Title: Interface with Google Cloud Document AI API
Description: R interface for the Google Cloud Services 'Document AI API'
<https://cloud.google.com/document-ai/> with additional tools for
output file parsing and text reconstruction. 'Document AI' is a
powerful server-based OCR service that extracts text and tables from
images and PDF files with high accuracy. 'daiR' gives R users
programmatic access to this service and additional tools to handle
and visualize the output. See the package website <https://dair.info/>
for more information and examples.
Author: Thomas Hegghammer [aut, cre]
Maintainer: Thomas Hegghammer <hegghammer@gmail.com>
Diff between daiR versions 0.9.9 dated 2023-09-07 and 1.0.0 dated 2024-02-11
daiR-0.9.9/daiR/R/get_tables.R |only daiR-0.9.9/daiR/R/inspect_output.R |only daiR-0.9.9/daiR/R/process_output.R |only daiR-0.9.9/daiR/inst/doc/basics.R |only daiR-0.9.9/daiR/inst/doc/basics.Rmd |only daiR-0.9.9/daiR/inst/doc/basics.html |only daiR-0.9.9/daiR/inst/doc/extracting_tables.R |only daiR-0.9.9/daiR/inst/doc/extracting_tables.Rmd |only daiR-0.9.9/daiR/inst/doc/extracting_tables.html |only daiR-0.9.9/daiR/inst/doc/setting_up_google_storage.R |only daiR-0.9.9/daiR/inst/doc/setting_up_google_storage.Rmd |only daiR-0.9.9/daiR/inst/doc/setting_up_google_storage.html |only daiR-0.9.9/daiR/inst/doc/using_document_ai.R |only daiR-0.9.9/daiR/inst/doc/using_document_ai.Rmd |only daiR-0.9.9/daiR/inst/doc/using_document_ai.html |only daiR-0.9.9/daiR/man/dai_async_tab.Rd |only daiR-0.9.9/daiR/man/dai_sync_tab.Rd |only daiR-0.9.9/daiR/tests/testthat/examples/image.png |only daiR-0.9.9/daiR/tests/testthat/examples/image.tiff |only daiR-0.9.9/daiR/tests/testthat/examples/table_output.json |only daiR-0.9.9/daiR/tests/testthat/test_get_tables.R |only daiR-0.9.9/daiR/tests/testthat/test_inspect_output.R |only daiR-0.9.9/daiR/tests/testthat/test_process_output.R |only daiR-0.9.9/daiR/vignettes/basics.Rmd |only daiR-0.9.9/daiR/vignettes/extracting_tables.Rmd |only daiR-0.9.9/daiR/vignettes/setting_up_google_storage.Rmd |only daiR-0.9.9/daiR/vignettes/using_document_ai.Rmd |only daiR-1.0.0/daiR/DESCRIPTION | 15 daiR-1.0.0/daiR/MD5 | 159 ++- daiR-1.0.0/daiR/NAMESPACE | 10 daiR-1.0.0/daiR/NEWS.md | 12 daiR-1.0.0/daiR/R/auth.R | 11 daiR-1.0.0/daiR/R/defunct.R |only daiR-1.0.0/daiR/R/deprec.R |only daiR-1.0.0/daiR/R/draw.R |only daiR-1.0.0/daiR/R/extract.R |only daiR-1.0.0/daiR/R/manipulate.R |only daiR-1.0.0/daiR/R/processors.R | 399 +++++++++- daiR-1.0.0/daiR/R/send_to_dai.R | 361 --------- daiR-1.0.0/daiR/R/utils.R | 12 daiR-1.0.0/daiR/R/xml.R | 171 +--- daiR-1.0.0/daiR/R/zzz.R | 3 daiR-1.0.0/daiR/README.md | 28 daiR-1.0.0/daiR/build/vignette.rds |binary daiR-1.0.0/daiR/inst/doc/complex_file_and_folder_management.R | 24 daiR-1.0.0/daiR/inst/doc/complex_file_and_folder_management.html | 2 daiR-1.0.0/daiR/inst/doc/configuration.R |only daiR-1.0.0/daiR/inst/doc/configuration.Rmd |only daiR-1.0.0/daiR/inst/doc/configuration.html |only daiR-1.0.0/daiR/inst/doc/gcs_storage.R |only daiR-1.0.0/daiR/inst/doc/gcs_storage.Rmd |only daiR-1.0.0/daiR/inst/doc/gcs_storage.html |only daiR-1.0.0/daiR/inst/doc/quickstart.R |only daiR-1.0.0/daiR/inst/doc/quickstart.Rmd |only daiR-1.0.0/daiR/inst/doc/quickstart.html |only daiR-1.0.0/daiR/inst/doc/reconstructing_text.R | 127 +-- daiR-1.0.0/daiR/inst/doc/reconstructing_text.Rmd | 104 -- daiR-1.0.0/daiR/inst/doc/reconstructing_text.html | 169 ++-- daiR-1.0.0/daiR/inst/doc/tables.R |only daiR-1.0.0/daiR/inst/doc/tables.Rmd |only daiR-1.0.0/daiR/inst/doc/tables.html |only daiR-1.0.0/daiR/inst/doc/usage.R |only daiR-1.0.0/daiR/inst/doc/usage.Rmd |only daiR-1.0.0/daiR/inst/doc/usage.html |only daiR-1.0.0/daiR/man/build_block_df.Rd | 16 daiR-1.0.0/daiR/man/build_token_df.Rd | 16 daiR-1.0.0/daiR/man/create_processor.Rd |only daiR-1.0.0/daiR/man/dai_notify.Rd | 3 daiR-1.0.0/daiR/man/dai_status.Rd | 13 daiR-1.0.0/daiR/man/defunct.Rd |only daiR-1.0.0/daiR/man/delete_processor.Rd |only daiR-1.0.0/daiR/man/deprecated.Rd |only daiR-1.0.0/daiR/man/disable_processor.Rd |only daiR-1.0.0/daiR/man/draw_blocks.Rd | 37 daiR-1.0.0/daiR/man/draw_entities.Rd |only daiR-1.0.0/daiR/man/draw_lines.Rd | 37 daiR-1.0.0/daiR/man/draw_paragraphs.Rd | 37 daiR-1.0.0/daiR/man/draw_tokens.Rd | 37 daiR-1.0.0/daiR/man/enable_processor.Rd |only daiR-1.0.0/daiR/man/figures/frontpage_image.png |binary daiR-1.0.0/daiR/man/from_labelme.Rd | 4 daiR-1.0.0/daiR/man/get_entities.Rd |only daiR-1.0.0/daiR/man/get_processor_info.Rd | 16 daiR-1.0.0/daiR/man/get_processor_versions.Rd | 14 daiR-1.0.0/daiR/man/get_processors.Rd | 9 daiR-1.0.0/daiR/man/get_tables.Rd |only daiR-1.0.0/daiR/man/get_text.Rd |only daiR-1.0.0/daiR/man/img_to_binbase.Rd | 2 daiR-1.0.0/daiR/man/list_processor_types.Rd |only daiR-1.0.0/daiR/man/merge_shards.Rd | 14 daiR-1.0.0/daiR/man/reassign_tokens.Rd | 2 daiR-1.0.0/daiR/man/reassign_tokens2.Rd | 2 daiR-1.0.0/daiR/man/redraw_blocks.Rd | 2 daiR-1.0.0/daiR/man/split_block.Rd | 2 daiR-1.0.0/daiR/man/tables_from_dai_file.Rd | 6 daiR-1.0.0/daiR/man/tables_from_dai_response.Rd | 6 daiR-1.0.0/daiR/man/text_from_dai_file.Rd | 7 daiR-1.0.0/daiR/man/text_from_dai_response.Rd | 7 daiR-1.0.0/daiR/tests/testthat/examples/table_form_parsed.json |only daiR-1.0.0/daiR/tests/testthat/test_auth.R | 5 daiR-1.0.0/daiR/tests/testthat/test_draw.R |only daiR-1.0.0/daiR/tests/testthat/test_extract.R |only daiR-1.0.0/daiR/tests/testthat/test_manipulate.R |only daiR-1.0.0/daiR/tests/testthat/test_processors.R | 282 ++++++- daiR-1.0.0/daiR/tests/testthat/test_send_to_dai.R | 110 -- daiR-1.0.0/daiR/tests/testthat/test_utils.R | 6 daiR-1.0.0/daiR/tests/testthat/test_xml.R |only daiR-1.0.0/daiR/tests/testthat/test_zzz.R | 2 daiR-1.0.0/daiR/vignettes/configuration.Rmd |only daiR-1.0.0/daiR/vignettes/extracting_tables.html |only daiR-1.0.0/daiR/vignettes/gcs_storage.Rmd |only daiR-1.0.0/daiR/vignettes/quickstart.Rmd |only daiR-1.0.0/daiR/vignettes/reconstructing_text.Rmd | 104 -- daiR-1.0.0/daiR/vignettes/tables.Rmd |only daiR-1.0.0/daiR/vignettes/usage.Rmd |only 115 files changed, 1203 insertions(+), 1202 deletions(-)
Title: Health Economic Simulation Modeling and Decision Analysis
Description: A modular and computationally efficient R package for
parameterizing, simulating, and analyzing health economic simulation
models. The package supports cohort discrete time state transition models
(Briggs et al. 1998) <doi:10.2165/00019053-199813040-00003>,
N-state partitioned survival models (Glasziou et al. 1990)
<doi:10.1002/sim.4780091106>, and individual-level continuous
time state transition models (Siebert et al. 2012) <doi:10.1016/j.jval.2012.06.014>,
encompassing both Markov (time-homogeneous and time-inhomogeneous) and
semi-Markov processes. Decision uncertainty from a cost-effectiveness analysis is
quantified with standard graphical and tabular summaries of a probabilistic
sensitivity analysis (Claxton et al. 2005, Barton et al. 2008) <doi:10.1002/hec.985>,
<doi:10.1111/j.1524-4733.2008.00358.x>. Use of C++ and data.table
make individual-patient simulation, probabilistic sensitivity analysis,
and incorporation of patient heterogeneity fast.
Author: Devin Incerti [aut, cre],
Jeroen P. Jansen [aut],
Mark Clements [aut],
R Core Team [ctb]
Maintainer: Devin Incerti <devin.incerti@gmail.com>
Diff between hesim versions 0.5.3 dated 2022-09-03 and 0.5.4 dated 2024-02-11
DESCRIPTION | 11 MD5 | 167 +++++--- NAMESPACE | 4 R/RcppExports.R | 4 R/ctstm.R | 54 ++ R/data.R | 14 R/hesim.R | 5 R/hesim_data.R | 31 - R/input_mats.R | 2 R/model_def.R | 20 - R/params.R | 12 R/params_lm.R | 2 R/params_mlogit.R | 2 R/params_surv.R | 6 R/params_surv_list.R | 2 R/plot.R | 1 R/sim-general.R | 9 R/statevals.R | 3 R/tparams_transprobs.R | 7 R/utils.R | 5 build/vignette.rds |binary inst/doc/cea.R | 2 inst/doc/cea.html | 356 +++++++++--------- inst/doc/intro.R | 6 inst/doc/intro.html | 340 ++++++++--------- inst/doc/markov-cohort.R | 6 inst/doc/markov-cohort.html | 302 +++++++-------- inst/doc/markov-inhomogeneous-cohort.R | 14 inst/doc/markov-inhomogeneous-cohort.html | 590 +++++++++++++++--------------- inst/doc/markov-inhomogeneous-indiv.R | 14 inst/doc/markov-inhomogeneous-indiv.html | 510 +++++++++++++------------ inst/doc/mlogit.R | 6 inst/doc/mlogit.html | 304 +++++++-------- inst/doc/mstate.R | 10 inst/doc/mstate.html | 444 +++++++++++----------- inst/doc/psm.R | 26 - inst/doc/psm.html | 320 ++++++++-------- inst/include/hesim/ctstm/indiv-ctstm.h | 14 man/IndivCtstmTrans.Rd | 19 man/ce.Rd | 6 man/check.Rd | 17 man/create_IndivCtstmTrans.Rd | 12 man/create_params.Rd | 12 man/hesim.Rd | 27 + man/mstate3_exdata.Rd | 8 man/multinom3_exdata.Rd | 2 man/params_surv.Rd | 4 man/psm4_exdata.Rd | 4 src/RcppExports.cpp | 9 src/indiv-ctstm.cpp | 3 tests/testthat/test-ctstm.R | 19 vignettes/intro_cache |only 52 files changed, 1993 insertions(+), 1774 deletions(-)
Title: Rolling Entry Matching
Description: Functions to perform propensity score matching on rolling entry interventions for which a suitable "entry" date is not observed for nonparticipants. For more details, please reference Witman et al. (2018) <doi:10.1111/1475-6773.13086>.
Author: Rob Chew [aut, cre], Kasey Jones [aut, cre], Mahin Manley [aut], Allison Witman [res], Chris Beadles [res], Yiyan Liu [res], Ann Larson [res]
Maintainer: Rob Chew <rchew@rti.org>
Diff between rollmatch versions 2.0.2 dated 2020-06-02 and 2.0.3 dated 2024-02-11
rollmatch-2.0.2/rollmatch/data/datalist |only rollmatch-2.0.3/rollmatch/DESCRIPTION | 12 +++---- rollmatch-2.0.3/rollmatch/MD5 | 29 +++++++++---------- rollmatch-2.0.3/rollmatch/R/run_checks.R | 13 +++----- rollmatch-2.0.3/rollmatch/R/utility_functions.R | 19 +++++++++--- rollmatch-2.0.3/rollmatch/man/add_balance_table.Rd | 3 - rollmatch-2.0.3/rollmatch/man/add_matches_columns.Rd | 16 +++++++--- rollmatch-2.0.3/rollmatch/man/compare_pool.Rd | 2 - rollmatch-2.0.3/rollmatch/man/create_matches.Rd | 2 - rollmatch-2.0.3/rollmatch/man/make_output.Rd | 2 - rollmatch-2.0.3/rollmatch/man/rem_synthdata.Rd | 6 ++- rollmatch-2.0.3/rollmatch/man/rem_synthdata_small.Rd | 6 ++- rollmatch-2.0.3/rollmatch/man/rollmatch.Rd | 21 ++++++++++--- rollmatch-2.0.3/rollmatch/man/run_checks_two.Rd | 10 +----- rollmatch-2.0.3/rollmatch/man/score_data.Rd | 4 +- rollmatch-2.0.3/rollmatch/man/trim_pool.Rd | 14 ++++++--- 16 files changed, 92 insertions(+), 67 deletions(-)
More information about GeoWeightedModel at CRAN
Permanent link
Title: Moderated Nonlinear Factor Analysis
Description: Conducts moderated nonlinear factor analysis (e.g., Curran et al., 2014,
<doi:10.1080/00273171.2014.889594>).
Regularization methods are implemented for assessing non-invariant items.
Currently, the package includes dichotomous items and unidimensional
item response models. Extensions will be included in future package
versions.
Author: Alexander Robitzsch [aut,cre]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between mnlfa versions 0.2-4 dated 2022-05-18 and 0.3-4 dated 2024-02-11
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- R/RcppExports.R | 2 +- R/mnlfa.R | 2 +- README.md | 5 ++++- build/partial.rdb |binary data/data.mnlfa01.rda |binary inst/CITATION | 4 ++-- inst/NEWS | 11 +++++++++++ man/mnlfa-package.Rd | 3 ++- src/RcppExports.cpp | 2 +- 11 files changed, 37 insertions(+), 22 deletions(-)
Title: Handy File and String Manipulation
Description: This started out as a package for file and string
manipulation. Since then, the 'fs' and 'strex' packages emerged,
offering functionality previously given by this package (but it's done
better in these new ones). Those packages have hence almost pushed
'filesstrings' into extinction. However, it still has a small number
of unique, handy file manipulation functions which can be seen in the
vignette. One example is a function to remove spaces from all file
names in a directory.
Author: Rory Nolan [aut, cre, cph] ,
Sergi Padilla-Parra [ths]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between filesstrings versions 3.3.0 dated 2024-01-31 and 3.4.0 dated 2024-02-11
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- NEWS.md | 6 ++++++ inst/doc/files.html | 4 ++-- 4 files changed, 16 insertions(+), 9 deletions(-)
Title: Simple and Configurable Tables in 'HTML', 'LaTeX', 'Markdown',
'Word', 'PNG', 'PDF', and 'Typst' Formats
Description: Create highly customized tables with this simple and dependency-free package. Data frames can be converted to 'HTML', 'LaTeX', 'Markdown', 'Word', 'PNG', 'PDF', or 'Typst' tables. The user interface is minimalist and easy to learn. The syntax concise. 'HTML' tables can be customized using the flexible 'Bootstrap' framework, and 'LaTeX' code with the 'tabularray' package.
Author: Vincent Arel-Bundock [aut, cre]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between tinytable versions 0.0.3 dated 2024-02-01 and 0.0.4 dated 2024-02-11
DESCRIPTION | 11 - MD5 | 74 ++++---- NEWS.md | 21 ++ R/escape.R | 52 +++++- R/finalize_grid.R | 12 + R/format_tt.R | 81 +++++---- R/group_grid.R | 6 R/group_tt.R | 2 R/plot_tt.R | 22 +- R/sanity.R | 20 ++ R/style_bootstrap.R | 22 ++ R/style_grid.R | 31 +++ R/style_tabularray.R | 22 ++ R/style_tt.R | 58 ++++-- R/tt.R | 2 R/tt_bootstrap.R | 1 R/tt_grid.R | 30 ++- README.md | 93 +++++++++-- build/partial.rdb |binary inst/templates/bootstrap.html | 45 +++-- inst/tinytest/_tinysnapshot/colrowspan-markdown_multiple.txt |only inst/tinytest/_tinysnapshot/escape-html.txt | 2 inst/tinytest/_tinysnapshot/escape-latex_colnames.txt |only inst/tinytest/_tinysnapshot/group_tt-3level_md.txt | 2 inst/tinytest/_tinysnapshot/html-heatmap.rds |binary inst/tinytest/_tinysnapshot/html-issue58.rds |binary inst/tinytest/_tinysnapshot/html-issue88.rds |binary inst/tinytest/_tinysnapshot/html-issue92.rds |binary inst/tinytest/_tinysnapshot/html-striped.rds |binary inst/tinytest/_tinysnapshot/html-striped_orange.rds |binary inst/tinytest/_tinysnapshot/html-vectorized_color_j.rds |binary inst/tinytest/_tinysnapshot/i_j-sanitize_j_equivalence.txt |only inst/tinytest/_tinysnapshot/markdown-group_i_style_tt.txt |only inst/tinytest/_tinysnapshot/markdown-group_j_wider_1.txt |only inst/tinytest/_tinysnapshot/markdown-group_j_wider_2.txt |only inst/tinytest/test-colrowspan.R |only inst/tinytest/test-escape.R | 7 inst/tinytest/test-i_j.R |only inst/tinytest/test-markdown.R | 25 ++ man/format_tt.Rd | 10 + man/style_tt.Rd | 32 +++ man/tt.Rd | 2 42 files changed, 527 insertions(+), 158 deletions(-)
Title: A Synchronized Tausworthe RNG for R and Python
Description: Generate the same random numbers in R and Python.
Author: Gertjan van den Burg <gertjanvandenburg@gmail.com>
Maintainer: Gertjan van den Burg <gertjanvandenburg@gmail.com>
Diff between SyncRNG versions 1.3.2 dated 2023-05-01 and 1.3.3 dated 2024-02-11
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/syncrng-package.R | 7 +++---- man/syncrng-package.Rd | 2 ++ 5 files changed, 18 insertions(+), 13 deletions(-)
Title: Superpixels of Spatial Data
Description: Creates superpixels based on input spatial data.
This package works on spatial data with one variable (e.g., continuous raster), many variables (e.g., RGB rasters), and spatial patterns (e.g., areas in categorical rasters).
It is based on the SLIC algorithm (Achanta et al. (2012) <doi:10.1109/TPAMI.2012.120>), and readapts it to work with arbitrary dissimilarity measures.
Author: Jakub Nowosad [aut, cre] ,
Pascal Mettes [ctb] ,
Charles Jekel [ctb]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between supercells versions 0.9.5 dated 2023-11-11 and 1.0.0 dated 2024-02-11
supercells-0.9.5/supercells/src/slic.cpp |only supercells-1.0.0/supercells/DESCRIPTION | 6 - supercells-1.0.0/supercells/MD5 | 21 ++- supercells-1.0.0/supercells/NEWS.md |only supercells-1.0.0/supercells/R/cpp11.R | 4 supercells-1.0.0/supercells/R/supercells.R | 79 +++++++++------ supercells-1.0.0/supercells/src/cpp11.cpp | 8 - supercells-1.0.0/supercells/src/create_connectivity.cpp |only supercells-1.0.0/supercells/src/distances.cpp | 33 +++--- supercells-1.0.0/supercells/src/distances.h | 5 supercells-1.0.0/supercells/src/generate_superpixels.cpp |only supercells-1.0.0/supercells/src/private_functions.cpp |only supercells-1.0.0/supercells/src/run_slic.cpp |only supercells-1.0.0/supercells/src/slic.h | 71 +++++-------- supercells-1.0.0/supercells/src/writers.cpp |only 15 files changed, 124 insertions(+), 103 deletions(-)
Title: Anomaly Detection in Temporal Networks
Description: Anomaly detection in dynamic, temporal networks. The package
'oddnet' uses a feature-based method to identify anomalies. First, it computes
many features for each network. Then it models the features using time series
methods. Using time series residuals it detects anomalies. This way, the
temporal dependencies are accounted for when identifying anomalies
(Kandanaarachchi, Hyndman 2022) <arXiv:2210.07407>.
Author: Sevvandi Kandanaarachchi [aut, cre]
,
Rob Hyndman [aut]
Maintainer: Sevvandi Kandanaarachchi <sevvandik@gmail.com>
Diff between oddnet versions 0.1.0 dated 2022-12-22 and 0.1.1 dated 2024-02-11
oddnet-0.1.0/oddnet/R/tensorsplat.R |only oddnet-0.1.0/oddnet/man/tensorsplat.Rd |only oddnet-0.1.1/oddnet/DESCRIPTION | 6 oddnet-0.1.1/oddnet/MD5 | 14 - oddnet-0.1.1/oddnet/NAMESPACE | 1 oddnet-0.1.1/oddnet/R/anomaly_detection.R | 1 oddnet-0.1.1/oddnet/README.md | 2 oddnet-0.1.1/oddnet/inst/doc/oddnet.R | 2 oddnet-0.1.1/oddnet/inst/doc/oddnet.html | 296 +++++++++++++++--------------- 9 files changed, 162 insertions(+), 160 deletions(-)
Title: Thermodynamic Calculations and Diagrams for Geochemistry
Description: An integrated set of tools for thermodynamic calculations in
aqueous geochemistry and geobiochemistry. Functions are provided for writing
balanced reactions to form species from user-selected basis species and for
calculating the standard molal properties of species and reactions, including
the standard Gibbs energy and equilibrium constant. Calculations of the
non-equilibrium chemical affinity and equilibrium chemical activity of species
can be portrayed on diagrams as a function of temperature, pressure, or
activity of basis species; in two dimensions, this gives a maximum affinity or
predominance diagram. The diagrams have formatted chemical formulas and axis
labels, and water stability limits can be added to Eh-pH, oxygen fugacity-
temperature, and other diagrams with a redox variable. The package has been
developed to handle common calculations in aqueous geochemistry, such as
solubility due to complexation of metal ions, mineral buffers of redox or pH,
and changing the basis spec [...truncated...]
Author: Jeffrey Dick [aut, cre]
Maintainer: Jeffrey Dick <j3ffdick@gmail.com>
Diff between CHNOSZ versions 2.0.0 dated 2023-03-13 and 2.1.0 dated 2024-02-11
CHNOSZ-2.0.0/CHNOSZ/inst/extdata/src |only CHNOSZ-2.1.0/CHNOSZ/DESCRIPTION | 11 CHNOSZ-2.1.0/CHNOSZ/MD5 | 288 ++-- CHNOSZ-2.1.0/CHNOSZ/NAMESPACE | 5 CHNOSZ-2.1.0/CHNOSZ/R/AD.R | 3 CHNOSZ-2.1.0/CHNOSZ/R/Berman.R | 14 CHNOSZ-2.1.0/CHNOSZ/R/DEW.R | 10 CHNOSZ-2.1.0/CHNOSZ/R/EOSregress.R |only CHNOSZ-2.1.0/CHNOSZ/R/IAPWS95.R | 4 CHNOSZ-2.1.0/CHNOSZ/R/add.OBIGT.R | 27 CHNOSZ-2.1.0/CHNOSZ/R/add.protein.R | 2 CHNOSZ-2.1.0/CHNOSZ/R/affinity.R | 145 -- CHNOSZ-2.1.0/CHNOSZ/R/basis.R | 46 CHNOSZ-2.1.0/CHNOSZ/R/buffer.R | 114 - CHNOSZ-2.1.0/CHNOSZ/R/cgl.R | 17 CHNOSZ-2.1.0/CHNOSZ/R/diagram.R | 220 +-- CHNOSZ-2.1.0/CHNOSZ/R/equilibrate.R | 46 CHNOSZ-2.1.0/CHNOSZ/R/examples.R | 6 CHNOSZ-2.1.0/CHNOSZ/R/hkf.R | 4 CHNOSZ-2.1.0/CHNOSZ/R/info.R | 80 - CHNOSZ-2.1.0/CHNOSZ/R/ionize.aa.R | 32 CHNOSZ-2.1.0/CHNOSZ/R/logB.to.OBIGT.R | 4 CHNOSZ-2.1.0/CHNOSZ/R/makeup.R | 38 CHNOSZ-2.1.0/CHNOSZ/R/mix.R | 8 CHNOSZ-2.1.0/CHNOSZ/R/mosaic.R | 105 - CHNOSZ-2.1.0/CHNOSZ/R/nonideal.R | 164 +- CHNOSZ-2.1.0/CHNOSZ/R/palply.R | 4 CHNOSZ-2.1.0/CHNOSZ/R/protein.info.R | 79 - CHNOSZ-2.1.0/CHNOSZ/R/rank.affinity.R | 4 CHNOSZ-2.1.0/CHNOSZ/R/retrieve.R | 10 CHNOSZ-2.1.0/CHNOSZ/R/solubility.R | 12 CHNOSZ-2.1.0/CHNOSZ/R/species.R | 50 CHNOSZ-2.1.0/CHNOSZ/R/subcrt.R | 376 ++--- CHNOSZ-2.1.0/CHNOSZ/R/swap.basis.R | 12 CHNOSZ-2.1.0/CHNOSZ/R/taxonomy.R | 46 CHNOSZ-2.1.0/CHNOSZ/R/thermo.R | 4 CHNOSZ-2.1.0/CHNOSZ/R/util.affinity.R | 211 +- CHNOSZ-2.1.0/CHNOSZ/R/util.args.R | 2 CHNOSZ-2.1.0/CHNOSZ/R/util.array.R | 38 CHNOSZ-2.1.0/CHNOSZ/R/util.character.R | 28 CHNOSZ-2.1.0/CHNOSZ/R/util.data.R | 96 - CHNOSZ-2.1.0/CHNOSZ/R/util.expression.R | 181 +- CHNOSZ-2.1.0/CHNOSZ/R/util.fasta.R | 66 CHNOSZ-2.1.0/CHNOSZ/R/util.formula.R | 32 CHNOSZ-2.1.0/CHNOSZ/R/util.misc.R | 29 CHNOSZ-2.1.0/CHNOSZ/R/util.plot.R | 147 +- CHNOSZ-2.1.0/CHNOSZ/R/util.protein.R | 2 CHNOSZ-2.1.0/CHNOSZ/R/util.seq.R | 14 CHNOSZ-2.1.0/CHNOSZ/R/util.units.R | 108 - CHNOSZ-2.1.0/CHNOSZ/R/water.R | 22 CHNOSZ-2.1.0/CHNOSZ/R/zzz.R | 6 CHNOSZ-2.1.0/CHNOSZ/README.md |only CHNOSZ-2.1.0/CHNOSZ/build/partial.rdb |binary CHNOSZ-2.1.0/CHNOSZ/build/vignette.rds |binary CHNOSZ-2.1.0/CHNOSZ/demo/00Index | 1 CHNOSZ-2.1.0/CHNOSZ/demo/DEW.R | 3 CHNOSZ-2.1.0/CHNOSZ/demo/NaCl.R | 1 CHNOSZ-2.1.0/CHNOSZ/demo/Shh.R | 1 CHNOSZ-2.1.0/CHNOSZ/demo/TCA.R | 2 CHNOSZ-2.1.0/CHNOSZ/demo/adenine.R |only CHNOSZ-2.1.0/CHNOSZ/demo/affinity.R | 1 CHNOSZ-2.1.0/CHNOSZ/demo/aluminum.R | 2 CHNOSZ-2.1.0/CHNOSZ/demo/buffer.R | 2 CHNOSZ-2.1.0/CHNOSZ/demo/copper.R | 1 CHNOSZ-2.1.0/CHNOSZ/demo/dehydration.R | 1 CHNOSZ-2.1.0/CHNOSZ/demo/density.R | 5 CHNOSZ-2.1.0/CHNOSZ/demo/gold.R | 2 CHNOSZ-2.1.0/CHNOSZ/demo/ionize.R | 1 CHNOSZ-2.1.0/CHNOSZ/demo/lambda.R | 1 CHNOSZ-2.1.0/CHNOSZ/demo/protbuff.R | 1 CHNOSZ-2.1.0/CHNOSZ/demo/protein.equil.R | 1 CHNOSZ-2.1.0/CHNOSZ/demo/rank.affinity.R | 1 CHNOSZ-2.1.0/CHNOSZ/demo/sources.R | 1 CHNOSZ-2.1.0/CHNOSZ/inst/CHECKLIST | 8 CHNOSZ-2.1.0/CHNOSZ/inst/NEWS.Rd | 105 + CHNOSZ-2.1.0/CHNOSZ/inst/doc/FAQ.R |only CHNOSZ-2.1.0/CHNOSZ/inst/doc/FAQ.Rmd |only CHNOSZ-2.1.0/CHNOSZ/inst/doc/FAQ.html |only CHNOSZ-2.1.0/CHNOSZ/inst/doc/OBIGT.R | 42 CHNOSZ-2.1.0/CHNOSZ/inst/doc/OBIGT.Rmd | 49 CHNOSZ-2.1.0/CHNOSZ/inst/doc/OBIGT.bib | 30 CHNOSZ-2.1.0/CHNOSZ/inst/doc/OBIGT.html | 716 +++++---- CHNOSZ-2.1.0/CHNOSZ/inst/doc/anintro.R | 83 - CHNOSZ-2.1.0/CHNOSZ/inst/doc/anintro.Rmd | 116 - CHNOSZ-2.1.0/CHNOSZ/inst/doc/anintro.html | 1078 ++++++++------- CHNOSZ-2.1.0/CHNOSZ/inst/doc/custom_data.R | 17 CHNOSZ-2.1.0/CHNOSZ/inst/doc/custom_data.Rmd | 26 CHNOSZ-2.1.0/CHNOSZ/inst/doc/custom_data.html | 140 - CHNOSZ-2.1.0/CHNOSZ/inst/doc/eos-regress.R |only CHNOSZ-2.1.0/CHNOSZ/inst/doc/eos-regress.Rmd |only CHNOSZ-2.1.0/CHNOSZ/inst/doc/eos-regress.html |only CHNOSZ-2.1.0/CHNOSZ/inst/doc/equilibrium.R | 89 - CHNOSZ-2.1.0/CHNOSZ/inst/doc/equilibrium.Rmd | 52 CHNOSZ-2.1.0/CHNOSZ/inst/doc/equilibrium.html | 58 CHNOSZ-2.1.0/CHNOSZ/inst/doc/mklinks.sh | 151 +- CHNOSZ-2.1.0/CHNOSZ/inst/doc/multi-metal.R | 31 CHNOSZ-2.1.0/CHNOSZ/inst/doc/multi-metal.Rmd | 44 CHNOSZ-2.1.0/CHNOSZ/inst/doc/multi-metal.html | 78 - CHNOSZ-2.1.0/CHNOSZ/inst/extdata/OBIGT/AD.csv | 6 CHNOSZ-2.1.0/CHNOSZ/inst/extdata/OBIGT/SUPCRT92.csv | 248 +-- CHNOSZ-2.1.0/CHNOSZ/inst/extdata/OBIGT/inorganic_cr.csv | 194 +- CHNOSZ-2.1.0/CHNOSZ/inst/extdata/OBIGT/inorganic_gas.csv | 36 CHNOSZ-2.1.0/CHNOSZ/inst/extdata/OBIGT/organic_aq.csv | 52 CHNOSZ-2.1.0/CHNOSZ/inst/extdata/OBIGT/organic_cr.csv | 226 +-- CHNOSZ-2.1.0/CHNOSZ/inst/extdata/OBIGT/organic_gas.csv | 456 +++--- CHNOSZ-2.1.0/CHNOSZ/inst/extdata/OBIGT/organic_liq.csv | 242 +-- CHNOSZ-2.1.0/CHNOSZ/inst/extdata/OBIGT/refs.csv | 34 CHNOSZ-2.1.0/CHNOSZ/inst/extdata/adds/OBIGT_check.csv | 64 CHNOSZ-2.1.0/CHNOSZ/inst/extdata/thermo/stoich.csv.xz |binary CHNOSZ-2.1.0/CHNOSZ/inst/tinytest/test-AD.R | 4 CHNOSZ-2.1.0/CHNOSZ/inst/tinytest/test-DEW.R | 6 CHNOSZ-2.1.0/CHNOSZ/inst/tinytest/test-EOSregress.R |only CHNOSZ-2.1.0/CHNOSZ/inst/tinytest/test-affinity.R | 22 CHNOSZ-2.1.0/CHNOSZ/inst/tinytest/test-buffer.R | 1 CHNOSZ-2.1.0/CHNOSZ/inst/tinytest/test-info.R | 6 CHNOSZ-2.1.0/CHNOSZ/inst/tinytest/test-logmolality.R | 4 CHNOSZ-2.1.0/CHNOSZ/inst/tinytest/test-protein.info.R | 15 CHNOSZ-2.1.0/CHNOSZ/inst/tinytest/test-subcrt.R | 123 + CHNOSZ-2.1.0/CHNOSZ/inst/tinytest/test-util.R | 9 CHNOSZ-2.1.0/CHNOSZ/inst/tinytest/test-util.data.R | 16 CHNOSZ-2.1.0/CHNOSZ/man/CHNOSZ-package.Rd | 2 CHNOSZ-2.1.0/CHNOSZ/man/EOSregress.Rd |only CHNOSZ-2.1.0/CHNOSZ/man/add.OBIGT.Rd | 2 CHNOSZ-2.1.0/CHNOSZ/man/diagram.Rd | 2 CHNOSZ-2.1.0/CHNOSZ/man/examples.Rd | 8 CHNOSZ-2.1.0/CHNOSZ/man/extdata.Rd | 4 CHNOSZ-2.1.0/CHNOSZ/man/info.Rd | 2 CHNOSZ-2.1.0/CHNOSZ/man/logB.to.OBIGT.Rd | 2 CHNOSZ-2.1.0/CHNOSZ/man/mix.Rd | 16 CHNOSZ-2.1.0/CHNOSZ/man/mosaic.Rd | 2 CHNOSZ-2.1.0/CHNOSZ/man/rank.affinity.Rd | 19 CHNOSZ-2.1.0/CHNOSZ/man/solubility.Rd | 2 CHNOSZ-2.1.0/CHNOSZ/man/species.Rd | 4 CHNOSZ-2.1.0/CHNOSZ/man/subcrt.Rd | 27 CHNOSZ-2.1.0/CHNOSZ/man/swap.basis.Rd | 6 CHNOSZ-2.1.0/CHNOSZ/man/thermo.Rd | 26 CHNOSZ-2.1.0/CHNOSZ/man/util.data.Rd | 33 CHNOSZ-2.1.0/CHNOSZ/man/util.fasta.Rd | 2 CHNOSZ-2.1.0/CHNOSZ/man/util.misc.Rd | 8 CHNOSZ-2.1.0/CHNOSZ/man/util.plot.Rd | 10 CHNOSZ-2.1.0/CHNOSZ/vignettes/FAQ.Rmd |only CHNOSZ-2.1.0/CHNOSZ/vignettes/OBIGT.Rmd | 49 CHNOSZ-2.1.0/CHNOSZ/vignettes/OBIGT.bib | 30 CHNOSZ-2.1.0/CHNOSZ/vignettes/anintro.Rmd | 116 - CHNOSZ-2.1.0/CHNOSZ/vignettes/custom_data.Rmd | 26 CHNOSZ-2.1.0/CHNOSZ/vignettes/elementa.csl | 8 CHNOSZ-2.1.0/CHNOSZ/vignettes/elementa.csl.orig |only CHNOSZ-2.1.0/CHNOSZ/vignettes/eos-regress.Rmd |only CHNOSZ-2.1.0/CHNOSZ/vignettes/equilibrium.Rmd | 52 CHNOSZ-2.1.0/CHNOSZ/vignettes/mklinks.sh | 151 +- CHNOSZ-2.1.0/CHNOSZ/vignettes/multi-metal.Rmd | 44 CHNOSZ-2.1.0/CHNOSZ/vignettes/vig.bib | 209 ++ 152 files changed, 4736 insertions(+), 3803 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-17 0.9.2-5
2023-06-13 0.9.2-4
2023-05-09 0.9.2-3
2023-02-01 0.9.2-2
2023-01-21 0.9.2-1
2023-01-19 0.9.2
2021-10-31 0.9.1-5
2021-07-10 0.9.1-4
2021-04-16 0.9.1
2020-12-14 0.9.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-18 0.1.1
2024-01-10 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-27 0.0.7
2023-10-19 0.0.6
2023-06-06 0.0.5
Title: Calculate and Predict the Low Density Lipoprotein Values
Description: A wide variety of ways to calculate (through equations) or predict (using 9 Machine learning methods as well as a stack algorithm combination of them all) the Low Density Lipoprotein values of patients based on the values of three other metrics, namely Total Cholesterol , Triglycerides and High Density Lipoprotein. It can also calculate the variance of LDL and the Atherogenic Index of Plasma (AIP) using error propagation and bootstrapping.
Author: Petros Paplomatas [aut, cre],
Kostas Anagnostopoulos [aut]
Maintainer: Petros Paplomatas <P.paplomatas@hotmail.com>
Diff between LDLcalc versions 2.0 dated 2022-05-31 and 2.1 dated 2024-02-11
DESCRIPTION | 13 - MD5 | 28 +-- R/AIP.R | 75 +++++---- R/Equation_functions.R | 226 +++++++++++++++--------------- R/LDLErrorPropagation&bootstrapVariance.R | 72 +++++---- R/model.R | 8 - build/vignette.rds |binary inst/doc/Calculate_Predict_LDL.R | 4 inst/doc/Calculate_Predict_LDL.pdf |binary inst/doc/Variance_Calculation1.R | 74 ++++----- inst/doc/Variance_Calculation1.Rmd | 2 inst/doc/Variance_Calculation1.pdf |binary man/model.Rd | 4 tests/testthat/Rplots.pdf |binary vignettes/Variance_Calculation1.Rmd | 2 15 files changed, 272 insertions(+), 236 deletions(-)
Title: Analyse Biological Invasion Costs with the 'InvaCost' Database
Description: Provides an up-to-date version of the 'InvaCost' database
(<doi:10.6084/m9.figshare.12668570>) in R, and
several functions to analyse the costs of invasive alien species
(<doi:10.1111/2041-210X.13929>).
Author: Boris Leroy [cre, aut], Andrew Kramer [aut], Anne-Charlotte Vaissiere [ctb], Christophe Diagne [ctb]
Maintainer: Boris Leroy <leroy.boris@gmail.com>
Diff between invacost versions 1.1-5 dated 2023-04-14 and 1.1-6 dated 2024-02-11
invacost-1.1-5/invacost/R/calculateRawCosts.R |only invacost-1.1-5/invacost/R/costTrendOverTime.R |only invacost-1.1-5/invacost/R/invacost-deprecated.R |only invacost-1.1-5/invacost/man/calculateRawAvgCosts-deprecated.Rd |only invacost-1.1-5/invacost/man/invacost-deprecated.Rd |only invacost-1.1-5/invacost/man/rawAvgCost-deprecated.Rd |only invacost-1.1-6/invacost/DESCRIPTION | 8 ++-- invacost-1.1-6/invacost/MD5 | 18 +++------- invacost-1.1-6/invacost/NAMESPACE | 3 - invacost-1.1-6/invacost/NEWS | 8 ++++ invacost-1.1-6/invacost/R/summarizeCosts.R | 4 +- invacost-1.1-6/invacost/build/partial.rdb |binary invacost-1.1-6/invacost/man/computeAvgTotCost.Rd | 4 +- 13 files changed, 22 insertions(+), 23 deletions(-)
Title: Libraries, Data Dictionaries, and a Data Step for R
Description: Contains a set of functions to create data libraries,
generate data dictionaries, and simulate a data step.
The libname() function will load a directory of data into
a library in one line of code. The dictionary() function
will generate data dictionaries for individual
data frames or an entire library. And the datestep() function
will perform row-by-row data processing.
Author: David J. Bosak
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between libr versions 1.2.9 dated 2023-11-17 and 1.3.0 dated 2024-02-11
DESCRIPTION | 10 ++--- MD5 | 20 +++++------ NEWS.md | 5 ++ R/datastep.R | 3 + R/libr.R | 3 - R/utilities.R | 7 +++- build/vignette.rds |binary man/libr.Rd | 8 ++++ tests/testthat/test-datastep.R | 34 ++++++++++++++++++++ tests/testthat/test-libname.R | 28 ++++++++++++++++ tests/testthat/test-manipulation.R | 62 ++++++++++++++++++------------------- 11 files changed, 131 insertions(+), 49 deletions(-)