Sun, 25 Feb 2024

Package ggside updated to version 0.3.0 with previous version 0.2.3 dated 2023-12-10

Title: Side Grammar Graphics
Description: The grammar of graphics as shown in 'ggplot2' has provided an expressive API for users to build plots. 'ggside' extends 'ggplot2' by allowing users to add graphical information about one of the main panel's axis using a familiar 'ggplot2' style API with tidy data. This package is particularly useful for visualizing metadata on a discrete axis, or summary graphics on a continuous axis such as a boxplot or a density distribution.
Author: Justin Landis [aut, cre]
Maintainer: Justin Landis <jtlandis314@gmail.com>

Diff between ggside versions 0.2.3 dated 2023-12-10 and 0.3.0 dated 2024-02-25

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More information about ggside at CRAN
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Package gdalraster updated to version 1.9.0 with previous version 1.8.0 dated 2024-01-27

Title: Bindings to the 'Geospatial Data Abstraction Library' Raster API
Description: Interface to the Raster API of the 'Geospatial Data Abstraction Library' ('GDAL', <https://gdal.org>). Bindings are implemented in an exposed C++ class encapsulating a 'GDALDataset' and its raster band objects, along with several stand-alone functions. These support manual creation of uninitialized datasets, creation from existing raster as template, read/set dataset parameters, low level I/O, color tables, raster attribute tables, virtual raster (VRT), and 'gdalwarp' wrapper for reprojection and mosaicing. Includes 'GDAL' algorithms ('dem_proc()', 'polygonize()', 'rasterize()', etc.), and functions for coordinate transformation and spatial reference systems. Calling signatures resemble the native C, C++ and Python APIs provided by the 'GDAL' project. Includes raster 'calc()' to evaluate a given R expression on a layer or stack of layers, with pixel x/y available as variables in the expression; and raster 'combine()' to identify and count unique pixel combinations across multiple [...truncated...]
Author: Chris Toney [aut, cre] , Frank Warmerdam [ctb, cph] , Even Rouault [ctb, cph] , Marius Appel [ctb, cph] , Daniel James [ctb, cph] , Peter Dimov [ctb, cph]
Maintainer: Chris Toney <chris.toney@usda.gov>

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Package boot updated to version 1.3-30 with previous version 1.3-29 dated 2024-02-19

Title: Bootstrap Functions (Originally by Angelo Canty for S)
Description: Functions and datasets for bootstrapping from the book "Bootstrap Methods and Their Application" by A. C. Davison and D. V. Hinkley (1997, CUP), originally written by Angelo Canty for S.
Author: Angelo Canty [aut] , Brian Ripley [aut, trl] , Alessandra R. Brazzale [ctb, cre]
Maintainer: Alessandra R. Brazzale <brazzale@stat.unipd.it>

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Package HiDimDA updated to version 0.2-6 with previous version 0.2-4 dated 2015-10-19

Title: High Dimensional Discriminant Analysis
Description: Performs linear discriminant analysis in high dimensional problems based on reliable covariance estimators for problems with (many) more variables than observations. Includes routines for classifier training, prediction, cross-validation and variable selection.
Author: Antonio Pedro Duarte Silva <psilva@ucp.pt>
Maintainer: Antonio Pedro Duarte Silva <psilva@ucp.pt>

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Package scdhlm updated to version 0.7.3 with previous version 0.7.2 dated 2023-03-12

Title: Estimating Hierarchical Linear Models for Single-Case Designs
Description: Provides a set of tools for estimating hierarchical linear models and effect sizes based on data from single-case designs. Functions are provided for calculating standardized mean difference effect sizes that are directly comparable to standardized mean differences estimated from between-subjects randomized experiments, as described in Hedges, Pustejovsky, and Shadish (2012) <DOI:10.1002/jrsm.1052>; Hedges, Pustejovsky, and Shadish (2013) <DOI:10.1002/jrsm.1086>; Pustejovsky, Hedges, and Shadish (2014) <DOI:10.3102/1076998614547577>; and Chen, Pustejovsky, Klingbeil, and Van Norman (2023) <DOI:10.1016/j.jsp.2023.02.002>. Includes an interactive web interface.
Author: James Pustejovsky [aut, cre], Man Chen [aut], Bethany Hamilton [aut]
Maintainer: James Pustejovsky <jepusto@gmail.com>

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Package RSEIS updated to version 4.2-0 with previous version 4.1-6 dated 2023-08-19

Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.
Author: Jonathan M. Lees [aut, cre], Jake Anderson [ctb], Leonard Lisapaly [ctb], Dave Harris [aut, cph]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>

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Package maketools updated to version 1.3.0 with previous version 1.2.5 dated 2023-07-12

Title: Exploring and Testing the Toolchain and System Libraries
Description: Helper functions that interface with the system utilities to learn about the local build environment. Lets you explore 'make' rules to test the local configuration, or query 'pkg-config' to find compiler flags and libs needed for building packages with external dependencies. Also contains tools to analyze which libraries that a installed R package linked to by inspecting output from 'ldd' in combination with information from your distribution package manager, e.g. 'rpm' or 'dpkg'.
Author: Jeroen Ooms [aut, cre, cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

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Package smoothHR updated to version 1.0.5 with previous version 1.0.4 dated 2022-09-04

Title: Smooth Hazard Ratio Curves Taking a Reference Value
Description: Provides flexible hazard ratio curves allowing non-linear relationships between continuous predictors and survival. To better understand the effects that each continuous covariate has on the outcome, results are expressed in terms of hazard ratio curves, taking a specific covariate value as reference. Confidence bands for these curves are also derived.
Author: Artur Araujo [aut, cre] , Luis Meira-Machado [aut]
Maintainer: Artur Araujo <artur.stat@gmail.com>

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Package bgms updated to version 0.1.3 with previous version 0.1.2 dated 2023-10-13

Title: Bayesian Analysis of Networks of Binary and/or Ordinal Variables
Description: Bayesian variable selection methods for analyzing the structure of a Markov Random Field model for a network of binary and/or ordinal variables. Details of the implemented methods can be found in: Marsman and Haslbeck (2023) <doi:10.31234/osf.io/ukwrf>.
Author: Maarten Marsman [aut, cre] , Karoline Huth [ctb] , Nikola Sekulovski [ctb] , Don van den Bergh [ctb]
Maintainer: Maarten Marsman <m.marsman@uva.nl>

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Package networkscaleup updated to version 0.1-2 with previous version 0.1-1 dated 2022-04-06

Title: Network Scale-Up Models for Aggregated Relational Data
Description: Provides a variety of Network Scale-up Models for researchers to analyze Aggregated Relational Data, mostly through the use of Stan. In this version, the package implements models from Laga, I., Bao, L., and Niu, X (2021) <arXiv:2109.10204>, Zheng, T., Salganik, M. J., and Gelman, A. (2006) <doi:10.1198/016214505000001168>, Killworth, P. D., Johnsen, E. C., McCarty, C., Shelley, G. A., and Bernard, H. R. (1998) <doi:10.1016/S0378-8733(96)00305-X>, and Killworth, P. D., McCarty, C., Bernard, H. R., Shelley, G. A., and Johnsen, E. C. (1998) <doi:10.1177/0193841X9802200205>.
Author: Ian Laga [aut, cre] , Le Bao [aut], Xiaoyue Niu [aut]
Maintainer: Ian Laga <ilaga25@gmail.com>

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Package N2H4 updated to version 0.8.4 with previous version 0.8.3 dated 2024-02-17

Title: Handling Methods for Naver News Text Crawling
Description: Provides some functions to get Korean text sample from news articles in Naver which is popular news portal service <https://news.naver.com/> in Korea.
Author: Chanyub Park [aut, cre]
Maintainer: Chanyub Park <mrchypark@gmail.com>

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Package lax updated to version 1.2.3 with previous version 1.2.2 dated 2023-12-02

Title: Loglikelihood Adjustment for Extreme Value Models
Description: Performs adjusted inferences based on model objects fitted, using maximum likelihood estimation, by the extreme value analysis packages 'eva' <https://cran.r-project.org/package=eva>, 'evd' <https://cran.r-project.org/package=evd>, 'evir' <https://cran.r-project.org/package=evir>, 'extRemes' <https://cran.r-project.org/package=extRemes>, 'fExtremes' <https://cran.r-project.org/package=fExtremes>, 'ismev' <https://cran.r-project.org/package=ismev>, 'mev' <https://cran.r-project.org/package=mev>, 'POT' <https://cran.r-project.org/package=POT> and 'texmex' <https://cran.r-project.org/package=texmex>. Adjusted standard errors and an adjusted loglikelihood are provided, using the 'chandwich' package <https://cran.r-project.org/package=chandwich> and the object-oriented features of the 'sandwich' package <https://cran.r-project.org/package=sandwich>. The adjustment is based on a robust sandwich estimator of the parameter covar [...truncated...]
Author: Paul J. Northrop [aut, cre, cph], Camellia Yin [aut, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>

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Package grafify updated to version 4.0.1 with previous version 4.0 dated 2023-10-07

Title: Easy Graphs for Data Visualisation and Linear Models for ANOVA
Description: Easily explore data by plotting graphs with a few lines of code. Use these ggplot() wrappers to quickly draw graphs of scatter/dots with box-whiskers, violins or SD error bars, data distributions, before-after graphs, factorial ANOVA and more. Customise graphs in many ways, for example, by choosing from colour blind-friendly palettes (12 discreet, 3 continuous and 2 divergent palettes). Use the simple code for ANOVA as ordinary (lm()) or mixed-effects linear models (lmer()), including randomised-block or repeated-measures designs, and fit non-linear outcomes as a generalised additive model (gam) using mgcv(). Obtain estimated marginal means and perform post-hoc comparisons on fitted models (via emmeans()). Also includes small datasets for practising code and teaching basics before users move on to more complex designs. See vignettes for details on usage <https://grafify-vignettes.netlify.app/>. Citation: <doi:10.5281/zenodo.5136508>.
Author: Avinash R Shenoy [cre, aut]
Maintainer: Avinash R Shenoy <a.shenoy@imperial.ac.uk>

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Package afex updated to version 1.3-1 with previous version 1.3-0 dated 2023-04-17

Title: Analysis of Factorial Experiments
Description: Convenience functions for analyzing factorial experiments using ANOVA or mixed models. aov_ez(), aov_car(), and aov_4() allow specification of between, within (i.e., repeated-measures), or mixed (i.e., split-plot) ANOVAs for data in long format (i.e., one observation per row), automatically aggregating multiple observations per individual and cell of the design. mixed() fits mixed models using lme4::lmer() and computes p-values for all fixed effects using either Kenward-Roger or Satterthwaite approximation for degrees of freedom (LMM only), parametric bootstrap (LMMs and GLMMs), or likelihood ratio tests (LMMs and GLMMs). afex_plot() provides a high-level interface for interaction or one-way plots using ggplot2, combining raw data and model estimates. afex uses type 3 sums of squares as default (imitating commercial statistical software).
Author: Henrik Singmann [aut, cre] , Ben Bolker [aut], Jake Westfall [aut], Frederik Aust [aut] , Mattan S. Ben-Shachar [aut], Soeren Hoejsgaard [ctb], John Fox [ctb], Michael A. Lawrence [ctb], Ulf Mertens [ctb], Jonathon Love [ctb], Russell Lenth [ctb], Rune [...truncated...]
Maintainer: Henrik Singmann <singmann@gmail.com>

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Package symengine updated to version 0.2.6 with previous version 0.2.4 dated 2023-12-11

Title: Interface to the 'SymEngine' Library
Description: Provides an R interface to 'SymEngine' <https://github.com/symengine/>, a standalone 'C++' library for fast symbolic manipulation. The package has functionalities for symbolic computation like calculating exact mathematical expressions, solving systems of linear equations and code generation.
Author: Jialin Ma [cre, aut], Isuru Fernando [aut], Xin Chen [aut]
Maintainer: Jialin Ma <marlin@inventati.org>

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Package pricesensitivitymeter updated to version 1.3.0 with previous version 1.2.2 dated 2021-10-19

Title: Van Westendorp Price Sensitivity Meter Analysis
Description: An implementation of the van Westendorp Price Sensitivity Meter in R, which is a survey-based approach to analyze consumer price preferences and sensitivity (van Westendorp 1976, isbn:9789283100386).
Author: Max Alletsee [aut, cre]
Maintainer: Max Alletsee <max.alletsee@gmail.com>

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Package ctrdata updated to version 1.17.2 with previous version 1.17.1 dated 2024-02-04

Title: Retrieve and Analyze Clinical Trials in Public Registers
Description: A system for querying, retrieving and analyzing protocol- and results-related information on clinical trials from four public registers, the 'European Union Clinical Trials Register' ('EUCTR', <https://www.clinicaltrialsregister.eu/>), 'ClinicalTrials.gov' ('CTGOV', using the classic interface at <https://classic.clinicaltrials.gov/>, and 'CTGOV2', using the current interface at <https://www.clinicaltrials.gov/>), the 'ISRCTN' (<http://www.isrctn.com/>) and the 'European Union Clinical Trials Information System' ('CTIS', <https://euclinicaltrials.eu/>). Trial information is downloaded, converted and stored in a database ('PostgreSQL', 'SQLite', 'DuckDB' or 'MongoDB'; via package 'nodbi'). Documents in registers associated with trials can also be downloaded. Other functions identify deduplicated records, easily find and extract variables (fields) of interest even from complex nested data as used by the registers, merge variables and update queries. The pack [...truncated...]
Author: Ralf Herold [aut, cre]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>

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Package Copula.surv updated to version 1.3 with previous version 1.2 dated 2022-03-05

Title: Analysis of Bivariate Survival Data Based on Copulas
Description: Simulating bivariate survival data from copula models. Estimation of the association parameter in copula models. Two different ways to estimate the association parameter in copula models are implemented. A goodness-of-fit test for a given copula model is implemented. See Emura, Lin and Wang (2010) <doi:10.1016/j.csda.2010.03.013> for details.
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>

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Package BRugs updated to version 0.9-2.1 with previous version 0.9-2 dated 2023-05-15

Title: Interface to the 'OpenBUGS' MCMC Software
Description: Fully-interactive R interface to the 'OpenBUGS' software for Bayesian analysis using MCMC sampling. Runs natively and stably in 32-bit R under Windows. Versions running on x86Linux and on 64-bit R under Windows are in "beta" status and less efficient.
Author: OpenBUGS was developed by Andrew Thomas, Dave Lunn, David Spiegelhalter and Nicky Best. R interface developed by Uwe Ligges, Sibylle Sturtz, Andrew Gelman, Gregor Gorjanc and Chris Jackson. Linux port and most recent developments by Chris Jackson.
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>

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Package pammtools updated to version 0.5.93 with previous version 0.5.92 dated 2023-07-12

Title: Piece-Wise Exponential Additive Mixed Modeling Tools for Survival Analysis
Description: The Piece-wise exponential (Additive Mixed) Model (PAMM; Bender and others (2018) <doi: 10.1177/1471082X17748083>) is a powerful model class for the analysis of survival (or time-to-event) data, based on Generalized Additive (Mixed) Models (GA(M)Ms). It offers intuitive specification and robust estimation of complex survival models with stratified baseline hazards, random effects, time-varying effects, time-dependent covariates and cumulative effects (Bender and others (2019)), as well as support for left-truncated, competing risks and recurrent events data. pammtools provides tidy workflow for survival analysis with PAMMs, including data simulation, transformation and other functions for data preprocessing and model post-processing as well as visualization.
Author: Andreas Bender [aut, cre] , Fabian Scheipl [aut] , Philipp Kopper [aut] , Lukas Burk [ctb]
Maintainer: Andreas Bender <andreas.bender@stat.uni-muenchen.de>

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Package rsbp (with last version 0.1.0) was removed from CRAN

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2020-09-15 0.1.0

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Package mixbox updated to version 1.2.3 with previous version 1.2.2 dated 2023-02-22

Title: Observed Fisher Information Matrix for Finite Mixture Model
Description: Developed for the following tasks. 1- simulating realizations from the canonical, restricted, and unrestricted finite mixture models. 2- Monte Carlo approximation for density function of the finite mixture models. 3- Monte Carlo approximation for the observed Fisher information matrix, asymptotic standard error, and the corresponding confidence intervals for parameters of the mixture models sing the method proposed by Basford et al. (1997) <https://espace.library.uq.edu.au/view/UQ:57525>.
Author: Mahdi Teimouri [aut, cre, cph, ctb]
Maintainer: Mahdi Teimouri <teimouri@aut.ac.ir>

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Package mobirep (with last version 0.2.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-04-22 0.2.3
2021-04-20 0.2.2

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Package grf updated to version 2.3.2 with previous version 2.3.1 dated 2023-09-30

Title: Generalized Random Forests
Description: Forest-based statistical estimation and inference. GRF provides non-parametric methods for heterogeneous treatment effects estimation (optionally using right-censored outcomes, multiple treatment arms or outcomes, or instrumental variables), as well as least-squares regression, quantile regression, and survival regression, all with support for missing covariates.
Author: Julie Tibshirani [aut], Susan Athey [aut], Rina Friedberg [ctb], Vitor Hadad [ctb], David Hirshberg [ctb], Luke Miner [ctb], Erik Sverdrup [aut, cre], Stefan Wager [aut], Marvin Wright [ctb]
Maintainer: Erik Sverdrup <erik.sverdrup@monash.edu>

Diff between grf versions 2.3.1 dated 2023-09-30 and 2.3.2 dated 2024-02-25

 DESCRIPTION                              |   16 +--
 MD5                                      |   48 ++++-----
 R/causal_forest.R                        |    2 
 R/causal_survival_forest.R               |    9 +
 R/dgps.R                                 |    4 
 R/instrumental_forest.R                  |    2 
 R/ll_regression_forest.R                 |    2 
 R/lm_forest.R                            |    2 
 R/multi_arm_causal_forest.R              |    2 
 R/plot.R                                 |    2 
 R/rank_average_treatment.R               |  150 ++++++++++++++++++++-----------
 R/regression_forest.R                    |    2 
 man/causal_survival_forest.Rd            |    7 +
 man/generate_causal_data.Rd              |    2 
 man/generate_causal_survival_data.Rd     |    2 
 man/grf-package.Rd                       |    4 
 man/predict.causal_forest.Rd             |    2 
 man/predict.causal_survival_forest.Rd    |    2 
 man/predict.instrumental_forest.Rd       |    2 
 man/predict.ll_regression_forest.Rd      |    2 
 man/predict.lm_forest.Rd                 |    2 
 man/predict.multi_arm_causal_forest.Rd   |    2 
 man/predict.regression_forest.Rd         |    2 
 man/rank_average_treatment_effect.Rd     |   91 +++++++++++++-----
 man/rank_average_treatment_effect.fit.Rd |   52 ++++++----
 25 files changed, 258 insertions(+), 155 deletions(-)

More information about grf at CRAN
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