Title: Loading Fonts into R
Description: Loading system fonts and Google Fonts
<https://fonts.google.com/> into R, in order to
support other packages such as 'R2SWF' and 'showtext'.
Author: Yixuan Qiu and authors/contributors of the
included fonts. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between sysfonts versions 0.8.8 dated 2022-03-13 and 0.8.9 dated 2024-03-01
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- inst/NEWS.Rd | 14 ++++++++++++++ inst/fonts/webfonts.bz2 |binary src/Makevars.ucrt | 13 +++++++++++-- 5 files changed, 35 insertions(+), 11 deletions(-)
Title: Multiple Empirical Likelihood Tests
Description: Performs multiple empirical likelihood tests. It offers an
easy-to-use interface and flexibility in specifying hypotheses and
calibration methods, extending the framework to simultaneous
inferences. The core computational routines are implemented using the
'Eigen' 'C++' library and 'RcppEigen' interface, with 'OpenMP' for
parallel computation. Details of the testing procedures are provided
in Kim, MacEachern, and Peruggia (2023)
<doi:10.1080/10485252.2023.2206919>. A companion paper by Kim,
MacEachern, and Peruggia (2024) <doi:10.18637/jss.v108.i05> is
available for further information. This work was supported by the U.S.
National Science Foundation under Grants No. SES-1921523 and
DMS-2015552.
Author: Eunseop Kim [aut, cph, cre],
Steven MacEachern [ctb, ths],
Mario Peruggia [ctb, ths],
Pierre Chausse [rev],
Alex Stringer [rev]
Maintainer: Eunseop Kim <markean@pm.me>
Diff between melt versions 1.11.0 dated 2024-02-17 and 1.11.1 dated 2024-03-01
DESCRIPTION | 13 MD5 | 60 +-- NAMESPACE | 7 NEWS.md | 7 R/confint-methods.R | 4 R/confreg-methods.R | 4 R/el_control.R | 38 + R/el_mean.R | 28 - R/elmt-methods.R | 2 R/elt-methods.R | 9 R/melt-package.R | 7 R/validate.R | 715 +++++++++++-------------------------- build/vignette.rds |binary inst/WORDLIST | 115 ++++++ inst/doc/article.R |only inst/doc/article.Rnw |only inst/doc/article.pdf |only inst/doc/model.R | 6 inst/doc/model.Rmd | 6 inst/doc/performance.R | 9 inst/doc/performance.Rmd | 9 inst/doc/performance.html | 34 - inst/doc/usage.R | 9 inst/doc/usage.Rmd | 17 inst/doc/usage.html | 11 tests/testthat/test-confint.R | 4 tests/testthat/test-el_control.R | 2 tests/testthat/test-elmt.R | 6 vignettes/article.Rnw |only vignettes/model.Rmd | 6 vignettes/performance.Rmd | 9 vignettes/references.bib | 746 ++++++++++++++++++++++++++++++++++++++- vignettes/usage.Rmd | 17 33 files changed, 1224 insertions(+), 676 deletions(-)
Title: Gradient Projection Factor Rotation
Description: Gradient Projection Algorithms for Factor Rotation.
For details see ?GPArotation. When using this package, please cite:
Bernaards and Jennrich (2005) <doi:10.1177/0013164404272507>.
"Gradient Projection Algorithms and Software
for Arbitrary Rotation Criteria in Factor Analysis".
Author: Coen Bernaards [aut, cre],
Paul Gilbert [aut],
Robert Jennrich [aut]
Maintainer: Coen Bernaards <cab.gparotation@gmail.com>
Diff between GPArotation versions 2024.2-1 dated 2024-02-04 and 2024.3-1 dated 2024-03-01
DESCRIPTION | 6 - MD5 | 23 ++-- NEWS | 6 + R/RandomStart.R | 1 R/echelon.R | 4 R/eiv.R | 6 - inst/doc/GPAguide.Stex | 2 inst/doc/GPAguide.pdf |binary inst/doc/GPArotateDF.pdf |binary tests/print-GPArotation.R | 50 ++++++++++ tests/rotations.R | 212 +++++++++++++++++++++++++++++++++++++++++++++- tests/rotationsRS.R |only vignettes/GPAguide.Stex | 2 13 files changed, 288 insertions(+), 24 deletions(-)
Title: Simplify the Creation of Choropleth Maps in R
Description: Choropleths are thematic maps where geographic regions, such as
states, are colored according to some metric, such as the number of people
who live in that state. This package simplifies this process by 1.
Providing ready-made functions for creating choropleths of common maps. 2.
Providing data and API connections to interesting data sources for making
choropleths. 3. Providing a framework for creating choropleths from
arbitrary shapefiles. 4. Overlaying those maps over reference maps from
Google Maps.
Author: Ari Lamstein [aut, cre],
Brian Johnson [ctb],
Trulia, Inc. [cph]
Maintainer: Ari Lamstein <ari@lamsteinconsulting.com>
Diff between choroplethr versions 3.7.2 dated 2023-07-06 and 3.7.3 dated 2024-03-01
choroplethr-3.7.2/choroplethr/build |only choroplethr-3.7.2/choroplethr/inst |only choroplethr-3.7.2/choroplethr/vignettes |only choroplethr-3.7.3/choroplethr/DESCRIPTION | 8 ++---- choroplethr-3.7.3/choroplethr/MD5 | 39 ------------------------------ 5 files changed, 4 insertions(+), 43 deletions(-)
Title: Simulation and Prediction with Seasonal ARIMA Models
Description: Functions, classes and methods for time series modelling with ARIMA
and related models. The aim of the package is to provide consistent
interface for the user. For example, a single function autocorrelations()
computes various kinds of theoretical and sample autocorrelations. This is
work in progress, see the documentation and vignettes for the current
functionality. Function sarima() fits extended multiplicative seasonal
ARIMA models with trends, exogenous variables and arbitrary roots on the
unit circle, which can be fixed or estimated (for the algebraic basis for
this see <arXiv:2208.05055>, a paper on the methodology is being prepared).
The suggested package 'FitARMA' can be installed with
'remotes::install_github("cran/FitARMA")' if necessary but is no longer
needed in normal use.
Author: Georgi N. Boshnakov [aut, cre],
Jamie Halliday [aut]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between sarima versions 0.9.1 dated 2022-08-11 and 0.9.2 dated 2024-03-01
DESCRIPTION | 17 ++++++++--------- MD5 | 18 +++++++++--------- NEWS.md | 16 ++++++++++++++-- R/fitTools.R | 22 ++++++++++++++-------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/garch_tests_example.pdf |binary inst/doc/white_noise_tests.pdf |binary src/Makevars | 5 ++++- src/Makevars.win | 5 ++++- 10 files changed, 53 insertions(+), 30 deletions(-)
Title: Disproportionality Functions for Pharmacovigilance
Description: Tools for performing disproportionality analysis using the information component, proportional reporting rate and the reporting odds ratio. The anticipated use is passing data to the da() function, which executes the disproportionality analysis. See Norén et al (2011) <doi:10.1177/0962280211403604> and Montastruc et al (2011) <doi:10.1111/j.1365-2125.2011.04037.x> for further details.
Author: Oskar Gauffin [aut, cre]
Maintainer: Oskar Gauffin <oskar.gauffin@hotmail.com>
Diff between pvda versions 0.0.2 dated 2024-01-18 and 0.0.3 dated 2024-03-01
DESCRIPTION | 13 +++--- MD5 | 28 ++++++------ NAMESPACE | 5 -- NEWS.md | 4 + R/da_object_oriented_functions.R | 4 - R/lower_level_disprop_analysis.R | 30 +++++++------ R/tiny_dataset.R | 6 +- README.md | 11 ++--- build/partial.rdb |binary build/vignette.rds |binary man/apply_rule_of_N.Rd | 6 +- man/ci_for_ic.Rd | 6 +- man/figures/print_console_printout.png |only man/figures/summary_console_printout.png |only man/tiny_dataset.Rd | 6 +- tests/testthat/test-disprop_analysis.R | 67 +++++++++++++++++++++++++++++++ 16 files changed, 130 insertions(+), 56 deletions(-)
Title: Read Data from 'LimeSurvey'
Description: Read data from 'LimeSurvey'
(<https://www.limesurvey.org/>)
in a comfortable way.
Heavily inspired by 'limer'
(<https://github.com/cloudyr/limer/>),
which lacked a few comfort features for me.
Author: Maximilian Hagspiel [aut, cre, cph]
Maintainer: Maximilian Hagspiel <maxhag@mailbox.org>
Diff between ipanema versions 0.6.7 dated 2024-01-30 and 1.1.0 dated 2024-03-01
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/get_survey_data.R | 9 +++++++-- man/get_survey_data.Rd | 6 +++++- 4 files changed, 18 insertions(+), 9 deletions(-)
Title: A Modern and Flexible Web Client for R
Description: The curl() and curl_download() functions provide highly
configurable drop-in replacements for base url() and download.file() with
better performance, support for encryption (https, ftps), gzip compression,
authentication, and other 'libcurl' goodies. The core of the package implements a
framework for performing fully customized requests where data can be processed
either in memory, on disk, or streaming via the callback or connection
interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly
web client see the 'httr' package which builds on this package with http
specific tools and logic.
Author: Jeroen Ooms [aut, cre] ,
Hadley Wickham [ctb],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between curl versions 5.2.0 dated 2023-12-08 and 5.2.1 dated 2024-03-01
DESCRIPTION | 10 +-- MD5 | 64 +++++++++---------- NAMESPACE | 1 NEWS | 10 +++ R/email.R | 11 ++- R/handle.R | 21 +++--- inst/doc/intro.R | 15 ++-- inst/doc/intro.Rmd | 15 ++-- inst/doc/intro.html | 110 ++++++++++++++++------------------ inst/doc/windows.html | 32 ++++----- man/send_mail.Rd | 11 ++- src/Makevars.in | 2 src/Makevars.win | 2 src/callbacks.c | 18 ++--- src/curl.c | 24 +++++-- src/download.c | 28 ++++---- src/escape.c | 8 +- src/fetch.c | 22 +++--- src/findport.c | 2 src/form.c | 30 ++++----- src/getdate.c | 8 +- src/handle.c | 138 ++++++++++++++++++++----------------------- src/ieproxy.c | 68 ++++++++++----------- src/init.c | 1 src/multi.c | 74 +++++++++++------------ src/nslookup.c | 6 - src/reflist.c | 8 +- src/split.c | 6 - src/utils.c | 18 ++--- src/version.c | 44 ++++++------- src/writer.c | 6 - tests/testthat/test-handle.R | 10 +++ vignettes/intro.Rmd | 15 ++-- 33 files changed, 438 insertions(+), 400 deletions(-)
Title: Interface with 'Nominatim' API Service
Description: Lite interface for getting data from 'OSM' service
'Nominatim' <https://nominatim.org/release-docs/latest/>. Extract
coordinates from addresses, find places near a set of coordinates and
return spatial objects on 'sf' format.
Author: Diego Hernangomez [aut, cre, cph]
,
Jindra Lacko [ctb, rev]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between nominatimlite versions 0.2.1 dated 2023-08-15 and 0.3.0 dated 2024-03-01
nominatimlite-0.2.1/nominatimlite/R/data.R |only nominatimlite-0.2.1/nominatimlite/R/geo_amenity.R |only nominatimlite-0.2.1/nominatimlite/R/geo_amenity_sf.R |only nominatimlite-0.2.1/nominatimlite/data |only nominatimlite-0.2.1/nominatimlite/man/geo_amenity_sf.Rd |only nominatimlite-0.2.1/nominatimlite/man/osm_amenities.Rd |only nominatimlite-0.2.1/nominatimlite/tests/testthat/test-geo_amenity.R |only nominatimlite-0.2.1/nominatimlite/tests/testthat/test-geo_amenity_sf.R |only nominatimlite-0.3.0/nominatimlite/DESCRIPTION | 20 nominatimlite-0.3.0/nominatimlite/MD5 | 102 +- nominatimlite-0.3.0/nominatimlite/NAMESPACE | 2 nominatimlite-0.3.0/nominatimlite/NEWS.md | 21 nominatimlite-0.3.0/nominatimlite/R/bbox_to_poly.R | 16 nominatimlite-0.3.0/nominatimlite/R/deprecated.R |only nominatimlite-0.3.0/nominatimlite/R/geo_address_lookup.R | 4 nominatimlite-0.3.0/nominatimlite/R/geo_address_lookup_sf.R | 6 nominatimlite-0.3.0/nominatimlite/R/geo_lite.R | 34 nominatimlite-0.3.0/nominatimlite/R/geo_lite_sf.R | 45 nominatimlite-0.3.0/nominatimlite/R/nominatim_check_access.R | 2 nominatimlite-0.3.0/nominatimlite/R/nominatimlite-package.R | 2 nominatimlite-0.3.0/nominatimlite/R/reverse_geo_lite.R | 24 nominatimlite-0.3.0/nominatimlite/R/reverse_geo_lite_sf.R | 459 +++++----- nominatimlite-0.3.0/nominatimlite/README.md | 87 + nominatimlite-0.3.0/nominatimlite/build/vignette.rds |binary nominatimlite-0.3.0/nominatimlite/inst/REFERENCES.bib | 59 - nominatimlite-0.3.0/nominatimlite/inst/WORDLIST | 20 nominatimlite-0.3.0/nominatimlite/inst/doc/nominatimlite.Rmd | 63 - nominatimlite-0.3.0/nominatimlite/inst/doc/nominatimlite.html | 99 +- nominatimlite-0.3.0/nominatimlite/inst/schemaorg.json | 6 nominatimlite-0.3.0/nominatimlite/man/bbox_to_poly.Rd | 22 nominatimlite-0.3.0/nominatimlite/man/figures/README-line-object-1.png |binary nominatimlite-0.3.0/nominatimlite/man/figures/README-pizzahut-1.png |binary nominatimlite-0.3.0/nominatimlite/man/figures/README-statue_liberty-1.png |binary nominatimlite-0.3.0/nominatimlite/man/figures/lifecycle-archived.svg |only nominatimlite-0.3.0/nominatimlite/man/figures/lifecycle-defunct.svg |only nominatimlite-0.3.0/nominatimlite/man/figures/lifecycle-deprecated.svg |only nominatimlite-0.3.0/nominatimlite/man/figures/lifecycle-experimental.svg |only nominatimlite-0.3.0/nominatimlite/man/figures/lifecycle-maturing.svg |only nominatimlite-0.3.0/nominatimlite/man/figures/lifecycle-questioning.svg |only nominatimlite-0.3.0/nominatimlite/man/figures/lifecycle-soft-deprecated.svg |only nominatimlite-0.3.0/nominatimlite/man/figures/lifecycle-stable.svg |only nominatimlite-0.3.0/nominatimlite/man/figures/lifecycle-superseded.svg |only nominatimlite-0.3.0/nominatimlite/man/figures/logo.png |binary nominatimlite-0.3.0/nominatimlite/man/geo_address_lookup.Rd | 10 nominatimlite-0.3.0/nominatimlite/man/geo_address_lookup_sf.Rd | 251 ++--- nominatimlite-0.3.0/nominatimlite/man/geo_amenity.Rd | 147 --- nominatimlite-0.3.0/nominatimlite/man/geo_lite.Rd | 21 nominatimlite-0.3.0/nominatimlite/man/geo_lite_sf.Rd | 247 ++--- nominatimlite-0.3.0/nominatimlite/man/nominatim_check_access.Rd | 2 nominatimlite-0.3.0/nominatimlite/man/nominatimlite-package.Rd | 2 nominatimlite-0.3.0/nominatimlite/man/reverse_geo_lite.Rd | 8 nominatimlite-0.3.0/nominatimlite/man/reverse_geo_lite_sf.Rd | 21 nominatimlite-0.3.0/nominatimlite/man/roxygen/meta.R | 3 nominatimlite-0.3.0/nominatimlite/tests/testthat.R | 4 nominatimlite-0.3.0/nominatimlite/tests/testthat/_snaps |only nominatimlite-0.3.0/nominatimlite/tests/testthat/test-deprecated.R |only nominatimlite-0.3.0/nominatimlite/tests/testthat/test-geo_lite.R | 279 +++--- nominatimlite-0.3.0/nominatimlite/tests/testthat/test-geo_lite_sf.R | 331 +++---- nominatimlite-0.3.0/nominatimlite/tests/testthat/test-reverse_geo_lite.R | 21 nominatimlite-0.3.0/nominatimlite/tests/testthat/test-reverse_geo_lite_sf.R | 23 nominatimlite-0.3.0/nominatimlite/vignettes/nominatimlite.Rmd | 63 - nominatimlite-0.3.0/nominatimlite/vignettes/references.bib | 59 - 62 files changed, 1380 insertions(+), 1205 deletions(-)
Title: Flexible Bayesian Optimization
Description: A modern and flexible approach to Bayesian Optimization / Model
Based Optimization building on the 'bbotk' package. 'mlr3mbo' is a toolbox
providing both ready-to-use optimization algorithms as well as their fundamental
building blocks allowing for straightforward implementation of custom
algorithms. Single- and multi-objective optimization is supported as well as
mixed continuous, categorical and conditional search spaces. Moreover, using
'mlr3mbo' for hyperparameter optimization of machine learning models within the
'mlr3' ecosystem is straightforward via 'mlr3tuning'. Examples of ready-to-use
optimization algorithms include Efficient Global Optimization by Jones et al.
(1998) <doi:10.1023/A:1008306431147>, ParEGO by Knowles (2006)
<doi:10.1109/TEVC.2005.851274> and SMS-EGO by Ponweiser et al. (2008)
<doi:10.1007/978-3-540-87700-4_78>.
Author: Lennart Schneider [cre, aut] ,
Jakob Richter [aut] ,
Marc Becker [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Florian Pfisterer [aut] ,
Martin Binder [aut],
Sebastian Fischer [aut] ,
Michael H. Buselli [cph],
Wessel Dankers [cph],
Carlos Fonseca [...truncated...]
Maintainer: Lennart Schneider <lennart.sch@web.de>
Diff between mlr3mbo versions 0.2.1 dated 2023-06-05 and 0.2.2 dated 2024-03-01
DESCRIPTION | 8 MD5 | 136 +++--- NAMESPACE | 2 NEWS.md | 14 R/AcqFunction.R | 19 R/AcqFunctionAEI.R | 2 R/AcqFunctionCB.R | 6 R/AcqFunctionEHVI.R | 6 R/AcqFunctionEHVIGH.R | 14 R/AcqFunctionEI.R | 6 R/AcqFunctionEIPS.R | 6 R/AcqFunctionMean.R | 6 R/AcqFunctionPI.R | 6 R/AcqFunctionSD.R | 6 R/AcqFunctionSmsEgo.R | 14 R/AcqOptimizer.R | 134 ++++-- R/OptimizerMbo.R | 27 - R/Surrogate.R | 2 R/SurrogateLearner.R | 18 R/SurrogateLearnerCollection.R | 25 - R/helper.R | 72 ++- R/mbo_defaults.R | 140 ++++-- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/mlr3mbo.R | 71 +-- inst/doc/mlr3mbo.Rmd | 39 - inst/doc/mlr3mbo.html | 489 +++++++++++------------ man/AcqFunction.Rd | 10 man/AcqOptimizer.Rd | 60 ++ man/ResultAssigner.Rd | 4 man/SurrogateLearner.Rd | 8 man/SurrogateLearnerCollection.Rd | 15 man/default_acqfunction.Rd | 2 man/default_acqoptimizer.Rd | 2 man/default_gp.Rd |only man/default_loop_function.Rd | 2 man/default_result_assigner.Rd | 2 man/default_rf.Rd |only man/default_surrogate.Rd | 50 -- man/loop_function.Rd | 4 man/mbo_defaults.Rd | 2 man/mlr_acqfunctions.Rd | 4 man/mlr_acqfunctions_aei.Rd | 10 man/mlr_acqfunctions_cb.Rd | 14 man/mlr_acqfunctions_ehvi.Rd | 12 man/mlr_acqfunctions_ehvigh.Rd | 12 man/mlr_acqfunctions_ei.Rd | 12 man/mlr_acqfunctions_eips.Rd | 12 man/mlr_acqfunctions_mean.Rd | 14 man/mlr_acqfunctions_pi.Rd | 14 man/mlr_acqfunctions_sd.Rd | 14 man/mlr_acqfunctions_smsego.Rd | 14 man/mlr_loop_functions_ego.Rd | 4 man/mlr_loop_functions_emo.Rd | 4 man/mlr_loop_functions_mpcl.Rd | 4 man/mlr_loop_functions_parego.Rd | 4 man/mlr_loop_functions_smsego.Rd | 4 man/mlr_optimizers_mbo.Rd | 18 man/mlr_result_assigners_archive.Rd | 4 man/mlr_result_assigners_surrogate.Rd | 4 man/mlr_tuners_mbo.Rd | 3 tests/testthat/helper.R | 60 +- tests/testthat/test_AcqFunction.R | 33 + tests/testthat/test_AcqOptimizer.R | 23 - tests/testthat/test_OptimizerMbo.R | 21 tests/testthat/test_SurrogateLearner.R | 10 tests/testthat/test_SurrogateLearnerCollection.R | 10 tests/testthat/test_mbo_defaults.R | 31 - vignettes/mlr3mbo.Rmd | 39 - 70 files changed, 972 insertions(+), 867 deletions(-)
Title: Local Regression, Likelihood and Density Estimation
Description: Local regression, likelihood and density estimation methods as described in the 1999 book by Loader.
Author: Catherine Loader [aut],
Jiayang Sun [ctb],
Lucent Technologies [cph],
Andy Liaw [cre]
Maintainer: Andy Liaw <andy_liaw@merck.com>
Diff between locfit versions 1.5-9.8 dated 2023-06-11 and 1.5-9.9 dated 2024-03-01
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/locfit.r | 8 ++++---- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Functional Data Analysis
Description: These functions were developed to support functional data
analysis as described in Ramsay, J. O. and Silverman, B. W.
(2005) Functional Data Analysis. New York: Springer and in
Ramsay, J. O., Hooker, Giles, and Graves, Spencer (2009).
Functional Data Analysis with R and Matlab (Springer).
The package includes data sets and script files working many examples
including all but one of the 76 figures in this latter book. Matlab versions
are available by ftp from
<https://www.psych.mcgill.ca/misc/fda/downloads/FDAfuns/>.
Author: James Ramsay [aut, cre],
Giles Hooker [ctb],
Spencer Graves [ctb]
Maintainer: James Ramsay <ramsay@psych.mcgill.ca>
Diff between fda versions 6.1.4 dated 2023-05-23 and 6.1.7 dated 2024-03-01
DESCRIPTION | 23 -- MD5 | 400 +++++++++++++++++------------------ NAMESPACE | 7 R/Data2fd.R | 148 ++++++------ R/Fperm.fd.R | 187 ++++++++++------ R/Fstat.fd.R | 67 ++--- R/as.fd.R | 18 - R/bsplineS.R | 70 +++--- R/eval.fd.R | 434 +++++++++++++++++++------------------- R/fRegress.double.R | 128 ++++++----- R/fRegress.formula.R | 197 ++++++++++------- R/fRegressArgCheck.R | 3 R/fd.R | 2 R/fdPar.R | 19 - R/smooth.basisPar.R | 3 R/smooth.morph.R | 40 +-- R/smooth.surp.R | 2 R/zerobasis.R | 2 build/vignette.rds |binary inst/doc/BasisBasics.R | 8 inst/doc/BasisBasics.Rmd | 10 inst/doc/BasisBasics.html | 8 inst/doc/monotoneFunctions.R | 11 inst/doc/monotoneFunctions.Rmd | 12 - inst/doc/monotoneFunctions.html | 5 inst/doc/splineFunctions.R | 2 inst/doc/splineFunctions.Rmd | 4 inst/doc/splineFunctions.html | 4 man/AmpPhaseDecomp.Rd | 11 man/CRAN.Rd | 11 man/CSTR.Rd | 28 +- man/CanadianWeather.Rd | 21 + man/Data2fd.Rd | 381 ++++++++++++--------------------- man/Eigen.Rd | 11 man/ElectricDemand.Rd | 18 - man/Fperm.fd.Rd | 53 ++-- man/Fstat.fd.Rd | 14 - man/Lfd.Rd | 10 man/MontrealTemp.Rd | 11 man/ReginaPrecip.Rd | 11 man/arithmetic.basisfd.Rd | 3 man/arithmetic.fd.Rd | 15 + man/as.POSIXct1970.Rd | 11 man/as.array3.Rd | 12 - man/as.fd.Rd | 36 +-- man/axisIntervals.Rd | 12 - man/basisfd.Rd | 9 man/basisfd.product.Rd | 15 + man/bifd.Rd | 11 man/bifdPar.Rd | 19 + man/bsplineS.Rd | 11 man/bsplinepen.Rd | 167 +++++++------- man/cca.fd.Rd | 18 + man/center.fd.Rd | 13 + man/checkDims3.Rd | 11 man/checkLogicalInteger.Rd | 11 man/coef.Rd | 10 man/cor.fd.Rd | 10 man/covPACE.Rd | 10 man/create.basis.Rd | 19 - man/create.constant.basis.Rd | 10 man/create.exponential.basis.Rd | 10 man/create.fourier.basis.Rd | 10 man/create.monomial.basis.Rd | 10 man/create.polygonal.basis.Rd | 22 + man/create.power.basis.Rd | 24 +- man/cumfd.Rd | 10 man/cycleplot.fd.Rd | 14 + man/dateAccessories.Rd | 12 - man/density.fd.Rd | 11 man/deriv.fd.Rd | 13 - man/df.residual.fRegress.Rd | 4 man/df2lambda.Rd | 16 + man/dirs.Rd | 10 man/eigen.pda.rd | 13 + man/eval.basis.Rd | 15 - man/eval.bifd.Rd | 17 + man/eval.fd.Rd | 10 man/eval.monfd.Rd | 10 man/eval.penalty.Rd | 11 man/eval.posfd.Rd | 13 + man/eval.surp.Rd | 19 - man/evaldiag.bifd.Rd | 10 man/expon.Rd | 12 - man/exponentiate.fd.Rd | 12 - man/exponpen.Rd | 16 + man/fRegress.CV.Rd | 17 + man/fRegress.Rd | 202 ++++++++--------- man/fRegress.stderr.Rd | 39 +-- man/fbplot.Rd | 10 man/fd2list.Rd | 12 - man/fdPar.Rd | 22 - man/fdParcheck.Rd | 10 man/fda-package.Rd | 1 man/fdlabels.Rd | 10 man/fourier.Rd | 12 - man/fourierpen.Rd | 16 + man/gait.Rd | 9 man/geigen.Rd | 12 - man/getbasismatrix.Rd | 10 man/getbasispenalty.Rd | 14 + man/getbasisrange.Rd | 13 - man/growth.Rd | 21 + man/handwrit.Rd | 19 - man/infantGrowth.Rd | 27 +- man/inprod.Bspline.Rd | 19 + man/inprod.Rd | 15 + man/int2Lfd.Rd | 10 man/intensity.fd.Rd | 50 ++-- man/is.Lfd.Rd | 17 + man/is.basis.Rd | 10 man/is.eqbasis.Rd | 16 + man/is.fd.Rd | 16 + man/is.fdPar.Rd | 16 + man/is.fdSmooth.Rd | 19 + man/knots.fd.Rd | 10 man/lambda2df.Rd | 12 - man/lambda2gcv.Rd | 10 man/landmarkreg.Rd | 13 - man/lines.fd.Rd | 10 man/linmod.Rd | 14 + man/lip.Rd | 15 - man/lnsrch.Rd | 16 + man/matplot.Rd | 10 man/mean.fd.Rd | 16 + man/melanoma.Rd | 12 - man/monfn.Rd | 3 man/monomial.Rd | 20 + man/monomialpen.Rd | 18 + man/nondurables.Rd | 16 - man/norder.Rd | 10 man/objAndNames.Rd | 11 man/odesolv.Rd | 10 man/pca.fd.Rd | 19 + man/pcaPACE.Rd | 14 + man/pda.fd.Rd | 14 + man/pda.overlay.Rd | 10 man/phaseplanePlot.Rd | 10 man/pinch.Rd | 13 - man/plot.Lfd.Rd | 12 - man/plot.basisfd.Rd | 14 + man/plot.cca.fd.rd | 22 + man/plot.fd.Rd | 26 +- man/plot.pca.fd.Rd | 14 + man/plot.pda.fd.rd | 12 - man/plotbeta.Rd | 12 - man/plotfit.fd.Rd | 13 - man/plotscores.Rd | 12 - man/polintmat.Rd | 22 - man/polyg.Rd | 14 + man/polygpen.Rd | 14 + man/powerbasis.Rd | 14 + man/powerpen.Rd | 14 + man/ppBspline.Rd | 10 man/predict.fRegress.Rd | 15 + man/project.basis.Rd | 12 - man/quadset.Rd | 11 man/reconsCurves.Rd | 10 man/refinery.Rd | 14 - man/register.fd.Rd | 18 - man/register.newfd.Rd | 17 - man/scoresPACE.Rd | 14 + man/sd.Rd | 12 - man/seabird.Rd | 22 + man/smooth.basis.Rd | 456 ++++++++++++++++++++-------------------- man/smooth.basis.sparse.Rd | 12 - man/smooth.basisPar.Rd | 10 man/smooth.bibasis.Rd | 147 ++++++------ man/smooth.fd.Rd | 12 - man/smooth.fdPar.Rd | 26 +- man/smooth.monotone.Rd | 14 - man/smooth.morph.Rd | 10 man/smooth.pos.Rd | 17 + man/smooth.sparse.mean.Rd | 10 man/smooth.surp.Rd | 15 - man/sparse.list.Rd | 10 man/sparse.mat.Rd | 10 man/stepchk.Rd | 12 - man/stepit.Rd | 10 man/sum.fd.Rd | 18 + man/summary.Lfd.Rd | 12 - man/summary.basisfd.Rd | 14 - man/summary.bifd.Rd | 12 - man/summary.fd.Rd | 12 - man/summary.fdPar.Rd | 13 - man/surp.fit.Rd | 15 - man/symsolve.Rd | 10 man/tperm.fd.Rd | 20 + man/trapzmat.Rd | 15 + man/var.fd.Rd | 10 man/varmx.Rd | 14 + man/varmx.cca.fd.Rd | 16 + man/varmx.pca.fd.Rd | 17 + man/vec2Lfd.Rd | 16 + man/wtcheck.Rd | 13 - man/ycheck.Rd | 10 man/zerobasis.Rd | 12 - man/zerofind.Rd | 13 - vignettes/BasisBasics.Rmd | 10 vignettes/monotoneFunctions.Rmd | 12 - vignettes/splineFunctions.Rmd | 4 201 files changed, 3445 insertions(+), 2105 deletions(-)
Title: Extended Rasch Modeling
Description: Fits Rasch models (RM), linear logistic test models (LLTM), rating scale model (RSM), linear rating scale models (LRSM), partial credit models (PCM), and linear partial credit models (LPCM). Missing values are allowed in the data matrix. Additional features are the ML estimation of the person parameters, Andersen's LR-test, item-specific Wald test, Martin-Loef-Test, nonparametric Monte-Carlo Tests, itemfit and personfit statistics including infit and outfit measures, ICC and other plots, automated stepwise item elimination, simulation module for various binary data matrices.
Author: Patrick Mair [cre, aut],
Thomas Rusch [aut],
Reinhold Hatzinger [aut],
Marco J. Maier [aut],
Rudolf Debelak [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between eRm versions 1.0-4 dated 2023-09-28 and 1.0-5 dated 2024-03-01
DESCRIPTION | 8 - MD5 | 12 - R/plotCI.R | 326 ++++++++++++++++++++++++++--------------------------- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 8 + inst/doc/eRm.pdf |binary 7 files changed, 181 insertions(+), 173 deletions(-)
Title: Real-Time Disease Surveillance
Description: Supports modelling real-time case data to facilitate the real-time
surveillance of infectious diseases and other point phenomena. The package provides automated computational grid generation over
an area of interest with methods to map covariates between geographies, model fitting including spatially aggregated case counts,
and predictions and visualisation. Both Bayesian and maximum likelihood methods are provided. Log-Gaussian Cox Processes are described by
Diggle et al. (2013) <doi:10.1214/13-STS441> and we provide both the low-rank approximation for Gaussian processes
described by Solin and Särkkä (2020) <doi:10.1007/s11222-019-09886-w> and Riutort-Mayol et al (2020) <arXiv:2004.11408> and the
nearest neighbour Gaussian process described by Datta et al (2016) <doi:10.1080/01621459.2015.1044091>. 'cmdstanr' can be downloaded at <https://mc-stan.org/cmdstanr/>.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <s.i.watson@bham.ac.uk>
Diff between rts2 versions 0.6.1 dated 2024-01-25 and 0.7.1 dated 2024-03-01
rts2-0.6.1/rts2/README.md |only rts2-0.6.1/rts2/inst/cmdstan/approxlgcp_cmd.stan |only rts2-0.6.1/rts2/inst/cmdstan/approxlgcp_nngp_L_cmd.stan |only rts2-0.6.1/rts2/inst/cmdstan/approxlgcp_nngp_cmd.stan |only rts2-0.6.1/rts2/inst/cmdstan/approxlgcp_nngp_region_L_cmd.stan |only rts2-0.6.1/rts2/inst/cmdstan/approxlgcp_nngp_region_cmd.stan |only rts2-0.6.1/rts2/inst/cmdstan/approxlgcp_region_cmd.stan |only rts2-0.6.1/rts2/inst/cmdstan/lgcp_cmd.stan |only rts2-0.6.1/rts2/inst/cmdstan/lgcp_region_cmd.stan |only rts2-0.6.1/rts2/inst/cmdstan/mcml_poisson_cmd.stan |only rts2-0.6.1/rts2/inst/cmdstan/mcml_poisson_region_cmd.stan |only rts2-0.6.1/rts2/inst/stan/approxlgcp.stan |only rts2-0.6.1/rts2/inst/stan/approxlgcp_nngp.stan |only rts2-0.6.1/rts2/inst/stan/approxlgcp_nngp_region.stan |only rts2-0.6.1/rts2/inst/stan/approxlgcp_region.stan |only rts2-0.6.1/rts2/inst/stan/lgcp.stan |only rts2-0.6.1/rts2/inst/stan/lgcp_region.stan |only rts2-0.6.1/rts2/inst/stan/mcml_poisson.stan |only rts2-0.6.1/rts2/inst/stan/mcml_poisson_region.stan |only rts2-0.6.1/rts2/man/print.mcmlrts.Rd |only rts2-0.6.1/rts2/man/summary.mcmlrts.Rd |only rts2-0.6.1/rts2/src/stanExports_approxlgcp.cc |only rts2-0.6.1/rts2/src/stanExports_approxlgcp.h |only rts2-0.6.1/rts2/src/stanExports_approxlgcp_nngp.cc |only rts2-0.6.1/rts2/src/stanExports_approxlgcp_nngp.h |only rts2-0.6.1/rts2/src/stanExports_approxlgcp_nngp_region.cc |only rts2-0.6.1/rts2/src/stanExports_approxlgcp_nngp_region.h |only rts2-0.6.1/rts2/src/stanExports_approxlgcp_region.cc |only rts2-0.6.1/rts2/src/stanExports_approxlgcp_region.h |only rts2-0.6.1/rts2/src/stanExports_lgcp.cc |only rts2-0.6.1/rts2/src/stanExports_lgcp.h |only rts2-0.6.1/rts2/src/stanExports_lgcp_region.cc |only rts2-0.6.1/rts2/src/stanExports_lgcp_region.h |only rts2-0.6.1/rts2/src/stanExports_mcml_poisson.cc |only rts2-0.6.1/rts2/src/stanExports_mcml_poisson.h |only rts2-0.6.1/rts2/src/stanExports_mcml_poisson_region.cc |only rts2-0.6.1/rts2/src/stanExports_mcml_poisson_region.h |only rts2-0.7.1/rts2/DESCRIPTION | 14 rts2-0.7.1/rts2/MD5 | 111 - rts2-0.7.1/rts2/NAMESPACE | 13 rts2-0.7.1/rts2/R/RcppExports.R | 20 rts2-0.7.1/rts2/R/griddata_class.R | 905 +++++----- rts2-0.7.1/rts2/R/print_mcmlrts.R | 311 ++- rts2-0.7.1/rts2/R/stanmodels.R | 18 rts2-0.7.1/rts2/inst/cmdstan/rtsapproxlgcp_cmd.stan |only rts2-0.7.1/rts2/inst/cmdstan/rtsapproxlgcp_nngp_L_cmd.stan |only rts2-0.7.1/rts2/inst/cmdstan/rtsapproxlgcp_nngp_cmd.stan |only rts2-0.7.1/rts2/inst/cmdstan/rtsapproxlgcp_nngp_region_L_cmd.stan |only rts2-0.7.1/rts2/inst/cmdstan/rtsapproxlgcp_nngp_region_cmd.stan |only rts2-0.7.1/rts2/inst/cmdstan/rtsapproxlgcp_region_cmd.stan |only rts2-0.7.1/rts2/inst/cmdstan/rtslgcp_cmd.stan |only rts2-0.7.1/rts2/inst/cmdstan/rtslgcp_region_cmd.stan |only rts2-0.7.1/rts2/inst/cmdstan/rtsmcml_poisson_cmd.stan |only rts2-0.7.1/rts2/inst/cmdstan/rtsmcml_poisson_region_cmd.stan |only rts2-0.7.1/rts2/inst/include/rts/rtsmodel.h | 71 rts2-0.7.1/rts2/inst/include/rts/rtsmodeloptim.h | 439 +++- rts2-0.7.1/rts2/inst/include/rts/rtsregionmodel.h | 150 + rts2-0.7.1/rts2/inst/include/rts/rtsregionmodeloptim.h | 405 +++- rts2-0.7.1/rts2/inst/include/rtsheader.h | 3 rts2-0.7.1/rts2/inst/stan/rtsapproxlgcp.stan |only rts2-0.7.1/rts2/inst/stan/rtsapproxlgcp_nngp.stan |only rts2-0.7.1/rts2/inst/stan/rtsapproxlgcp_nngp_region.stan |only rts2-0.7.1/rts2/inst/stan/rtsapproxlgcp_region.stan |only rts2-0.7.1/rts2/inst/stan/rtslgcp.stan |only rts2-0.7.1/rts2/inst/stan/rtslgcp_region.stan |only rts2-0.7.1/rts2/inst/stan/rtsmcml_poisson.stan |only rts2-0.7.1/rts2/inst/stan/rtsmcml_poisson_region.stan |only rts2-0.7.1/rts2/man/coef.rtsFit.Rd |only rts2-0.7.1/rts2/man/covariance.parameters.Rd |only rts2-0.7.1/rts2/man/fixed.effects.Rd |only rts2-0.7.1/rts2/man/grid.Rd | 421 +++- rts2-0.7.1/rts2/man/logLik.rtsFit.Rd |only rts2-0.7.1/rts2/man/print.rtsFit.Rd |only rts2-0.7.1/rts2/man/print.rtsFitSummary.Rd |only rts2-0.7.1/rts2/man/random.effects.Rd |only rts2-0.7.1/rts2/man/summary.rtsFit.Rd |only rts2-0.7.1/rts2/src/Makevars.win | 2 rts2-0.7.1/rts2/src/RcppExports.cpp | 102 - rts2-0.7.1/rts2/src/model_module.cpp | 6 rts2-0.7.1/rts2/src/model_module_extension.cpp | 58 rts2-0.7.1/rts2/src/stanExports_rtsapproxlgcp.cc |only rts2-0.7.1/rts2/src/stanExports_rtsapproxlgcp.h |only rts2-0.7.1/rts2/src/stanExports_rtsapproxlgcp_nngp.cc |only rts2-0.7.1/rts2/src/stanExports_rtsapproxlgcp_nngp.h |only rts2-0.7.1/rts2/src/stanExports_rtsapproxlgcp_nngp_region.cc |only rts2-0.7.1/rts2/src/stanExports_rtsapproxlgcp_nngp_region.h |only rts2-0.7.1/rts2/src/stanExports_rtsapproxlgcp_region.cc |only rts2-0.7.1/rts2/src/stanExports_rtsapproxlgcp_region.h |only rts2-0.7.1/rts2/src/stanExports_rtslgcp.cc |only rts2-0.7.1/rts2/src/stanExports_rtslgcp.h |only rts2-0.7.1/rts2/src/stanExports_rtslgcp_region.cc |only rts2-0.7.1/rts2/src/stanExports_rtslgcp_region.h |only rts2-0.7.1/rts2/src/stanExports_rtsmcml_poisson.cc |only rts2-0.7.1/rts2/src/stanExports_rtsmcml_poisson.h |only rts2-0.7.1/rts2/src/stanExports_rtsmcml_poisson_region.cc |only rts2-0.7.1/rts2/src/stanExports_rtsmcml_poisson_region.h |only 96 files changed, 2002 insertions(+), 1047 deletions(-)
Title: Plot Null Hypothesis Significance Tests
Description: Illustrate graphically the most common Null Hypothesis Significance Testing procedures. More specifically, this package provides functions to plot Chi-Squared, F, t (one- and two-tailed) and z (one- and two-tailed) tests, by plotting the probability density under the null hypothesis as a function of the different test statistic values. Although highly flexible (color theme, fonts, etc.), only the minimal number of arguments (observed test statistic, degrees of freedom) are necessary for a clear and useful graph to be plotted, with the observed test statistic and the p value, as well as their corresponding value labels. The axes are automatically scaled to present the relevant part and the overall shape of the probability density function. This package is especially intended for education purposes, as it provides a helpful support to help explain the Null Hypothesis Significance Testing process, its use and/or shortcomings.
Author: Nils Myszkowski [aut, cre]
Maintainer: Nils Myszkowski <nilsmyszkowskiscience@gmail.com>
Diff between nhstplot versions 1.2.0 dated 2023-04-11 and 1.3.0 dated 2024-03-01
DESCRIPTION | 10 +++--- MD5 | 30 ++++++++++---------- NEWS.md | 4 ++ R/plot.chisqtest.R | 34 ++++++++++++++--------- R/plot.ftest.R | 30 ++++++++++++-------- R/plot.ttest.R | 58 ++++++++++++++++++++++++--------------- R/plot.ztest.R | 63 +++++++++++++++++++++++++++--------------- build/vignette.rds |binary inst/doc/nhstplot.R | 3 ++ inst/doc/nhstplot.Rmd | 10 ++++++ inst/doc/nhstplot.html | 72 ++++++++++++++++++++++++++++--------------------- man/plotchisqtest.Rd | 8 ++--- man/plotftest.Rd | 8 ++--- man/plotttest.Rd | 10 +++--- man/plotztest.Rd | 12 ++++---- vignettes/nhstplot.Rmd | 10 ++++++ 16 files changed, 224 insertions(+), 138 deletions(-)
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is
a socket library implementing 'Scalability Protocols', a reliable,
high-performance standard for common communications patterns including
publish/subscribe, request/reply and service discovery, over in-process,
IPC, TCP, WebSocket and secure TLS transports. As its own threaded
concurrency framework, provides a toolkit for asynchronous programming and
distributed computing, with intuitive 'aio' objects which resolve
automatically upon completion of asynchronous operations, and
synchronisation primitives allowing R to wait upon events signalled by
concurrent threads.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph],
R Consortium [fnd]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between nanonext versions 0.13.0 dated 2024-02-07 and 0.13.2 dated 2024-03-01
nanonext-0.13.0/nanonext/src/nng-f338f50.tar.xz |only nanonext-0.13.2/nanonext/DESCRIPTION | 6 +- nanonext-0.13.2/nanonext/MD5 | 44 +++++++++--------- nanonext-0.13.2/nanonext/NEWS.md | 8 +++ nanonext-0.13.2/nanonext/R/docs.R | 17 ++++++- nanonext-0.13.2/nanonext/R/socket.R | 2 nanonext-0.13.2/nanonext/README.md | 8 +-- nanonext-0.13.2/nanonext/configure | 10 ++-- nanonext-0.13.2/nanonext/configure.ucrt | 2 nanonext-0.13.2/nanonext/inst/doc/nanonext.Rmd | 29 +++++------- nanonext-0.13.2/nanonext/inst/doc/nanonext.html | 29 +++++------- nanonext-0.13.2/nanonext/man/transports.Rd | 17 ++++++- nanonext-0.13.2/nanonext/src/Makevars.win | 6 +- nanonext-0.13.2/nanonext/src/aio.c | 17 ++----- nanonext-0.13.2/nanonext/src/core.c | 23 ++------- nanonext-0.13.2/nanonext/src/init.c | 21 -------- nanonext-0.13.2/nanonext/src/mbedtls-daca7a3.tar.xz |binary nanonext-0.13.2/nanonext/src/nanonext.h | 16 +++++- nanonext-0.13.2/nanonext/src/nng-daa5521.tar.xz |only nanonext-0.13.2/nanonext/src/protocol.c | 7 -- nanonext-0.13.2/nanonext/src/thread.c | 45 ++++++++----------- nanonext-0.13.2/nanonext/src/utils.c | 20 ++------ nanonext-0.13.2/nanonext/vignettes/nanonext.Rmd | 29 +++++------- nanonext-0.13.2/nanonext/vignettes/nanonext.Rmd.orig | 16 +++--- 24 files changed, 186 insertions(+), 186 deletions(-)
Title: Biomarker Confirmation, Selection, Modelling, Prediction, and
Validation
Description: There are diverse purposes such as biomarker confirmation, novel biomarker discovery, constructing predictive models, model-based prediction, and validation.
It handles binary, continuous, and time-to-event outcomes at the sample or patient level.
- Biomarker confirmation utilizes established functions like glm() from 'stats', coxph() from 'survival', surv_fit(), and ggsurvplot() from 'survminer'.
- Biomarker discovery and variable selection are facilitated by three LASSO-related functions LASSO2(), LASSO_plus(), and LASSO2plus(), leveraging the 'glmnet' R package with additional steps.
- Eight versatile modeling functions are offered, each designed for predictive models across various outcomes and data types.
1) LASSO2(), LASSO_plus(), LASSO2plus(), and LASSO2_reg() perform variable selection using LASSO methods and construct predictive models based on selected variables.
2) XGBtraining() employs 'XGBoost' for model building and is the only function not involving variable selection.
3 [...truncated...]
Author: Aixiang Jiang [aut, cre, cph]
Maintainer: Aixiang Jiang <aijiang@bccrc.ca>
Diff between csmpv versions 1.0.1 dated 2024-01-10 and 1.0.3 dated 2024-03-01
DESCRIPTION | 28 MD5 | 92 - R/LASSO2.R | 470 ++++---- R/LASSO2_XGBtraining.R | 16 R/LASSO2_predict.R | 267 ++-- R/LASSO2_reg.R | 177 +-- R/LASSO2plus.R | 15 R/LASSO2plus_XGBtraining.R | 206 +-- R/LASSO2plus_binary.R | 8 R/LASSO2plus_continuous.R | 11 R/LASSO2plus_timeToEvent.R | 8 R/LASSO_plus.R | 205 +-- R/LASSO_plus_XGBtraining.R | 11 R/LASSO_plus_binary.R | 275 ++--- R/LASSO_plus_continuous.R | 248 ++-- R/LASSO_plus_timeToEvent.R | 267 ++-- R/XGBtraining.R | 315 ++--- R/XGBtraining_predict.R | 183 +-- R/XGpred.R | 115 +- R/XGpred_predict.R | 42 R/confirmVars.R | 306 ++--- R/coxTimeToEvent.R | 4 R/csmpvModelling.R | 134 +- R/gettValue.R | 8 R/rms_model.R | 104 - R/validate_continuous.R | 127 +- R/validation.R | 250 ++-- inst/doc/csmpv_vignette.R | 50 inst/doc/csmpv_vignette.html | 1335 +++++++++++------------- inst/doc/csmpv_vignette.rmd | 2307 +++++++++++++++++++++--------------------- man/LASSO2.Rd | 7 man/LASSO2_XGBtraining.Rd | 16 man/LASSO2_predict.Rd | 19 man/LASSO2_reg.Rd | 38 man/LASSO2plus.Rd | 14 man/LASSO2plus_XGBtraining.Rd | 21 man/LASSO_plus.Rd | 14 man/LASSO_plus_XGBtraining.Rd | 11 man/XGBtraining.Rd | 22 man/XGBtraining_predict.Rd | 16 man/XGpred.Rd | 53 man/XGpred_predict.Rd | 32 man/confirmVars.Rd | 8 man/csmpvModelling.Rd | 21 man/rms_model.Rd | 17 man/validation.Rd | 26 vignettes/csmpv_vignette.rmd | 2307 +++++++++++++++++++++--------------------- 47 files changed, 5056 insertions(+), 5170 deletions(-)
Title: Multidimensional Scaling
Description: Implements the following approaches for multidimensional scaling (MDS) based on stress minimization using majorization (smacof): ratio/interval/ordinal/spline MDS on symmetric dissimilarity matrices, MDS with external constraints on the configuration, individual differences scaling (idioscal, indscal), MDS with spherical restrictions, and ratio/interval/ordinal/spline unfolding (circular restrictions, row-conditional). Various tools and extensions like jackknife MDS, bootstrap MDS, permutation tests, MDS biplots, gravity models, unidimensional scaling, drift vectors (asymmetric MDS), classical scaling, and Procrustes are implemented as well.
Author: Patrick Mair [aut, cre],
Jan De Leeuw [aut],
Patrick J. F. Groenen [aut],
Ingwer Borg [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between smacof versions 2.1-5 dated 2022-05-06 and 2.1-6 dated 2024-03-01
smacof-2.1-5/smacof/R/mds.R |only smacof-2.1-6/smacof/DESCRIPTION | 8 smacof-2.1-6/smacof/MD5 | 37 +- smacof-2.1-6/smacof/R/smacofConstraint.R | 4 smacof-2.1-6/smacof/R/smacofSym.R | 2 smacof-2.1-6/smacof/build/partial.rdb |binary smacof-2.1-6/smacof/build/vignette.rds |binary smacof-2.1-6/smacof/inst/CITATION | 45 +-- smacof-2.1-6/smacof/inst/NEWS.Rd | 8 smacof-2.1-6/smacof/inst/doc/mdsnutshell.R | 2 smacof-2.1-6/smacof/inst/doc/mdsnutshell.html | 279 ++++++++++---------- smacof-2.1-6/smacof/inst/doc/smacof.R | 18 - smacof-2.1-6/smacof/inst/doc/smacof.Rnw | 22 - smacof-2.1-6/smacof/inst/doc/smacof.pdf |binary smacof-2.1-6/smacof/inst/doc/unfoldingnutshell.R | 2 smacof-2.1-6/smacof/inst/doc/unfoldingnutshell.html | 199 +++++++------- smacof-2.1-6/smacof/man/morsescales.Rd | 31 -- smacof-2.1-6/smacof/man/permtest.smacof.Rd | 2 smacof-2.1-6/smacof/man/svm_mdsplot.Rd | 5 smacof-2.1-6/smacof/vignettes/smacof.Rnw | 22 - 20 files changed, 343 insertions(+), 343 deletions(-)
Title: Data Mining of Plant Diversity and Distribution
Description: Produces diversity estimates and species lists with associated global distribution for any vascular plant family and genus from 'Plants of the World Online' database <https://powo.science.kew.org/>, by interacting with the source code of each plant taxon page. It also creates global maps of species richness, graphics of species discoveries and nomenclatural changes over time.
Author: Debora Zuanny [aut, cre, cph] ,
Domingos Cardoso [aut, ctb, cph]
Maintainer: Debora Zuanny <deborazuanny@gmail.com>
Diff between expowo versions 1.0 dated 2023-02-22 and 2.0 dated 2024-03-01
expowo-1.0/expowo/R/getDist.R |only expowo-1.0/expowo/R/getGenURI.R |only expowo-1.0/expowo/R/getNumb.R |only expowo-1.0/expowo/README.md |only expowo-1.0/expowo/build |only expowo-1.0/expowo/inst |only expowo-1.0/expowo/vignettes |only expowo-2.0/expowo/DESCRIPTION | 16 expowo-2.0/expowo/MD5 | 102 -- expowo-2.0/expowo/NAMESPACE | 31 expowo-2.0/expowo/R/accGraph.R |only expowo-2.0/expowo/R/auxiliary_functions.R | 498 ++++++++++--- expowo-2.0/expowo/R/data.R | 25 expowo-2.0/expowo/R/defensive_functions.R | 98 ++ expowo-2.0/expowo/R/getInfo.R |only expowo-2.0/expowo/R/get_year_pubs.R |only expowo-2.0/expowo/R/globals.R | 4 expowo-2.0/expowo/R/megaGen.R | 221 +++-- expowo-2.0/expowo/R/powoFam.R | 72 + expowo-2.0/expowo/R/powoGenera.R | 235 ++---- expowo-2.0/expowo/R/powoMap.R | 1007 +++++++++++++-------------- expowo-2.0/expowo/R/powoSpDist.R | 210 +---- expowo-2.0/expowo/R/powoSpecies.R | 375 ++-------- expowo-2.0/expowo/R/saveCSV.R |only expowo-2.0/expowo/R/topGen.R | 73 + expowo-2.0/expowo/data/POWOcodes.rda |binary expowo-2.0/expowo/man/POWOcodes.Rd | 11 expowo-2.0/expowo/man/accGraph.Rd |only expowo-2.0/expowo/man/angioData.Rd | 36 expowo-2.0/expowo/man/angioGenera.Rd | 36 expowo-2.0/expowo/man/botregions.Rd | 2 expowo-2.0/expowo/man/figures/expowo_pkg.png |binary expowo-2.0/expowo/man/get_year_pubs.Rd |only expowo-2.0/expowo/man/megaGen.Rd | 124 +-- expowo-2.0/expowo/man/powoFam.Rd | 31 expowo-2.0/expowo/man/powoGenera.Rd | 60 + expowo-2.0/expowo/man/powoMap.Rd | 19 expowo-2.0/expowo/man/powoSpDist.Rd | 43 - expowo-2.0/expowo/man/powoSpecies.Rd | 61 + expowo-2.0/expowo/man/saveCSV.Rd |only expowo-2.0/expowo/man/topGen.Rd | 120 +-- 41 files changed, 1840 insertions(+), 1670 deletions(-)
Title: Data Science Labs
Description: Datasets and functions that can be used for data analysis practice, homework and projects in data science courses and workshops. 26 datasets are available for case studies in data visualization, statistical inference, modeling, linear regression, data wrangling and machine learning.
Author: Rafael A. Irizarry, Amy Gill
Maintainer: Rafael A. Irizarry <rafael_irizarry@dfci.harvard.edu>
Diff between dslabs versions 0.7.6 dated 2023-07-16 and 0.8.0 dated 2024-03-01
DESCRIPTION | 8 +++--- MD5 | 44 +++++++++++++++++++++-------------- R/heights.R | 13 ++++++---- R/mnist_127.R |only R/pr_death_counts.R |only R/read_mnist.R | 4 --- R/reported_heights.R | 6 ++-- R/temp_carbon.R | 4 ++- R/trump_tweets.R | 4 ++- data/mnist_127.rda |only data/mnist_27.rda |binary data/pr-death-counts.rda |only data/trump_tweets.rda |binary inst/extdata/calificaciones.csv |only inst/script/make-calificaciones.R |only inst/script/make-mice_weights.R | 4 +-- inst/script/make-mnist_127.R |only inst/script/make-mnist_27.R | 4 +-- inst/script/make-murders-rda.R | 4 +-- inst/script/make-pr_death_counts.R |only inst/script/make-trump_tweets.R | 46 +++++++++++++++++++++++++++++++------ man/heights.Rd | 11 +++++--- man/mnist_127.Rd |only man/pr_death_counts.Rd |only man/read_mnist.Rd | 3 -- man/reported_heights.Rd | 6 ++-- man/temp_carbon.Rd | 2 - man/trump_tweets.Rd | 3 +- 28 files changed, 108 insertions(+), 58 deletions(-)
Title: Estimation in Difference-in-Difference Designs with Multiple
Groups and Periods
Description: Estimation of event-study Difference-in-Difference (DID) estimators in designs with multiple groups and periods, and with a potentially non-binary treatment that may increase or decrease multiple times.
Author: Diego Ciccia [aut, cre],
Felix Knau [aut],
Melitine Malezieux [aut],
Doulo Sow [aut],
Clement de Chaisemartin [aut]
Maintainer: Diego Ciccia <diego.ciccia@sciencespo.fr>
Diff between DIDmultiplegtDYN versions 1.0.4 dated 2024-02-23 and 1.0.5 dated 2024-03-01
DESCRIPTION | 6 +++--- MD5 | 14 ++++++++------ NEWS.md | 8 +++++++- R/did_multiplegt_bootstrap.R |only R/did_multiplegt_dyn.R | 22 ++++++++++++++++++---- R/did_multiplegt_main.R | 16 +++++++++++++--- R/print.R | 7 +++++-- R/progressBar.R |only man/did_multiplegt_dyn.Rd | 5 ++++- 9 files changed, 58 insertions(+), 20 deletions(-)
More information about DIDmultiplegtDYN at CRAN
Permanent link
Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains little R code or documentation. The main reference is the vignette. There is a shared object containing part of the 'CVODES' library, but its functionality is not accessible from R. 'StanHeaders' is primarily useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The [...truncated...]
Author: Ben Goodrich [cre, aut],
Joshua Pritikin [ctb],
Andrew Gelman [aut],
Bob Carpenter [aut],
Matt Hoffman [aut],
Daniel Lee [aut],
Michael Betancourt [aut],
Marcus Brubaker [aut],
Jiqiang Guo [aut],
Peter Li [aut],
Allen Riddell [aut],
Marco Inacio [aut [...truncated...]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between StanHeaders versions 2.32.5 dated 2024-01-10 and 2.32.6 dated 2024-03-01
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- build/vignette.rds |binary inst/doc/stanmath.R | 6 +++--- inst/doc/stanmath.html | 8 ++++---- inst/include/stan/math/memory/stack_alloc.hpp | 3 ++- inst/include/stan/math/prim/fun/max.hpp | 2 +- inst/include/stan/math/prim/fun/min.hpp | 2 +- 8 files changed, 23 insertions(+), 22 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Collection of custom input controls and user interface components for 'Shiny' applications.
Give your applications a unique and colorful style !
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
David Granjon [aut],
Ian Fellows [ctb] ,
Wil Davis [ctb] ,
Spencer Matthews [ctb] ,
JavaScript and CSS libraries authors [ctb, cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.8.1 dated 2024-01-10 and 0.8.2 dated 2024-03-01
DESCRIPTION | 8 MD5 | 79 NEWS.md | 932 +++---- R/bootstrap-utils.R | 264 +- R/dependencies.R | 1074 ++++---- R/input-airDatepicker.R | 2 R/input-awesomeradio.R | 55 R/input-search.R | 1 R/input-selectpicker.R | 685 ++--- R/module-pickerGroup.R | 606 ++-- R/progressBars.R | 59 R/sw-dropdown.R | 572 ++-- R/sweetalert.R | 1246 +++++----- R/virtual-select.R | 556 ++-- README.md | 650 ++--- inst/assets/bootstrap-select/picker-bindings.js | 220 - inst/assets/numericRange/js/numericRange-bindings.js | 124 inst/assets/progress-bars/progress-bars-bindings.js | 2 inst/assets/shinyWidgets-bindings.min.js | 2 inst/assets/sweetalert2/css/sweetalert2.min.css | 2 inst/assets/sweetalert2/js/sweetalert2.min.js | 4 inst/assets/sweetalert2/sweetalert-bindings.js | 235 - inst/assets/utils.js | 32 inst/assets/vertical-tab-panel/vertical-tab-panel-bindings.js | 204 - inst/examples/airDatepicker/datepicker/app.R | 276 +- inst/examples/checkboxGroupButtons/server.R | 98 inst/examples/radioGroupButtons/server.R | 98 inst/examples/shinyWidgets/ui.R | 4 inst/examples/virtual-select/bslib-theming |only inst/packer/air-datepicker.js | 2 inst/packer/virtual-select.js | 817 ++++++ man/demoVirtualSelect.Rd | 5 man/prepare_choices.Rd | 5 man/progress-bar.Rd | 16 man/shinyWidgets.Rd | 2 man/updateAwesomeRadio.Rd | 41 man/virtualSelectInput.Rd | 95 tests/testthat/test-checkboxGroupButtons.R | 398 +-- tests/testthat/test-radioGroupButtons.R | 398 +-- tests/testthat/test-updateCheckboxGroupButtons.R | 90 tests/testthat/test-updateRadioGroupButtons.R | 90 41 files changed, 5485 insertions(+), 4564 deletions(-)
Title: Bioacoustic Analysis and Publication Tools
Description: Provides tools for manipulating sound files for bioacoustic
analysis, and preparing analyses these for publication. The package validates
that values are physically possible wherever feasible.
Author: Ed Baker [aut, cre] ,
Quentin Geissman [ctb]
Maintainer: Ed Baker <ed@ebaker.me.uk>
Diff between sonicscrewdriver versions 0.0.5 dated 2024-02-22 and 0.0.6 dated 2024-03-01
DESCRIPTION | 6 MD5 | 348 ++++++------ NAMESPACE | 350 ++++++------- NEWS.md | 7 R/STP.R | 8 R/ab_seqss.R | 54 +- R/acousticAlgebra.R | 198 +++---- R/audio_filesize.R | 46 - R/audioblast.R | 119 ++-- R/autoBandPass.R | 92 +-- R/beatComplexity.R | 80 +- R/beatSpectrum.R | 102 +-- R/birdnetReticulate.R | 284 +++++----- R/convertPressures.R | 102 +-- R/convertTemperatures.R | 150 ++--- R/convertTime.R | 184 +++--- R/cutws.R | 80 +- R/dayPhase.R | 338 ++++++------ R/defaultCluster.R | 62 +- R/directionPlot.R | 68 +- R/dolbear.R | 54 +- R/dutyCycle.R | 68 +- R/exponential_backoff.R | 26 R/frequency.R | 124 ++-- R/generateNoise.R | 180 +++--- R/generateTimeMask.R | 92 +-- R/generateTimeShift.R | 152 ++--- R/googleSpeech.R | 116 ++-- R/indexSpec.R | 104 +-- R/jitter.R | 88 +-- R/labels.R | 144 ++--- R/ntd.R | 64 +- R/packageManagement.R | 48 - R/parseFilename.R | 368 ++++++------- R/pulseDetection.R | 48 - R/pulseDetection_dietrich.R | 192 +++---- R/pulseDetection_simple.R | 74 +- R/pulseDetection_threshold.R | 88 +-- R/pulseIntervals.R | 70 +- R/pulseStats.R | 20 R/radar.R | 78 +- R/rainfallDetection.R | 50 - R/rainfall_bedoya2017.R | 34 - R/respeaker6.R | 42 - R/reticulate.R | 40 - R/sDuration.R | 122 ++-- R/sheepFrequencyStats.R | 8 R/shimmer.R | 82 +-- R/soundSpeed.R | 274 +++++----- R/specStats.R | 166 +++--- R/spectraMaths.R | 188 +++---- R/ste.R | 72 +- R/time.R | 14 R/upsample.R | 104 +-- R/utils-plot.R | 66 +- R/wavelength.R | 20 R/windowing.R | 166 +++--- R/zerocrossing.R | 48 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 14 inst/REFERENCES.bib | 88 +-- inst/WORDLIST | 206 +++---- inst/doc/audioblast.R | 18 inst/doc/audioblast.Rmd | 58 +- inst/doc/audioblast.html | 760 ++++++++++++++-------------- inst/doc/manage_audio.R | 26 inst/doc/manage_audio.html | 830 +++++++++++++++---------------- inst/doc/sonicscrewdriver.R | 18 inst/doc/sonicscrewdriver.html | 736 +++++++++++++-------------- man/PseudoWave-class.Rd | 58 +- man/PseudoWave-numeric-method.Rd | 34 - man/STP.Rd | 32 - man/TaggedWave-class.Rd | 36 - man/TaggedWaveMC-class.Rd | 36 - man/TimeRegion-class.Rd | 38 - man/WaveFilter-class.Rd | 48 - man/ab_diel_traits.Rd | 46 - man/addSpectra.Rd | 58 +- man/allChannels.Rd | 76 +- man/audio_filesize.Rd | 62 +- man/audioblast.Rd | 104 ++- man/audioblastDownload.Rd | 60 +- man/autoBandPass.Rd | 64 +- man/bandpass.Rd | 66 +- man/beatComplexity.Rd | 56 +- man/beatSpectrum.Rd | 78 +- man/birdNetAnalyse.Rd | 78 +- man/birdNetInstall.Rd | 42 - man/circularise.Rd | 32 - man/convert2Celsius.Rd | 48 - man/convert2Fahrenheit.Rd | 44 - man/convert2Kelvin.Rd | 48 - man/convert2Pascals.Rd | 48 - man/convert2bytes.Rd | 38 - man/convert2dyne_cm2.Rd | 40 - man/convert2seconds.Rd | 44 - man/corWaveMC.Rd | 52 - man/cutws.Rd | 62 +- man/data2Wave.Rd | 72 +- man/dayPhase.Rd | 66 +- man/dayPhases.Rd | 40 - man/daysPhases.Rd | 62 +- man/defaultCluster.Rd | 56 +- man/dielFraction.Rd | 38 - man/dielHistogram.Rd | 68 +- man/dielLabels.Rd | 38 - man/dielPlot.Rd | 74 +- man/dielPositions.Rd | 38 - man/dielRings.Rd | 68 +- man/dolbear.Rd | 54 +- man/dutyCycle.Rd | 56 +- man/emptyDiel.Rd | 32 - man/emptyYearly.Rd | 36 - man/entropyStats.Rd | 48 - man/frequencySound.Rd | 44 - man/frequencyStats.Rd | 46 - man/generateNoise.Rd | 76 +- man/generateTimeMask.Rd | 44 - man/gs_transcribe.Rd | 54 +- man/humanBytes.Rd | 36 - man/jitter.Rd | 52 - man/labelPadding.Rd | 54 +- man/labelReduction.Rd | 46 - man/naturalFrequency.Rd | 56 +- man/ntd.Rd | 54 +- man/parseFilename.Rd | 130 ++-- man/pd_dietrich2004.Rd | 74 +- man/pd_simple.Rd | 68 +- man/plus-PseudoWave-numeric-method.Rd | 34 - man/plus-numeric-PseudoWave-method.Rd | 34 - man/pulseDetection.Rd | 36 - man/pulseIntervals.Rd | 38 - man/radarRange.Rd | 52 - man/radialPolygon.Rd | 88 +-- man/rainfallDetection.Rd | 56 +- man/readAudio.Rd | 54 +- man/readBirdNet.Rd | 38 - man/readRespeaker6.Rd | 54 +- man/referenceIntensity.Rd | 34 - man/referencePressure.Rd | 36 - man/resonantFrequency.Rd | 50 - man/sDuration.Rd | 58 +- man/sheepFrequencyStats.Rd | 32 - man/shimmer.Rd | 46 - man/slash-PseudoWave-numeric-method.Rd | 34 - man/soundSpeed.Rd | 140 ++--- man/specStats.Rd | 50 - man/ste.Rd | 62 +- man/subtractSpectra.Rd | 58 +- man/sweptsine.Rd | 88 +-- man/tSamples.Rd | 58 +- man/tagWave.Rd | 40 - man/times-PseudoWave-numeric-method.Rd | 34 - man/times-numeric-PseudoWave-method.Rd | 34 - man/typicalVolume.Rd | 44 - man/upsample.Rd | 54 +- man/validateIsWave.Rd | 28 - man/windowing.Rd | 100 +-- man/yearlyLabels.Rd | 22 man/yearlyPositions.Rd | 40 - man/zeroSpectrum.Rd | 46 - man/zerocross.Rd | 46 - tests/spelling.R | 6 tests/testthat/Rplots.pdf |binary tests/testthat/test-WaveFilter.R | 204 +++---- tests/testthat/test-allChannels.R | 260 ++++----- tests/testthat/test-audioblast.R | 17 tests/testthat/test-birdnetReticulate.R | 72 +- tests/testthat/test-convertTime.R | 65 +- tests/testthat/test-generateTimeMasked.R | 66 +- tests/testthat/test-parseFilename.R | 298 +++++------ tests/testthat/test-soundSpeed.R | 70 +- tests/testthat/test-windowing.R | 276 +++++----- vignettes/audioblast.Rmd | 58 +- 175 files changed, 7743 insertions(+), 7701 deletions(-)
More information about sonicscrewdriver at CRAN
Permanent link
Title: Calculate Earth’s Obliquity and Precession in the Past
Description: Easily calculate precession and obliquity from an orbital solution (defaults to ZB18a from Zeebe and Lourens (2019) <doi:10.1126/science.aax0612>) and assumed or reconstructed values for tidal dissipation (Td) and dynamical ellipticity (Ed). This is a translation and adaptation of the C-code in the supplementary material to Zeebe and Lourens (2022) <doi:10.1029/2021PA004349>, with further details on the methodology described in Zeebe (2022) <doi:10.3847/1538-3881/ac80f8>. The name of the C-routine is snvec, which refers to the key units of computation: spin vector s and orbit normal vector n.
Author: Ilja Kocken [aut, cre, trl, cph]
,
Richard Zeebe [aut]
Maintainer: Ilja Kocken <ikocken@hawaii.edu>
Diff between snvecR versions 3.8.0 dated 2024-01-26 and 3.9.0 dated 2024-03-01
snvecR-3.8.0/snvecR/man/PT_ZB18a.Rd |only snvecR-3.8.0/snvecR/man/ZB18a-100.Rd |only snvecR-3.8.0/snvecR/man/ZB18a-300.Rd |only snvecR-3.9.0/snvecR/DESCRIPTION | 8 snvecR-3.9.0/snvecR/MD5 | 60 +-- snvecR-3.9.0/snvecR/NEWS.md | 6 snvecR-3.9.0/snvecR/R/data.R | 40 +- snvecR-3.9.0/snvecR/R/get_solution.R | 66 +-- snvecR-3.9.0/snvecR/R/globals.R | 3 snvecR-3.9.0/snvecR/R/prepare_solution.R | 7 snvecR-3.9.0/snvecR/R/snvec.R | 65 +-- snvecR-3.9.0/snvecR/README.md | 22 - snvecR-3.9.0/snvecR/build/partial.rdb |binary snvecR-3.9.0/snvecR/build/vignette.rds |binary snvecR-3.9.0/snvecR/inst/doc/analyze_grid_td-ed.R | 16 snvecR-3.9.0/snvecR/inst/doc/analyze_grid_td-ed.Rmd | 16 snvecR-3.9.0/snvecR/inst/doc/analyze_grid_td-ed.html | 182 ++++------ snvecR-3.9.0/snvecR/man/ZB17.Rd | 7 snvecR-3.9.0/snvecR/man/ZB18a_100.Rd |only snvecR-3.9.0/snvecR/man/ZB18a_300.Rd |only snvecR-3.9.0/snvecR/man/ZB20.Rd | 7 snvecR-3.9.0/snvecR/man/figures/README-plot-1.png |binary snvecR-3.9.0/snvecR/man/full_ZB18a.Rd |only snvecR-3.9.0/snvecR/man/get_solution.Rd | 12 snvecR-3.9.0/snvecR/man/prepare_solution.Rd | 7 snvecR-3.9.0/snvecR/man/snvec.Rd | 27 - snvecR-3.9.0/snvecR/tests/testthat/_snaps/get_solution.md | 74 ++-- snvecR-3.9.0/snvecR/tests/testthat/_snaps/snvec.md | 6 snvecR-3.9.0/snvecR/tests/testthat/test-get_solution.R | 16 snvecR-3.9.0/snvecR/tests/testthat/test-prepare_solution.R | 2 snvecR-3.9.0/snvecR/tests/testthat/test-snvec.R | 11 snvecR-3.9.0/snvecR/vignettes/analyze_grid_td-ed.Rmd | 16 snvecR-3.9.0/snvecR/vignettes/analyze_grid_td-ed_files/figure-html/plot-1.png |binary snvecR-3.9.0/snvecR/vignettes/analyze_grid_td-ed_files/figure-html/read-files-1.png |binary 34 files changed, 361 insertions(+), 315 deletions(-)
Title: Read some less Popular Formats Used in Meteorology
Description: Contains tools for reading and writing data from or to files in the formats: akterm, dmna, Scintec Format-1, and Campbell Scientific TOA5.
Author: Clemens Druee, Universitaet Trier
Maintainer: Clemens Druee <druee@uni-trier.de>
Diff between readmet versions 1.6.9 dated 2023-02-11 and 1.7.1 dated 2024-03-01
DESCRIPTION | 10 +++++----- MD5 | 7 +++++-- R/read.akterm.R |only inst/extdata/example-series.akterm |only man/read.akterm.Rd |only man/readmet-package.Rd | 2 ++ 6 files changed, 12 insertions(+), 7 deletions(-)
Title: Bayesian Vector Heterogeneous Autoregressive Modeling
Description: Tools to research Bayesian Vector heterogeneous autoregressive (VHAR) model,
referring to Kim & Baek (2023) (<doi:10.1080/00949655.2023.2281644>).
'bvhar' can model Vector Autoregressive (VAR), VHAR, Bayesian VAR (BVAR), and Bayesian VHAR (BVHAR) models.
Author: Young Geun Kim [aut, cre, cph]
,
Changryong Baek [ctb]
Maintainer: Young Geun Kim <ygeunkimstat@gmail.com>
Diff between bvhar versions 2.0.0 dated 2024-02-14 and 2.0.1 dated 2024-03-01
DESCRIPTION | 8 +-- MD5 | 80 +++++++++++++++++++-------------------- NEWS.md | 6 ++ README.md | 2 inst/doc/bvhar.html | 44 ++++++++++----------- inst/doc/empirical-bayes.html | 14 +++--- inst/doc/forecasting.html | 4 - inst/doc/shrinkage.html | 10 ++-- inst/include/bvharcommon.h | 6 +- inst/include/mcmcsv.h | 38 +++++++++++------- inst/include/minnesota.h | 4 - man/analyze_ir.Rd | 2 man/bound_bvhar.Rd | 2 man/bvar_flat.Rd | 2 man/bvar_horseshoe.Rd | 2 man/bvar_minnesota.Rd | 2 man/bvar_niwhm.Rd | 2 man/bvar_ssvs.Rd | 2 man/bvar_sv.Rd | 2 man/bvhar_horseshoe.Rd | 2 man/bvhar_minnesota.Rd | 2 man/bvhar_ssvs.Rd | 2 man/bvhar_sv.Rd | 2 man/choose_bvar.Rd | 2 man/figures/README-predfig-1.png |binary man/forecast_roll.Rd | 2 man/init_ssvs.Rd | 2 man/predict.varlse.Rd | 2 man/set_bvar.Rd | 2 man/set_horseshoe.Rd | 2 man/set_intercept.Rd | 2 man/set_lambda.Rd | 2 man/set_ssvs.Rd | 2 man/summary.normaliw.Rd | 2 man/summary.ssvsmod.Rd | 2 man/summary.varlse.Rd | 2 man/summary.vharlse.Rd | 2 man/var_lm.Rd | 2 man/vhar_lm.Rd | 2 src/forecast-bvar.cpp | 12 ++--- src/forecast-bvhar.cpp | 12 ++--- 41 files changed, 156 insertions(+), 138 deletions(-)
Title: Estimate and Manipulate Age-Depth Models
Description: Estimate age-depth models from stratigraphic and sedimentological data,
and transform data
between the time and stratigraphic domain.
Author: Niklas Hohmann [aut, cre]
Maintainer: Niklas Hohmann <N.H.Hohmann@uu.nl>
Diff between admtools versions 0.1.0 dated 2023-12-06 and 0.2.0 dated 2024-03-01
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Title: Statistical Tools for Toroidal Diffusions
Description: Implementation of statistical methods for the estimation of
toroidal diffusions. Several diffusive models are provided, most of them
belonging to the Langevin family of diffusions on the torus. Specifically,
the wrapped normal and von Mises processes are included, which can be seen
as toroidal analogues of the Ornstein-Uhlenbeck diffusion. A collection of
methods for approximate maximum likelihood estimation, organized in four
blocks, is given: (i) based on the exact transition probability density,
obtained as the numerical solution to the Fokker-Plank equation; (ii) based
on wrapped pseudo-likelihoods; (iii) based on specific analytic
approximations by wrapped processes; (iv) based on maximum likelihood of
the stationary densities. The package allows the replicability of the
results in García-Portugués et al. (2019) <doi:10.1007/s11222-017-9790-2>.
Author: Eduardo Garcia-Portugues [aut, cre]
Maintainer: Eduardo Garcia-Portugues <edgarcia@est-econ.uc3m.es>
Diff between sdetorus versions 0.1.9 dated 2023-08-20 and 0.1.10 dated 2024-03-01
DESCRIPTION | 10 +++--- MD5 | 16 +++++----- NAMESPACE | 2 - NEWS.md | 4 ++ R/auxiliary.R | 65 ++++++++++++++++++++++++++++++++++++++++-- R/pde.R | 2 - R/sdetorus-package.R | 2 - man/dTpdPde2D.Rd | 2 - man/matlab.like.colorRamps.Rd |only man/table.ramp.colorRamps.Rd |only 10 files changed, 85 insertions(+), 18 deletions(-)
Title: Data Analysis Part of 'IOHprofiler'
Description: The data analysis module for the Iterative Optimization Heuristics
Profiler ('IOHprofiler'). This module provides statistical analysis methods for the
benchmark data generated by optimization heuristics, which can be visualized through a
web-based interface. The benchmark data is usually generated by the
experimentation module, called 'IOHexperimenter'. 'IOHanalyzer' also supports
the widely used 'COCO' (Comparing Continuous Optimisers) data format for benchmarking.
Author: Hao Wang [aut] ,
Diederick Vermetten [cre, aut]
,
Carola Doerr [aut] ,
Thomas Baeck [aut]
Maintainer: Diederick Vermetten <d.l.vermetten@liacs.leidenuniv.nl>
Diff between IOHanalyzer versions 0.1.8.6 dated 2023-12-04 and 0.1.8.10 dated 2024-03-01
DESCRIPTION | 10 LICENSE | 4 MD5 | 234 NAMESPACE | 562 - R/DataSet.R | 2526 ++--- R/DataSetList.R | 4172 ++++---- R/IOHanalyzer-deprecated.R | 390 R/IOHanalyzer.R | 91 R/data.R | 34 R/plot.R | 500 - R/plotDataSetList.R | 4835 ++++++---- R/readFiles.R | 3075 +++--- R/runServer.R | 78 R/stats.R | 1223 +- README.md | 3 inst/extdata/ONE_PLUS_LAMDA_EA/IOHprofiler_f1_i1.info | 4 inst/extdata/ONE_PLUS_LAMDA_EA/data_f1/IOHprofiler_f1_DIM100_i1.dat | 944 - inst/extdata/ONE_PLUS_LAMDA_EA_ws/IOHprofiler_fbla_i1.info | 6 inst/extdata/ONE_PLUS_LAMDA_EA_ws/IOHprofiler_fblubb_i1.info | 6 inst/extdata/ONE_PLUS_LAMDA_EA_ws/data_fbla/IOHprofiler_fbla_DIM100_i1.dat | 944 - inst/extdata/ONE_PLUS_LAMDA_EA_ws/data_fblubb/IOHprofiler_fblubb_DIM100_i1.dat | 944 - inst/shiny-server/LICENSE.txt | 58 inst/shiny-server/global.R | 574 - inst/shiny-server/markdown/FV_PAR_SUMMARY_TABLE.Rmd | 18 inst/shiny-server/markdown/INSTALL.Rmd | 78 inst/shiny-server/markdown/PAR_SUMMARY_TABLE.Rmd | 18 inst/shiny-server/markdown/RT_OVERVIEW_TABLE.Rmd | 20 inst/shiny-server/markdown/RT_SUMMARY_TABLE.Rmd | 18 inst/shiny-server/markdown/Report/ECDF_AUC.Rmd | 80 inst/shiny-server/markdown/Report/ECDF_Aggregated.Rmd | 54 inst/shiny-server/markdown/Report/ECDF_Single_Function.Rmd | 80 inst/shiny-server/markdown/Report/ECDF_Single_Target.Rmd | 62 inst/shiny-server/markdown/Report/FV_ECDF_AUC.Rmd | 80 inst/shiny-server/markdown/Report/FV_ECDF_Single_Function.Rmd | 84 inst/shiny-server/markdown/Report/FV_ECDF_Single_Target.Rmd | 64 inst/shiny-server/markdown/Report/FV_Histogram.Rmd | 64 inst/shiny-server/markdown/Report/FV_PMF.Rmd | 64 inst/shiny-server/markdown/Report/FV_Rank.Rmd | 44 inst/shiny-server/markdown/Report/Multi_ERT.Rmd | 44 inst/shiny-server/markdown/Report/Multi_FCE.Rmd | 42 inst/shiny-server/markdown/Report/Param_plot.Rmd | 78 inst/shiny-server/markdown/Report/RT_Histogram.Rmd | 64 inst/shiny-server/markdown/Report/RT_PMF.Rmd | 64 inst/shiny-server/markdown/Report/RT_Rank.Rmd | 46 inst/shiny-server/markdown/Report/Single_ERT.Rmd | 80 inst/shiny-server/markdown/Report/Single_FCE.Rmd | 70 inst/shiny-server/markdown/Report/Template_test.Rmd | 930 - inst/shiny-server/markdown/Report/bibliography.bib | 20 inst/shiny-server/markdown/TAR_SUMMARY_TABLE.Rmd | 14 inst/shiny-server/markdown/about.md | 194 inst/shiny-server/markdown/dataformat.md | 210 inst/shiny-server/markdown/docs.Rmd | 52 inst/shiny-server/markdown/quantile.Rmd | 18 inst/shiny-server/markdown/welcome.md | 90 inst/shiny-server/server.R | 144 inst/shiny-server/server/EAF_plots.R | 560 - inst/shiny-server/server/ERT_aggr_dim_plot.R | 266 inst/shiny-server/server/ERT_summary.R | 272 inst/shiny-server/server/FCEPDF.R | 224 inst/shiny-server/server/FCESummary.R | 256 inst/shiny-server/server/FCE_ECDF.R | 264 inst/shiny-server/server/FV_DSCinterface.R | 448 inst/shiny-server/server/RTPMF.R | 226 inst/shiny-server/server/RT_DSCinterface.R | 446 inst/shiny-server/server/RT_Par.R | 360 inst/shiny-server/server/Shapley_computations.R | 244 inst/shiny-server/server/fv_stat_tests.R | 320 inst/shiny-server/server/general_overview.R | 122 inst/shiny-server/server/ng_heatmap.R | 266 inst/shiny-server/server/ontology.R | 376 inst/shiny-server/server/report_generation.R | 78 inst/shiny-server/server/statistical_significance.R | 318 inst/shiny-server/server/tables_multi_func.R | 204 inst/shiny-server/theme.R | 200 inst/shiny-server/ui.R | 1348 +- inst/shiny-server/ui/DSC_interface.R | 560 - inst/shiny-server/ui/EAF_boxes.R | 778 - inst/shiny-server/ui/Parrallel_coord_box.R | 66 inst/shiny-server/ui/fv_CDP_box.R | 324 inst/shiny-server/ui/fv_ecdf_box.R | 282 inst/shiny-server/ui/fv_par_box.R | 386 inst/shiny-server/ui/fv_stats_box.R | 234 inst/shiny-server/ui/fv_summary_box.R | 176 inst/shiny-server/ui/ng_heatmap_box.R | 136 inst/shiny-server/ui/overview_box.R | 72 inst/shiny-server/ui/report_generation_box.R | 236 inst/shiny-server/ui/rt_par_box.R | 268 inst/shiny-server/ui/rt_summary_box.R | 184 inst/shiny-server/ui/settings.R | 230 inst/shiny-server/ui/sidebar_menu.R | 126 inst/shiny-server/ui/stats_box.R | 250 inst/shiny-server/ui/tables_multi_func_box.R | 206 inst/shiny-server/ui/upload_box.R | 840 - inst/shiny-server/ui/variable.R | 74 man/Plot.Comparison.Heatmap.Rd | 54 man/Plot.cumulative_difference_plot.Rd | 94 man/SP.Rd | 48 man/generate_data.CDP.Rd | 84 man/generate_data.EAF.Rd | 72 man/generate_data.EAF_Difference.Rd | 38 man/generate_data.EAF_diff_Approximate.Rd | 78 man/generate_data.ECDF_From_EAF.Rd | 70 man/generate_data.Heatmaps.Rd | 56 man/generate_data.Parameter_correlation.Rd | 42 man/get_FV.Rd | 54 man/get_RT.Rd | 54 man/get_ontology_data.Rd | 98 man/get_ontology_var.Rd | 58 man/get_position_dsl.Rd | 38 man/plot_eaf_data.Rd | 154 man/plot_eaf_differences.Rd | 72 man/read_IOH_v1plus.Rd | 40 man/read_pure_csv.Rd | 92 tests/testthat.R | 16 tests/testthat/test_DataSetList.R | 94 tests/testthat/test_DataSetList_named_with_strings.R | 124 tests/testthat/test_data_generation.R | 232 tests/testthat/test_diagram_examples_with_string_names.R | 72 118 files changed, 20229 insertions(+), 18036 deletions(-)
Title: Balanced and Spatially Balanced Sampling
Description: Select balanced and spatially balanced probability samples in multi-dimensional spaces
with any prescribed inclusion probabilities. It contains fast (C++ via Rcpp) implementations of
the included sampling methods. The local pivotal method by Grafström, Lundström and Schelin (2012)
<doi:10.1111/j.1541-0420.2011.01699.x> and spatially correlated Poisson sampling by Grafström (2012)
<doi:10.1016/j.jspi.2011.07.003> are included. Also the cube method (for balanced sampling) and
the local cube method (for doubly balanced sampling) are included, see Grafström and Tillé (2013)
<doi:10.1002/env.2194>.
Author: Anton Grafstroem, Jonathan Lisic, Wilmer Prentius
Maintainer: Anton Grafstroem <anton.grafstrom@gmail.com>
Diff between BalancedSampling versions 2.0.5 dated 2024-02-23 and 2.0.6 dated 2024-03-01
DESCRIPTION | 8 MD5 | 27 +-- src/CubeClass.cc | 22 +- src/CubeStratifiedClass.cc | 386 ++++++++++++++++++------------------------- src/CubeStratifiedClass.h | 98 +++++----- src/CubeVectorInNullSpace.cc |only src/CubeVectorInNullSpace.h |only src/IndexListClass.cc | 33 +++ src/IndexListClass.h | 3 src/KDTreeClass.cc | 118 +++++++++---- src/KDTreeClass.h | 2 src/ReducedRowEchelonForm.cc | 34 +-- src/ReducedRowEchelonForm.h | 5 src/cube_stratified.cc | 4 src/utils-matrix.h |only src/utils.h | 19 -- 16 files changed, 390 insertions(+), 369 deletions(-)
More information about BalancedSampling at CRAN
Permanent link
Title: Parse xlsx Files
Description: Uses C++ via the 'Rcpp' package to parse modern Excel files ('.xlsx').
Memory usage is kept minimal by decompressing only parts of the file at a time,
while employing multiple threads to achieve significant runtime reduction.
Uses <https://github.com/richgel999/miniz> and <https://github.com/lemire/fast_double_parser>.
Author: Felix Henze [aut, cre],
Rich Geldreich [ctb, cph] ,
Daniel Lemire [ctb, cph]
Maintainer: Felix Henze <felixhenze0@gmail.com>
Diff between SheetReader versions 1.1.0 dated 2023-05-09 and 1.2.0 dated 2024-03-01
DESCRIPTION | 8 - MD5 | 24 +-- R/RcppExports.R | 4 inst/extdata/escaped-unicode.xlsx |only inst/extdata/multi-test.xlsx |binary man/read_xlsx.Rd | 109 +++++++------ src/RcppExports.cpp | 9 - src/XlsxFile.cpp | 103 +++++++++++-- src/XlsxFile.h | 11 - src/XlsxSheet.cpp | 297 +++++++++++++++++++++++++++++++------- src/XlsxSheet.h | 45 +++++ src/interface.cpp | 79 ++++++---- tests/coerce.R |only tests/encoding.R | 6 14 files changed, 522 insertions(+), 173 deletions(-)
Title: Pedigree Inference from SNPs
Description: Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.
Author: Jisca Huisman [aut, cre]
Maintainer: Jisca Huisman <jisca.huisman@gmail.com>
Diff between sequoia versions 2.8.3 dated 2023-12-19 and 2.9.0 dated 2024-03-01
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Title: Causal Batch Effects
Description: Software which provides numerous functionalities for detecting and removing group-level effects from high-dimensional scientific data which, when combined with additional assumptions, allow for causal conclusions, as-described in our manuscripts Bridgeford et al. (2024) <doi:10.1101/2021.09.03.458920> and Bridgeford et al. (2023) <arXiv:2307.13868>. Also provides a number of useful utilities for generating simulations and balancing covariates across multiple groups/batches of data via matching and propensity trimming for more than two groups.
Author: Eric W. Bridgeford [aut, cre],
Michael Powell [ctb],
Brian Caffo [ctb],
Joshua T. Vogelstein [ctb]
Maintainer: Eric W. Bridgeford <ericwb95@gmail.com>
Diff between causalBatch versions 1.1 dated 2024-02-12 and 1.2.0 dated 2024-03-01
DESCRIPTION | 8 +- MD5 | 12 ++-- inst/doc/causal_balancing.html | 10 +-- inst/doc/causal_ccombat.html | 10 +-- inst/doc/causal_cdcorr.html | 6 +- inst/doc/causal_simulations.html | 28 +++++----- tests/testthat/test-causal_cdcorr.R | 99 ++++++++++++++++++------------------ 7 files changed, 89 insertions(+), 84 deletions(-)
Title: Calibration Performance
Description: Plots calibration curves and computes statistics for assessing calibration performance. See De Cock Campo (2023) <arXiv:2309.08559> and Van Calster et al. (2016) <doi:10.1016/j.jclinepi.2015.12.005>.
Author: De Cock Bavo [aut, cre],
Nieboer Daan [aut],
Van Calster Ben [aut],
Steyerberg Ewout [aut],
Vergouwe Yvonne [aut]
Maintainer: De Cock Bavo <bavo.decock@kuleuven.be>
Diff between CalibrationCurves versions 2.0.0 dated 2023-09-20 and 2.0.1 dated 2024-03-01
DESCRIPTION | 7 +++---- MD5 | 12 ++++++------ R/val.prob.ci.2.R | 4 ++-- R/valProbggplot.R | 10 ++++++---- README.md | 2 +- inst/CITATION | 4 ++-- inst/doc/CalibrationCurves.html | 4 ++-- 7 files changed, 22 insertions(+), 21 deletions(-)
More information about CalibrationCurves at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-09 3.0.8
2017-04-17 3.0.7
Title: Wavelet Scalogram Tools for Time Series Analysis
Description: Provides scalogram based wavelet tools for time series analysis: wavelet power spectrum, scalogram, windowed scalogram, windowed scalogram difference (see Bolos et al. (2017) <doi:10.1016/j.amc.2017.05.046>), scale index and windowed scale index (Benitez et al. (2010) <doi:10.1016/j.camwa.2010.05.010>).
Author: Vicente J. Bolos and Rafael Benitez
Maintainer: Vicente J. Bolos <vicente.bolos@uv.es>
Diff between wavScalogram versions 1.1.2 dated 2022-12-12 and 1.1.3 dated 2024-03-01
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 1 - R/cwt_wst.R | 4 ++-- R/wavPlot.R | 11 +++++++++-- R/windowed_scale_index.R | 2 -- man/cwt_wst.Rd | 4 ++-- 7 files changed, 24 insertions(+), 20 deletions(-)
Title: Basic Linear Algebra with GPU
Description: GPUs are great resources for data analysis, especially in statistics and linear algebra. Unfortunately, very few packages connect R to the GPU, and none of them are transparent enough to run the computations on the GPU without substantial changes to the code. The maintenance of these packages is cumbersome: several of the earlier attempts have been removed from their respective repositories. It would be desirable to have a properly maintained R package that takes advantage of the GPU with minimal changes to the existing code. We have developed the GPUmatrix package (available on CRAN). GPUmatrix mimics the behavior of the Matrix package and extends R to use the GPU for computations. It includes single(FP32) and double(FP64) precision data types, and provides support for sparse matrices. It is easy to learn, and requires very few code changes to perform the operations on the GPU. GPUmatrix relies on either the Torch or Tensorflow R packages to perform the GPU operations. We have demonst [...truncated...]
Author: Cesar Lobato-Fernandez [aut, cre],
Juan A.Ferrer-Bonsoms [aut],
Angel Rubio [aut, ctb]
Maintainer: Cesar Lobato-Fernandez <clobatofern@unav.es>
Diff between GPUmatrix versions 1.0.1 dated 2023-12-01 and 1.0.2 dated 2024-03-01
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Title: Side Grammar Graphics
Description: The grammar of graphics as shown in 'ggplot2' has provided
an expressive API for users to build plots. 'ggside' extends 'ggplot2'
by allowing users to add graphical information about one of the main panel's
axis using a familiar 'ggplot2' style API with tidy data. This package is
particularly useful for visualizing metadata on a discrete axis, or summary
graphics on a continuous axis such as a boxplot or a density distribution.
Author: Justin Landis [aut, cre]
Maintainer: Justin Landis <jtlandis314@gmail.com>
Diff between ggside versions 0.3.0 dated 2024-02-25 and 0.3.1 dated 2024-03-01
DESCRIPTION | 6 ++-- MD5 | 19 +++++++++------ NEWS.md | 9 ++++++- R/scales-sides-.R | 21 +++++++++++++---- R/side-layout-.r | 6 ++-- R/utils-calls.R | 4 ++- tests/testthat/_snaps/ops_meaningful |only tests/testthat/test_add_gg.R | 19 ++++++++++++++- tests/testthat/test_continuous_date_axis.R | 35 +++++++++++++++++++++-------- tests/testthat/test_ggside_scales.R | 30 ++++++++++++++++-------- tests/testthat/test_ops_meaningful.R |only 11 files changed, 107 insertions(+), 42 deletions(-)
Title: Small-Area-Estimation Unit/Area Models and Methods for
Estimation in R
Description: Provides methods for spatial and spatio-temporal smoothing of demographic and health indicators using survey data, with particular focus on estimating and projecting under-five mortality rates, described in Mercer et al. (2015) <doi:10.1214/15-AOAS872>, Li et al. (2019) <doi:10.1371/journal.pone.0210645>, Wu et al. (DHS Spatial Analysis Reports No. 21, 2021), and Li et al. (2023) <arXiv:2007.05117>.
Author: Zehang R Li [cre, aut],
Bryan D Martin [aut],
Yuan Hsiao [aut],
Jessica Godwin [aut],
John Paige [aut],
Peter Gao [aut],
Jon Wakefield [aut],
Samuel J Clark [aut],
Geir-Arne Fuglstad [aut],
Andrea Riebler [aut]
Maintainer: Zehang R Li <lizehang@gmail.com>
Diff between SUMMER versions 1.3.0 dated 2022-07-08 and 1.4.0 dated 2024-03-01
SUMMER-1.3.0/SUMMER/inst/doc/summer-vignette.html |only SUMMER-1.3.0/SUMMER/inst/doc/summer-vignette.html.asis |only SUMMER-1.3.0/SUMMER/inst/doc/u5mr-vignette2.html |only SUMMER-1.3.0/SUMMER/inst/doc/u5mr-vignette2.html.asis |only SUMMER-1.3.0/SUMMER/vignettes/summer-vignette.html.asis |only SUMMER-1.3.0/SUMMER/vignettes/u5mr-vignette2.html.asis |only SUMMER-1.4.0/SUMMER/DESCRIPTION | 22 SUMMER-1.4.0/SUMMER/MD5 | 107 SUMMER-1.4.0/SUMMER/NAMESPACE | 47 SUMMER-1.4.0/SUMMER/NEWS.md | 12 SUMMER-1.4.0/SUMMER/R/benchmark.R |only SUMMER-1.4.0/SUMMER/R/check_global.R |only SUMMER-1.4.0/SUMMER/R/countrySummary.R | 8 SUMMER-1.4.0/SUMMER/R/fitINLA.R | 47 SUMMER-1.4.0/SUMMER/R/fitINLA2.R | 95 SUMMER-1.4.0/SUMMER/R/fitspace.R | 218 + SUMMER-1.4.0/SUMMER/R/getAmat.R | 2 SUMMER-1.4.0/SUMMER/R/getAreaName.R |only SUMMER-1.4.0/SUMMER/R/getBirths.R | 17 SUMMER-1.4.0/SUMMER/R/getDiag.R | 14 SUMMER-1.4.0/SUMMER/R/getSmoothedDensity.R | 8 SUMMER-1.4.0/SUMMER/R/hatchPlot.R | 5 SUMMER-1.4.0/SUMMER/R/kenyaPopulationData.R |only SUMMER-1.4.0/SUMMER/R/logitNormMean.R |only SUMMER-1.4.0/SUMMER/R/mapPlot.R | 65 SUMMER-1.4.0/SUMMER/R/plot_projINLA.R | 7 SUMMER-1.4.0/SUMMER/R/popGrid.R |only SUMMER-1.4.0/SUMMER/R/projINLA.R | 1567 ++++++++------ SUMMER-1.4.0/SUMMER/R/projKenya.R |only SUMMER-1.4.0/SUMMER/R/simPop.R |only SUMMER-1.4.0/SUMMER/R/simSPDE.R |only SUMMER-1.4.0/SUMMER/R/smoothArea.R | 642 ++++- SUMMER-1.4.0/SUMMER/R/smoothUnit.R | 222 + SUMMER-1.4.0/SUMMER/R/summary.R | 66 SUMMER-1.4.0/SUMMER/README.md | 64 SUMMER-1.4.0/SUMMER/build/vignette.rds |binary SUMMER-1.4.0/SUMMER/data/kenyaPopulationData.rda |only SUMMER-1.4.0/SUMMER/inst/doc/small-area-estimation.html | 1311 +++++------ SUMMER-1.4.0/SUMMER/inst/doc/u5mr-dhs-vignette.html |only SUMMER-1.4.0/SUMMER/inst/doc/u5mr-dhs-vignette.html.asis |only SUMMER-1.4.0/SUMMER/inst/doc/u5mr-vignette.html | 1040 ++++++--- SUMMER-1.4.0/SUMMER/inst/doc/u5mr-vignette.html.asis | 4 SUMMER-1.4.0/SUMMER/man/Benchmark.Rd |only SUMMER-1.4.0/SUMMER/man/aggPixelPreds.Rd |only SUMMER-1.4.0/SUMMER/man/aggPop.Rd |only SUMMER-1.4.0/SUMMER/man/calibrateByRegion.Rd |only SUMMER-1.4.0/SUMMER/man/compareEstimates.Rd |only SUMMER-1.4.0/SUMMER/man/figures |only SUMMER-1.4.0/SUMMER/man/getAreaName.Rd |only SUMMER-1.4.0/SUMMER/man/getBirths.Rd | 4 SUMMER-1.4.0/SUMMER/man/getDiag.Rd | 5 SUMMER-1.4.0/SUMMER/man/getDirect.Rd | 5 SUMMER-1.4.0/SUMMER/man/getSmoothed.Rd | 74 SUMMER-1.4.0/SUMMER/man/kenyaPopulationData.Rd |only SUMMER-1.4.0/SUMMER/man/logitNormMean.Rd |only SUMMER-1.4.0/SUMMER/man/makePopIntegrationTab.Rd |only SUMMER-1.4.0/SUMMER/man/mapEstimates.Rd |only SUMMER-1.4.0/SUMMER/man/plot.SUMMERproj.Rd | 8 SUMMER-1.4.0/SUMMER/man/poppRegionFromPopMat.Rd |only SUMMER-1.4.0/SUMMER/man/projKenya.Rd |only SUMMER-1.4.0/SUMMER/man/ridgePlot.Rd | 4 SUMMER-1.4.0/SUMMER/man/setThresholdsByRegion.Rd |only SUMMER-1.4.0/SUMMER/man/simPop.Rd |only SUMMER-1.4.0/SUMMER/man/simPopInternal.Rd |only SUMMER-1.4.0/SUMMER/man/simSPDE.Rd |only SUMMER-1.4.0/SUMMER/man/smoothArea.Rd | 107 SUMMER-1.4.0/SUMMER/man/smoothCluster.Rd | 20 SUMMER-1.4.0/SUMMER/man/smoothDirect.Rd | 17 SUMMER-1.4.0/SUMMER/man/smoothSurvey.Rd | 36 SUMMER-1.4.0/SUMMER/man/smoothUnit.Rd | 55 SUMMER-1.4.0/SUMMER/man/summary.SUMMERprojlist.Rd |only SUMMER-1.4.0/SUMMER/vignettes/u5mr-dhs-vignette.html.asis |only SUMMER-1.4.0/SUMMER/vignettes/u5mr-vignette.html.asis | 4 73 files changed, 3773 insertions(+), 2156 deletions(-)
Title: Mobile Ready 'shiny' Apps with Standalone Capabilities
Description: Develop outstanding 'shiny' apps for 'iOS', 'Android', desktop as well as beautiful 'shiny' gadgets.
'shinyMobile' is built on top of the latest 'Framework7' template <https://framework7.io>.
Discover 14 new input widgets (sliders, vertical sliders, stepper,
grouped action buttons, toggles, picker, smart select, ...), 2 themes (light and dark),
12 new widgets (expandable cards, badges, chips, timelines, gauges, progress bars, ...)
combined with the power of server-side notifications such as alerts, modals, toasts,
action sheets, sheets (and more) as well as 3 layouts (single, tabs and split).
Author: David Granjon [aut, cre],
Victor Perrier [aut],
John Coene [ctb],
Isabelle Rudolf [aut],
Dieter Menne [ctb],
Marvelapp [ctb, cph] ,
Vladimir Kharlampidi [ctb, cph]
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between shinyMobile versions 1.0.0 dated 2022-11-25 and 1.0.1 dated 2024-03-01
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Title: Data Validation and Organization of Metadata for Local and
Remote Tables
Description: Validate data in data frames, 'tibble' objects, 'Spark'
'DataFrames', and database tables. Validation pipelines can be made using
easily-readable, consecutive validation steps. Upon execution of the
validation plan, several reporting options are available. User-defined
thresholds for failure rates allow for the determination of appropriate
reporting actions. Many other workflows are available including an
information management workflow, where the aim is to record, collect, and
generate useful information on data tables.
Author: Richard Iannone [aut, cre] ,
Mauricio Vargas [aut] ,
June Choe [aut]
Maintainer: Richard Iannone <rich@posit.co>
Diff between pointblank versions 0.11.4 dated 2023-04-25 and 0.12.0 dated 2024-03-01
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Title: Addons for the 'mclust' Package
Description: Extend the functionality of the 'mclust' package for
Gaussian finite mixture modeling by including:
density estimation for data with bounded support
(Scrucca, 2019 <doi:10.1002/bimj.201800174>);
modal clustering using MEM (Modal EM) algorithm for Gaussian mixtures
(Scrucca, 2021 <doi:10.1002/sam.11527>);
entropy estimation via Gaussian mixture modeling
(Robin & Scrucca, 2023 <doi:10.1016/j.csda.2022.107582>).
Author: Luca Scrucca [aut, cre]
Maintainer: Luca Scrucca <luca.scrucca@unipg.it>
Diff between mclustAddons versions 0.7.2 dated 2023-01-06 and 0.8 dated 2024-03-01
mclustAddons-0.7.2/mclustAddons/man/logsumexp.Rd |only mclustAddons-0.8/mclustAddons/DESCRIPTION | 10 mclustAddons-0.8/mclustAddons/MD5 | 32 mclustAddons-0.8/mclustAddons/NAMESPACE | 4 mclustAddons-0.8/mclustAddons/NEWS.md | 22 mclustAddons-0.8/mclustAddons/R/ModalEM.R | 7 mclustAddons-0.8/mclustAddons/R/densityMclustBounded.R | 374 ++------ mclustAddons-0.8/mclustAddons/R/util.R | 39 mclustAddons-0.8/mclustAddons/README.md | 5 mclustAddons-0.8/mclustAddons/build/vignette.rds |binary mclustAddons-0.8/mclustAddons/inst/doc/mclustAddons.R | 4 mclustAddons-0.8/mclustAddons/inst/doc/mclustAddons.Rmd | 4 mclustAddons-0.8/mclustAddons/inst/doc/mclustAddons.html | 604 +++++++------- mclustAddons-0.8/mclustAddons/man/MclustMEM.Rd | 4 mclustAddons-0.8/mclustAddons/man/densityMclustBounded.Rd | 9 mclustAddons-0.8/mclustAddons/man/rangepowerTransform.Rd |only mclustAddons-0.8/mclustAddons/src/Makevars | 4 mclustAddons-0.8/mclustAddons/vignettes/mclustAddons.Rmd | 4 18 files changed, 482 insertions(+), 644 deletions(-)
Title: Cryptographic Hash and Extendable-Output Functions
Description: SHA-256, SHA-3 cryptographic hash and SHAKE256 extendable-output
functions (XOF). The SHA-3 Secure Hash Standard was published by the
National Institute of Standards and Technology (NIST) in 2015 at
<doi:10.6028/NIST.FIPS.202>. The SHA-256 Secure Hash Standard was published
by NIST in 2002 at
<https://csrc.nist.gov/publications/fips/fips180-2/fips180-2.pdf>. Fast and
memory-efficient implementation using the core algorithms from 'Mbed TLS'
under the Trusted Firmware Project
<https://www.trustedfirmware.org/projects/mbed-tls/>.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between secretbase versions 0.3.0 dated 2024-02-21 and 0.3.0.1 dated 2024-03-01
DESCRIPTION | 6 MD5 | 11 - NEWS.md | 4 README.md | 13 - src/secret.c | 391 +--------------------------------------------------------- src/secret.h | 15 +- src/secret2.c |only 7 files changed, 35 insertions(+), 405 deletions(-)
Title: Data Utilities for Congressional Research
Description: Provides easy-to-understand and consistent interfaces for accessing data on the U.S. Congress.
The functions in 'filibustr' streamline the process for importing data on Congress into R,
removing the need to download and work from CSV files and the like.
Data sources include 'Voteview' (<https://voteview.com/>), the U.S. Senate website (<https://www.senate.gov/>), and more.
Author: Max Feinleib [aut, cre, cph]
Maintainer: Max Feinleib <mhfeinleib@gmail.com>
Diff between filibustr versions 0.1.1 dated 2024-02-13 and 0.2.0 dated 2024-03-01
filibustr-0.1.1/filibustr/R/get_lhy_data.R |only filibustr-0.1.1/filibustr/man/get_lhy_data.Rd |only filibustr-0.1.1/filibustr/tests/testthat/test-get_lhy_data.R |only filibustr-0.2.0/filibustr/DESCRIPTION | 8 filibustr-0.2.0/filibustr/MD5 | 41 +- filibustr-0.2.0/filibustr/NAMESPACE | 3 filibustr-0.2.0/filibustr/NEWS.md | 15 filibustr-0.2.0/filibustr/R/build_file_path.R |only filibustr-0.2.0/filibustr/R/get_hvw_data.R |only filibustr-0.2.0/filibustr/R/get_les.R |only filibustr-0.2.0/filibustr/R/get_voteview_member_votes.R | 9 filibustr-0.2.0/filibustr/R/get_voteview_members.R | 17 - filibustr-0.2.0/filibustr/R/get_voteview_parties.R | 7 filibustr-0.2.0/filibustr/R/get_voteview_rollcall_votes.R | 9 filibustr-0.2.0/filibustr/R/utils.R | 77 ---- filibustr-0.2.0/filibustr/README.md | 165 +++++++--- filibustr-0.2.0/filibustr/man/get_hvw_data.Rd |only filibustr-0.2.0/filibustr/man/get_les.Rd |only filibustr-0.2.0/filibustr/man/get_voteview_member_votes.Rd | 16 filibustr-0.2.0/filibustr/man/get_voteview_members.Rd | 16 filibustr-0.2.0/filibustr/man/get_voteview_parties.Rd | 16 filibustr-0.2.0/filibustr/man/get_voteview_rollcall_votes.Rd | 16 filibustr-0.2.0/filibustr/tests/testthat/test-build_file_path.R |only filibustr-0.2.0/filibustr/tests/testthat/test-get_hvw_data.R |only filibustr-0.2.0/filibustr/tests/testthat/test-get_les.R |only filibustr-0.2.0/filibustr/tests/testthat/test-get_voteview_members.R | 4 filibustr-0.2.0/filibustr/tests/testthat/test-utils.R | 83 +---- 27 files changed, 239 insertions(+), 263 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-05 1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-17 3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-30 0.0-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-05 1.1.1
2022-06-10 1.0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-14 2.0-10
2018-03-31 0.0-6
2014-02-20 0.0-5
2011-11-04 0.0-4
2009-11-04 0.0-3
2006-09-12 0.0-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-30 2.1.3