Title: Extended Generalised Linear Hidden Markov Models
Description: Fits a variety of hidden Markov models, structured
in an extended generalized linear model framework. See
T. Rolf Turner, Murray A. Cameron, and Peter J. Thomson
(1998) <doi:10.2307/3315677>, and
Rolf Turner (2008) <doi:10.1016/j.csda.2008.01.029>
and the references cited therein.
Author: Rolf Turner [aut, cre]
Maintainer: Rolf Turner <rolfturner@posteo.net>
Diff between eglhmm versions 0.1-1 dated 2023-11-01 and 0.1-3 dated 2024-02-12
eglhmm-0.1-1/eglhmm/inst/Lit |only eglhmm-0.1-1/eglhmm/inst/Notes |only eglhmm-0.1-3/eglhmm/ChangeLog | 58 +++ eglhmm-0.1-3/eglhmm/DESCRIPTION | 8 eglhmm-0.1-3/eglhmm/MD5 | 92 +++-- eglhmm-0.1-3/eglhmm/R/checkRho.R | 12 eglhmm-0.1-3/eglhmm/R/conversionStuff.R | 16 eglhmm-0.1-3/eglhmm/R/crossval.R |only eglhmm-0.1-3/eglhmm/R/doKeq1.R | 39 +- eglhmm-0.1-3/eglhmm/R/eglhmm.R | 317 ++++++++++--------- eglhmm-0.1-3/eglhmm/R/eglhmmEm.R | 15 eglhmm-0.1-3/eglhmm/R/getModComps.R | 26 - eglhmm-0.1-3/eglhmm/R/initRho.R | 20 - eglhmm-0.1-3/eglhmm/R/initialise.R | 14 eglhmm-0.1-3/eglhmm/R/llKeq1.R |only eglhmm-0.1-3/eglhmm/R/origData.R |only eglhmm-0.1-3/eglhmm/R/recurse.R | 5 eglhmm-0.1-3/eglhmm/R/reorder.eglhmm.R | 6 eglhmm-0.1-3/eglhmm/R/reviseRho.R | 24 - eglhmm-0.1-3/eglhmm/R/simMlt.R | 2 eglhmm-0.1-3/eglhmm/build/partial.rdb |binary eglhmm-0.1-3/eglhmm/build/vignette.rds |binary eglhmm-0.1-3/eglhmm/data/Bovine.rda |only eglhmm-0.1-3/eglhmm/data/Cryptosporidiosis.rda |only eglhmm-0.1-3/eglhmm/data/Downloads.rda |only eglhmm-0.1-3/eglhmm/data/EricssonB_Jul2.rda |only eglhmm-0.1-3/eglhmm/data/FattyLiver.rda |only eglhmm-0.1-3/eglhmm/data/FattyLiver2.rda |only eglhmm-0.1-3/eglhmm/data/Hanta.rda |only eglhmm-0.1-3/eglhmm/data/IPs.rda |only eglhmm-0.1-3/eglhmm/data/InfantEEGsleepstates.rda |only eglhmm-0.1-3/eglhmm/data/LegionnairesDisease.rda |only eglhmm-0.1-3/eglhmm/data/OffshoreRigcountsAlaska.rda |only eglhmm-0.1-3/eglhmm/data/PriceStability.rda |only eglhmm-0.1-3/eglhmm/data/Strikes.rda |only eglhmm-0.1-3/eglhmm/data/SydColCount.rda |binary eglhmm-0.1-3/eglhmm/data/SydColDisc.rda |binary eglhmm-0.1-3/eglhmm/data/WoodPeweeSong.rda |only eglhmm-0.1-3/eglhmm/data/ftLiardFlows.rda |only eglhmm-0.1-3/eglhmm/data/goldparticle380.rda |only eglhmm-0.1-3/eglhmm/data/linLandFlows.rda |only eglhmm-0.1-3/eglhmm/data/portMannFlows.rda |only eglhmm-0.1-3/eglhmm/data/portMannSedCon.rda |only eglhmm-0.1-3/eglhmm/data/portMannSedLoads.rda |only eglhmm-0.1-3/eglhmm/inst/doc/eglhmm.pdf |binary eglhmm-0.1-3/eglhmm/man/SydColDat.Rd | 11 eglhmm-0.1-3/eglhmm/man/bcov.Rd | 2 eglhmm-0.1-3/eglhmm/man/crossval.Rd |only eglhmm-0.1-3/eglhmm/man/eglhmm-internal.Rd | 12 eglhmm-0.1-3/eglhmm/man/eglhmm.Rd | 59 ++- eglhmm-0.1-3/eglhmm/man/hydroData.Rd |only eglhmm-0.1-3/eglhmm/man/ionChannelData.Rd | 9 eglhmm-0.1-3/eglhmm/man/monoCyteSim.Rd |only eglhmm-0.1-3/eglhmm/man/postHocGradHess.Rd | 2 eglhmm-0.1-3/eglhmm/man/weissData.Rd |only eglhmm-0.1-3/eglhmm/src/afun.f90 | 8 eglhmm-0.1-3/eglhmm/src/bfun.f90 | 7 eglhmm-0.1-3/eglhmm/src/gfun.f90 | 7 eglhmm-0.1-3/eglhmm/src/xfun.f90 | 7 59 files changed, 470 insertions(+), 308 deletions(-)
Title: Causal Batch Effects
Description: Software which provides numerous functionalities for detecting and removing group-level effects from high-dimensional scientific data which, when combined with additional assumptions, allow for causal conclusions, as-described in our manuscripts Bridgeford et al. (2024) <doi:10.1101/2021.09.03.458920> and Bridgeford et al. (2023) <arXiv:2307.13868>. Also provides a number of useful utilities for generating simulations and balancing covariates across multiple groups/batches of data via matching and propensity trimming for more than two groups.
Author: Eric W. Bridgeford [aut, cre],
Michael Powell [ctb],
Brian Caffo [ctb],
Joshua T. Vogelstein [ctb]
Maintainer: Eric W. Bridgeford <ericwb95@gmail.com>
Diff between causalBatch versions 1.0 dated 2024-01-24 and 1.1 dated 2024-02-12
DESCRIPTION | 8 +++--- MD5 | 24 ++++++++++---------- R/causal_ccombat.R | 17 +++++++++----- inst/CITATION | 3 -- inst/doc/causal_balancing.html | 10 ++++---- inst/doc/causal_ccombat.html | 22 ++++++++----------- inst/doc/causal_cdcorr.html | 6 ++--- inst/doc/causal_simulations.html | 28 ++++++++++++------------ man/cb.align.kway_match.Rd | 7 ++++-- man/cb.align.vm_trim.Rd | 2 - man/cb.correct.caus_cComBat.Rd | 3 ++ tests/testthat/test-kway_match.R | 39 +++++++++++++++++++--------------- tests/testthat/test-vector_matching.R | 30 ++++++++++++++------------ 13 files changed, 108 insertions(+), 91 deletions(-)
Title: Joint Feature Screening via Sparse MLE
Description: Feature screening is a powerful tool in processing ultrahigh dimensional data. It attempts to screen out most irrelevant features in preparation for a more elaborate analysis. Xu and Chen (2014)<doi:10.1080/01621459.2013.879531> proposed an effective screening method SMLE, which naturally incorporates the joint effects among features in the screening process. This package provides an efficient implementation of SMLE-screening for high-dimensional linear, logistic, and Poisson models. The package also provides a function for conducting accurate post-screening feature selection based on an iterative hard-thresholding procedure and a user-specified selection criterion.
Author: Qianxiang Zang [aut, cre],
Chen Xu [aut],
Kelly Burkett [aut],
Maintainer: Qianxiang Zang <qzang023@uottawa.ca>
Diff between SMLE versions 2.1-0 dated 2023-01-21 and 2.1-1 dated 2024-02-12
DESCRIPTION | 6 +++--- MD5 | 4 ++-- man/SMLE-package.Rd | 8 ++++---- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: An Implementation of Matrix Mathematics that Respects Row and
Column Names
Description: An implementation of matrix mathematics wherein operations are performed "by name."
Author: Matthew Heun [aut, cre]
Maintainer: Matthew Heun <matthew.heun@me.com>
Diff between matsbyname versions 0.6.9 dated 2024-01-30 and 0.6.10 dated 2024-02-12
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 16 ++++++++++++++++ inst/CITATION | 4 ++-- inst/doc/aggregation-vignette.html | 4 ++-- inst/doc/applybyname-vignette.html | 4 ++-- inst/doc/matsbyname.html | 4 ++-- tests/testthat/test-performance.R | 3 ++- 8 files changed, 37 insertions(+), 20 deletions(-)
Title: Change Point Tests for Joint Distributions and Copulas
Description: Change point tests for joint distributions and copulas using pseudo-observations with multipliers or bootstrap. The processes used here have been defined in Bucher, Kojadinovic, Rohmer & Segers <doi:10.1016/j.jmva.2014.07.012> and Nasri & Remillard <doi:10.1016/j.jmva.2019.03.002>.
Author: Bouchra R Nasri [aut],
Bruno N Remillard [aut, cre, cph]
Maintainer: Bruno N Remillard <bruno.remillard@hec.ca>
Diff between changepointTests versions 0.1.1 dated 2021-07-27 and 0.1.5 dated 2024-02-12
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/multiplierDNonSeqfun.R | 10 +++++++--- R/multiplierDSeqfun.R | 8 +++++--- R/test.change.point.R | 2 +- R/test.change.point.copula.BKRS.R | 2 +- man/multiplierDNonSeqfun.Rd | 14 +++++++++++--- man/multiplierDSeqfun.Rd | 10 +++++++--- man/test.change.point.Rd | 2 +- man/test.change.point.copula.BKRS.Rd | 2 +- 10 files changed, 47 insertions(+), 29 deletions(-)
More information about changepointTests at CRAN
Permanent link
Title: Easily Harvest (Scrape) Web Pages
Description: Wrappers around the 'xml2' and 'httr' packages to make it
easy to download, then manipulate, HTML and XML.
Author: Hadley Wickham [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between rvest versions 1.0.3 dated 2022-08-19 and 1.0.4 dated 2024-02-12
rvest-1.0.3/rvest/R/testthat.R |only rvest-1.0.4/rvest/DESCRIPTION | 29 rvest-1.0.4/rvest/LICENSE | 2 rvest-1.0.4/rvest/MD5 | 108 +- rvest-1.0.4/rvest/NAMESPACE | 5 rvest-1.0.4/rvest/NEWS.md | 9 rvest-1.0.4/rvest/R/encoding.R | 2 rvest-1.0.4/rvest/R/form.R | 51 - rvest-1.0.4/rvest/R/html.R | 3 rvest-1.0.4/rvest/R/import-standalone-obj-type.R |only rvest-1.0.4/rvest/R/import-standalone-types-check.R |only rvest-1.0.4/rvest/R/live.R |only rvest-1.0.4/rvest/R/rvest-package.R | 44 + rvest-1.0.4/rvest/R/selectors.R | 15 rvest-1.0.4/rvest/R/session.R | 40 - rvest-1.0.4/rvest/R/sysdata.rda |only rvest-1.0.4/rvest/R/table.R | 10 rvest-1.0.4/rvest/R/text.R | 3 rvest-1.0.4/rvest/R/utils.R | 6 rvest-1.0.4/rvest/R/zzz.R |only rvest-1.0.4/rvest/README.md | 4 rvest-1.0.4/rvest/build/vignette.rds |binary rvest-1.0.4/rvest/inst/WORDLIST | 44 - rvest-1.0.4/rvest/inst/doc/rvest.R | 2 rvest-1.0.4/rvest/inst/doc/rvest.Rmd | 2 rvest-1.0.4/rvest/inst/doc/rvest.html | 456 +++++------- rvest-1.0.4/rvest/inst/doc/starwars.R | 2 rvest-1.0.4/rvest/inst/doc/starwars.html | 14 rvest-1.0.4/rvest/man/LiveHTML.Rd |only rvest-1.0.4/rvest/man/figures/lifecycle-archived.svg | 22 rvest-1.0.4/rvest/man/figures/lifecycle-defunct.svg | 22 rvest-1.0.4/rvest/man/figures/lifecycle-deprecated.svg | 22 rvest-1.0.4/rvest/man/figures/lifecycle-experimental.svg | 22 rvest-1.0.4/rvest/man/figures/lifecycle-maturing.svg | 22 rvest-1.0.4/rvest/man/figures/lifecycle-questioning.svg | 22 rvest-1.0.4/rvest/man/figures/lifecycle-soft-deprecated.svg |only rvest-1.0.4/rvest/man/figures/lifecycle-stable.svg | 30 rvest-1.0.4/rvest/man/figures/lifecycle-superseded.svg | 22 rvest-1.0.4/rvest/man/figures/logo.png |binary rvest-1.0.4/rvest/man/read_html.Rd |only rvest-1.0.4/rvest/man/read_html_live.Rd |only rvest-1.0.4/rvest/man/reexports.Rd | 3 rvest-1.0.4/rvest/man/rvest-package.Rd | 4 rvest-1.0.4/rvest/tests/testthat/_snaps/encoding.md | 6 rvest-1.0.4/rvest/tests/testthat/_snaps/form.md | 51 - rvest-1.0.4/rvest/tests/testthat/_snaps/html.md |only rvest-1.0.4/rvest/tests/testthat/_snaps/live.md |only rvest-1.0.4/rvest/tests/testthat/_snaps/rename.md | 20 rvest-1.0.4/rvest/tests/testthat/_snaps/selectors.md | 12 rvest-1.0.4/rvest/tests/testthat/_snaps/session.md | 25 rvest-1.0.4/rvest/tests/testthat/_snaps/table.md | 10 rvest-1.0.4/rvest/tests/testthat/helper.R |only rvest-1.0.4/rvest/tests/testthat/html |only rvest-1.0.4/rvest/tests/testthat/test-encoding.R | 2 rvest-1.0.4/rvest/tests/testthat/test-form.R | 15 rvest-1.0.4/rvest/tests/testthat/test-html.R | 9 rvest-1.0.4/rvest/tests/testthat/test-live.R |only rvest-1.0.4/rvest/tests/testthat/test-session.R | 2 rvest-1.0.4/rvest/tests/testthat/test-table.R | 12 rvest-1.0.4/rvest/vignettes/rvest.Rmd | 2 60 files changed, 768 insertions(+), 440 deletions(-)
Title: Weighted Cox-Regression for Nested Case-Control Data
Description: Fit Cox proportional hazard models with a weighted
partial likelihood. It handles one or multiple endpoints, additional matching
and makes it possible to reuse controls for other endpoints
Stoer NC and Samuelsen SO (2016) <doi:10.32614/rj-2016-030>.
Author: Nathalie C. Stoer, Sven Ove Samuelsen
Maintainer: Nathalie C. Stoer <nathalie.c.stoer@kreftregisteret.no>
Diff between multipleNCC versions 1.2-3 dated 2023-07-09 and 1.2-4 dated 2024-02-12
multipleNCC-1.2-3/multipleNCC/R/wpl8.R |only multipleNCC-1.2-3/multipleNCC/R/wpl9.R |only multipleNCC-1.2-4/multipleNCC/DESCRIPTION | 8 ++++---- multipleNCC-1.2-4/multipleNCC/MD5 | 5 ++--- multipleNCC-1.2-4/multipleNCC/R/wpl10.r |only 5 files changed, 6 insertions(+), 7 deletions(-)
Title: M-Quantile Regression Coefficients Modeling
Description: Parametric modeling of M-quantile regression coefficient functions.
Author: Paolo Frumento <paolo.frumento@unipi.it>
Maintainer: Paolo Frumento <paolo.frumento@unipi.it>
Diff between Mqrcm versions 1.2 dated 2021-02-01 and 1.3 dated 2024-02-12
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NEWS.md | 9 ++++----- man/Mqrcm-internal.Rd | 30 ++++++++++++++++++++++++++++++ man/Mqrcm-package.Rd | 4 ++-- man/iMqr.Rd | 2 +- 6 files changed, 48 insertions(+), 19 deletions(-)
Title: Kernel Operations on GPU or CPU, with Autodiff, without Memory
Overflows
Description: The 'KeOps' library lets you compute generic reductions of
very large arrays whose entries are given by a mathematical formula
with CPU and GPU computing support. It combines a tiled reduction
scheme with an automatic differentiation engine. It is perfectly
suited to the efficient computation of Kernel dot products and the
associated gradients, even when the full kernel matrix does not fit
into the GPU memory.
Author: Ghislain Durif [aut, cre] ,
Amelie Vernay [aut] ,
Chloe Serre-Combe [aut] ,
Benjamin Charlier [aut] ,
Jean Feydy [aut] ,
Joan A. Glaunes [aut] ,
Francois-David Collin [ctb]
Maintainer: Ghislain Durif <gd.dev@libertymail.net>
Diff between rkeops versions 1.4.2.2 dated 2021-02-17 and 2.2.2 dated 2024-02-12
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Title: Censored and Truncated Quantile Regression
Description: Estimation of quantile regression models for survival data.
Author: Paolo Frumento
Maintainer: Paolo Frumento <paolo.frumento@unipi.it>
Diff between ctqr versions 2.0 dated 2021-02-01 and 2.1 dated 2024-02-12
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 16 +++++----------- R/A1_main_function.R | 20 ++++++++++++-------- man/ctqr-internal.Rd | 29 ++++++++++++++++++++++++++++- man/ctqr-package.Rd | 9 ++++----- man/ctqr.Rd | 12 +++--------- 7 files changed, 64 insertions(+), 46 deletions(-)
Title: Ab Initio Uncertainty Quantification
Description: Uncertainty quantification and inverse estimation by probabilistic generative models from the beginning of the data analysis. An example is a Fourier basis method for inverse estimation in scattering analysis of microscopy videos. It does not require specifying a certain range of Fourier bases and it substantially reduces computational cost via the generalized Schur algorithm. See the reference: Mengyang Gu, Yue He, Xubo Liu and Yimin Luo (2023), <arXiv:2309.02468>.
Author: Yue He [aut],
Xubo Liu [aut],
Mengyang Gu [aut, cre]
Maintainer: Mengyang Gu <mengyang@pstat.ucsb.edu>
Diff between AIUQ versions 0.5.0 dated 2023-11-14 and 0.5.1 dated 2024-02-12
AIUQ-0.5.0/AIUQ/man/AIUQ-package.Rd |only AIUQ-0.5.0/AIUQ/man/get_Dqt.Rd |only AIUQ-0.5.1/AIUQ/CHANGELOG |only AIUQ-0.5.1/AIUQ/DESCRIPTION | 6 AIUQ-0.5.1/AIUQ/MD5 | 64 AIUQ-0.5.1/AIUQ/NAMESPACE | 20 AIUQ-0.5.1/AIUQ/R/SAM.R | 148 AIUQ-0.5.1/AIUQ/R/aniso_SAM.R |only AIUQ-0.5.1/AIUQ/R/aniso_simulation.R |only AIUQ-0.5.1/AIUQ/R/functions.R | 1966 +++++++++- AIUQ-0.5.1/AIUQ/R/simulation.R | 43 AIUQ-0.5.1/AIUQ/R/structure.R | 206 - AIUQ-0.5.1/AIUQ/build/partial.rdb |binary AIUQ-0.5.1/AIUQ/man/FFT2D.Rd | 6 AIUQ-0.5.1/AIUQ/man/SAM-class.Rd | 16 AIUQ-0.5.1/AIUQ/man/SAM.Rd | 32 AIUQ-0.5.1/AIUQ/man/SAM_Dqt.Rd |only AIUQ-0.5.1/AIUQ/man/aniso_SAM-class.Rd |only AIUQ-0.5.1/AIUQ/man/aniso_SAM.Rd |only AIUQ-0.5.1/AIUQ/man/aniso_simulation-class.Rd |only AIUQ-0.5.1/AIUQ/man/aniso_simulation.Rd |only AIUQ-0.5.1/AIUQ/man/anisotropic_bm_particle_intensity.Rd |only AIUQ-0.5.1/AIUQ/man/anisotropic_fbm_ou_particle_intensity.Rd |only AIUQ-0.5.1/AIUQ/man/anisotropic_fbm_particle_intensity.Rd |only AIUQ-0.5.1/AIUQ/man/anisotropic_log_lik.Rd |only AIUQ-0.5.1/AIUQ/man/anisotropic_log_lik_grad.Rd |only AIUQ-0.5.1/AIUQ/man/anisotropic_numerical_msd.Rd |only AIUQ-0.5.1/AIUQ/man/anisotropic_ou_particle_intensity.Rd |only AIUQ-0.5.1/AIUQ/man/bm_particle_intensity.Rd | 8 AIUQ-0.5.1/AIUQ/man/fbm_particle_intensity.Rd | 1 AIUQ-0.5.1/AIUQ/man/get_dqt.Rd |only AIUQ-0.5.1/AIUQ/man/get_est_parameters_MSD_SAM_interval_anisotropic.Rd |only AIUQ-0.5.1/AIUQ/man/get_isf.Rd |only AIUQ-0.5.1/AIUQ/man/get_true_param_aniso_sim.Rd |only AIUQ-0.5.1/AIUQ/man/intensity_format_transform.Rd | 21 AIUQ-0.5.1/AIUQ/man/modeled_dqt.Rd |only AIUQ-0.5.1/AIUQ/man/modeled_isf.Rd |only AIUQ-0.5.1/AIUQ/man/numerical_msd.Rd | 3 AIUQ-0.5.1/AIUQ/man/ou_particle_intensity.Rd | 8 AIUQ-0.5.1/AIUQ/man/param_uncertainty_anisotropic.Rd |only AIUQ-0.5.1/AIUQ/man/plot_MSD.Rd | 10 AIUQ-0.5.1/AIUQ/man/plot_intensity.Rd | 5 AIUQ-0.5.1/AIUQ/man/show.aniso_sam.Rd |only AIUQ-0.5.1/AIUQ/man/show.aniso_simulation.Rd |only AIUQ-0.5.1/AIUQ/man/simulation-class.Rd | 6 AIUQ-0.5.1/AIUQ/man/simulation.Rd | 7 46 files changed, 2253 insertions(+), 323 deletions(-)
Title: Calculation of Slope-Dependant Accumulated Cost Surface,
Least-Cost Paths, Least-Cost Corridors, Least-Cost Networks
Related to Human Movement Across the Landscape
Description: Provides the facility to calculate non-isotropic accumulated cost surface, least-cost paths, least-cost corridors, least-cost networks using a number of human-movement-related cost functions that can be selected by the user. It just requires a Digital Terrain Model, a start location and (optionally) destination locations. See Alberti (2019) <doi:10.1016/j.softx.2019.100331>.
Author: Gianmarco Alberti [aut, cre]
Maintainer: Gianmarco Alberti <gianmarcoalberti@gmail.com>
Diff between movecost versions 2.0 dated 2023-04-12 and 2.1 dated 2024-02-12
DESCRIPTION | 6 +++--- MD5 | 38 +++++++++++++++++++------------------- NEWS.md | 11 ++++++----- R/create_barrier_cs.R | 2 +- R/movealloc.r | 11 ++++++----- R/movebound.r | 11 ++++++----- R/movecomp.r | 11 ++++++----- R/movecorr.r | 19 ++++++++++--------- R/movecost.r | 25 +++++++++++++------------ R/movenetw.r | 25 +++++++++++++------------ R/moverank.r | 9 +++++---- README.md | 8 +++++++- man/create_barrier_cs.Rd | 4 ++-- man/movealloc.Rd | 11 ++++++----- man/movebound.Rd | 11 ++++++----- man/movecomp.Rd | 11 ++++++----- man/movecorr.Rd | 19 ++++++++++--------- man/movecost.Rd | 25 +++++++++++++------------ man/movenetw.Rd | 25 +++++++++++++------------ man/moverank.Rd | 9 +++++---- 20 files changed, 156 insertions(+), 135 deletions(-)
Title: Bayesian Aggregate Treatment Effects
Description: Running and comparing meta-analyses of data with hierarchical
Bayesian models in Stan, including convenience functions for formatting
data, plotting and pooling measures specific to meta-analysis. This implements many models
from Meager (2019) <doi:10.1257/app.20170299>.
Author: Witold Wiecek [cre, aut],
Rachael Meager [aut],
Brice Green [ctb] ,
Danny Toomey [ctb] ,
Trustees of Columbia University [cph]
Maintainer: Witold Wiecek <witold.wiecek@gmail.com>
Diff between baggr versions 0.7.6 dated 2023-03-22 and 0.7.8 dated 2024-02-12
baggr-0.7.6/baggr/R/intervals_proto.R |only baggr-0.7.6/baggr/src/Makevars |only baggr-0.7.8/baggr/DESCRIPTION | 19 baggr-0.7.8/baggr/MD5 | 88 baggr-0.7.8/baggr/NAMESPACE | 6 baggr-0.7.8/baggr/NEWS.md | 24 baggr-0.7.8/baggr/R/baggr.R | 18 baggr-0.7.8/baggr/R/baggr_compare.R | 84 baggr-0.7.8/baggr/R/baggr_plot.R | 130 - baggr-0.7.8/baggr/R/bubble.R |only baggr-0.7.8/baggr/R/convert_inputs.R | 4 baggr-0.7.8/baggr/R/effect_draw.R | 2 baggr-0.7.8/baggr/R/forest_plot.R | 5 baggr-0.7.8/baggr/R/group_effects.R | 29 baggr-0.7.8/baggr/R/helpers.R |only baggr-0.7.8/baggr/R/loocv.R | 42 baggr-0.7.8/baggr/R/print_baggr.R | 32 baggr-0.7.8/baggr/R/trt_effects.R | 31 baggr-0.7.8/baggr/configure.win | 3 baggr-0.7.8/baggr/inst/doc/baggr.R | 14 baggr-0.7.8/baggr/inst/doc/baggr.html | 240 +- baggr-0.7.8/baggr/inst/doc/baggr_binary.html | 707 +++--- baggr-0.7.8/baggr/inst/stan/logit.stan | 18 baggr-0.7.8/baggr/inst/stan/mutau.stan | 22 baggr-0.7.8/baggr/inst/stan/mutau_full.stan | 20 baggr-0.7.8/baggr/inst/stan/rubin.stan | 6 baggr-0.7.8/baggr/inst/stan/rubin_full.stan | 22 baggr-0.7.8/baggr/man/add_color_to_plot.Rd |only baggr-0.7.8/baggr/man/baggr.Rd | 15 baggr-0.7.8/baggr/man/baggr_plot.Rd | 35 baggr-0.7.8/baggr/man/bubble.Rd |only baggr-0.7.8/baggr/man/effect_plot.Rd | 2 baggr-0.7.8/baggr/man/group_effects.Rd | 14 baggr-0.7.8/baggr/man/loo_compare.Rd | 22 baggr-0.7.8/baggr/man/plot.baggr_compare.Rd | 2 baggr-0.7.8/baggr/man/random_effects.Rd | 4 baggr-0.7.8/baggr/man/single_comp_plot.Rd | 4 baggr-0.7.8/baggr/man/treatment_effect.Rd | 34 baggr-0.7.8/baggr/src/Makevars.win | 7 baggr-0.7.8/baggr/src/stanExports_logit.h | 2438 ++++++++++----------- baggr-0.7.8/baggr/src/stanExports_mutau.h | 2272 ++++++++++---------- baggr-0.7.8/baggr/src/stanExports_mutau_full.h | 2831 ++++++++++++------------- baggr-0.7.8/baggr/src/stanExports_rubin.h | 1757 +++++++-------- baggr-0.7.8/baggr/src/stanExports_rubin_full.h | 2554 +++++++++++----------- baggr-0.7.8/baggr/tests/testthat/Rplots.pdf |binary baggr-0.7.8/baggr/tests/testthat/test_binary.R | 8 baggr-0.7.8/baggr/tests/testthat/test_mutau.R | 6 baggr-0.7.8/baggr/tests/testthat/test_rubin.R | 24 48 files changed, 6849 insertions(+), 6746 deletions(-)
Title: Get Images Out of DICOM Format Quickly
Description: Provides tools to sort DICOM-format medical image files, and
convert them to NIfTI-1 format.
Author: Jon Clayden [aut, cre] ,
Chris Rorden [aut],
Martin J Fiedler [cph],
Cong Xu [cph],
Pascal Gloor [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between divest versions 0.10.3 dated 2023-01-07 and 1.0.0 dated 2024-02-12
divest-0.10.3/divest/tests/test-all.R |only divest-0.10.3/divest/tests/testthat |only divest-1.0.0/divest/DESCRIPTION | 13 divest-1.0.0/divest/LICENCE | 2 divest-1.0.0/divest/MD5 | 57 divest-1.0.0/divest/NAMESPACE | 5 divest-1.0.0/divest/NEWS | 19 divest-1.0.0/divest/R/attribs.R |only divest-1.0.0/divest/R/menu.R |only divest-1.0.0/divest/R/read.R | 249 + divest-1.0.0/divest/README.md | 124 divest-1.0.0/divest/build |only divest-1.0.0/divest/configure | 2673 +++++++------------ divest-1.0.0/divest/configure.ac | 11 divest-1.0.0/divest/inst/tinytest |only divest-1.0.0/divest/man/bidsJson.Rd |only divest-1.0.0/divest/man/imageAttributes.Rd |only divest-1.0.0/divest/man/readDicom.Rd | 30 divest-1.0.0/divest/src/ImageList.h | 106 divest-1.0.0/divest/src/Makevars.in | 2 divest-1.0.0/divest/src/Makevars.win | 2 divest-1.0.0/divest/src/dcm2niix/miniz.c |only divest-1.0.0/divest/src/dcm2niix/nii_dicom.cpp | 1109 ++++++- divest-1.0.0/divest/src/dcm2niix/nii_dicom.h | 51 divest-1.0.0/divest/src/dcm2niix/nii_dicom_batch.cpp | 2554 +++++++++++++++--- divest-1.0.0/divest/src/dcm2niix/nii_dicom_batch.h | 62 divest-1.0.0/divest/src/dcm2niix/nii_foreign.cpp | 2 divest-1.0.0/divest/src/dcm2niix/nii_foreign.h | 4 divest-1.0.0/divest/src/main.cpp | 45 divest-1.0.0/divest/tests/tinytest.R |only 30 files changed, 4515 insertions(+), 2605 deletions(-)
Title: Headless Chrome Web Browser Interface
Description: An implementation of the 'Chrome DevTools Protocol', for
controlling a headless Chrome web browser.
Author: Winston Chang [aut, cre],
Barret Schloerke [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Winston Chang <winston@posit.co>
Diff between chromote versions 0.1.2 dated 2023-08-11 and 0.2.0 dated 2024-02-12
DESCRIPTION | 10 - MD5 | 34 ++-- NEWS.md | 22 ++ R/browser.R | 5 R/chrome.R | 4 R/chromote.R | 200 ++++++++++++++++++--------- R/chromote_session.R | 206 ++++++++++++++++++++-------- R/screenshot.R | 76 +++++++--- R/utils.R | 4 README.md | 27 +++ man/Browser.Rd | 19 +- man/Chrome.Rd | 8 - man/ChromeRemote.Rd | 5 man/Chromote.Rd | 80 +++++++++- man/ChromoteSession.Rd | 111 +++++++++++---- man/default_chrome_args.Rd | 16 +- tests/testthat/helper.R |only tests/testthat/test-chromote_session.R |only tests/testthat/test-default_chromote_args.R | 2 19 files changed, 609 insertions(+), 220 deletions(-)
Title: Simple and Configurable Tables in 'HTML', 'LaTeX', 'Markdown',
'Word', 'PNG', 'PDF', and 'Typst' Formats
Description: Create highly customized tables with this simple and dependency-free package. Data frames can be converted to 'HTML', 'LaTeX', 'Markdown', 'Word', 'PNG', 'PDF', or 'Typst' tables. The user interface is minimalist and easy to learn. The syntax concise. 'HTML' tables can be customized using the flexible 'Bootstrap' framework, and 'LaTeX' code with the 'tabularray' package.
Author: Vincent Arel-Bundock [aut, cre]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between tinytable versions 0.0.4 dated 2024-02-11 and 0.0.5 dated 2024-02-12
DESCRIPTION | 10 ++-- MD5 | 33 +++++++------- NEWS.md | 5 ++ R/escape.R | 5 ++ R/format_tt.R | 2 build/partial.rdb |binary inst/templates/bootstrap.html | 9 +++ inst/tinytest/_tinysnapshot/escape-html.txt | 2 inst/tinytest/_tinysnapshot/group_tt-html_tutorial_01.rds |only inst/tinytest/_tinysnapshot/html-heatmap.rds |binary inst/tinytest/_tinysnapshot/html-issue58.rds |binary inst/tinytest/_tinysnapshot/html-issue88.rds |binary inst/tinytest/_tinysnapshot/html-issue92.rds |binary inst/tinytest/_tinysnapshot/html-striped.rds |binary inst/tinytest/_tinysnapshot/html-striped_orange.rds |binary inst/tinytest/_tinysnapshot/html-vectorized_color_j.rds |binary inst/tinytest/helpers.R | 9 +++ inst/tinytest/test-group_tt.R | 14 +++++ 18 files changed, 67 insertions(+), 22 deletions(-)
Title: Working with many R Folders Within an R Package
Description: Allows developers to work with many R folders inside a package. It offers functionalities to transfer R scripts (saved outside the R folder) into
the R folder while making additional checks.
Author: Mohamed El Fodil Ihaddaden [aut, cre]
Maintainer: Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>
Diff between rfold versions 0.1.0 dated 2023-11-02 and 0.2.0 dated 2024-02-12
DESCRIPTION | 12 ++-- MD5 | 8 +- NEWS.md | 7 ++ R/main.R | 178 ++++++++++++++++++++++++++++++++++++++++-------------------- README.md | 123 ++++++++++++++++++++++++++++++++++++++--- 5 files changed, 252 insertions(+), 76 deletions(-)
Title: Estimation of Fuzzy Poverty Measures
Description: Estimates fuzzy measures of poverty and deprivation. It also estimates the sampling variance of these measures using bootstrap or jackknife repeated replications.
Author: Federico Crescenzi [aut, cre] ,
Lorenzo Mori [aut] ,
Gianni Betti [ctb]
Maintainer: Federico Crescenzi <federico.crescenzi@unitus.it>
Diff between FuzzyPovertyR versions 1.1.0 dated 2023-10-31 and 2.0.0 dated 2024-02-12
FuzzyPovertyR-1.1.0/FuzzyPovertyR/inst/doc/vignette.R |only FuzzyPovertyR-1.1.0/FuzzyPovertyR/inst/doc/vignette.Rmd |only FuzzyPovertyR-1.1.0/FuzzyPovertyR/inst/doc/vignette.html |only FuzzyPovertyR-1.1.0/FuzzyPovertyR/vignettes/vignette.Rmd |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/DESCRIPTION | 11 - FuzzyPovertyR-2.0.0/FuzzyPovertyR/MD5 | 104 +++++----- FuzzyPovertyR-2.0.0/FuzzyPovertyR/NAMESPACE | 11 + FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/FuzzyPovertyR-package.R | 3 FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/FuzzyPoverty_class.R |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/eq_predicate.R | 4 FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/eusilc-data.R | 12 - FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fm_FL.R |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fm_ZBM.R | 35 ++- FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fm_belhadj2011.R | 14 + FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fm_belhadj2015.R | 18 + FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fm_chakravarty.R | 17 + FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fm_construct.R | 26 +- FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fm_cz.R | 14 + FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fm_mu.R | 1 FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fm_tfr.R | 2 FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fm_var.R | 40 ++- FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fm_verma.R | 2 FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fm_verma2.R | 2 FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fs_construct.R | 16 - FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fs_construct_all.R |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fs_equate.R | 2 FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fs_order.R | 2 FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fs_plot.R |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fs_summary.R |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fs_transform.R | 4 FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fs_var.R | 24 +- FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/fs_weight.R | 16 - FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/globals.R | 6 FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/plot_method.R |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/R/summary_method.R |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/build/vignette.rds |binary FuzzyPovertyR-2.0.0/FuzzyPovertyR/inst/doc/FuzzyPovertyR.R |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/inst/doc/FuzzyPovertyR.Rmd |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/inst/doc/FuzzyPovertyR.html |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/FN.Rd | 2 FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/FuzzyPoverty.Rd |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/FuzzySupplementary.Rd |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/bootP.Rd | 4 FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/eq_predicate.Rd | 4 FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/eusilc.Rd | 12 - FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fm_Chakravarty.Rd | 4 FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fm_FL.Rd |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fm_ZBM.Rd | 6 FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fm_belhadj2011.Rd | 4 FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fm_belhadj2015.Rd | 4 FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fm_cerioli.Rd | 4 FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fm_construct.Rd | 17 - FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fm_var.Rd | 13 - FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fs_construct.Rd | 4 FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fs_construct_all.Rd |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fs_order.Rd | 2 FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fs_transform.Rd | 2 FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fs_var.Rd | 6 FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/fs_weight.Rd | 4 FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/plot.FuzzyMonetary.Rd |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/plot.FuzzySupplementary.Rd |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/summary.FuzzyMonetary.Rd |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/man/summary.FuzzySupplementary.Rd |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/tests |only FuzzyPovertyR-2.0.0/FuzzyPovertyR/vignettes/FuzzyPovertyR.Rmd |only 65 files changed, 291 insertions(+), 187 deletions(-)
Title: Download Mexico City Pollution, Wind, and Temperature Data
Description: Tools for downloading hourly averages, daily maximums and
minimums from each of the pollution, wind, and temperature measuring
stations or geographic zones in the Mexico City metro area. The
package also includes the locations of each of the stations and zones.
See <http://aire.cdmx.gob.mx/> for more information.
Author: Diego Valle-Jones [aut, cre]
Maintainer: Diego Valle-Jones <diego@diegovalle.net>
Diff between aire.zmvm versions 0.8.2 dated 2019-03-30 and 0.9.0 dated 2024-02-12
aire.zmvm-0.8.2/aire.zmvm/R/aire.zmvm.R |only aire.zmvm-0.8.2/aire.zmvm/man/aire.zmvm-deprecated.Rd |only aire.zmvm-0.8.2/aire.zmvm/man/aire.zmvm.Rd |only aire.zmvm-0.8.2/aire.zmvm/man/dot-convert_time.Rd |only aire.zmvm-0.8.2/aire.zmvm/man/dot-download_current_station_data.Rd |only aire.zmvm-0.8.2/aire.zmvm/man/dot-download_data.Rd |only aire.zmvm-0.8.2/aire.zmvm/man/dot-download_data_zone.Rd |only aire.zmvm-0.8.2/aire.zmvm/man/dot-download_old_station_data.Rd |only aire.zmvm-0.9.0/aire.zmvm/DESCRIPTION | 35 ++-- aire.zmvm-0.9.0/aire.zmvm/MD5 | 79 ++++----- aire.zmvm-0.9.0/aire.zmvm/NEWS.md | 15 + aire.zmvm-0.9.0/aire.zmvm/R/aire.zmvm-deprecated.R | 19 +- aire.zmvm-0.9.0/aire.zmvm/R/aire.zmvm-package.R |only aire.zmvm-0.9.0/aire.zmvm/R/convert_to_imeca.R | 16 - aire.zmvm-0.9.0/aire.zmvm/R/convert_to_index.R | 26 +-- aire.zmvm-0.9.0/aire.zmvm/R/download_archives.R | 78 ++++----- aire.zmvm-0.9.0/aire.zmvm/R/get_latest_imeca.R | 24 +- aire.zmvm-0.9.0/aire.zmvm/R/get_station_data.R | 83 +++++----- aire.zmvm-0.9.0/aire.zmvm/R/get_station_imeca.R | 34 ++-- aire.zmvm-0.9.0/aire.zmvm/R/get_zone_imeca.R | 55 ++++-- aire.zmvm-0.9.0/aire.zmvm/R/stations.R | 4 aire.zmvm-0.9.0/aire.zmvm/R/utils.R | 5 aire.zmvm-0.9.0/aire.zmvm/R/zones.R | 4 aire.zmvm-0.9.0/aire.zmvm/man/aire.zmvm-package.Rd |only aire.zmvm-0.9.0/aire.zmvm/man/convert_to_imeca.Rd | 19 +- aire.zmvm-0.9.0/aire.zmvm/man/convert_to_index.Rd | 29 +-- aire.zmvm-0.9.0/aire.zmvm/man/deprecated.Rd |only aire.zmvm-0.9.0/aire.zmvm/man/download_24hr_average.Rd | 8 aire.zmvm-0.9.0/aire.zmvm/man/download_deposition.Rd | 12 - aire.zmvm-0.9.0/aire.zmvm/man/download_lead.Rd | 8 aire.zmvm-0.9.0/aire.zmvm/man/download_meteorological.Rd | 2 aire.zmvm-0.9.0/aire.zmvm/man/download_pollution.Rd | 2 aire.zmvm-0.9.0/aire.zmvm/man/download_pressure.Rd | 2 aire.zmvm-0.9.0/aire.zmvm/man/download_radiation.Rd | 8 aire.zmvm-0.9.0/aire.zmvm/man/figures/README-unnamed-chunk-2-1.png |binary aire.zmvm-0.9.0/aire.zmvm/man/get_latest_imeca.Rd | 11 - aire.zmvm-0.9.0/aire.zmvm/man/get_station_data.Rd | 45 ++--- aire.zmvm-0.9.0/aire.zmvm/man/get_station_imeca.Rd | 20 +- aire.zmvm-0.9.0/aire.zmvm/man/get_station_month_data.Rd | 39 ++-- aire.zmvm-0.9.0/aire.zmvm/man/get_zone_imeca.Rd | 54 +++--- aire.zmvm-0.9.0/aire.zmvm/man/stations.Rd | 10 - aire.zmvm-0.9.0/aire.zmvm/man/zones.Rd | 10 - aire.zmvm-0.9.0/aire.zmvm/tests/testthat/test_download_archives.R | 16 + aire.zmvm-0.9.0/aire.zmvm/tests/testthat/test_get_station_data.R | 35 ++-- aire.zmvm-0.9.0/aire.zmvm/tests/testthat/test_get_station_imeca.R | 4 aire.zmvm-0.9.0/aire.zmvm/tests/testthat/test_idw360.R | 1 46 files changed, 456 insertions(+), 356 deletions(-)
Title: Extend the 'copula' Package with Families and Models from
'VineCopula'
Description: Provides new classes for (rotated) BB1, BB6, BB7, BB8, and
Tawn copulas, extends the existing Gumbel and Clayton families with
rotations, and allows to set up a vine copula model using the 'copula' API.
Corresponding objects from the 'VineCopula' API can easily be converted.
Author: Thomas Nagler [aut, cre],
Benedikt Graeler [ctb]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between VC2copula versions 0.1.3 dated 2024-01-16 and 0.1.4 dated 2024-02-12
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat/test-bivariate-models.R | 14 +++++++------- 3 files changed, 12 insertions(+), 12 deletions(-)
Title: Utilities for Start-Up Messages
Description: Provides utilities to create or suppress start-up messages.
Author: Peter Ruckdeschel [cre, cph, aut]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between startupmsg versions 0.9.6 dated 2019-03-11 and 0.9.6.1 dated 2024-02-12
DESCRIPTION | 21 ++++++++++----------- MD5 | 2 +- 2 files changed, 11 insertions(+), 12 deletions(-)
Title: Selected ISO Codes
Description: ISO language, territory, currency, script and character codes.
Provides ISO 639 language codes, ISO 3166 territory codes, ISO 4217
currency codes, ISO 15924 script codes, and the ISO 8859 character codes
as well as the UN M.49 area codes.
Author: Christian Buchta [aut],
Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between ISOcodes versions 2023.12.07 dated 2023-12-07 and 2024.02.12 dated 2024-02-12
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- data/ISO_3166_2.rda |binary data/ISO_639_3.rda |binary data/ISO_639_3_Retirements.rda |binary data/UN_M.49_Regions.rda |binary 6 files changed, 8 insertions(+), 8 deletions(-)
Title: Business Days Calculations and Utilities
Description: Business days calculations based on a list of holidays and
nonworking weekdays. Quite useful for fixed income and derivatives pricing.
Author: Wilson Freitas <wilson.freitas@gmail.com>
Maintainer: Wilson Freitas <wilson.freitas@gmail.com>
Diff between bizdays versions 1.0.15 dated 2024-01-14 and 1.0.16 dated 2024-02-12
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 4 ++++ R/bizdays.R | 3 ++- R/calendar.R | 2 +- build/vignette.rds |binary inst/doc/Creating_Calendars.R | 6 +++--- inst/doc/Creating_Calendars.html | 6 +++--- inst/doc/Financial_and_non_financial.html | 6 +++--- inst/doc/bizdays.html | 6 +++--- man/bizdays-package.Rd | 7 +++++++ tests/testthat/test-bizdays.R | 28 +++++++++++++++++++++++++--- 12 files changed, 66 insertions(+), 32 deletions(-)
Title: Metabolomics Data Analysis Toolbox
Description: Functions for metabolomics data analysis: data preprocessing,
orthogonal signal correction, PCA analysis, PCA-DA analysis,
PLS-DA analysis, classification, feature selection, correlation
analysis, data visualisation and re-sampling strategies.
Author: Wanchang Lin
Maintainer: Wanchang Lin <wanchanglin@hotmail.com>
Diff between mt versions 2.0-1.19 dated 2022-02-01 and 2.0-1.20 dated 2024-02-12
DESCRIPTION | 8 ++--- MD5 | 40 ++++++++++++------------- NAMESPACE | 4 +- NEWS.md | 12 ++++++- R/mt_accest.R | 4 +- R/mt_fs.R | 16 +++++----- R/mt_maccest.R | 8 ++--- R/mt_osc.R | 2 - R/mt_pcalda.R | 6 +-- R/mt_plsc.R | 6 +-- R/mt_plslda.R | 4 +- R/mt_util.R | 30 +++++++++---------- man/dat.sel.Rd | 4 +- man/data.visualisation.Rd | 72 ++++++++++++++++++++++++---------------------- man/grpplot.Rd | 4 +- man/mdsplot.Rd | 4 +- man/panel.elli.Rd | 4 +- man/pca.outlier.Rd | 4 +- man/pcaplot.Rd | 2 - man/plot.pcalda.Rd | 2 - man/plot.plsc.Rd | 2 - 21 files changed, 125 insertions(+), 113 deletions(-)
Title: Post-Processing MCMC Outputs of Bayesian Factor Analytic Models
Description: A well known identifiability issue in factor analytic models is the invariance with respect to orthogonal transformations. This problem burdens the inference under a Bayesian setup, where Markov chain Monte Carlo (MCMC) methods are used to generate samples from the posterior distribution. The package applies a series of rotation, sign and permutation transformations (Papastamoulis and Ntzoufras (2022) <DOI:10.1007/s11222-022-10084-4>) into raw MCMC samples of factor loadings, which are provided by the user. The post-processed output is identifiable and can be used for MCMC inference on any parametric function of factor loadings. Comparison of multiple MCMC chains is also possible.
Author: Panagiotis Papastamoulis [aut, cre]
Maintainer: Panagiotis Papastamoulis <papapast@yahoo.gr>
Diff between factor.switching versions 1.3 dated 2022-03-16 and 1.4 dated 2024-02-12
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- build/partial.rdb |binary inst/CITATION | 17 ++++++++--------- man/procrustes_switching.Rd | 4 +--- man/rsp_exact.Rd | 3 --- man/rsp_full_sa.Rd | 4 +--- man/rsp_partial_sa.Rd | 3 --- man/weighted_procrustes_switching.Rd | 3 --- 9 files changed, 22 insertions(+), 36 deletions(-)
More information about factor.switching at CRAN
Permanent link
Title: Workflow for Cluster Randomised Trials with Spillover
Description: Design, workflow and statistical analysis of Cluster Randomised Trials of (health) interventions where there may be spillover between the arms (see <https://thomasasmith.github.io/index.html>).
Author: Thomas Smith [aut, cre, cph] ,
Lea Multerer [ctb],
Mariah Silkey [ctb]
Maintainer: Thomas Smith <Thomas-a.Smith@unibas.ch>
Diff between CRTspat versions 1.1.0 dated 2023-11-30 and 1.2.0 dated 2024-02-12
DESCRIPTION | 10 MD5 | 90 ++-- NEWS.md | 5 R/CRTsp.R | 2 R/analyseCRT.R | 152 +++--- R/designCRT.R | 4 R/plotCRT.R | 61 +- R/simulateCRT.R | 206 ++++----- R/utils.R | 978 ++++++++++++++++++++++---------------------- README.md | 4 build/vignette.rds |binary inst/doc/Usecase1.Rmd | 2 inst/doc/Usecase1.html | 2 inst/doc/Usecase2.Rmd | 52 +- inst/doc/Usecase2.html | 66 +- inst/doc/Usecase4.Rmd | 4 inst/doc/Usecase4.html | 4 inst/doc/Usecase5.Rmd | 76 +-- inst/doc/Usecase5.html | 109 ++-- inst/doc/Usecase6.Rmd | 22 inst/doc/Usecase6.html | 37 - inst/doc/Usecase7.Rmd | 32 - inst/doc/Usecase7.html | 45 -- inst/doc/Usecase8.Rmd | 20 inst/doc/Usecase8.html | 57 +- man/CRTanalysis.Rd | 16 man/CRTpower.Rd | 4 man/CRTspat-package.Rd | 42 - man/CRTwrite.Rd | 2 man/figures/manual.pdf |binary man/plotCRT.Rd | 260 +++++------ man/simulateCRT.Rd | 292 ++++++------- tests/testthat/test9.R | 4 vignettes/Usecase1.Rmd | 2 vignettes/Usecase2.Rmd | 52 +- vignettes/Usecase2.Rmd.orig | 10 vignettes/Usecase4.Rmd | 4 vignettes/Usecase4.Rmd.orig | 4 vignettes/Usecase5.Rmd | 76 +-- vignettes/Usecase5.Rmd.orig | 34 - vignettes/Usecase6.Rmd | 22 vignettes/Usecase6.Rmd.orig | 14 vignettes/Usecase7.Rmd | 32 - vignettes/Usecase7.Rmd.orig | 32 - vignettes/Usecase8.Rmd | 20 vignettes/Usecase8.Rmd.orig | 20 46 files changed, 1497 insertions(+), 1485 deletions(-)
Title: Detection of Outliers in Time Series
Description: Detection of outliers in time series following the
Chen and Liu (1993) <DOI:10.2307/2290724> procedure.
Innovational outliers, additive outliers, level shifts,
temporary changes and seasonal level shifts are considered.
Author: Javier Lopez-de-Lacalle <javlacalle@yahoo.es>
Maintainer: Javier Lopez-de-Lacalle <javlacalle@yahoo.es>
Diff between tsoutliers versions 0.6-8 dated 2019-02-24 and 0.6-10 dated 2024-02-12
DESCRIPTION | 9 +++++---- MD5 | 28 ++++++++++++++-------------- NEWS | 10 ++++++++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/tsoutliers-intro.R | 1 - inst/doc/tsoutliers-intro.pdf |binary man/coefs2poly.Rd | 2 +- man/ipi.Rd | 4 ++-- man/jarque-bera-test.Rd | 2 +- man/locate-outliers-loops.Rd | 2 +- man/locate-outliers.Rd | 2 +- man/outliers-tstatistics.Rd | 2 +- man/tso.Rd | 2 +- man/tsoutliers-package.Rd | 8 ++++---- 15 files changed, 41 insertions(+), 31 deletions(-)
Title: Methods for Graphical Models and Causal Inference
Description: Functions for causal structure
learning and causal inference using graphical models. The main algorithms
for causal structure learning are PC (for observational data without hidden
variables), FCI and RFCI (for observational data with hidden variables),
and GIES (for a mix of data from observational studies
(i.e. observational data) and data from experiments
involving interventions (i.e. interventional data) without hidden
variables). For causal inference the IDA algorithm, the Generalized
Backdoor Criterion (GBC), the Generalized Adjustment Criterion (GAC)
and some related functions are implemented. Functions for incorporating
background knowledge are provided.
Author: Markus Kalisch [aut, cre],
Alain Hauser [aut],
Martin Maechler [aut],
Diego Colombo [ctb],
Doris Entner [ctb],
Patrik Hoyer [ctb],
Antti Hyttinen [ctb],
Jonas Peters [ctb],
Nicoletta Andri [ctb],
Emilija Perkovic [ctb],
Preetam Nandy [ctb],
Philipp R [...truncated...]
Maintainer: Markus Kalisch <kalisch@stat.math.ethz.ch>
Diff between pcalg versions 2.7-10 dated 2024-02-06 and 2.7-11 dated 2024-02-12
DESCRIPTION | 8 +- MD5 | 10 ++- inst/doc/vignette2018.pdf |binary tests/Rplots.pdf |only tests/nohup.out |only tests/test_randDAG.R | 11 +-- tests/test_randDAG.Rout.save | 121 +++++++++++++++++++++---------------------- 7 files changed, 75 insertions(+), 75 deletions(-)
Title: Tools for Building OLS Regression Models
Description: Tools designed to make it easier for users, particularly beginner/intermediate R users
to build ordinary least squares regression models. Includes comprehensive regression output,
heteroskedasticity tests, collinearity diagnostics, residual diagnostics, measures of influence,
model fit assessment and variable selection procedures.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between olsrr versions 0.5.3 dated 2020-02-10 and 0.6.0 dated 2024-02-12
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| 324 - olsrr-0.6.0/olsrr/R/ols-stepwise-forward-regression.R | 430 +- olsrr-0.6.0/olsrr/R/ols-stepwise-hierarchical.R |only olsrr-0.6.0/olsrr/R/ols-stepwise-regression.R | 412 -- olsrr-0.6.0/olsrr/R/ols-stepwise-utils.R |only olsrr-0.6.0/olsrr/R/ols-studentized-residual-plot.R | 64 olsrr-0.6.0/olsrr/R/olsrr.R | 14 olsrr-0.6.0/olsrr/R/output.R | 384 - olsrr-0.6.0/olsrr/R/utils.R | 59 olsrr-0.6.0/olsrr/README.md | 208 - olsrr-0.6.0/olsrr/build/vignette.rds |binary olsrr-0.6.0/olsrr/inst/doc/heteroskedasticity.R | 30 olsrr-0.6.0/olsrr/inst/doc/heteroskedasticity.html | 265 - olsrr-0.6.0/olsrr/inst/doc/influence_measures.R | 22 olsrr-0.6.0/olsrr/inst/doc/influence_measures.Rmd | 8 olsrr-0.6.0/olsrr/inst/doc/influence_measures.html | 296 - olsrr-0.6.0/olsrr/inst/doc/intro.R | 22 olsrr-0.6.0/olsrr/inst/doc/intro.html | 433 +- olsrr-0.6.0/olsrr/inst/doc/reference-media.html | 38 olsrr-0.6.0/olsrr/inst/doc/regression_diagnostics.R | 24 olsrr-0.6.0/olsrr/inst/doc/regression_diagnostics.html | 416 +- olsrr-0.6.0/olsrr/inst/doc/residual_diagnostics.R | 12 olsrr-0.6.0/olsrr/inst/doc/residual_diagnostics.html | 218 - olsrr-0.6.0/olsrr/inst/doc/variable_selection.R | 117 olsrr-0.6.0/olsrr/inst/doc/variable_selection.Rmd | 238 - olsrr-0.6.0/olsrr/inst/doc/variable_selection.html | 2050 +++------- olsrr-0.6.0/olsrr/man/auto.Rd | 6 olsrr-0.6.0/olsrr/man/cement.Rd | 6 olsrr-0.6.0/olsrr/man/fitness.Rd | 6 olsrr-0.6.0/olsrr/man/hsb.Rd | 6 olsrr-0.6.0/olsrr/man/ols_aic.Rd | 23 olsrr-0.6.0/olsrr/man/ols_apc.Rd | 14 olsrr-0.6.0/olsrr/man/ols_coll_diag.Rd | 12 olsrr-0.6.0/olsrr/man/ols_fpe.Rd | 12 olsrr-0.6.0/olsrr/man/ols_hadi.Rd | 6 olsrr-0.6.0/olsrr/man/ols_hsp.Rd | 12 olsrr-0.6.0/olsrr/man/ols_leverage.Rd | 6 olsrr-0.6.0/olsrr/man/ols_mallows_cp.Rd | 12 olsrr-0.6.0/olsrr/man/ols_msep.Rd | 12 olsrr-0.6.0/olsrr/man/ols_plot_added_variable.Rd | 14 olsrr-0.6.0/olsrr/man/ols_plot_comp_plus_resid.Rd | 8 olsrr-0.6.0/olsrr/man/ols_plot_cooksd_bar.Rd | 42 olsrr-0.6.0/olsrr/man/ols_plot_cooksd_chart.Rd | 38 olsrr-0.6.0/olsrr/man/ols_plot_dfbetas.Rd | 8 olsrr-0.6.0/olsrr/man/ols_plot_dffits.Rd | 28 olsrr-0.6.0/olsrr/man/ols_plot_diagnostics.Rd | 6 olsrr-0.6.0/olsrr/man/ols_plot_hadi.Rd | 8 olsrr-0.6.0/olsrr/man/ols_plot_obs_fit.Rd | 6 olsrr-0.6.0/olsrr/man/ols_plot_reg_line.Rd | 6 olsrr-0.6.0/olsrr/man/ols_plot_resid_box.Rd | 17 olsrr-0.6.0/olsrr/man/ols_plot_resid_fit.Rd | 23 olsrr-0.6.0/olsrr/man/ols_plot_resid_fit_spread.Rd | 10 olsrr-0.6.0/olsrr/man/ols_plot_resid_hist.Rd | 17 olsrr-0.6.0/olsrr/man/ols_plot_resid_lev.Rd | 13 olsrr-0.6.0/olsrr/man/ols_plot_resid_pot.Rd | 8 olsrr-0.6.0/olsrr/man/ols_plot_resid_qq.Rd | 17 olsrr-0.6.0/olsrr/man/ols_plot_resid_regressor.Rd | 8 olsrr-0.6.0/olsrr/man/ols_plot_resid_stand.Rd | 13 olsrr-0.6.0/olsrr/man/ols_plot_resid_stud.Rd | 13 olsrr-0.6.0/olsrr/man/ols_plot_resid_stud_fit.Rd | 15 olsrr-0.6.0/olsrr/man/ols_plot_response.Rd | 6 olsrr-0.6.0/olsrr/man/ols_pred_rsq.Rd | 6 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olsrr-0.6.0/olsrr/tests/testthat/test-stepaic-both.R |only olsrr-0.6.0/olsrr/tests/testthat/test-stepaic-f-output.R | 162 olsrr-0.6.0/olsrr/tests/testthat/test-stepaic-f.R | 156 olsrr-0.6.0/olsrr/tests/testthat/test-stepwise-output.R | 254 - olsrr-0.6.0/olsrr/tests/testthat/test-stepwise.R | 56 olsrr-0.6.0/olsrr/tests/testthat/test-utility.R | 52 olsrr-0.6.0/olsrr/tests/testthat/test-visual.R | 239 - olsrr-0.6.0/olsrr/vignettes/influence_measures.Rmd | 8 olsrr-0.6.0/olsrr/vignettes/variable_selection.Rmd | 238 - 223 files changed, 6640 insertions(+), 8270 deletions(-)
Title: Robust Geostatistical Analysis of Spatial Data
Description: Provides functions for efficiently fitting linear models with spatially correlated errors by robust (Kuensch et al. (2011) <doi:10.3929/ethz-a-009900710>) and Gaussian (Harville (1977) <doi:10.1080/01621459.1977.10480998>) (Restricted) Maximum Likelihood and for computing robust and customary point and block external-drift Kriging predictions (Cressie (1993) <doi:10.1002/9781119115151>), along with utility functions for variogram modelling in ad hoc geostatistical analyses, model building, model evaluation by cross-validation, (conditional) simulation of Gaussian processes (Davies and Bryant (2013) <doi:10.18637/jss.v055.i09>), unbiased back-transformation of Kriging predictions of log-transformed data (Cressie (2006) <doi:10.1007/s11004-005-9022-8>).
Author: Andreas Papritz [aut, cre]
Maintainer: Andreas Papritz <papritz@retired.ethz.ch>
Diff between georob versions 0.3-17 dated 2024-02-03 and 0.3-18 dated 2024-02-12
georob-0.3-17/georob/vignettes/natbib.bst |only georob-0.3-18/georob/ChangeLog | 11 georob-0.3-18/georob/DESCRIPTION | 8 georob-0.3-18/georob/MD5 | 71 georob-0.3-18/georob/R/georob_predict.R | 8 georob-0.3-18/georob/R/georob_private_functions.R | 2 georob-0.3-18/georob/R/georob_variogram.R | 3 georob-0.3-18/georob/inst/NEWS.Rd | 37 georob-0.3-18/georob/inst/doc/georob_vignette.R | 118 - georob-0.3-18/georob/inst/doc/georob_vignette.Rnw | 1592 +++++++------- georob-0.3-18/georob/inst/doc/georob_vignette.pdf |binary georob-0.3-18/georob/man/compress.Rd | 27 georob-0.3-18/georob/man/control.georob.Rd | 102 georob-0.3-18/georob/man/cv.georob.Rd | 35 georob-0.3-18/georob/man/elevation.Rd | 2 georob-0.3-18/georob/man/fit.variogram.model.Rd | 92 georob-0.3-18/georob/man/gencorr.Rd | 2 georob-0.3-18/georob/man/georob.Rd | 46 georob-0.3-18/georob/man/georobModelBuilding.Rd | 24 georob-0.3-18/georob/man/georobObject.Rd | 6 georob-0.3-18/georob/man/georobPackage.Rd | 10 georob-0.3-18/georob/man/georobS3methods.Rd | 60 georob-0.3-18/georob/man/georobSimulation.Rd | 31 georob-0.3-18/georob/man/lgnpp.Rd | 51 georob-0.3-18/georob/man/param.defaults.Rd | 2 georob-0.3-18/georob/man/param.names.Rd | 2 georob-0.3-18/georob/man/plot.georob.Rd | 15 georob-0.3-18/georob/man/pmm.Rd | 44 georob-0.3-18/georob/man/predict.georob.Rd | 40 georob-0.3-18/georob/man/profilelogLik.Rd | 19 georob-0.3-18/georob/man/sample.variogram.Rd | 49 georob-0.3-18/georob/man/validate.predictions.Rd | 58 georob-0.3-18/georob/man/wolfcamp.Rd | 2 georob-0.3-18/georob/vignettes/georob.bib | 161 - georob-0.3-18/georob/vignettes/georob_vignette.Rnw | 1592 +++++++------- georob-0.3-18/georob/vignettes/r_coalash_objects.RData |binary georob-0.3-18/georob/vignettes/r_meuse_zinc_objects.RData |binary 37 files changed, 2241 insertions(+), 2081 deletions(-)
Title: Understand and Describe Bayesian Models and Posterior
Distributions
Description: Provides utilities to describe posterior
distributions and Bayesian models. It includes point-estimates such as
Maximum A Posteriori (MAP), measures of dispersion (Highest Density
Interval - HDI; Kruschke, 2015 <doi:10.1016/C2012-0-00477-2>) and
indices used for null-hypothesis testing (such as ROPE percentage, pd
and Bayes factors). References: Makowski et al. (2021) <doi:10.21105/joss.01541>.
Author: Dominique Makowski [aut, cre] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Michael D. Wilson [aut] ,
Brenton M. Wiernik [aut] ,
Paul-Christian Buerkner [rev],
Tristan Mahr [rev] ,
Henrik Singmann [ctb] ,
Quentin F. Gr [...truncated...]
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between bayestestR versions 0.13.1 dated 2023-04-07 and 0.13.2 dated 2024-02-12
DESCRIPTION | 17 - MD5 | 282 ++++++++++++----------- NAMESPACE | 7 NEWS.md | 27 ++ R/area_under_curve.R | 2 R/bayesfactor.R | 51 +--- R/bayesfactor_inclusion.R | 9 R/bayesfactor_models.R | 164 +++++-------- R/bayesfactor_parameters.R | 178 +++++++-------- R/bayesfactor_restricted.R | 41 +-- R/bci.R | 27 +- R/bic_to_bf.R | 3 R/check_prior.R | 12 - R/ci.R | 60 ++--- R/contr.equalprior.R | 1 R/convert_bayesian_to_frequentist.R | 66 ++--- R/convert_pd_to_p.R | 39 +++ R/describe_posterior.R | 306 ++++++++++++++------------ R/describe_prior.R | 2 R/diagnostic_draws.R | 14 - R/diagnostic_posterior.R | 104 ++++---- R/effective_sample.R | 8 R/equivalence_test.R | 38 +-- R/estimate_density.R | 269 ++++++++++++++++------ R/eti.R | 32 +- R/format.R | 12 - R/hdi.R | 111 +++++---- R/map_estimate.R | 81 ++++-- R/mcse.R | 77 +++--- R/mediation.R | 57 ++-- R/model_to_priors.R | 2 R/overlap.R | 2 R/p_direction.R | 286 ++++++++++++++---------- R/p_map.R | 116 ++++++--- R/p_rope.R | 84 +++++-- R/p_significance.R | 81 ++++-- R/p_to_bf.R | 56 ++-- R/plot.R | 9 R/point_estimate.R | 137 +++++++---- R/print.R | 1 R/print.bayesfactor_models.R | 6 R/print.equivalence_test.R | 117 ++------- R/print_html.R | 7 R/print_md.R | 7 R/reexports.R |only R/reshape_iterations.R | 6 R/rope.R | 274 +++++++++++++---------- R/rope_range.R | 185 +++++++-------- R/sensitivity_to_prior.R | 29 +- R/sexit.R | 14 - R/sexit_thresholds.R | 10 R/si.R | 79 ++++-- R/simulate_data.R | 26 -- R/simulate_priors.R | 12 - R/simulate_simpson.R | 8 R/spi.R | 172 ++++++-------- R/unupdate.R | 58 ++-- R/utils.R | 14 + R/utils_bayesfactor.R | 54 +--- R/utils_check_collinearity.R | 22 + R/utils_hdi_ci.R | 6 R/utils_print_data_frame.R | 6 R/weighted_posteriors.R | 47 ++- README.md | 14 - build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 1 man/bayesfactor.Rd | 37 +-- man/bayesfactor_inclusion.Rd | 10 man/bayesfactor_models.Rd | 108 ++++----- man/bayesfactor_parameters.Rd | 98 ++++---- man/bayesfactor_restricted.Rd | 46 ++- man/bayestestR-package.Rd | 1 man/bci.Rd | 33 +- man/bic_to_bf.Rd | 3 man/check_prior.Rd | 2 man/ci.Rd | 22 + man/convert_bayesian_as_frequentist.Rd | 50 +--- man/cwi.Rd | 3 man/density_at.Rd | 3 man/describe_posterior.Rd | 34 +- man/describe_prior.Rd | 2 man/diagnostic_draws.Rd | 10 man/diagnostic_posterior.Rd | 80 +++--- man/effective_sample.Rd | 8 man/equivalence_test.Rd | 28 +- man/estimate_density.Rd | 38 ++- man/eti.Rd | 50 ++-- man/figures/unnamed-chunk-10-1.png |binary man/figures/unnamed-chunk-12-1.png |binary man/figures/unnamed-chunk-14-1.png |binary man/figures/unnamed-chunk-16-1.png |binary man/figures/unnamed-chunk-7-1.png |binary man/figures/unnamed-chunk-8-1.png |binary man/hdi.Rd | 74 +++--- man/map_estimate.Rd | 48 +++- man/mcse.Rd | 9 man/mediation.Rd | 29 +- man/model_to_priors.Rd | 2 man/overlap.Rd | 3 man/p_direction.Rd | 159 +++++++++---- man/p_map.Rd | 70 ++++- man/p_rope.Rd | 22 + man/p_significance.Rd | 37 ++- man/p_to_bf.Rd | 59 ++--- man/pd_to_p.Rd | 27 ++ man/point_estimate.Rd | 54 +++- man/reexports.Rd | 2 man/rope.Rd | 113 ++++++--- man/rope_range.Rd | 99 +++----- man/sensitivity_to_prior.Rd | 30 +- man/sexit.Rd | 9 man/sexit_thresholds.Rd | 13 - man/si.Rd | 85 ++++--- man/simulate_prior.Rd | 6 man/simulate_simpson.Rd | 6 man/spi.Rd | 22 + man/unupdate.Rd | 6 man/weighted_posteriors.Rd | 43 +-- tests/testthat/_snaps |only tests/testthat/test-BFBayesFactor.R | 97 ++++---- tests/testthat/test-bayesfactor_models.R | 10 tests/testthat/test-bayesfactor_parameters.R | 58 ++-- tests/testthat/test-bayesian_as_frequentist.R |only tests/testthat/test-blavaan.R | 83 +++---- tests/testthat/test-brms.R | 4 tests/testthat/test-check_prior.R | 37 +-- tests/testthat/test-ci.R | 26 +- tests/testthat/test-describe_posterior.R | 199 +++++++++------- tests/testthat/test-describe_prior.R | 1 tests/testthat/test-different_models.R | 99 +++++--- tests/testthat/test-format.R |only tests/testthat/test-hdi.R | 17 - tests/testthat/test-map_estimate.R | 22 + tests/testthat/test-overlap.R | 2 tests/testthat/test-p_direction.R | 20 + tests/testthat/test-p_map.R | 19 + tests/testthat/test-p_significance.R | 21 + tests/testthat/test-pd_to_p.R |only tests/testthat/test-print.R |only tests/testthat/test-rope.R | 78 +++--- tests/testthat/test-rope_range.R | 50 ++-- tests/testthat/test-rstanarm.R | 5 tests/testthat/test-si.R | 19 + tests/testthat/test-weighted_posteriors.R | 5 145 files changed, 3768 insertions(+), 2842 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-04 0.2.1
2020-02-02 0.1.1
2019-11-07 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-18 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-10 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-29 1.7.1
2017-02-16 1.7.0
2015-05-17 1.3
2015-05-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-15 0.2.2
2020-08-24 0.2.1
2018-12-06 0.2.0
2018-03-06 0.1.0
Title: Sparse Arrays and Multivariate Polynomials
Description: Sparse arrays interpreted as multivariate polynomials.
Uses 'disordR' discipline (Hankin, 2022,
<doi:10.48550/ARXIV.2210.03856>). To cite the package in
publications please use Hankin (2022) <doi:10.48550/ARXIV.2210.10848>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between spray versions 1.0-24 dated 2023-08-10 and 1.0-25 dated 2024-02-12
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NAMESPACE | 1 + R/spray.R | 18 ++++++++++++++++-- build/spray.pdf |binary build/stage23.rdb |binary build/vignette.rds |binary inst/doc/spray.Rnw | 6 +++--- inst/doc/spray.pdf |binary man/Extract.Rd | 17 ++++++++++++++++- src/spray_ops.cpp | 2 +- tests/testthat/test_aaa.R | 12 ++++++++++++ vignettes/spray.Rnw | 6 +++--- 13 files changed, 68 insertions(+), 26 deletions(-)
Title: Translate Text
Description: The goal of the this package is to provide easy methods to
translate pieces of text. Functions send requests to translation services online.
Author: Tomer Iwan [aut, cre, cph]
Maintainer: Tomer Iwan <t.iwan@vu.nl>
Diff between polyglotr versions 1.3.1 dated 2024-01-09 and 1.4.0 dated 2024-02-12
DESCRIPTION | 12 MD5 | 112 ++- NAMESPACE | 39 - NEWS.md | 56 + R/batch_translate.R | 52 - R/create_translation_table.R | 62 +- R/create_transliteration_table.R |only R/google_get_supported_languages.R | 58 +- R/google_is_valid_language_code.R | 46 - R/google_supported_languages.R | 16 R/google_translate.R | 134 ++-- R/google_translate_file.R | 86 +- R/google_transliterate.R |only R/language_detect.R | 54 - R/linguee_external_sources.R | 84 +- R/linguee_translation_examples.R | 102 +-- R/linguee_word_translation.R | 92 +-- R/mymemory_translate.R | 64 +- R/pons_translate.R |only R/qcri_api_key.R |only R/qcri_get_domains.R |only R/qcri_get_language_pairs.R |only R/qcri_translate_text.R |only R/wikimedia_detect_language.R |only R/wikipedia_get_language_names.R |only R/wmcloud_translate.R |only README.md | 122 ++-- build/vignette.rds |binary inst/doc/Linguee.R | 48 - inst/doc/Linguee.Rmd | 124 ++-- inst/doc/Linguee.html | 836 ++++++++++++++-------------- inst/doc/Movie_Reviews.R | 58 +- inst/doc/Movie_Reviews.Rmd | 136 ++-- inst/doc/Movie_Reviews.html | 896 +++++++++++++++---------------- inst/doc/polyglotr.R | 50 - inst/doc/polyglotr.Rmd | 114 +-- inst/doc/polyglotr.html | 816 ++++++++++++++-------------- man/batch_translate.Rd | 52 - man/create_translation_table.Rd | 50 - man/create_transliteration_table.Rd |only man/google_get_supported_languages.Rd | 28 man/google_is_valid_language_code.Rd | 44 - man/google_supported_languages.Rd | 38 - man/google_translate.Rd | 62 +- man/google_transliterate.Rd |only man/language_detect.Rd | 34 - man/linguee_external_sources.Rd | 64 +- man/linguee_translation_examples.Rd | 86 +- man/linguee_word_translation.Rd | 76 +- man/mymemory_translate.Rd | 52 - man/pons_translate.Rd |only man/qcri_api_key.Rd |only man/qcri_get_domains.Rd |only man/qcri_get_language_pairs.Rd |only man/qcri_translate_text.Rd |only man/translate_file.Rd | 60 +- man/wikimedia_detect_language.Rd |only man/wikipedia_get_language_names.Rd |only man/wmcloud_translate.Rd |only tests/testthat.R | 20 tests/testthat/helpers.R | 30 - tests/testthat/test-google_translate.R | 114 +-- tests/testthat/test-language_detect.R | 14 tests/testthat/test-mymemory_translate.R | 20 vignettes/Linguee.Rmd | 124 ++-- vignettes/Movie_Reviews.Rmd | 136 ++-- vignettes/polyglotr.Rmd | 114 +-- 67 files changed, 2764 insertions(+), 2723 deletions(-)
Title: Physical Activity with Accelerometers
Description: Functions to process, format and store ActiGraph GT1M and GT3X accelerometer data.
Author: Marco Geraci
Maintainer: Marco Geraci <marco.geraci@uniroma1.it>
Diff between pawacc versions 1.2.2 dated 2017-02-20 and 1.2.3 dated 2024-02-12
DESCRIPTION | 13 ++++----- MD5 | 34 ++++++++++++------------ NAMESPACE | 6 +--- R/pawacc.R | 65 +++++++++++++++++++++++++++++------------------ inst/CITATION | 36 +++++++++++++------------- man/aggAccFile.Rd | 2 - man/collapse.accfile.Rd | 2 - man/dateSummary.Rd | 2 - man/errorCts.Rd | 2 - man/fun.collapse.Rd | 2 - man/gt1mAccDir.Rd | 2 - man/gt1mAccFile.Rd | 2 - man/gt3xAccFile.Rd | 2 - man/markbouts.acclist.Rd | 2 - man/markwear.acclist.Rd | 2 - man/pawacc-package.Rd | 8 ++--- man/plot.gt1m.Rd | 2 - man/readAccDir.Rd | 2 - 18 files changed, 100 insertions(+), 86 deletions(-)
Title: Overfitting Bayesian Mixtures of Factor Analyzers with
Parsimonious Covariance and Unknown Number of Components
Description: Model-based clustering of multivariate continuous data using Bayesian mixtures of factor analyzers (Papastamoulis (2019) <DOI:10.1007/s11222-019-09891-z> (2018) <DOI:10.1016/j.csda.2018.03.007>). The number of clusters is estimated using overfitting mixture models (Rousseau and Mengersen (2011) <DOI:10.1111/j.1467-9868.2011.00781.x>): suitable prior assumptions ensure that asymptotically the extra components will have zero posterior weight, therefore, the inference is based on the ``alive'' components. A Gibbs sampler is implemented in order to (approximately) sample from the posterior distribution of the overfitting mixture. A prior parallel tempering scheme is also available, which allows to run multiple parallel chains with different prior distributions on the mixture weights. These chains run in parallel and can swap states using a Metropolis-Hastings move. Eight different parameterizations give rise to parsimonious representations of the covariance per cluster (f [...truncated...]
Author: Panagiotis Papastamoulis [aut, cre]
Maintainer: Panagiotis Papastamoulis <papapast@yahoo.gr>
Diff between fabMix versions 5.0 dated 2020-02-19 and 5.1 dated 2024-02-12
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- build/partial.rdb |binary inst/CITATION | 29 ++++++----------------------- man/complete.log.likelihood_Sj.Rd | 2 +- man/getStuffForDIC.Rd | 5 +---- src/Makevars | 2 +- src/Makevars.win | 2 +- 8 files changed, 22 insertions(+), 42 deletions(-)
Title: Modelling Heterogeneity in Paired Comparison Data
Description: Performs 'BTLLasso' as described by Schauberger and Tutz (2019) <doi:10.18637/jss.v088.i09> and Schauberger and Tutz (2017) <doi:10.1177/1471082X17693086>. BTLLasso is a method to include different types of variables in paired comparison models and, therefore, to allow for heterogeneity between subjects. Variables can be subject-specific, object-specific and subject-object-specific and can have an influence on the attractiveness/strength of the objects. Suitable L1 penalty terms are used to cluster certain effects and to reduce the complexity of the models.
Author: Gunther Schauberger
Maintainer: Gunther Schauberger <gunther.schauberger@tum.de>
Diff between BTLLasso versions 0.1-12 dated 2024-01-23 and 0.1-13 dated 2024-02-12
DESCRIPTION | 12 ++++++------ MD5 | 9 +++++---- NAMESPACE | 1 - R/plot.BTLLasso.R | 4 ++-- R/spread.labs.R |only build/partial.rdb |binary 6 files changed, 13 insertions(+), 13 deletions(-)
Title: Conditional Graphical LASSO for Gaussian Graphical Models with
Censored and Missing Values
Description: Conditional graphical lasso estimator is an extension of the graphical lasso proposed to estimate the conditional dependence structure of a set of p response variables given q predictors. This package provides suitable extensions developed to study datasets with censored and/or missing values. Standard conditional graphical lasso is available as a special case. Furthermore, the package provides an integrated set of core routines for visualization, analysis, and simulation of datasets with censored and/or missing values drawn from a Gaussian graphical model. Details about the implemented models can be found in Augugliaro et al. (2023) <doi: 10.18637/jss.v105.i01>, Augugliaro et al. (2020b) <doi: 10.1007/s11222-020-09945-7>, Augugliaro et al. (2020a) <doi: 10.1093/biostatistics/kxy043>, Yin et al. (2001) <doi: 10.1214/11-AOAS494> and Stadler et al. (2012) <doi: 10.1007/s11222-010-9219-7>.
Author: Luigi Augugliaro [aut, cre] ,
Gianluca Sottile [aut] ,
Ernst C. Wit [aut] ,
Veronica Vinciotti [aut]
Maintainer: Luigi Augugliaro <luigi.augugliaro@unipa.it>
Diff between cglasso versions 2.0.6 dated 2023-01-17 and 2.0.7 dated 2024-02-12
ChangeLog | 7 +++++++ DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 6 +++--- R/GoF.R | 2 +- R/ShowStructure.R | 6 +++--- R/cggm.R | 2 +- R/to_graph.R | 2 +- build/partial.rdb |binary man/AIC.cglasso.Rd | 2 +- man/BIC.cglasso.Rd | 2 +- man/QFun.Rd | 2 +- man/cglasso.Rd | 2 +- man/plot.GoF.Rd | 2 +- man/select.cglasso.Rd | 38 +++++++++++++++++++------------------- 15 files changed, 59 insertions(+), 52 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-26 2.0.3
2023-06-17 2.0.2
2022-09-13 2.0.1
2021-11-10 2.0.0
2021-01-27 1.0.1
2021-01-25 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-21 2.1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-07 3.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-12 0.1-1
2017-03-04 0.1-0