 ++++++++++++++++++--------- inst/doc/illusions.R | 10 inst/doc/illusions.Rmd | 4 inst/doc/illusions.html | 489 ++++++++++++++++++------- inst/doc/maps.R | 2 inst/doc/maps.Rmd | 4 inst/doc/maps.html | 487 ++++++++++++++++++------- inst/doc/math.Rmd | 4 inst/doc/math.html | 485 ++++++++++++++++++------- inst/doc/two-D.R | 8 inst/doc/two-D.Rmd | 4 inst/doc/two-D.html | 503 ++++++++++++++++++-------- inst/templates/knitr_bootstrap_includes.html | 4 man/knitrBootstrap.Rd | 2 vignettes/cars.Rmd | 4 vignettes/illusions.Rmd | 4 vignettes/maps.Rmd | 4 vignettes/math.Rmd | 4 vignettes/two-D.Rmd | 4 26 files changed, 1867 insertions(+), 804 deletions(-)
More information about knitrBootstrap at CRAN
Permanent link
Title: Agricultural Datasets
Description: Datasets from books, papers, and websites related to agriculture.
Example graphics and analyses are included. Data come from small-plot trials,
multi-environment trials, uniformity trials, yield monitors, and more.
Author: Kevin Wright [aut, cre, cph]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between agridat versions 1.22 dated 2023-08-25 and 1.23 dated 2024-02-06
DESCRIPTION | 12 LICENSE | 4 MD5 | 170 NEWS.md | 19 build/vignette.rds |binary data/cleveland.soil.txt |17284 +++++++++++++++++----------------- data/cochran.eelworms.txt | 98 inst/doc/agridat_data.Rmd | 3 inst/doc/agridat_data.html | 2 inst/doc/agridat_graphical_gems.Rmd | 7 inst/doc/agridat_graphical_gems.html | 167 inst/doc/agridat_intro.Rmd | 3 inst/doc/agridat_intro.html | 4 inst/doc/agridat_uniformity_data.Rmd | 1 inst/doc/agridat_uniformity_data.html | 2 man/bailey.cotton.uniformity.Rd | 24 man/barrero.maize.Rd | 48 man/battese.survey.Rd | 2 man/belamkar.augmented.Rd | 30 man/besag.bayesian.Rd | 45 man/besag.endive.Rd | 40 man/besag.met.Rd | 156 man/besag.triticale.Rd | 52 man/box.cork.Rd | 66 man/bridges.cucumber.Rd | 81 man/burgueno.alpha.Rd | 134 man/burgueno.rowcol.Rd | 43 man/burgueno.unreplicated.Rd | 62 man/butron.maize.Rd | 14 man/cleveland.soil.Rd | 52 man/cochran.eelworms.Rd | 90 man/cullis.earlygen.Rd | 89 man/damesa.maize.Rd | 11 man/digby.jointregression.Rd | 8 man/diggle.cow.Rd | 32 man/draper.safflower.uniformity.Rd | 9 man/durban.rowcol.Rd | 48 man/durban.splitplot.Rd | 41 man/federer.diagcheck.Rd | 78 man/fisher.barley.Rd | 77 man/gartner.corn.Rd | 163 man/gilmour.serpentine.Rd | 91 man/gilmour.slatehall.Rd | 46 man/gomez.multilocsplitplot.Rd | 4 man/hadasch.lettuce.Rd | 32 man/hanks.sprinkler.Rd | 69 man/hansen.multi.uniformity.Rd | 27 man/harris.wateruse.Rd | 186 man/hayman.tobacco.Rd | 6 man/heady.fertilizer.Rd | 2 man/hildebrand.systems.Rd | 76 man/ilri.sheep.Rd | 40 man/john.alpha.Rd | 63 man/kalamkar.wheat.uniformity.Rd | 26 man/kempton.barley.uniformity.Rd | 24 man/kempton.slatehall.Rd | 35 man/kenward.cattle.Rd | 62 man/libs.Rd | 70 man/lonnquist.maize.Rd | 35 man/payne.wheat.Rd | 91 man/perry.springwheat.Rd | 30 man/piepho.barley.uniformity.Rd | 31 man/piepho.cocksfoot.Rd | 51 man/shafi.tomato.uniformity.Rd | 2 man/sinclair.clover.Rd | 2 man/smith.corn.uniformity.Rd | 2 man/smith.wheat.uniformity.Rd | 1 man/snedecor.asparagus.Rd | 112 man/steptoe.morex.pheno.Rd | 48 man/stroup.nin.Rd | 52 man/stroup.splitplot.Rd | 70 man/tesfaye.millet.Rd | 53 man/thompson.cornsoy.Rd | 4 man/usgs.herbicides.Rd | 3 man/verbyla.lupin.Rd | 156 man/vold.longterm.Rd | 3 man/vsn.lupin3.Rd | 170 man/wedderburn.barley.Rd | 5 man/weiss.incblock.Rd | 25 man/weiss.lattice.Rd | 27 man/wiebe.wheat.uniformity.Rd | 1 man/yates.oats.Rd | 47 vignettes/agridat_data.Rmd | 3 vignettes/agridat_graphical_gems.Rmd | 7 vignettes/agridat_intro.Rmd | 3 vignettes/agridat_uniformity_data.Rmd | 1 86 files changed, 10547 insertions(+), 10618 deletions(-)
Title: Simple Metropolis-Hastings MCMC Algorithm
Description: A very bare-bones interface to use the Metropolis-Hastings Monte
Carlo Markov Chain algorithm. It is suitable for teaching and testing
purposes.
Author: Hugo Gruson [aut, cre, cph]
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>
Diff between simpleMH versions 0.1.0 dated 2021-05-03 and 0.1.1 dated 2024-02-06
DESCRIPTION | 8 MD5 | 15 - NEWS.md |only README.md | 20 - build/vignette.rds |binary inst/doc/FAQ.R | 4 inst/doc/FAQ.html | 404 +++++++++++++++++++++------- man/figures/README-coda-plots-1.png |binary man/figures/README-sampling-landscape-1.png |binary 9 files changed, 332 insertions(+), 119 deletions(-)
Title: Robust Small Area Estimation
Description: Empirical best linear unbiased prediction (EBLUP) and
robust prediction of the area-level means under the basic unit-level
model. The model can be fitted by maximum likelihood or a (robust)
M-estimator. Mean square prediction error is computed by a parametric
bootstrap.
Author: Tobias Schoch [aut, cre] ,
Burkardt John [cph]
Maintainer: Tobias Schoch <tobias.schoch@fhnw.ch>
Diff between rsae versions 0.2 dated 2022-05-24 and 0.3 dated 2024-02-06
rsae-0.2/rsae/.Rinstignore |only rsae-0.2/rsae/src/rsaeext.f90 |only rsae-0.3/rsae/DESCRIPTION | 17 rsae-0.3/rsae/MD5 | 55 rsae-0.3/rsae/NAMESPACE | 75 rsae-0.3/rsae/NEWS.md | 158 - rsae-0.3/rsae/R/convergence.R | 74 rsae-0.3/rsae/R/fitsaemodel.R | 72 rsae-0.3/rsae/R/makedata.R | 181 - rsae-0.3/rsae/R/model_b.R | 635 +++--- rsae-0.3/rsae/R/robpredict.R | 496 ++--- rsae-0.3/rsae/R/saemodel.R | 264 +- rsae-0.3/rsae/build/partial.rdb |binary rsae-0.3/rsae/build/vignette.rds |binary rsae-0.3/rsae/data/landsat_means.RData |only rsae-0.3/rsae/inst/CITATION | 18 rsae-0.3/rsae/inst/doc/rsae.R |only rsae-0.3/rsae/inst/doc/rsae.Rmd | 814 ++++---- rsae-0.3/rsae/inst/doc/rsae.html | 2989 +++++++++++++++++++++---------- rsae-0.3/rsae/man/fitsaemodel.Rd | 316 +-- rsae-0.3/rsae/man/fitsaemodel.control.Rd | 151 - rsae-0.3/rsae/man/landsat.Rd | 155 - rsae-0.3/rsae/man/landsat_means.Rd |only rsae-0.3/rsae/man/makedata.Rd | 225 +- rsae-0.3/rsae/man/robpredict.Rd | 365 ++- rsae-0.3/rsae/man/rsae-package.Rd | 156 - rsae-0.3/rsae/man/saemodel.Rd | 170 - rsae-0.3/rsae/src/init.c | 17 rsae-0.3/rsae/src/rsae.f90 | 1836 ++++++++++--------- rsae-0.3/rsae/src/zero_rc.f90 |only rsae-0.3/rsae/tests |only rsae-0.3/rsae/vignettes/fluent.css |only rsae-0.3/rsae/vignettes/rsae.Rmd | 814 ++++---- 33 files changed, 5705 insertions(+), 4348 deletions(-)
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Title: Use TauDEM
Description: Simple trustworthy utility functions to use TauDEM
(Terrain Analysis Using Digital Elevation Models <https://hydrology.usu.edu/taudem/taudem5/>) command-line interface.
This package provides a guide to installation of TauDEM and its dependencies GDAL (Geopatial Data Abstraction Library)
and MPI (Message Passing Interface) for different operating systems.
Moreover, it checks that TauDEM and its dependencies are correctly installed and included to the PATH,
and it provides wrapper commands for calling TauDEM methods from R.
Author: Luca Carraro [cre, aut],
University of Zurich [cph, fnd],
Maelle Salmon [aut] ,
Wael Sadek [aut],
Kirill Mueller [aut]
Maintainer: Luca Carraro <Luca.Carraro@eawag.ch>
Diff between traudem versions 1.0.1 dated 2022-10-19 and 1.0.2 dated 2024-02-06
traudem-1.0.1/traudem/.aspell |only traudem-1.0.1/traudem/README.md |only traudem-1.0.2/traudem/DESCRIPTION | 7 traudem-1.0.2/traudem/LICENSE | 4 traudem-1.0.2/traudem/MD5 | 92 traudem-1.0.2/traudem/NAMESPACE | 20 traudem-1.0.2/traudem/NEWS.md |only traudem-1.0.2/traudem/R/algorithms.R | 54 traudem-1.0.2/traudem/R/aread8.R | 190 - traudem-1.0.2/traudem/R/d8flowdir.R | 130 traudem-1.0.2/traudem/R/moveoutletstostrm.R | 188 - traudem-1.0.2/traudem/R/pitremove.R | 134 traudem-1.0.2/traudem/R/sitrep.R | 344 +- traudem-1.0.2/traudem/R/taudem-exec.R | 272 - traudem-1.0.2/traudem/R/threshold.R | 144 - traudem-1.0.2/traudem/R/traudem-package.R | 12 traudem-1.0.2/traudem/R/utils.R | 34 traudem-1.0.2/traudem/build/vignette.rds |binary traudem-1.0.2/traudem/inst/doc/taudem-installation.R | 12 traudem-1.0.2/traudem/inst/doc/taudem-installation.Rmd | 283 +- traudem-1.0.2/traudem/inst/doc/taudem-installation.html | 1003 +++---- traudem-1.0.2/traudem/inst/doc/traudem.html | 1365 ++++------ traudem-1.0.2/traudem/inst/taudem-algo-list.R | 22 traudem-1.0.2/traudem/man/fragments/_does.Rmd | 38 traudem-1.0.2/traudem/man/fragments/_example-simple.Rmd | 84 traudem-1.0.2/traudem/man/fragments/_installation.Rmd | 74 traudem-1.0.2/traudem/man/fragments/_sitrep.Rmd | 70 traudem-1.0.2/traudem/man/fragments/_tip.Rmd | 16 traudem-1.0.2/traudem/man/taudem_aread8.Rd | 128 traudem-1.0.2/traudem/man/taudem_d8flowdir.Rd | 94 traudem-1.0.2/traudem/man/taudem_exec.Rd | 118 traudem-1.0.2/traudem/man/taudem_moveoutletstostream.Rd | 102 traudem-1.0.2/traudem/man/taudem_pitremove.Rd | 98 traudem-1.0.2/traudem/man/taudem_sitrep.Rd | 86 traudem-1.0.2/traudem/man/taudem_threshold.Rd | 108 traudem-1.0.2/traudem/man/traudem-package.Rd | 72 traudem-1.0.2/traudem/tests/testthat.R | 24 traudem-1.0.2/traudem/tests/testthat/_snaps/aaa-sitrep.md | 9 traudem-1.0.2/traudem/tests/testthat/helper-os.R | 34 traudem-1.0.2/traudem/tests/testthat/helper-transform.R | 30 traudem-1.0.2/traudem/tests/testthat/test-aaa-sitrep.R | 64 traudem-1.0.2/traudem/tests/testthat/test-aread8.R | 62 traudem-1.0.2/traudem/tests/testthat/test-d8flowdir.R | 40 traudem-1.0.2/traudem/tests/testthat/test-moveoutletstostrm.R | 122 traudem-1.0.2/traudem/tests/testthat/test-pitremove.R | 94 traudem-1.0.2/traudem/tests/testthat/test-taudem_threshold.R | 76 traudem-1.0.2/traudem/tests/testthat/test-threshold.R | 32 traudem-1.0.2/traudem/vignettes/taudem-installation.Rmd | 283 +- traudem-1.0.2/traudem/vignettes/traudem.Rmd.orig | 108 49 files changed, 3224 insertions(+), 3152 deletions(-)
Title: 'REDCap' Data Management
Description: REDCap Data Management - REDCapDM is a comprehensive package that enables users to seamlessly handle data exported directly from REDCap or through API connections. This tool facilitates various functions, including data preprocessing, report generation for queries such as outliers or missing values, and tracking of identified queries. 'REDCap' (Research Electronic Data CAPture; <https://projectredcap.org>) is a web application developed at Vanderbilt University, designed for creating and managing online surveys and databases. The API connection provides users with the capability to programmatically access both data and project metadata, including the data dictionary, from the web.
Author: Joao Carmezim [aut, cre],
Pau Satorra [aut],
Judith Penafiel [aut],
Esther Garcia [aut],
Natalia Pallares [aut],
Cristian Tebe [aut]
Maintainer: Joao Carmezim <jcarmezim@igtp.cat>
Diff between REDCapDM versions 0.9.6 dated 2024-02-01 and 0.9.7 dated 2024-02-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 6 ++++++ R/redcap_data.R | 23 +++++++++++------------ 4 files changed, 23 insertions(+), 18 deletions(-)
Title: Derivation of Regression-Based Normative Data
Description: Normative data are often used to estimate the relative position of a raw test score in the population. This package allows for deriving regression-based normative data. It includes functions that enable the fitting of regression models for the mean and residual (or variance) structures, test the model assumptions, derive the normative data in the form of normative tables or automatic scoring sheets, and estimate confidence intervals for the norms. This package accompanies the book Van der Elst, W. (2024). Regression-based normative data for psychological assessment. A hands-on approach using R. Springer Nature.
Author: Wim Van der Elst [aut, cre]
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>
Diff between NormData versions 0.1 dated 2023-09-08 and 1.0 dated 2024-02-06
DESCRIPTION | 12 ++--- MD5 | 70 ++++++++++++++++---------------- R/Bootstrap.Stage.2.NormScore.R | 4 - R/Bootstrap.Stage.2.NormTable.R | 4 - R/Check.Fit.R | 6 +- man/Bootstrap.Stage.2.NormScore.Rd | 4 - man/Bootstrap.Stage.2.NormTable.Rd | 4 - man/Check.Assum.Rd | 2 man/CheckFit.Rd | 2 man/Coding.Rd | 2 man/Densities.Rd | 2 man/ExploreData.Rd | 2 man/Fluency.Rd | 2 man/Fract.Poly.Rd | 2 man/GLT.Rd | 2 man/ICC.Rd | 2 man/Levels.Rd | 2 man/Personality.Rd | 2 man/Plot.Scatterplot.Matrix.Rd | 2 man/Sandwich.Rd | 2 man/Stage.1.Rd | 2 man/Stage.2.AutoScore.Rd | 2 man/Stage.2.NormScore.Rd | 2 man/Stage.2.NormTable.Rd | 3 - man/TMAS.Rd | 2 man/Tukey.HSD.Rd | 2 man/VLT.Rd | 2 man/WriteNormTable.Rd | 2 man/plot.Bootstrap.Stage.2.NormScore.Rd | 4 - man/plot.CheckFit.Rd | 2 man/plot.ExploreData.Rd | 2 man/plot.ICC.Rd | 2 man/plot.Stage.1.Rd | 2 man/plot.Stage.2.NormScore.Rd | 2 man/plot.Tukey.HSD.Rd | 2 man/plotFittedPoly.Rd | 2 36 files changed, 82 insertions(+), 83 deletions(-)
Title: Micro-Macro Analysis for Social Networks
Description: Estimates micro effects on macro structures (MEMS) and average micro mediated effects (AMME).
URL: <https://github.com/sduxbury/netmediate>.
BugReports: <https://github.com/sduxbury/netmediate/issues>.
Robins, Garry, Phillipa Pattison, and Jodie Woolcock (2005) <doi:10.1086/427322>.
Snijders, Tom A. B., and Christian E. G. Steglich (2015) <doi:10.1177/0049124113494573>.
Imai, Kosuke, Luke Keele, and Dustin Tingley (2010) <doi:10.1037/a0020761>.
Duxbury, Scott (2023) <doi:10.1177/00811750231209040>.
Duxbury, Scott (2024) <doi:10.1177/00811750231220950>.
Author: Scott Duxbury [aut, cre, cph]
Maintainer: Scott Duxbury <duxbury@email.unc.edu>
Diff between netmediate versions 0.1.2 dated 2023-06-22 and 0.1.3 dated 2024-02-06
DESCRIPTION | 8 +++- MD5 | 16 +++++---- NAMESPACE | 1 R/MEMS_ergm.R | 3 - R/MEMS_pooled_saom.R | 17 ++++++---- R/MEMS_saom.R | 14 +++++--- R/Moran_dv.R |only man/AMME.Rd | 21 +++++------- man/MEMS.Rd | 84 ++++++++++++++++++++++++++++++++++++++++++++++----- man/Moran_dv.Rd |only 10 files changed, 122 insertions(+), 42 deletions(-)
Title: Functions for Community Data and Ordinations
Description: A collection of functions useful in (vegetation) community analyses and ordinations. Includes automatic species selection for ordination diagrams, NMDS stress/scree plots, species response curves, merging of taxa as well as calculation and sorting of synoptic tables.
Author: Friedemann von Lampe [aut, cre],
Jenny Schellenberg [aut]
Maintainer: Friedemann von Lampe <fvonlampe@uni-goettingen.de>
Diff between goeveg versions 0.7.1 dated 2023-12-13 and 0.7.2 dated 2024-02-06
DESCRIPTION | 8 +-- MD5 | 22 ++++---- NEWS.md | 11 +++- R/cov2per.R | 2 R/merge_taxa.R | 134 +++++++++++++++++++++++++++++++++++++++++----------- R/scale_tabs.r | 4 + R/screeplot_NMDS.R | 2 R/syntable.R | 8 ++- data/scale_tabs.rda |binary man/cov2per.Rd | 2 man/merge_taxa.Rd | 11 ++-- man/scale_tabs.Rd | 4 + 12 files changed, 157 insertions(+), 51 deletions(-)
Title: Procedures for Gaussian and Non Gaussian Geostatistical (Large)
Data Analysis
Description: Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) simulation and inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Covariance functions for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. See the URL for the papers associ [...truncated...]
Author: Moreno Bevilacqua [aut, cre] ,
Victor Morales-Onate [aut] ,
Christian Caamano-Carrillo [aut]
Maintainer: Moreno Bevilacqua <moreno.bevilacqua89@gmail.com>
Diff between GeoModels versions 1.1.5 dated 2023-11-14 and 1.1.6 dated 2024-02-06
DESCRIPTION | 8 +- MD5 | 30 ++++----- NAMESPACE | 2 R/GeoCV.R | 8 +- R/GeoNeighIndex.R | 10 --- R/GeoSim.r | 6 + R/GeoSimapprox.r | 126 +++++++++++++++++++++++++++++++++-------- R/Geovarestbootstrap.R | 7 -- R/Utility.r | 10 +-- man/GeoCV.Rd | 4 - man/GeoSimapprox.Rd | 66 ++++++++++++++++++++- man/GeoVarestbootstrap.Rd | 3 man/Prscores.Rd | 4 - src/CompositeLikelihood2.c | 4 - src/CompositeLikelihoodCond2.c | 3 src/CorrelationFunction.c | 11 ++- 16 files changed, 219 insertions(+), 83 deletions(-)
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Title: Methods for Graphical Models and Causal Inference
Description: Functions for causal structure
learning and causal inference using graphical models. The main algorithms
for causal structure learning are PC (for observational data without hidden
variables), FCI and RFCI (for observational data with hidden variables),
and GIES (for a mix of data from observational studies
(i.e. observational data) and data from experiments
involving interventions (i.e. interventional data) without hidden
variables). For causal inference the IDA algorithm, the Generalized
Backdoor Criterion (GBC), the Generalized Adjustment Criterion (GAC)
and some related functions are implemented. Functions for incorporating
background knowledge are provided.
Author: Markus Kalisch [aut, cre],
Alain Hauser [aut],
Martin Maechler [aut],
Diego Colombo [ctb],
Doris Entner [ctb],
Patrik Hoyer [ctb],
Antti Hyttinen [ctb],
Jonas Peters [ctb],
Nicoletta Andri [ctb],
Emilija Perkovic [ctb],
Preetam Nandy [ctb],
Philipp R [...truncated...]
Maintainer: Markus Kalisch <kalisch@stat.math.ethz.ch>
Diff between pcalg versions 2.7-9 dated 2023-09-26 and 2.7-10 dated 2024-02-06
DESCRIPTION | 8 MD5 | 40 +- NAMESPACE | 5 R/genRandDAG.R | 23 - R/isValidGraph.R | 4 R/jointIda.R | 4 R/pcalg.R | 6 R/pcalg2dagitty.R | 88 +---- inst/doc/vignette2018.R | 36 -- inst/doc/vignette2018.Rnw | 25 - inst/doc/vignette2018.pdf |binary man/addBgKnowledge.Rd | 2 man/adjustment.Rd | 2 man/fci.Rd | 5 man/pdsep.Rd | 2 man/randDAG.Rd | 2 man/rfci.Rd | 4 tests/test_adjustment.R | 2 tests/test_randDAG.R | 80 +++- tests/test_randDAG.Rout.save | 698 +++++++++++++++++++++++++++++++------------ vignettes/vignette2018.Rnw | 25 - 21 files changed, 700 insertions(+), 361 deletions(-)
Title: Uniform Sampling of Directed Acyclic Graphs
Description: Uniform sampling of Directed Acyclic Graphs (DAG) using exact
enumeration by relating each DAG to a sequence of outpoints (nodes with no
incoming edges) and then to a composition of integers as suggested by
Kuipers, J. and Moffa, G. (2015) <doi:10.1007/s11222-013-9428-y>.
Author: Markus Kalisch [aut, cre],
Manuel Schuerch [ctb]
Maintainer: Markus Kalisch <kalisch@stat.math.ethz.ch>
Diff between unifDAG versions 1.0.3 dated 2019-11-20 and 1.0.4 dated 2024-02-06
unifDAG-1.0.3/unifDAG/vignettes/unifDAG-vignette.synctex.gz |only unifDAG-1.0.3/unifDAG/vignettes/unifDAG-vignette.tex |only unifDAG-1.0.4/unifDAG/DESCRIPTION | 9 ++++----- unifDAG-1.0.4/unifDAG/MD5 | 12 ++++++------ unifDAG-1.0.4/unifDAG/build/partial.rdb |only unifDAG-1.0.4/unifDAG/build/vignette.rds |binary unifDAG-1.0.4/unifDAG/inst/doc/unifDAG-vignette.R |only unifDAG-1.0.4/unifDAG/inst/doc/unifDAG-vignette.pdf |binary unifDAG-1.0.4/unifDAG/man/unifDAG.Rd | 2 +- 9 files changed, 11 insertions(+), 12 deletions(-)
Title: R Interface for Apache Impala
Description: 'SQL' back-end to 'dplyr' for Apache Impala, the massively
parallel processing query engine for Apache 'Hadoop'. Impala enables
low-latency 'SQL' queries on data stored in the 'Hadoop' Distributed
File System '(HDFS)', Apache 'HBase', Apache 'Kudu', Amazon Simple
Storage Service '(S3)', Microsoft Azure Data Lake Store '(ADLS)',
and Dell 'EMC' 'Isilon'. See <https://impala.apache.org> for more
information about Impala.
Author: Ian Cook [aut, cre],
Cloudera [cph]
Maintainer: Ian Cook <ianmcook@gmail.com>
Diff between implyr versions 0.4.0 dated 2021-03-29 and 0.5.0 dated 2024-02-06
DESCRIPTION | 14 +++++----- LICENSE | 2 - MD5 | 28 ++++++++++----------- NEWS.md | 6 ++++ R/db-compute.R | 9 ++++-- R/db-impala.R | 10 ++++--- R/db-jdbc.R | 2 - R/db-odbc.R | 2 - R/schema.R | 2 - R/sql-escape.R | 2 - R/src_impala.R | 8 +++--- R/tbl_impala.R | 58 +++++++++++++++++++++++--------------------- README.md | 44 ++++++++++++++++----------------- man/impala_unnest.Rd | 4 +-- tests/testthat/test-error.R | 12 +++------ 15 files changed, 108 insertions(+), 95 deletions(-)
Title: Linear Model Evaluation with Randomized Residuals in a
Permutation Procedure
Description: Linear model calculations are made for many random versions of data.
Using residual randomization in a permutation procedure, sums of squares are
calculated over many permutations to generate empirical probability distributions
for evaluating model effects. This packaged is described by
Collyer & Adams (2018). Additionally, coefficients, statistics, fitted values, and residuals generated over many
permutations can be used for various procedures including pairwise tests, prediction, classification, and
model comparison. This package should provide most tools one could need for the analysis of
high-dimensional data, especially in ecology and evolutionary biology, but certainly other fields, as well.
Author: Michael Collyer [aut, cre] ,
Dean Adams [aut]
Maintainer: Michael Collyer <mlcollyer@gmail.com>
Diff between RRPP versions 1.4.0 dated 2023-08-15 and 2.0.0 dated 2024-02-06
DESCRIPTION | 10 MD5 | 96 +++--- NAMESPACE | 10 NEWS.md | 10 R/ICCstats.r |only R/RRPP-package.R |only R/RRPP.support.code.r | 242 ++++++++++------ R/RRPP.utils.r | 214 +++++++++----- R/anova.measurement.error.r |only R/base_lm.rrpp.r |only R/coef.lm.rrpp.r | 51 ++- R/convert2ggplot.r | 4 R/interSubVar.r | 41 ++ R/lm.rrpp.r | 386 ------------------------- R/lm.rrpp.ws.r | 217 +++----------- R/lr_test.R |only R/manova.update.r | 49 ++- R/measurement.error.r | 605 +++++++++++++++------------------------- R/ordinate.r | 3 R/pairwise.r | 7 R/shared.support.code.r | 52 ++- R/trajectory.analysis.r | 15 build/vignette.rds |binary data/fishy.rda |only inst/doc/ANOVA.vs.MANOVA.html | 45 +- inst/doc/Using.RRPP.R | 12 inst/doc/Using.RRPP.html | 168 +++++------ man/ICCstats.Rd |only man/RRPP-package.Rd | 22 + man/anova.measurement.error.Rd |only man/coef.lm.rrpp.Rd | 16 - man/convert2ggplot.Rd | 4 man/effect.size.Rd |only man/fishy.Rd |only man/getANOVAStats.Rd | 4 man/getResCov.Rd | 2 man/interSubVar.Rd | 33 ++ man/lm.rrpp.Rd | 6 man/lm.rrpp.ws.Rd | 37 +- man/lr_test.Rd |only man/manova.update.Rd | 6 man/measurement.error.Rd | 96 ++++-- man/ordinate.Rd | 2 man/pairwise.Rd | 7 man/plot.lm.rrpp.Rd | 4 man/plot.predict.lm.rrpp.Rd | 2 man/plot.trajectory.analysis.Rd | 2 man/print.ICCstats.Rd |only man/print.lr_test.Rd |only man/print.measurement.error.Rd | 35 ++ man/pval.Rd |only man/rrpp.data.frame.Rd | 2 man/summary.ICCstats.Rd |only man/summary.lr_test.Rd |only man/summary.pairwise.Rd | 4 man/trajectory.analysis.Rd | 2 tests/testthat/test-RRPP.R | 90 +++++ 57 files changed, 1244 insertions(+), 1369 deletions(-)
Title: Spatial Regression Analysis
Description: A collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in 'spdep'. These model fitting functions include maximum likelihood methods for cross-sectional models proposed by 'Cliff' and 'Ord' (1973, ISBN:0850860369) and (1981, ISBN:0850860814), fitting methods initially described by 'Ord' (1975) <doi:10.1080/01621459.1975.10480272>. The models are further described by 'Anselin' (1988) <doi:10.1007/978-94-015-7799-1>. Spatial two stage least squares and spatial general method of moment models initially proposed by 'Kelejian' and 'Prucha' (1998) <doi:10.1023/A:1007707430416> and (1999) <doi:10.1111/1468-2354.00027> are provided. Impact methods and MCMC fitting methods proposed by 'LeSage' and 'Pace' (2009) <doi:10.1201/9781420064254> are implemented for the family of cross-sectional spatial regression models. Methods for fitting the log determinant term in maximu [...truncated...]
Author: Roger Bivand [cre, aut] ,
Gianfranco Piras [aut],
Luc Anselin [ctb],
Andrew Bernat [ctb],
Eric Blankmeyer [ctb],
Yongwan Chun [ctb],
Virgilio Gomez-Rubio [ctb],
Daniel Griffith [ctb],
Martin Gubri [ctb],
Rein Halbersma [ctb],
James LeSage [ctb],
Ange [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spatialreg versions 1.3-1 dated 2023-11-23 and 1.3-2 dated 2024-02-06
DESCRIPTION | 8 +++---- MD5 | 18 ++++++++-------- NAMESPACE | 3 ++ NEWS.md | 10 ++++++++- R/ML_models.R | 4 +-- R/SLX_WX.R | 39 +++++++++++++++++++++++++++++++++--- R/sarlm_functions.R | 2 - inst/doc/nb_igraph.html | 49 ++++++++++++++++++++++++++++++---------------- inst/doc/sids_models.html | 2 - man/SLX.Rd | 14 +++++++++++-- 10 files changed, 109 insertions(+), 40 deletions(-)
Title: Plotting Multi-Dimensional Data
Description: Functions for viewing 2-D and 3-D data, including perspective plots, slice plots, surface plots, scatter plots, etc. Includes data sets from oceanography.
Author: Karline Soetaert <karline.soetaert@nioz.nl>
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between plot3D versions 1.4 dated 2021-05-22 and 1.4.1 dated 2024-02-06
plot3D-1.4.1/plot3D/.Rinstignore |only plot3D-1.4.1/plot3D/DESCRIPTION | 6 plot3D-1.4.1/plot3D/MD5 | 59 ++++---- plot3D-1.4.1/plot3D/R/arrows3D.R | 2 plot3D-1.4.1/plot3D/R/box3D.R | 6 plot3D-1.4.1/plot3D/R/contour3D.R | 2 plot3D-1.4.1/plot3D/R/hist3D.R | 2 plot3D-1.4.1/plot3D/R/isosurf3D.R | 4 plot3D-1.4.1/plot3D/R/persp3D.R | 2 plot3D-1.4.1/plot3D/R/persp3Db.R | 2 plot3D-1.4.1/plot3D/R/plot.struct.R | 8 - plot3D-1.4.1/plot3D/R/polygon3D.R | 2 plot3D-1.4.1/plot3D/R/ribbon3D.R | 2 plot3D-1.4.1/plot3D/R/scatter.R | 8 - plot3D-1.4.1/plot3D/R/scatter3D.R | 2 plot3D-1.4.1/plot3D/R/segments3D.R | 2 plot3D-1.4.1/plot3D/R/slice3D.R | 2 plot3D-1.4.1/plot3D/R/slicecont3D.R | 2 plot3D-1.4.1/plot3D/R/sphere.R | 2 plot3D-1.4.1/plot3D/R/surf3D.R | 2 plot3D-1.4.1/plot3D/R/text3D.R | 2 plot3D-1.4.1/plot3D/build |only plot3D-1.4.1/plot3D/inst/doc/plot3D.R |only plot3D-1.4.1/plot3D/inst/doc/plot3D.pdf |binary plot3D-1.4.1/plot3D/inst/doc/plot3D.rnw |only plot3D-1.4.1/plot3D/inst/doc/volcano.R |only plot3D-1.4.1/plot3D/inst/doc/volcano.pdf |binary plot3D-1.4.1/plot3D/inst/doc/volcano.rnw |only plot3D-1.4.1/plot3D/man/Oxsat.Rd | 216 +++++++++++++++---------------- plot3D-1.4.1/plot3D/man/colors.Rd | 2 plot3D-1.4.1/plot3D/man/legendplot.Rd | 4 plot3D-1.4.1/plot3D/man/plot3D.Rd | 4 plot3D-1.4.1/plot3D/man/trans3D.Rd | 4 plot3D-1.4/plot3D/vignettes/plot3D.pdf |only plot3D-1.4/plot3D/vignettes/volcano.pdf |only 35 files changed, 174 insertions(+), 175 deletions(-)
Title: Visualisation of Oceanographic Data and Model Output
Description: Functions for transforming and viewing 2-D and 3-D (oceanographic) data and model output.
Author: Karline Soetaert <karline.soetaert@nioz.nl>
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between OceanView versions 1.0.6 dated 2021-07-12 and 1.0.7 dated 2024-02-06
OceanView-1.0.6/OceanView/R/Mboxplot.R |only OceanView-1.0.6/OceanView/R/quivervector.r |only OceanView-1.0.6/OceanView/vignettes/Northsea.pdf |only OceanView-1.0.6/OceanView/vignettes/OceanView-Chesa.png |only OceanView-1.0.6/OceanView/vignettes/OceanView-Ltrans2D.png |only OceanView-1.0.6/OceanView/vignettes/OceanView-Ltrans3D.png |only OceanView-1.0.6/OceanView/vignettes/OceanView-NO3.png |only OceanView-1.0.6/OceanView/vignettes/OceanView-WSnioz.png |only OceanView-1.0.6/OceanView/vignettes/OceanView-WSnioza.png |only OceanView-1.0.6/OceanView/vignettes/OceanView-flows.png |only OceanView-1.0.6/OceanView/vignettes/OceanView.pdf |only OceanView-1.0.7/OceanView/DESCRIPTION | 6 +- OceanView-1.0.7/OceanView/MD5 | 33 +++++-------- OceanView-1.0.7/OceanView/NAMESPACE | 6 +- OceanView-1.0.7/OceanView/R/movie3D.R | 14 ++--- OceanView-1.0.7/OceanView/R/moviepersp3D.R | 12 ++-- OceanView-1.0.7/OceanView/R/tracers3D.R | 8 +-- OceanView-1.0.7/OceanView/build |only OceanView-1.0.7/OceanView/inst/doc/Northsea.pdf |binary OceanView-1.0.7/OceanView/inst/doc/Northsea.rnw |only OceanView-1.0.7/OceanView/inst/doc/OceanView.R |only OceanView-1.0.7/OceanView/inst/doc/OceanView.pdf |binary OceanView-1.0.7/OceanView/inst/doc/OceanView.rnw |only OceanView-1.0.7/OceanView/man/OceanView.Rd | 2 OceanView-1.0.7/OceanView/man/mapping.Rd | 18 ++----- 25 files changed, 44 insertions(+), 55 deletions(-)
Title: Linked Micromap Plots
Description: This group of functions simplifies the creation of linked micromap plots. Please
see <https://www.jstatsoft.org/v63/i02/> for additional details.
Author: Quinn Payton [aut],
Tony Olsen [aut],
Marc Weber [ctb],
Michael McManus [ctb],
Tom Kincaid [ctb],
Marcus W. Beck [cre, ctb]
Maintainer: Marcus W. Beck <mbeck@tbep.org>
Diff between micromap versions 1.9.7 dated 2023-04-26 and 1.9.8 dated 2024-02-06
DESCRIPTION | 10 MD5 | 48 +- NAMESPACE | 106 ++--- R/GraphCleaning.r | 4 R/mmPlot.r | 6 inst/NEWS.Rd | 17 inst/doc/Introduction_Guide.R |only inst/doc/Introduction_Guide.Rnw |only man/OrEcoLevel3.Rd | 46 +- man/USstates.Rd | 48 +- man/WSA3.Rd | 46 +- man/alterForMedian.Rd | 54 +- man/assimilatePlot.Rd | 68 +-- man/create_map_table.Rd | 74 +-- man/edPov.Rd | 50 +- man/internal.Rd | 54 +- man/labels_att.Rd | 58 +-- man/labels_build.Rd | 68 +-- man/lungMort.Rd | 70 +-- man/mmplot.Rd | 748 ++++++++++++++++++++-------------------- man/print.mm.Rd | 56 +- man/printLMPlot.Rd | 52 +- man/right.Rd | 44 +- man/sample_att.Rd | 106 ++--- man/statesFlatfile.Rd | 50 +- man/vegCov.Rd | 70 +-- 26 files changed, 988 insertions(+), 965 deletions(-)
Title: Create Ternary and Holdridge Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) and
Holdridge life zone plots <doi:10.1126/science.105.2727.367> using the
standard graphics functions.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting
functions.
Includes a 'Shiny' user interface for point-and-click ternary plotting.
Author: Martin R. Smith [aut, cre, cph]
,
Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 2.3.0 dated 2024-01-09 and 2.3.1 dated 2024-02-06
DESCRIPTION | 6 MD5 | 30 NEWS.md | 3 R/SetRegion.R | 8 R/TernaryPlot.R | 4 R/dot-TrianglePlot.R | 5 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Holdridge.html | 4 inst/doc/Ternary.html | 6 inst/doc/annotation.html | 4 inst/doc/interpolation.html | 4 inst/doc/new-users.html | 10 tests/testthat/_snaps/Contours/contours.svg | 768 +++++++++++----------- tests/testthat/_snaps/Contours/filledcontours.svg | 768 +++++++++++----------- tests/testthat/test-SetRegion.R | 9 16 files changed, 820 insertions(+), 809 deletions(-)
Title: Tree Ring Analysis of Disturbance Events in R
Description: Tree Ring Analysis of Disturbance Events in R (TRADER) package provides functions for disturbance reconstruction from tree-ring data, e.g. boundary line, absolute increase, growth averaging methods.
Author: Pavel Fibich [aut, cre],
Jan Altman [aut],
Tuomas Aakala [aut],
Jiri Dolezal [aut]
Maintainer: Pavel Fibich <pavel.fibich@prf.jcu.cz>
Diff between TRADER versions 1.2-3 dated 2017-01-13 and 1.2-4 dated 2024-02-06
DESCRIPTION | 19 ++- MD5 | 46 ++++---- R/trader.R | 231 ++++++++++++++++++++++++++++++++------------- inst/CITATION | 10 - man/TRADER-package.Rd | 6 - man/abrams.Rd | 16 +-- man/absTreshold.Rd | 4 man/absoluteIncrease.Rd | 12 +- man/absoluteIncreaseALL.Rd | 12 +- man/boundaryFit.Rd | 12 +- man/boundaryGet.Rd | 6 - man/boundaryLineALL.Rd | 14 +- man/doAll.Rd | 13 +- man/growthAveragingALL.Rd | 10 - man/help.Rd | 4 man/plotBoundary.Rd | 15 +- man/plotFirstYears.Rd | 8 - man/plotGrowth.Rd | 8 - man/plotNORelease.Rd | 8 - man/plotRelease.Rd | 20 +++ man/reduceByLB.Rd | 4 man/relData.Rd | 2 man/splechtna.Rd | 11 +- man/splechtnaALL.Rd | 13 +- 24 files changed, 322 insertions(+), 182 deletions(-)
Title: A Configurable 'shiny' Portal for Sharing Analysis of Molecular
Expression Data
Description: Enables deploying configuration file-based 'shiny' apps with minimal programming for interactive exploration and analysis showcase of molecular expression data. For exploration, supports visualization of correlations between rows of an expression matrix and a table of observations, such as clinical measures, and comparison of changes in expression over time. For showcase, enables visualizing the results of differential expression from package such as 'limma', co-expression modules from 'WGCNA' and lower dimensional projections.
Author: Rafael Henkin [cre, aut, cph]
Maintainer: Rafael Henkin <r.henkin@qmul.ac.uk>
Diff between shinyExprPortal versions 1.0.1 dated 2023-11-08 and 1.1.0 dated 2024-02-06
DESCRIPTION | 12 - MD5 | 81 ++++++--- NEWS.md | 15 + R/app_server.R | 3 R/create_config.R | 13 + R/mod_cohortOverview.R | 3 R/mod_compareTrajGroups.R | 4 R/mod_degDetails.R | 3 R/mod_geneModulesHeatmap.R | 3 R/mod_geneProjectionOverlay.R | 3 R/mod_multiMeasureCorr.R | 3 R/mod_singleGeneCorr.R | 3 R/mod_singleMeasureCorr.R | 3 README.md | 17 +- inst/doc/config.Rmd | 82 ++++----- inst/doc/config.html | 349 +++++++++++++++++++++--------------------- inst/doc/customization.Rmd | 16 - inst/doc/customization.html | 41 ++-- inst/doc/dataprep.Rmd | 22 +- inst/doc/dataprep.html | 221 +++++++++++++------------- inst/doc/shinyExprPortal.Rmd | 46 ++--- inst/doc/shinyExprPortal.html | 294 ++++++++++++++++++----------------- inst/helpfiles |only vignettes/config.Rmd | 82 ++++----- vignettes/customization.Rmd | 16 - vignettes/dataprep.Rmd | 22 +- vignettes/shinyExprPortal.Rmd | 46 ++--- 27 files changed, 750 insertions(+), 653 deletions(-)
More information about shinyExprPortal at CRAN
Permanent link
Title: Spatial Autoregressive Graphical Model
Description: Implements the methodological developments found in Hermes, van Heerwaarden, and Behrouzi (2023) <doi:10.48550/arXiv.2308.04325>, and allows for the statistical modeling of asymmetric between-location effects, as well as within-location effects using spatial autoregressive graphical models. The package allows for the generation of spatial weight matrices to capture asymmetric effects for strip-type intercropping designs, although it can handle any type of spatial data commonly found in other sciences.
Author: Sjoerd Hermes [aut, cre],
Joost van Heerwaarden [ctb],
Pariya Behrouzi [ctb]
Maintainer: Sjoerd Hermes <sjoerd.hermes@wur.nl>
Diff between SAGM versions 0.1.0 dated 2023-08-14 and 1.0.0 dated 2024-02-06
DESCRIPTION | 6 +- MD5 | 6 +- R/SAGM.R | 152 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++---- man/SAGM.Rd | 42 +++++++++++++--- 4 files changed, 183 insertions(+), 23 deletions(-)
Title: Continuous-Time Multivariate Analysis
Description: Implements a basis function or functional data analysis framework
for several techniques of multivariate analysis in continuous-time
setting. Specifically, we introduced continuous-time analogues of
several classical techniques of multivariate analysis, such as
principal component analysis, canonical correlation analysis,
Fisher linear discriminant analysis, K-means clustering, and so
on. Details are in Biplab Paul, Philip T. Reiss and Erjia Cui (2023)
"Continuous-time multivariate analysis" <doi:10.48550/arXiv.2307.09404>.
Author: Biplab Paul [aut, cre],
Philip Tzvi Reiss [aut]
Maintainer: Biplab Paul <paul.biplab497@gmail.com>
Diff between ctmva versions 1.3.0 dated 2023-07-19 and 1.4.0 dated 2024-02-06
DESCRIPTION | 8 +- MD5 | 46 ++++++++------ NAMESPACE | 3 R/cca.ct.R | 2 R/center.ct.R | 50 +++++++--------- R/cor.ct.R | 23 +++++-- R/cov.ct.R | 18 +++-- R/ctmva-package.R | 6 - R/inprod.cent.R | 13 ++-- R/kmeans.ct.R | 54 +++++++++++++---- R/pca.ct.R | 2 R/plot.kmeans.ct.R | 142 +++++++++++++++++++++++----------------------- R/plot.silhouette.ct.R |only R/silhouette.ct.R |only R/standardize.ct.R | 39 ++++++------ man/cca.ct.Rd | 2 man/cor.ct.Rd | 2 man/ctmva-package.Rd | 5 - man/inprod.cent.Rd | 2 man/kmeans.ct.Rd | 17 ++++- man/lda.ct.Rd | 88 ++++++++++++++-------------- man/pca.ct.Rd | 2 man/plot.kmeans.ct.Rd | 6 - man/plot.silhouette.ct.Rd |only man/silhouette.ct.Rd |only man/standardize.ct.Rd | 4 - 26 files changed, 302 insertions(+), 232 deletions(-)
Title: Robust Methods for Multiway Data Analysis, Applicable also for
Compositional Data
Description: Provides methods for multiway data analysis by means of Parafac
and Tucker 3 models. Robust versions (Engelen and Hubert (2011) <doi:10.1016/j.aca.2011.04.043>) and versions
for compositional data are also provided (Gallo (2015) <doi:10.1080/03610926.2013.798664>, Di Palma et al. (2018) <doi:10.1080/02664763.2017.1381669>).
Several optimization methods alternative to ALS are available
(Simonacci and Gallo (2019) <doi:10.1016/j.chemolab.2019.103822>, Simonacci and Gallo (2020) <doi:10.1007/s00500-019-04320-9>).
Author: Valentin Todorov [aut, cre] ,
Violetta Simonacci [aut],
Maria Anna Di Palma [aut],
Michele Gallo [aut]
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between rrcov3way versions 0.3-0 dated 2023-06-24 and 0.5-0 dated 2024-02-06
ChangeLog | 6 ++ DESCRIPTION | 11 ++-- MD5 | 22 +++++---- NAMESPACE | 3 - R/cp_gen.R |only R/cp_int2.R | 6 +- R/plot-utils.R | 117 +++++++++++++++++++++---------------------------- R/utils.R | 2 man/cp_gen.Rd |only man/cp_int2.Rd | 6 +- man/elind.Rd | 2 man/girls.Rd | 2 tests/tplots.Rout.save | 30 +----------- 13 files changed, 92 insertions(+), 115 deletions(-)
Title: R Commander Plug-in for Risk Demonstration
Description: R Commander plug-in to demonstrate various actuarial and financial risks. It includes valuation of bonds and stocks, portfolio optimization, classical ruin theory, demography and epidemic.
Author: Arto Luoma
Maintainer: Arto Luoma <arto.luoma@wippies.com>
Diff between RcmdrPlugin.RiskDemo versions 3.1 dated 2023-11-13 and 3.2 dated 2024-02-06
ChangeLog | 2 ++ DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NAMESPACE | 24 ++++++++++++++++-------- 4 files changed, 27 insertions(+), 17 deletions(-)
More information about RcmdrPlugin.RiskDemo at CRAN
Permanent link
Title: Nicely Formatted Contingency Tables and Frequency Tables
Description: Nicely formatted frequency tables and contingency tables (1-way, 2-way, 3-way and 4-way tables), that can easily be exported to HTML or 'Office' documents. Designed to work with pipes.
Author: Mans Thulin [aut, cre],
Kajsa Grind [aut],
Stefan Furne [aut]
Maintainer: Mans Thulin <mans@statistikkonsult.com>
Diff between ivo.table versions 0.3 dated 2024-01-12 and 0.4 dated 2024-02-06
ivo.table-0.3/ivo.table/man/ivo_flextable_to_xlsx.Rd |only ivo.table-0.3/ivo.table/tests |only ivo.table-0.4/ivo.table/DESCRIPTION | 17 ivo.table-0.4/ivo.table/MD5 | 28 ivo.table-0.4/ivo.table/NAMESPACE | 1 ivo.table-0.4/ivo.table/NEWS.md | 3 ivo.table-0.4/ivo.table/R/ivo_tables.R | 663 ++----------------- ivo.table-0.4/ivo.table/README.md | 9 ivo.table-0.4/ivo.table/man/ivo_flextable_theme.Rd | 2 ivo.table-0.4/ivo.table/man/ivo_table_add_mask.Rd | 4 ivo.table-0.4/ivo.table/man/ivo_table_masked.Rd | 5 11 files changed, 100 insertions(+), 632 deletions(-)
Title: Classify Occurrences by Confidence Levels in the Species ID
Description: Classify occurrence records based on confidence
levels of species identification. In addition, implement tools to filter
occurrences inside grid cells and to manually check for possibles errors with
an interactive shiny application.
Author: Arthur Vinicius Rodrigues [aut, cre]
,
Gabriel Nakamura [aut] ,
Leandro Duarte [aut]
Maintainer: Arthur Vinicius Rodrigues <rodrigues.arthur.v@gmail.com>
Diff between naturaList versions 0.5.1 dated 2023-04-27 and 0.5.2 dated 2024-02-06
DESCRIPTION | 10 +- MD5 | 26 +++--- NEWS.md | 5 + R/classify_occ.R | 22 ++--- R/map_module.R | 1 README.md | 3 inst/doc/naturaList_grid_filter_vignette.html | 38 ++++----- inst/doc/naturaList_map_module_vignette.R | 8 +- inst/doc/naturaList_map_module_vignette.html | 38 ++++----- inst/doc/natutaList_clean_eval_vignette.R | 2 inst/doc/natutaList_clean_eval_vignette.html | 102 +++++++++++++------------- inst/doc/natutaList_vignette.R | 2 inst/doc/natutaList_vignette.html | 64 ++++++++-------- man/classify_occ.Rd | 22 ++--- 14 files changed, 173 insertions(+), 170 deletions(-)
Title: Linear Inverse Model Examples and Solution Methods
Description: Functions that read and solve linear inverse problems (food web problems, linear programming problems).
These problems find solutions to linear or quadratic functions:
min or max (f(x)), where f(x) = ||Ax-b||^2 or f(x) = sum(ai*xi)
subject to equality constraints Ex=f and inequality constraints Gx>=h.
Author: Karline Soetaert <karline.soetaert@nioz.nl>,
Dick van Oevelen<dick.vanoevelen@nioz.nl>
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between LIM versions 1.4.7 dated 2022-05-11 and 1.4.7.1 dated 2024-02-06
DESCRIPTION | 6 - MD5 | 18 ++- NAMESPACE | 1 build |only inst/CITATION | 8 - inst/doc/LIM.Rnw |only inst/doc/LIM.pdf |binary inst/doc/LIMecoli.R |only inst/doc/LIMecoli.Rnw |only inst/doc/LIMecoli.pdf |binary man/LIMEcoli.Rd | 2 man/Read.Rd | 272 +++++++++++++++++++++++++------------------------- 12 files changed, 156 insertions(+), 151 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-22 3.0