Title: Interactive Analysis of UCSC Xena Data
Description: Provides functions and a Shiny application for downloading,
analyzing and visualizing datasets from UCSC Xena
(<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public
databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Author: Shixiang Wang [aut, cre] ,
Shensuo Li [aut],
Yi Xiong [aut] ,
Longfei Zhao [aut] ,
Kai Gu [aut] ,
Yin Li [aut],
Fei Zhao [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaShiny versions 1.1.10 dated 2023-02-28 and 2.0.0 dated 2024-03-13
UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/extdata/ccle_drug_response_extend.rda |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/combo-single-gene-pan-cancer-analysis.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/home-pancan-search.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-ccle-gene-drug-respose-df.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-ccle-gene-drug-target.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-ccle-genecor.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-ccle-search.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-file-upload.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-ga-group-comparison.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-ga-matrix-correlation.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-ga-scatter-correlation.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-ga-surv-analysis.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-pancan-anatomy.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-pancan-genecor.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-pancan-immune.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-pancan-radar.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-pancan-search-cancer.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-pancan-search.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-pancan-til.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-pancan-unicox.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-pcawg-genecor.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-pcawg-search.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-pcawg-survival-analysis.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-pcawg-unicox.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/modules/modules-survival-analysis.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/inst/shinyapp/ui/pancan-analysis.R |only UCSCXenaShiny-1.1.10/UCSCXenaShiny/man/UCSCXenaShiny.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/DESCRIPTION | 64 - UCSCXenaShiny-2.0.0/UCSCXenaShiny/MD5 | 267 ++++-- UCSCXenaShiny-2.0.0/UCSCXenaShiny/NAMESPACE | 8 UCSCXenaShiny-2.0.0/UCSCXenaShiny/NEWS.md | 78 ++ UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/ccle.R | 22 UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/data.R | 35 UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/get_pancan_value.R | 181 +++- UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/get_pcawg_value.R | 10 UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/globalVariables.R | 4 UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/load_data.R | 23 UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/query_general.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/query_tcga_group.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/query_value.R | 121 ++- UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/tcga_surv.R | 11 UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/utils.R | 5 UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/vis_ccle_value.R | 18 UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/vis_dim_dist.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/vis_gene_pw_cor.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/vis_identifier_dim_dist.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/vis_pancan_value.R | 172 ++-- UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/vis_pcawg_value.R | 29 UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/vis_toil_Mut.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/R/xenashiny.R | 11 UCSCXenaShiny-2.0.0/UCSCXenaShiny/README.md | 42 - UCSCXenaShiny-2.0.0/UCSCXenaShiny/build/vignette.rds |binary UCSCXenaShiny-2.0.0/UCSCXenaShiny/data/ccle_info_fine.rda |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/data/pcawg_info_fine.rda |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/data/tcga_clinical_fine.rda |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/doc/api.R | 2 UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/doc/api.Rmd | 5 UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/doc/api.html | 38 UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/rmd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/App.R | 191 ++-- UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/PGdata.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/appdata.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/helper |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/modules/PharmacoGenomics |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/modules/ccle |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/modules/general |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/modules/other_page |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/modules/pcawg |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/modules/quick |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/modules/tcga |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/modules/tpc_func |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/server/general-analysis.R | 49 - UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/server/home.R | 186 ++-- UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/server/modules.R | 201 ++++- UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/server/repository.R | 2 UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/shiny-doc/citation2.md |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/shiny-doc/datasets.md | 2 UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/shiny-doc/tmp.md |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/ui/PharmacoGenomics.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/ui/developers.R | 44 + UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/ui/footer.R | 2 UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/ui/general-analysis.R | 6 UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/ui/help.R | 55 - UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/ui/home.R | 388 ++++++---- UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/ui/pancan-analysis-ccle.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/ui/pancan-analysis-pcawg.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/ui/pancan-analysis-quick.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/ui/pancan-analysis-tcga.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/ui/pancan-download.R |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/ui/repository.R | 2 UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/www/20210708184045.png |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/inst/shinyapp/www/slick_img |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/UCSCXenaShiny-package.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/ccle_info_fine.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/dot-opt_pancan.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/get_pancan_value.Rd | 71 + UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/load_data.Rd | 10 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/mol_quick_analysis.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/pcawg_info_fine.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/query_general_value.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/query_pancan_value.Rd | 82 +- UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/query_tcga_group.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/tcga_clinical_fine.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/tcga_surv_analysis.Rd | 13 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_ccle_gene_cor.Rd | 5 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_ccle_tpm.Rd | 9 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_dim_dist.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_gene_TIL_cor.Rd | 8 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_gene_cor.Rd | 5 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_gene_cor_cancer.Rd | 5 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_gene_immune_cor.Rd | 8 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_gene_msi_cor.Rd | 8 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_gene_pw_cor.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_gene_stemness_cor.Rd | 8 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_gene_tmb_cor.Rd | 8 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_identifier_dim_dist.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_identifier_grp_comparison.Rd | 11 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_identifier_multi_cor.Rd | 2 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_pancan_anatomy.Rd | 22 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_pcawg_dist.Rd | 8 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_pcawg_gene_cor.Rd | 5 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_pcawg_unicox_tree.Rd | 7 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_toil_Mut.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_toil_Mut_cancer.Rd |only UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_toil_TvsN.Rd | 8 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_toil_TvsN_cancer.Rd | 8 UCSCXenaShiny-2.0.0/UCSCXenaShiny/man/vis_unicox_tree.Rd | 7 UCSCXenaShiny-2.0.0/UCSCXenaShiny/vignettes/api.Rmd | 5 128 files changed, 1776 insertions(+), 821 deletions(-)
Title: A Pharmacometrics Data Transformation and Analysis Tool
Description: Exploration of pharmacometrics data involves both general tools (transformation and plotting) and specific techniques (non-compartmental analysis). This kind of exploration is generally accomplished by utilizing different packages. The purpose of 'ruminate' is to create a 'shiny' interface to make these tools more broadly available while creating reproducible results.
Author: John Harrold [aut, cre]
Maintainer: John Harrold <john.m.harrold@gmail.com>
Diff between ruminate versions 0.2.1 dated 2023-12-11 and 0.2.2 dated 2024-03-13
DESCRIPTION | 18 - MD5 | 38 ++- NAMESPACE | 3 NEWS.md | 7 R/NCA_Server.R | 2 R/ruminate.R | 63 ++++-- R/simulate_rules.R |only README.md | 14 + inst/doc/deployment.R | 6 inst/doc/noncompartmental_analysis.R | 1 inst/doc/noncompartmental_analysis.Rmd | 1 inst/doc/noncompartmental_analysis.html | 293 ++++++------------------------ inst/templates/NCA.yaml | 6 inst/templates/ruminate.R | 34 --- inst/templates/ruminate_devel.R |only inst/test_apps/nca_app.R | 34 --- inst/test_apps/simulate_rules_ext_funcs.R |only inst/test_apps/simulate_rules_funcs.R |only inst/test_apps/test_rxode2_system.R |only man/NCA_Server.Rd | 34 --- man/ruminate.Rd | 7 vignettes/noncompartmental_analysis.Rmd | 1 vignettes/rmdhunks |only 23 files changed, 192 insertions(+), 370 deletions(-)
Title: Plotting Decision Curve Analysis with Coloured Bars
Description: Decision curve analysis is a method for evaluating and comparing prediction models that incorporates clinical consequences, requires only the data set on which the models are tested, and can be applied to models that have either continuous or dichotomous results. The 'ggscidca' package adds coloured bars of discriminant relevance to the traditional decision curve. Improved practicality and aesthetics. This method was described by Balachandran VP (2015) <doi:10.1016/S1470-2045(14)71116-7>.
Author: Qiang Liu [aut, cre]
Maintainer: Qiang Liu <dege857@163.com>
Diff between ggscidca versions 0.1.0 dated 2024-03-04 and 0.1.9 dated 2024-03-13
DESCRIPTION | 8 ++-- MD5 | 25 ++++++++------ NAMESPACE | 2 + R/LIRI.R |only R/getplot.R | 77 +++++++++++++++++++++++++++++++++++++++------ R/modeldata.R | 8 ++++ R/randomForest.R |only R/scidca.R | 38 +++++++++++++++++++++- R/scidca.coxph.R | 26 ++++++++++++--- R/scidca.glm.R | 25 ++++++++++++-- data/LIRI.rda |only man/LIRI.Rd |only man/scidca.Rd | 57 ++++++++++++++++++++++++++++++++- man/scidca.coxph.Rd | 38 +++++++++++++++++++++- man/scidca.glm.Rd | 38 +++++++++++++++++++++- man/scidca.randomForest.Rd |only 16 files changed, 303 insertions(+), 39 deletions(-)
Title: Disease-Drived Differential Proteins Co-Expression Network
Analysis
Description: Functions designed to connect disease-related differential proteins and
co-expression network. It provides the basic statics analysis included t test, ANOVA analysis.
The network construction is not offered by the package, you can used 'WGCNA' package which you
can learn in Peter et al. (2008) <doi:10.1186/1471-2105-9-559>. It also provides module analysis
included PCA analysis, two enrichment analysis, Planner maximally filtered graph extraction and
hub analysis.
Author: Kefu Liu [aut, cre]
Maintainer: Kefu Liu <liukefu19@163.com>
Diff between DDPNA versions 0.3.1 dated 2022-05-17 and 0.3.3 dated 2024-03-13
DESCRIPTION | 8 - MD5 | 20 ++-- R/DEPextract.R | 16 +-- R/Moduleconstruction.R | 10 +- R/missing_value_impute.R | 111 ++------------------------- R/network.R | 165 +++++++++++------------------------------ man/DDPNA-package.Rd | 10 +- man/DEP_Mod_net_plot.Rd | 2 man/SoftThresholdScaleGraph.Rd | 5 - man/dataStatInf.Rd | 6 - man/missing_value_impute.Rd | 2 11 files changed, 101 insertions(+), 254 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] ,
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 2.10.2 dated 2024-02-16 and 2.11.1 dated 2024-03-13
DESCRIPTION | 6 +++--- MD5 | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Title: Explore Brazilian Flora 2020 Database
Description: A collection of functions designed to retrieve, filter and spatialize data from the Brazilian Flora 2020 dataset. For more information about the dataset, please visit <https://floradobrasil.jbrj.gov.br/consulta/>.
Author: Weverton Trindade [aut, cre]
Maintainer: Weverton Trindade <wevertonf1993@gmail.com>
Diff between florabr versions 1.0.1 dated 2023-12-10 and 1.1.0 dated 2024-03-13
DESCRIPTION | 9 MD5 | 53 - NAMESPACE | 5 NEWS.md | 6 R/check_names.R | 7 R/check_version.R | 202 +++--- R/filter_florabR.R | 956 +++++++++++++++---------------- R/get_florabr.R | 276 ++++---- R/get_pam.R |only R/get_spat_occ.R | 516 ++++++++-------- R/helpers.R | 1078 ++++++++++++++++++----------------- R/load_florabR.R | 226 +++---- README.md | 277 ++++---- build/vignette.rds |binary inst/doc/getting_pam.R |only inst/doc/getting_pam.Rmd |only inst/doc/getting_pam.html |only inst/doc/getting_started.R | 6 inst/doc/getting_started.Rmd | 309 +++++----- inst/doc/getting_started.html | 141 ++-- inst/doc/selecting_species.R | 26 inst/doc/selecting_species.Rmd | 842 +++++++++++++-------------- inst/doc/selecting_species.html | 32 - man/check_names.Rd | 5 man/get_florabr.Rd | 17 man/get_pam.Rd |only man/load_florabr.Rd | 2 vignettes/getting_pam.Rmd |only vignettes/getting_started.Rmd | 309 +++++----- vignettes/selecting_species.Rmd | 842 +++++++++++++-------------- vignettes/vignettes_img/Image_09.png |only 31 files changed, 3128 insertions(+), 3014 deletions(-)
Title: Describe Pedigree Relationships in Words
Description: Describe in words the genealogical relationship between two
members of a given pedigree, using the algorithm in Vigeland (2022)
<doi:10.1186/s12859-022-04759-y>. 'verbalisr' is part of the
'pedsuite' collection of packages for pedigree analysis. For a
demonstration of 'verbalisr', see the online app 'QuickPed' at
<https://magnusdv.shinyapps.io/quickped>.
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between verbalisr versions 0.5.1 dated 2023-08-19 and 0.5.2 dated 2024-03-13
DESCRIPTION | 15 ++++++++------- MD5 | 14 +++++++------- NEWS.md | 19 ++++++++++++------- R/data.R | 2 +- R/utils.R | 5 +---- man/habsburg.Rd | 2 +- tests/testthat/test-ped-lists.R | 3 --- tests/testthat/test-verbalise.R | 10 +--------- 8 files changed, 31 insertions(+), 39 deletions(-)
Title: Space-Filling Design under Maximin Distance
Description: Constructs a space-filling design under the criterion of maximum-minimum distance. Both discrete and continuous searches are provided.
Author: Furong Sun <furong.sun@gmail.com>, Robert B. Gramacy <rbg@vt.edu>
Maintainer: Furong Sun <furong.sun@gmail.com>
Diff between maximin versions 1.0-4 dated 2021-01-10 and 1.0-5 dated 2024-03-13
ChangeLog | 8 ++++++++ DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ R/maximin.R | 13 ++++--------- R/maximin_cand.R | 37 ++++++++++++++++--------------------- README | 2 +- man/maximin.Rd | 3 ++- 7 files changed, 44 insertions(+), 45 deletions(-)
Title: Goodness-of-Fit Methods for Complete and Right-Censored Data
Description: Graphical tools and goodness-of-fit tests for complete and right-censored data:
1. Kolmogorov-Smirnov, Cramér-von Mises, and Anderson-Darling tests,
which use the empirical distribution function for complete data
and are extended for right-censored data.
2. Generalized chi-squared-type test, which is based on the squared
differences between observed and expected counts using random
cells with right-censored data.
3. A series of graphical tools such as probability or cumulative hazard
plots to guide the decision about the most suitable parametric model
for the data.
Author: Klaus Langohr [aut, cre],
Mireia Besalu [aut],
Matilde Francisco [aut],
Guadalupe Gomez [aut]
Maintainer: Klaus Langohr <klaus.langohr@upc.edu>
Diff between GofCens versions 0.92 dated 2022-01-05 and 0.97 dated 2024-03-13
GofCens-0.92/GofCens/R/chisqcens1.R |only GofCens-0.92/GofCens/R/chisqcens2.R |only GofCens-0.92/GofCens/man/chisqcens1.Rd |only GofCens-0.92/GofCens/man/chisqcens2.Rd |only GofCens-0.97/GofCens/DESCRIPTION | 36 +- GofCens-0.97/GofCens/MD5 | 38 +- GofCens-0.97/GofCens/NAMESPACE | 9 GofCens-0.97/GofCens/R/ADcens.R |only GofCens-0.97/GofCens/R/CvMcens.R |only GofCens-0.97/GofCens/R/KScens.R | 341 ++++++++++++---------- GofCens-0.97/GofCens/R/chisqcens.R |only GofCens-0.97/GofCens/R/cumhazPlot.R | 425 ++++++++++++++-------------- GofCens-0.97/GofCens/R/gofcens.R | 268 ++++++++++------- GofCens-0.97/GofCens/R/kmPlot.R |only GofCens-0.97/GofCens/R/probPlot.R | 42 ++ GofCens-0.97/GofCens/data/nba.rda |binary GofCens-0.97/GofCens/man/ADcens.Rd |only GofCens-0.97/GofCens/man/CvMcens.Rd |only GofCens-0.97/GofCens/man/GofCens-package.Rd | 45 ++ GofCens-0.97/GofCens/man/KScens.Rd | 53 ++- GofCens-0.97/GofCens/man/chisqcens.Rd |only GofCens-0.97/GofCens/man/cumhazPlot.Rd | 30 + GofCens-0.97/GofCens/man/gofcens.Rd | 59 ++- GofCens-0.97/GofCens/man/kmPlot.Rd |only GofCens-0.97/GofCens/man/nba.Rd | 12 GofCens-0.97/GofCens/man/probPlot.Rd | 39 +- 26 files changed, 798 insertions(+), 599 deletions(-)
Title: Corrected Test Statistics for Comparing Machine Learning Models
on Correlated Samples
Description: Calculate a set of corrected test statistics for cases when samples
are not independent, such as when classification accuracy values are obtained
over resamples or through k-fold cross-validation, as proposed by Nadeau and Bengio (2003) <doi:10.1023/A:1024068626366>
and presented in Bouckaert and Frank (2004) <doi:10.1007/978-3-540-24775-3_3>.
Author: Trent Henderson [cre, aut]
Maintainer: Trent Henderson <then6675@uni.sydney.edu.au>
Diff between correctR versions 0.1.3 dated 2023-08-20 and 0.2.1 dated 2024-03-13
DESCRIPTION | 8 LICENSE | 2 MD5 | 35 - R/correctR.R | 20 R/kfold_ttest.R | 132 ++-- R/repkfold_ttest.R | 167 +++-- R/resampled_ttest.R | 138 ++-- R/zzz.R |only README.md | 106 +-- build/vignette.rds |binary inst/doc/correctR.R | 80 +- inst/doc/correctR.Rmd | 233 ++++---- inst/doc/correctR.html | 1076 +++++++++++++++++++------------------- man/kfold_ttest.Rd | 14 man/repkfold_ttest.Rd | 80 +- man/resampled_ttest.Rd | 14 tests/testthat/helper-core_data.R | 24 tests/testthat/test-correctR.R | 31 - vignettes/correctR.Rmd | 233 ++++---- 19 files changed, 1288 insertions(+), 1105 deletions(-)
Title: Small Area Estimation for Continuous Zero Inflated Data
Description: Provides functionality to fit a zero-inflated estimator for small area estimation.
This estimator is a combines a linear mixed effects regression model and a logistic
mixed effects regression model via a two-stage modeling approach. The estimator's mean
squared error is estimated via a parametric bootstrap method. Chandra and others
(2012, <doi:10.1080/03610918.2011.598991>) introduce and describe this estimator and mean
squared error estimator. White and others (2024+, <arXiv:2402.03263>) describe the
applicability of this estimator to estimation of forest attributes and further assess the
estimator's properties.
Author: Josh Yamamoto [aut, cre],
Dinan Elsyad [aut],
Grayson White [aut],
Julian Schmitt [aut],
Niels Korsgaard [aut],
Kelly McConville [aut],
Kate Hu [aut]
Maintainer: Josh Yamamoto <joshuayamamoto5@gmail.com>
Diff between saeczi versions 0.1.0 dated 2024-02-13 and 0.1.1 dated 2024-03-13
saeczi-0.1.0/saeczi/tests/testthat/test-unit_zi.R |only saeczi-0.1.1/saeczi/DESCRIPTION | 24 - saeczi-0.1.1/saeczi/LICENSE |only saeczi-0.1.1/saeczi/MD5 | 23 - saeczi-0.1.1/saeczi/NAMESPACE | 7 saeczi-0.1.1/saeczi/NEWS.md | 2 saeczi-0.1.1/saeczi/R/RcppExports.R | 4 saeczi-0.1.1/saeczi/R/saeczi.R | 312 +++++++--------------- saeczi-0.1.1/saeczi/R/utils.R | 248 +++++++++++++++-- saeczi-0.1.1/saeczi/README.md | 47 +-- saeczi-0.1.1/saeczi/man/saeczi.Rd | 5 saeczi-0.1.1/saeczi/src/RcppExports.cpp | 9 saeczi-0.1.1/saeczi/src/helpers.cpp | 27 + saeczi-0.1.1/saeczi/tests/testthat/test-saeczi.R |only 14 files changed, 419 insertions(+), 289 deletions(-)
Title: Nested Cross-Validation with 'glmnet' and 'caret'
Description: Implements nested k*l-fold cross-validation for lasso and elastic-net regularised linear models via the 'glmnet' package and other machine learning models via the 'caret' package. Cross-validation of 'glmnet' alpha mixing parameter and embedded fast filter functions for feature selection are provided. Described as double cross-validation by Stone (1977) <doi:10.1111/j.2517-6161.1977.tb01603.x>. Also implemented is a method using outer CV to measure unbiased model performance metrics when fitting Bayesian linear and logistic regression shrinkage models using the horseshoe prior over parameters to encourage a sparse model as described by Piironen & Vehtari (2017) <doi:10.1214/17-EJS1337SI>.
Author: Myles Lewis [aut, cre] ,
Athina Spiliopoulou [aut] ,
Cankut Cubuk [ctb] ,
Katriona Goldmann [ctb]
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
Diff between nestedcv versions 0.7.4 dated 2024-01-30 and 0.7.8 dated 2024-03-13
nestedcv-0.7.4/nestedcv/man/anova_filter.Rd |only nestedcv-0.7.4/nestedcv/man/correl_filter.Rd |only nestedcv-0.7.4/nestedcv/man/layer_filter.Rd |only nestedcv-0.7.4/nestedcv/man/wilcoxon_filter.Rd |only nestedcv-0.7.4/nestedcv/vignettes/boxplot.png |only nestedcv-0.7.8/nestedcv/DESCRIPTION | 27 + nestedcv-0.7.8/nestedcv/MD5 | 73 ++-- nestedcv-0.7.8/nestedcv/NAMESPACE | 15 - nestedcv-0.7.8/nestedcv/NEWS.md | 15 + nestedcv-0.7.8/nestedcv/R/complex_filters.R | 129 ++++---- nestedcv-0.7.8/nestedcv/R/cva.glmnet.R | 21 + nestedcv-0.7.8/nestedcv/R/filters.R | 141 +-------- nestedcv-0.7.8/nestedcv/R/metrics.R |only nestedcv-0.7.8/nestedcv/R/nestcv.train.R | 18 - nestedcv-0.7.8/nestedcv/R/nestcv_SuperLearner.R | 20 - nestedcv-0.7.8/nestedcv/R/nestedcv.R | 22 - nestedcv-0.7.8/nestedcv/R/outercv.R | 81 ++--- nestedcv-0.7.8/nestedcv/R/precision_recall.R |only nestedcv-0.7.8/nestedcv/R/repeatcv.R | 220 +++++++++++---- nestedcv-0.7.8/nestedcv/R/shap.R | 4 nestedcv-0.7.8/nestedcv/build/vignette.rds |binary nestedcv-0.7.8/nestedcv/inst/doc/nestedcv.R | 86 +++-- nestedcv-0.7.8/nestedcv/inst/doc/nestedcv.Rmd | 173 ++++++++--- nestedcv-0.7.8/nestedcv/inst/doc/nestedcv.html | 263 +++++++++++------- nestedcv-0.7.8/nestedcv/inst/doc/nestedcv_hsstan.R | 5 nestedcv-0.7.8/nestedcv/inst/doc/nestedcv_hsstan.Rmd | 7 nestedcv-0.7.8/nestedcv/inst/doc/nestedcv_hsstan.html | 9 nestedcv-0.7.8/nestedcv/inst/doc/nestedcv_shap.R | 36 +- nestedcv-0.7.8/nestedcv/inst/doc/nestedcv_shap.Rmd | 43 ++ nestedcv-0.7.8/nestedcv/inst/doc/nestedcv_shap.html | 55 ++- nestedcv-0.7.8/nestedcv/man/coef.cva.glmnet.Rd | 3 nestedcv-0.7.8/nestedcv/man/lines.prc.Rd |only nestedcv-0.7.8/nestedcv/man/metrics.Rd |only nestedcv-0.7.8/nestedcv/man/outercv.Rd | 12 nestedcv-0.7.8/nestedcv/man/plot.prc.Rd |only nestedcv-0.7.8/nestedcv/man/pls_filter.Rd |only nestedcv-0.7.8/nestedcv/man/prc.Rd |only nestedcv-0.7.8/nestedcv/man/predict.cva.glmnet.Rd |only nestedcv-0.7.8/nestedcv/man/repeatcv.Rd | 52 ++- nestedcv-0.7.8/nestedcv/man/repeatfolds.Rd | 5 nestedcv-0.7.8/nestedcv/man/ttest_filter.Rd | 72 ++++ nestedcv-0.7.8/nestedcv/vignettes/nestedcv.Rmd | 173 ++++++++--- nestedcv-0.7.8/nestedcv/vignettes/nestedcv_hsstan.Rmd | 7 nestedcv-0.7.8/nestedcv/vignettes/nestedcv_shap.Rmd | 43 ++ 44 files changed, 1141 insertions(+), 689 deletions(-)
Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and
high-performance 2D drawing library. The 'ragg' package provides a set
of graphic devices based on AGG to use as alternative to the raster
devices provided through the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut]
,
Maxim Shemanarev [aut, cph] ,
Tony Juricic [ctb, cph] ,
Milan Marusinec [ctb, cph] ,
Spencer Garrett [ctb] ,
Posit, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ragg versions 1.2.7 dated 2023-12-11 and 1.3.0 dated 2024-03-13
DESCRIPTION | 8 MD5 | 59 +- NEWS.md | 9 R/agg_dev.R | 41 + README.md | 13 configure | 2 man/agg_capture.Rd | 5 man/agg_jpeg.Rd | 5 man/agg_png.Rd | 5 man/agg_ppm.Rd | 5 man/agg_supertransparent.Rd | 5 man/agg_tiff.Rd | 5 man/figures/README-unnamed-chunk-3-1.png |binary src/AggDevice.h | 647 +++++++++++++++++++++++++++---- src/AggDevice16.h | 4 src/AggDeviceCapture.h | 4 src/AggDeviceJpeg.h | 4 src/AggDevicePng.h | 8 src/AggDevicePpm.h | 4 src/AggDeviceTiff.h | 8 src/RenderBuffer.h | 72 +++ src/capture_dev.cpp | 5 src/group.h |only src/init.cpp | 12 src/init_device.h | 139 ++++++ src/jpeg_dev.cpp | 3 src/png_dev.cpp | 19 src/ppm_dev.cpp | 5 src/ragg.h | 13 src/text_renderer.h | 106 +++-- src/tiff_dev.cpp | 6 31 files changed, 1016 insertions(+), 205 deletions(-)
Title: 'DataRobot' Predictive Modeling API
Description: For working with the 'DataRobot' predictive modeling platform's API <https://www.datarobot.com/>.
Author: Ron Pearson [aut],
Zachary Deane-Mayer [aut],
David Chudzicki [aut],
Dallin Akagi [aut],
Sergey Yurgenson [aut],
Thakur Raj Anand [aut],
Peter Hurford [aut],
Chester Ismay [aut],
AJ Alon [aut],
Andrew Watson [aut],
Gregory Williams [aut],
Anastasiia [...truncated...]
Maintainer: AJ Alon <api-maintainer@datarobot.com>
Diff between datarobot versions 2.18.5 dated 2023-11-02 and 2.18.6 dated 2024-03-13
DESCRIPTION | 6 - MD5 | 60 ++++++------- NEWS.md | 8 + R/GetPredictions.R | 9 -- R/ListModelJobs.R | 16 +-- R/MultiSeries.R | 7 - R/PredictionDatasets.R | 7 - R/Projects.R | 9 +- R/StartRetryWaiter.R | 6 - inst/doc/AdvancedTuning.html | 115 +++++++++++++------------ inst/doc/AdvancedVignette.html | 117 +++++++++++++------------- inst/doc/Calendars.html | 115 +++++++++++++------------ inst/doc/ComparingSubsets.html | 133 +++++++++++++++--------------- inst/doc/ComplianceDocumentation.html | 115 +++++++++++++------------ inst/doc/DatetimePartitionedProjects.html | 115 +++++++++++++------------ inst/doc/Deployment.html | 115 +++++++++++++------------ inst/doc/IntroductionToDataRobot.html | 115 +++++++++++++------------ inst/doc/Multiclass.Rmd | 4 inst/doc/Multiclass.html | 115 +++++++++++++------------ inst/doc/PartialDependence.html | 133 +++++++++++++++--------------- inst/doc/PredictionExplanations.html | 115 +++++++++++++------------ inst/doc/RatingTables.html | 115 +++++++++++++------------ inst/doc/TimeSeries.html | 115 +++++++++++++------------ inst/doc/TrainingPredictions.html | 115 +++++++++++++------------ inst/doc/VariableImportance.html | 133 +++++++++++++++--------------- man/GetModelJob.Rd | 32 +++---- man/ListModelJobs.Rd | 26 ++--- man/ListProjects.Rd | 6 - man/RequestPredictions.Rd | 6 - man/StartRetryWaiter.Rd | 6 - vignettes/Multiclass.Rmd | 4 31 files changed, 1008 insertions(+), 985 deletions(-)
Title: Preprocessing Experience Sampling Method (ESM) Data
Description: Tailored explicitly for Experience Sampling Method (ESM)
data, it contains a suite of functions designed to simplify
preprocessing steps and create subsequent reporting. It empowers
users with capabilities to extract critical insights during
preprocessing, conducts thorough data quality assessments (e.g., design
and sampling scheme checks, compliance rate, careless responses), and
generates visualizations and concise summary tables tailored
specifically for ESM data. Additionally, it streamlines the creation
of informative and interactive preprocessing reports, enabling
researchers to transparently share their dataset preprocessing
methodologies. Finally, it is part of a larger ecosystem which
includes a framework and a web gallery
(<https://preprocess.esmtools.com/>).
Author: Jordan Revol [aut, cre, cph] ,
Koen Niemeijer [ctb]
Maintainer: Jordan Revol <jordan.revol@kuleuven.be>
Diff between esmtools versions 1.0.0 dated 2024-01-11 and 1.0.1 dated 2024-03-13
DESCRIPTION | 6 MD5 | 28 NEWS.md | 8 R/txt.R | 28 R/vars_consist.R | 19 README.md | 20 data/esmdata_raw.rda |binary inst/extdata/esmdata_preprocessed.csv | 2400 +++++----- inst/extdata/esmdata_raw.csv | 4 inst/rmarkdown/templates/advanced_preprocess_report/skeleton/skeleton.Rmd | 33 inst/rmarkdown/templates/data_characteristics_report/skeleton/skeleton.Rmd | 4 inst/rmarkdown/templates/preprocess_report/skeleton/skeleton.Rmd | 37 man/txt.Rd | 29 man/vars_consist.Rd | 4 tests/testthat/test-txt.R | 6 15 files changed, 1319 insertions(+), 1307 deletions(-)
Title: Bayesian Spectral Inference for Time Series
Description: Implementations of Bayesian parametric, nonparametric and semiparametric procedures for univariate and multivariate time series. The package is based on the methods presented in C. Kirch et al (2018) <doi:10.1214/18-BA1126>, A. Meier (2018) <https://opendata.uni-halle.de//handle/1981185920/13470> and Y. Tang et al (2023) <arXiv:2303.11561>. It was supported by DFG grants KI 1443/3-1 and KI 1443/3-2.
Author: Alexander Meier [aut],
Claudia Kirch [aut],
Matthew C. Edwards [aut],
Renate Meyer [aut, cre],
Yifu Tang [aut]
Maintainer: Renate Meyer <renate.meyer@auckland.ac.nz>
Diff between beyondWhittle versions 1.2.0 dated 2023-05-31 and 1.2.1 dated 2024-03-13
DESCRIPTION | 8 MD5 | 14 R/dynamicWhittle_miscellanea_zigzag.R | 2 R/dynamicWhittle_prior_and_mcmc_params.R | 2 R/psd_S3.R | 768 +++++++++++++++---------------- man/bdp_dw_bayes_factor_k1.Rd | 4 man/local_moving_FT_zigzag.Rd | 2 man/print_summary_gibbs_psd_help.Rd | 2 8 files changed, 401 insertions(+), 401 deletions(-)
Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally
demanding analysis projects.
The 'targets' package is a 'Make'-like pipeline tool for statistics and
data science in R. The package skips costly runtime for tasks
that are already up to date,
orchestrates the necessary computation with implicit parallel computing,
and abstracts files as R objects. If all the current output matches
the current upstream code and data, then the whole pipeline is up
to date, and the results are more trustworthy than otherwise.
The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
,
Matthew T. Warkentin [ctb],
Mark Edmondson [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between targets versions 1.5.1 dated 2024-02-15 and 1.6.0 dated 2024-03-13
DESCRIPTION | 6 MD5 | 260 +++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 11 + R/class_glimpse.R | 8 R/class_inspection.R | 25 ++ R/class_mermaid.R | 10 - R/class_options.R | 27 ++- R/class_pattern.R | 4 R/class_process.R | 66 +++---- R/class_runtime.R | 18 +- R/class_settings.R | 10 + R/class_stem.R | 1 R/class_target.R | 4 R/class_visnetwork.R | 8 R/class_visual.R | 30 ++- R/tar_backoff.R | 16 - R/tar_branch_index.R | 2 R/tar_built.R | 4 R/tar_canceled.R | 4 R/tar_completed.R | 4 R/tar_config_get.R | 6 R/tar_config_set.R | 19 ++ R/tar_delete.R | 10 - R/tar_described_as.R |only R/tar_errored.R | 4 R/tar_exist_objects.R | 1 R/tar_glimpse.R | 17 + R/tar_invalidate.R | 6 R/tar_load.R | 7 R/tar_load_raw.R | 3 R/tar_make.R | 13 - R/tar_manifest.R | 29 +-- R/tar_mermaid.R | 13 + R/tar_network.R | 23 +- R/tar_newer.R | 7 R/tar_objects.R | 9 - R/tar_older.R | 7 R/tar_option_get.R | 1 R/tar_option_set.R | 2 R/tar_outdated.R | 8 R/tar_process.R | 7 R/tar_progress.R | 10 - R/tar_progress_branches.R | 6 R/tar_progress_summary.R | 4 R/tar_renv.R | 3 R/tar_sitrep.R | 6 R/tar_skipped.R | 4 R/tar_started.R | 4 R/tar_target.R | 14 + R/tar_target_raw.R | 9 - R/tar_unversion.R | 4 R/tar_visnetwork.R | 19 +- R/tar_workspaces.R | 4 R/utils_assert.R | 2 R/utils_callr.R | 28 ++- R/utils_character.R | 7 R/utils_cli.R | 20 +- R/utils_time.R | 20 +- inst/doc/overview.html | 155 +++++++++++++---- man/tar_active.Rd | 1 man/tar_backoff.Rd | 17 - man/tar_branch_index.Rd | 2 man/tar_built.Rd | 8 man/tar_call.Rd | 1 man/tar_callr_inner_try.Rd | 6 man/tar_cancel.Rd | 1 man/tar_canceled.Rd | 8 man/tar_completed.Rd | 8 man/tar_config_set.Rd | 8 man/tar_definition.Rd | 1 man/tar_delete.Rd | 8 man/tar_described_as.Rd |only man/tar_envir.Rd | 1 man/tar_errored.Rd | 8 man/tar_exist_objects.Rd | 3 man/tar_glimpse.Rd | 20 +- man/tar_group.Rd | 1 man/tar_invalidate.Rd | 6 man/tar_load.Rd | 7 man/tar_load_raw.Rd | 3 man/tar_make.Rd | 13 - man/tar_make_clustermq.Rd | 13 - man/tar_make_future.Rd | 13 - man/tar_manifest.Rd | 26 +-- man/tar_mermaid.Rd | 26 +-- man/tar_name.Rd | 1 man/tar_network.Rd | 23 +- man/tar_newer.Rd | 7 man/tar_objects.Rd | 9 - man/tar_older.Rd | 7 man/tar_option_set.Rd | 10 + man/tar_outdated.Rd | 8 man/tar_path.Rd | 1 man/tar_path_script.Rd | 1 man/tar_path_script_support.Rd | 1 man/tar_path_store.Rd | 1 man/tar_path_target.Rd | 1 man/tar_poll.Rd | 4 man/tar_process.Rd | 5 man/tar_progress.Rd | 10 - man/tar_progress_branches.Rd | 6 man/tar_progress_summary.Rd | 4 man/tar_renv.Rd | 4 man/tar_sitrep.Rd | 6 man/tar_skipped.Rd | 8 man/tar_source.Rd | 1 man/tar_started.Rd | 8 man/tar_store.Rd | 1 man/tar_target.Rd | 12 + man/tar_target_raw.Rd | 12 + man/tar_unversion.Rd | 6 man/tar_visnetwork.Rd | 24 +- man/tar_workspaces.Rd | 6 tests/interactive/test-mermaid.R | 45 ++++- tests/interactive/test-process.R | 15 + tests/interactive/test-visnetwork.R | 22 +- tests/testthat/test-class_glimpse.R | 4 tests/testthat/test-class_inspection.R | 27 ++- tests/testthat/test-class_options.R | 20 ++ tests/testthat/test-class_runtime.R | 10 + tests/testthat/test-class_target.R | 3 tests/testthat/test-tar_config_projects.R | 2 tests/testthat/test-tar_config_set.R | 27 ++- tests/testthat/test-tar_config_yaml.R | 2 tests/testthat/test-tar_described_as.R |only tests/testthat/test-tar_manifest.R | 7 tests/testthat/test-tar_network.R | 5 tests/testthat/test-tar_option_set.R | 12 + tests/testthat/test-tar_target.R | 7 tests/testthat/test-tar_target_raw.R | 7 tests/testthat/test-utils_character.R |only tests/testthat/test-utils_time.R | 28 ++- 133 files changed, 1119 insertions(+), 550 deletions(-)
Title: Access Finnish Geospatial Data
Description: Designed to simplify geospatial data access from the Statistics Finland Web Feature Service API <https://geo.stat.fi/geoserver/index.html>, the geofi package offers researchers and analysts a set of tools to obtain and harmonize administrative spatial data for a wide range of applications, from urban planning to environmental research. The package contains annually updated time series of municipality key datasets that can be used for data aggregation and language translations.
Author: Markus Kainu [aut, cre] ,
Joona Lehtomaki [aut] ,
Juuso Parkkinen [ctb] ,
Jani Miettinen [ctb],
Pyry Kantanen [ctb],
Sampo Vesanen [ctb],
Leo Lahti [aut]
Maintainer: Markus Kainu <markus.kainu@kapsi.fi>
Diff between geofi versions 1.0.14 dated 2024-02-05 and 1.0.15 dated 2024-03-13
DESCRIPTION | 11 +++--- MD5 | 34 +++++++++++-------- NEWS.md | 4 ++ R/data.R | 37 +++++++++++++++++++++ build/vignette.rds |binary data/sotkadata_population.rda |only data/sotkadata_swedish_speaking_pop.rda |only data/statfi_zipcode_population.rda |only inst/doc/geofi_datasets.R | 7 +--- inst/doc/geofi_datasets.Rmd | 9 +---- inst/doc/geofi_datasets.html | 50 +++++++++++++---------------- inst/doc/geofi_joining_attribute_data.R | 13 ++----- inst/doc/geofi_joining_attribute_data.Rmd | 17 +++------ inst/doc/geofi_joining_attribute_data.html | 31 ++++++++--------- inst/doc/geofi_making_maps.html | 34 +++++++++---------- inst/doc/geofi_spatial_analysis.html | 14 ++++---- man/sotkadata_population.Rd |only man/sotkadata_swedish_speaking_pop.Rd |only man/statfi_zipcode_population.Rd |only vignettes/geofi_datasets.Rmd | 9 +---- vignettes/geofi_joining_attribute_data.Rmd | 17 +++------ 21 files changed, 153 insertions(+), 134 deletions(-)
Title: Excess Mortality
Description: Implementation of method for estimating excess mortality and other health related outcomes from weekly or daily count data described in Acosta and Irizarry (2021) "A Flexible Statistical Framework for Estimating Excess Mortality".
Author: Rafael A. Irizarry [aut, cre],
Rolando Acosta [aut],
Ferenci Tamas [ctb]
Maintainer: Rafael A. Irizarry <rafael_irizarry@dfci.harvard.edu>
Diff between excessmort versions 0.6.1 dated 2021-10-11 and 0.7.0 dated 2024-03-13
DESCRIPTION | 14 MD5 | 46 +- NAMESPACE | 3 R/approx_demographics.R | 122 ++++-- R/compute_expected.R | 168 +++++--- R/excess_cumulative.R | 2 R/excess_model.R | 131 +++--- R/excess_stats.R | 4 R/expected_diagnostic.R | 100 +++- R/expected_plot.R | 20 build/vignette.rds |binary data/puerto_rico_counts.rda |binary data/puerto_rico_icd.rda |binary data/world_counts.rda |binary inst/doc/excessmort.R | 22 - inst/doc/excessmort.html | 894 +++++++++++++++++++++++++++++--------------- man/approx_demographics.Rd | 21 - man/compute_expected.Rd | 24 - man/excess_model.Rd | 11 man/excess_stats.Rd | 4 man/expected_diagnostic.Rd | 2 man/expected_plot.Rd | 2 man/puerto_rico_counts.Rd | 2 man/puerto_rico_icd.Rd | 2 24 files changed, 1054 insertions(+), 540 deletions(-)
Title: Benchmark and Frontier Analysis Using DEA and SFA
Description: Methods for frontier
analysis, Data Envelopment Analysis (DEA), under different
technology assumptions (fdh, vrs, drs, crs, irs, add/frh, and fdh+),
and using different efficiency measures (input based, output based,
hyperbolic graph, additive, super, and directional efficiency). Peers
and slacks are available, partial price information can be included,
and optimal cost, revenue and profit can be calculated. Evaluation of
mergers is also supported. Methods for graphing the technology sets
are also included. There is also support for comparative methods based
on Stochastic Frontier Analyses (SFA) and for convex nonparametric
least squares of convex functions (STONED). In general, the methods
can be used to solve not only standard models, but also many other
model variants. It complements the book, Bogetoft and Otto,
Benchmarking with DEA, SFA, and R, Springer-Verlag, 2011, but can of
course also be used as a stand-alone package.
Author: Peter Bogetoft and Lars Otto
Maintainer: Lars Otto <larsot23@gmail.com>
Diff between Benchmarking versions 0.31 dated 2022-11-04 and 0.32 dated 2024-03-13
DESCRIPTION | 9 ++-- MD5 | 40 +++++++++++---------- NAMESPACE | 4 +- NEWS | 19 +++++++--- R/Benchmarking.R |only R/dea.R | 11 ++++- R/dea.dual.R | 7 +++ R/deaUtil.R | 19 +++++----- R/eladder.R |only R/graphEff.R | 101 ++++++++++++++++++++++++++----------------------------- R/sfa.R | 2 - inst/CITATION | 4 +- man/cost.opt.Rd | 6 ++- man/dea.Rd | 21 ++++++----- man/dea.boot.Rd | 10 ++++- man/dea.dual.Rd | 7 +++ man/dea.merge.Rd | 11 +++-- man/eladder.Rd | 44 +++++++++++++++-------- man/excess.Rd | 4 +- man/pigdata.Rd | 4 +- man/sfa.Rd | 7 ++- man/slack.Rd | 8 +++- 22 files changed, 199 insertions(+), 139 deletions(-)
Title: Extracting and Visualizing Bayesian Graphical Models
Description: Fit and visualize the results of a Bayesian analysis of networks commonly found in psychology.
The package supports fitting cross-sectional network models fitted using the packages 'BDgraph', 'bgms' and 'BGGM'.
The package provides the parameter estimates, posterior inclusion probabilities, inclusion Bayes factor, and the
posterior density of the parameters. In addition, for 'BDgraph' and 'bgms' it allows to assess the posterior
structure space. Furthermore, the package comes with an extensive suite for visualizing results.
Author: Karoline Huth [aut, cre] ,
Sara Keetelaar [ctb]
Maintainer: Karoline Huth <k.huth@uva.nl>
Diff between easybgm versions 0.1.1 dated 2023-11-14 and 0.1.2 dated 2024-03-13
DESCRIPTION | 12 - MD5 | 62 ++++-- NAMESPACE | 4 R/AuxiliaryFunctions.R | 132 +++++++++++-- R/bgm_plot_class.R | 103 +++++++--- R/easybgm.R | 46 ++-- R/functions.bdgraph.R | 124 ++++++++---- R/functions.bggm.R | 148 +++++++-------- R/functions.bgms.R | 177 ++++++------------ R/plottingfunctions.bgms.R | 220 ++++++++++++---------- R/plottingfunctions.easybgm.R | 379 +++++++++++++++++++++++++-------------- R/summary.easybgm.R | 114 +++++++++-- README.md | 6 man/HDI.Rd | 7 man/centrality.Rd | 7 man/complexity_probs.Rd | 7 man/easybgm.Rd | 9 man/edgeevidence.Rd | 7 man/network.Rd | 17 - man/prior_sensitivity.Rd |only man/structure.Rd | 10 - man/structure_probs.Rd | 7 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/easybgm |only tests/testthat/_snaps/easybgm.md | 30 +-- tests/testthat/test-easybgm.R | 90 ++++----- 26 files changed, 1044 insertions(+), 674 deletions(-)
Title: Analytical Calculation of Basket Trial Operating Characteristics
Description: Analytically calculates the operating characteristics of
single-stage and two-stage basket trials with equal sample sizes using the
power prior design by Baumann et al. (2024) <doi:10.48550/arXiv.2309.06988>
and the design by Fujikawa et al. (2020) <doi:10.1002/bimj.201800404>.
Author: Lukas Baumann [aut, cre]
Maintainer: Lukas Baumann <baumann@imbi.uni-heidelberg.de>
Diff between baskexact versions 0.1.0 dated 2021-09-15 and 1.0.0 dated 2024-03-13
baskexact-0.1.0/baskexact/R/generics.R |only baskexact-1.0.0/baskexact/DESCRIPTION | 46 - baskexact-1.0.0/baskexact/MD5 | 126 ++ baskexact-1.0.0/baskexact/NAMESPACE | 45 - baskexact-1.0.0/baskexact/R/RcppExports.R | 12 baskexact-1.0.0/baskexact/R/adjust_lambda.R | 131 ++- baskexact-1.0.0/baskexact/R/analysis.R | 23 baskexact-1.0.0/baskexact/R/basket_test.R | 106 +- baskexact-1.0.0/baskexact/R/baskexact-package.R | 6 baskexact-1.0.0/baskexact/R/borrowing.R | 127 ++ baskexact-1.0.0/baskexact/R/check.R | 24 baskexact-1.0.0/baskexact/R/class.R | 146 ++- baskexact-1.0.0/baskexact/R/ecd.R |only baskexact-1.0.0/baskexact/R/ess.R |only baskexact-1.0.0/baskexact/R/estim.R |only baskexact-1.0.0/baskexact/R/globalweights.R |only baskexact-1.0.0/baskexact/R/helper.R | 57 - baskexact-1.0.0/baskexact/R/interim.R |only baskexact-1.0.0/baskexact/R/monotonicity.R | 375 ++++++-- baskexact-1.0.0/baskexact/R/opt_design.R |only baskexact-1.0.0/baskexact/R/plot.R |only baskexact-1.0.0/baskexact/R/pow.R | 110 ++ baskexact-1.0.0/baskexact/R/rejection_probabilities.R | 431 +++++++++- baskexact-1.0.0/baskexact/R/toer.R | 107 ++ baskexact-1.0.0/baskexact/R/validate.R | 423 +++++++++ baskexact-1.0.0/baskexact/R/weights.R |only baskexact-1.0.0/baskexact/README.md | 139 +++ baskexact-1.0.0/baskexact/build |only baskexact-1.0.0/baskexact/inst |only baskexact-1.0.0/baskexact/man/OneStageBasket-class.Rd | 95 +- baskexact-1.0.0/baskexact/man/TwoStageBasket-class.Rd |only baskexact-1.0.0/baskexact/man/adjust_lambda.Rd | 200 ++-- baskexact-1.0.0/baskexact/man/basket_test.Rd | 128 +- baskexact-1.0.0/baskexact/man/check_mon_between.Rd | 193 ++-- baskexact-1.0.0/baskexact/man/check_mon_within.Rd | 197 ++-- baskexact-1.0.0/baskexact/man/ecd.Rd |only baskexact-1.0.0/baskexact/man/ess.Rd |only baskexact-1.0.0/baskexact/man/estim.Rd |only baskexact-1.0.0/baskexact/man/get_scenarios.Rd |only baskexact-1.0.0/baskexact/man/globalweights_diff.Rd |only baskexact-1.0.0/baskexact/man/globalweights_fix.Rd |only baskexact-1.0.0/baskexact/man/interim_posterior.Rd |only baskexact-1.0.0/baskexact/man/interim_postpred.Rd |only baskexact-1.0.0/baskexact/man/opt_design.Rd |only baskexact-1.0.0/baskexact/man/plot_weights.Rd |only baskexact-1.0.0/baskexact/man/pow.Rd | 220 ++--- baskexact-1.0.0/baskexact/man/setupOneStageBasket.Rd | 6 baskexact-1.0.0/baskexact/man/setupTwoStageBasket.Rd |only baskexact-1.0.0/baskexact/man/toer.Rd | 218 ++--- baskexact-1.0.0/baskexact/man/weights_cpp.Rd |only baskexact-1.0.0/baskexact/man/weights_fujikawa.Rd |only baskexact-1.0.0/baskexact/man/weights_jsd.Rd |only baskexact-1.0.0/baskexact/man/weights_mml.Rd |only baskexact-1.0.0/baskexact/man/weights_pool.Rd |only baskexact-1.0.0/baskexact/man/weights_separate.Rd |only baskexact-1.0.0/baskexact/src/Makevars | 1 baskexact-1.0.0/baskexact/src/Makevars.win | 1 baskexact-1.0.0/baskexact/src/RcppExports.cpp | 48 + baskexact-1.0.0/baskexact/src/ifelse_helper.cpp |only baskexact-1.0.0/baskexact/src/weight_beta.cpp | 2 baskexact-1.0.0/baskexact/tests/testthat/test-additionaltests.R |only baskexact-1.0.0/baskexact/tests/testthat/test-adjust_lambda.R | 165 +++ baskexact-1.0.0/baskexact/tests/testthat/test-basket_test.R | 70 + baskexact-1.0.0/baskexact/tests/testthat/test-borrowing.R | 104 +- baskexact-1.0.0/baskexact/tests/testthat/test-check.R | 20 baskexact-1.0.0/baskexact/tests/testthat/test-class.R | 22 baskexact-1.0.0/baskexact/tests/testthat/test-ecd.R |only baskexact-1.0.0/baskexact/tests/testthat/test-ess.R |only baskexact-1.0.0/baskexact/tests/testthat/test-estim.R |only baskexact-1.0.0/baskexact/tests/testthat/test-globalweights.R |only baskexact-1.0.0/baskexact/tests/testthat/test-helper.R | 106 +- baskexact-1.0.0/baskexact/tests/testthat/test-interim.R |only baskexact-1.0.0/baskexact/tests/testthat/test-monotonicity.R | 170 ++- baskexact-1.0.0/baskexact/tests/testthat/test-opt_design.R |only baskexact-1.0.0/baskexact/tests/testthat/test-plot.R |only baskexact-1.0.0/baskexact/tests/testthat/test-pow.R | 177 +++- baskexact-1.0.0/baskexact/tests/testthat/test-toer.R | 258 +++++ baskexact-1.0.0/baskexact/tests/testthat/test-weights.R |only baskexact-1.0.0/baskexact/vignettes |only 79 files changed, 3606 insertions(+), 1229 deletions(-)
Title: Treatment of Zeros, Left-Censored and Missing Values in
Compositional Data Sets
Description: Principled methods for the imputation of zeros, left-censored and missing data in
compositional data sets (Palarea-Albaladejo and Martin-Fernandez (2015) <doi:10.1016/j.chemolab.2015.02.019>).
Author: Javier Palarea-Albaladejo [cre, aut]
,
Josep Antoni Martin-Fernandez [aut]
Maintainer: Javier Palarea-Albaladejo <javier.palarea@udg.edu>
Diff between zCompositions versions 1.5.0-2 dated 2024-03-09 and 1.5.0-3 dated 2024-03-13
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 2 +- R/lrDA.R | 7 ++++--- R/lrEM.R | 10 +++++----- R/lrEMplus.R | 10 ++++++---- R/multReplus.R | 2 +- man/zCompositions-package.Rd | 4 ++-- 8 files changed, 30 insertions(+), 27 deletions(-)
Title: Patient Reported Outcomes Regression Analysis
Description: It offers a wide variety of techniques, such as graphics, recoding, or regression models, for a comprehensive analysis of patient-reported outcomes (PRO). Especially novel is the broad range of regression models based on the beta-binomial distribution useful for analyzing binomial data with over-dispersion in cross-sectional, longitudinal, or multidimensional response studies (see Najera-Zuloaga J., Lee D.-J. and Arostegui I. (2019) <doi:10.1002/bimj.201700251>).
Author: Josu Najera-Zuloaga <josu.najera@ehu.eus>, Dae-Jin Lee <Dae-Jin.Lee@ie.edu>, Inmaculada Arostegui <inmaculada.arostegui@ehu.eus>
Maintainer: Josu Najera-Zuloaga <josu.najera@ehu.eus>
Diff between PROreg versions 1.2 dated 2022-07-12 and 1.3 dated 2024-03-13
PROreg-1.2/PROreg/R/BIiwls.R |only PROreg-1.2/PROreg/R/BImm.R |only PROreg-1.2/PROreg/R/BIreg.R |only PROreg-1.2/PROreg/man/BIiwls.Rd |only PROreg-1.2/PROreg/man/BImm.Rd |only PROreg-1.2/PROreg/man/BIreg.Rd |only PROreg-1.2/PROreg/man/print.BIest.Rd |only PROreg-1.2/PROreg/man/print.BImm.Rd |only PROreg-1.2/PROreg/man/print.BIreg.Rd |only PROreg-1.2/PROreg/man/print.summary.BImm.Rd |only PROreg-1.2/PROreg/man/print.summary.BIreg.Rd |only PROreg-1.2/PROreg/man/summary.BImm.Rd |only PROreg-1.2/PROreg/man/summary.BIreg.Rd |only PROreg-1.3/PROreg/DESCRIPTION | 13 - PROreg-1.3/PROreg/MD5 | 31 +-- PROreg-1.3/PROreg/NAMESPACE | 16 - PROreg-1.3/PROreg/R/BBmm.R | 182 +++++++++----------- PROreg-1.3/PROreg/R/BBmm_EffectsEst_BBDelta.R | 235 +++++++++++++------------- PROreg-1.3/PROreg/R/BBmm_EffectsEst_NR.R | 141 +++++++-------- PROreg-1.3/PROreg/R/BBmm_VarEst.R | 133 ++++++++------ PROreg-1.3/PROreg/R/BBreg.R | 130 +++++++------- PROreg-1.3/PROreg/data |only PROreg-1.3/PROreg/man/BBmm.Rd | 41 ++-- PROreg-1.3/PROreg/man/EDpro.Rd |only 24 files changed, 464 insertions(+), 458 deletions(-)
Title: Cross-Validation Tools for Regression Models
Description: Tools that allow developers to write functions for
cross-validation with minimal programming effort and assist
users with model selection.
Author: Andreas Alfons [aut, cre]
Maintainer: Andreas Alfons <alfons@ese.eur.nl>
Diff between cvTools versions 0.3.2 dated 2012-05-14 and 0.3.3 dated 2024-03-13
DESCRIPTION | 32 - MD5 | 136 ++++--- NAMESPACE | 2 NEWS | 53 +- R/accessors.R | 88 ++-- R/aggregate.R | 156 ++++---- R/bwplot.R | 180 ++++----- R/cost.R | 322 ++++++++--------- R/cvFit.R | 242 ++++++------- R/cvFolds.R | 104 +++-- R/cvReshape.R | 204 +++++----- R/cvSelect.R | 164 ++++---- R/cvTool.R | 360 +++++++++---------- R/cvTools-package.R |only R/cvTuning.R | 308 ++++++++-------- R/densityplot.R | 186 +++++----- R/dotplot.R | 262 +++++++------- R/plot.R | 212 +++++------ R/print.R | 131 +++---- R/repCV.R | 594 ++++++++++++++++---------------- R/selectBest.R | 146 +++---- R/summary.R | 124 +++--- R/utils.R | 516 +++++++++++++-------------- R/xyplot.R | 300 ++++++++-------- build |only inst/doc/examples-full |only inst/doc/examples/example-aggregate.R | 76 +--- inst/doc/examples/example-bwplot.R | 87 +--- inst/doc/examples/example-cvSelect.R | 17 inst/doc/examples/example-densityplot.R | 87 +--- inst/doc/examples/example-dotplot.R | 19 - inst/doc/examples/example-plot.R | 102 ++--- inst/doc/examples/example-summary.R | 76 +--- inst/doc/examples/example-xyplot.R | 93 +---- inst/tests/test-cvFit-once.R | 142 +++---- inst/tests/test-cvFit-repeated.R | 124 +++--- inst/tests/test-cvTool-once.R | 140 +++---- inst/tests/test-cvTool-repeated.R | 118 +++--- inst/tests/test-cvTuning-once.R | 152 ++++---- inst/tests/test-cvTuning-repeated.R | 122 +++--- man/accessors.Rd | 68 +-- man/aggregate.cv.Rd | 91 +--- man/backup |only man/bwplot.cv.Rd | 102 ++--- man/cost.Rd | 203 +++++----- man/cvFit.Rd | 476 ++++++++++++------------- man/cvFolds.Rd | 91 ++-- man/cvReshape.Rd | 191 ++++------ man/cvSelect.Rd | 313 +++++++--------- man/cvTool.Rd | 266 ++++++-------- man/cvTools-package.Rd | 59 --- man/cvTuning.Rd | 540 ++++++++++++++--------------- man/densityplot.cv.Rd | 101 ++--- man/dotplot.cv.Rd | 201 ++++------ man/plot.cv.Rd | 119 ++---- man/repCV.Rd | 424 ++++++++++++---------- man/subset.cv.Rd | 45 +- man/summary.cv.Rd | 58 +-- man/xyplot.cv.Rd | 255 +++++-------- 59 files changed, 4733 insertions(+), 5047 deletions(-)
Title: Bayesian Preference Learning with the Mallows Rank Model
Description: An implementation of the Bayesian version of the Mallows rank model
(Vitelli et al., Journal of Machine Learning Research, 2018 <https://jmlr.org/papers/v18/15-481.html>;
Crispino et al., Annals of Applied Statistics, 2019 <doi:10.1214/18-AOAS1203>;
Sorensen et al., R Journal, 2020 <doi:10.32614/RJ-2020-026>;
Stein, PhD Thesis, 2023 <https://eprints.lancs.ac.uk/id/eprint/195759>). Both Metropolis-Hastings
and sequential Monte Carlo algorithms for estimating the models are available. Cayley, footrule,
Hamming, Kendall, Spearman, and Ulam distances are supported in the models. The rank data to be
analyzed can be in the form of complete rankings, top-k rankings, partially missing rankings, as well
as consistent and inconsistent pairwise preferences. Several functions for plotting and studying the
posterior distributions of parameters are provided. The package also provides functions for estimating
the partition function (normalizing constant) of the Mallows rank mo [...truncated...]
Author: Oystein Sorensen [aut, cre] ,
Waldir Leoncio [aut],
Valeria Vitelli [aut] ,
Marta Crispino [aut],
Qinghua Liu [aut],
Cristina Mollica [aut],
Luca Tardella [aut],
Anja Stein [aut]
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>
Diff between BayesMallows versions 2.0.1 dated 2024-01-25 and 2.1.0 dated 2024-03-13
BayesMallows-2.0.1/BayesMallows/src/leapandshift.cpp |only BayesMallows-2.0.1/BayesMallows/src/leapandshift.h |only BayesMallows-2.0.1/BayesMallows/src/pairwise_comparison_functions.cpp |only BayesMallows-2.0.1/BayesMallows/src/pairwise_comparisons.h |only BayesMallows-2.1.0/BayesMallows/DESCRIPTION | 8 BayesMallows-2.1.0/BayesMallows/MD5 | 303 +++++----- BayesMallows-2.1.0/BayesMallows/NAMESPACE | 15 BayesMallows-2.1.0/BayesMallows/NEWS.md | 39 + BayesMallows-2.1.0/BayesMallows/R/acceptance_ratio.R |only BayesMallows-2.1.0/BayesMallows/R/assess_convergence.R | 34 - BayesMallows-2.1.0/BayesMallows/R/assign_cluster.R | 13 BayesMallows-2.1.0/BayesMallows/R/burnin.R |only BayesMallows-2.1.0/BayesMallows/R/compute_consensus.R | 18 BayesMallows-2.1.0/BayesMallows/R/compute_mallows.R | 15 BayesMallows-2.1.0/BayesMallows/R/compute_mallows_sequentially.R |only BayesMallows-2.1.0/BayesMallows/R/compute_posterior_intervals.R | 21 BayesMallows-2.1.0/BayesMallows/R/estimate_partition_function.R | 16 BayesMallows-2.1.0/BayesMallows/R/generate_initial_ranking.R | 34 - 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BayesMallows-2.1.0/BayesMallows/inst/doc/SMC-Mallows.Rmd | 41 - BayesMallows-2.1.0/BayesMallows/inst/doc/SMC-Mallows.html | 71 +- BayesMallows-2.1.0/BayesMallows/inst/doc/parallel_chains.Rmd | 4 BayesMallows-2.1.0/BayesMallows/inst/doc/parallel_chains.html | 14 BayesMallows-2.1.0/BayesMallows/inst/examples/burnin_example.R |only BayesMallows-2.1.0/BayesMallows/inst/examples/compute_consensus_example.R | 10 BayesMallows-2.1.0/BayesMallows/inst/examples/compute_mallows_example.R | 9 BayesMallows-2.1.0/BayesMallows/inst/examples/compute_mallows_mixtures_example.R | 10 BayesMallows-2.1.0/BayesMallows/inst/examples/compute_mallows_sequentially_example.R |only BayesMallows-2.1.0/BayesMallows/inst/examples/compute_posterior_intervals_example.R | 7 BayesMallows-2.1.0/BayesMallows/inst/examples/get_acceptance_ratios_example.R |only BayesMallows-2.1.0/BayesMallows/inst/examples/label_switching_example.R | 2 BayesMallows-2.1.0/BayesMallows/inst/examples/plot.BayesMallows_example.R | 4 BayesMallows-2.1.0/BayesMallows/inst/examples/sample_mallows_example.R | 3 BayesMallows-2.1.0/BayesMallows/inst/examples/sample_prior_example.R |only BayesMallows-2.1.0/BayesMallows/inst/examples/update_mallows_example.R | 45 + BayesMallows-2.1.0/BayesMallows/man/BayesMallows-package.Rd | 1 BayesMallows-2.1.0/BayesMallows/man/assess_convergence.Rd | 2 BayesMallows-2.1.0/BayesMallows/man/assign_cluster.Rd | 12 BayesMallows-2.1.0/BayesMallows/man/burnin-set.Rd |only BayesMallows-2.1.0/BayesMallows/man/burnin.Rd |only BayesMallows-2.1.0/BayesMallows/man/compute_consensus.Rd | 16 BayesMallows-2.1.0/BayesMallows/man/compute_mallows.Rd | 15 BayesMallows-2.1.0/BayesMallows/man/compute_mallows_mixtures.Rd | 14 BayesMallows-2.1.0/BayesMallows/man/compute_mallows_sequentially.Rd |only BayesMallows-2.1.0/BayesMallows/man/compute_posterior_intervals.Rd | 14 BayesMallows-2.1.0/BayesMallows/man/figures/README-unnamed-chunk-8-1.png |binary BayesMallows-2.1.0/BayesMallows/man/get_acceptance_ratios.Rd |only BayesMallows-2.1.0/BayesMallows/man/heat_plot.Rd | 7 BayesMallows-2.1.0/BayesMallows/man/plot.BayesMallows.Rd | 13 BayesMallows-2.1.0/BayesMallows/man/plot.SMCMallows.Rd | 46 + BayesMallows-2.1.0/BayesMallows/man/plot_elbow.Rd | 27 BayesMallows-2.1.0/BayesMallows/man/plot_top_k.Rd | 7 BayesMallows-2.1.0/BayesMallows/man/predict_top_k.Rd | 8 BayesMallows-2.1.0/BayesMallows/man/print.BayesMallows.Rd | 1 BayesMallows-2.1.0/BayesMallows/man/sample_mallows.Rd | 3 BayesMallows-2.1.0/BayesMallows/man/sample_prior.Rd |only BayesMallows-2.1.0/BayesMallows/man/set_compute_options.Rd | 22 BayesMallows-2.1.0/BayesMallows/man/set_model_options.Rd | 3 BayesMallows-2.1.0/BayesMallows/man/set_priors.Rd | 12 BayesMallows-2.1.0/BayesMallows/man/set_smc_options.Rd | 58 + BayesMallows-2.1.0/BayesMallows/man/setup_rank_data.Rd | 33 - BayesMallows-2.1.0/BayesMallows/man/update_mallows.Rd | 74 ++ BayesMallows-2.1.0/BayesMallows/src/augmentation_class.cpp | 98 +-- BayesMallows-2.1.0/BayesMallows/src/classes.h | 65 +- BayesMallows-2.1.0/BayesMallows/src/clustering_class.cpp | 11 BayesMallows-2.1.0/BayesMallows/src/data_class.cpp | 13 BayesMallows-2.1.0/BayesMallows/src/distances.cpp | 98 +++ BayesMallows-2.1.0/BayesMallows/src/distances.h | 111 --- BayesMallows-2.1.0/BayesMallows/src/missing_data.h | 46 - BayesMallows-2.1.0/BayesMallows/src/missing_data_functions.cpp | 117 +-- BayesMallows-2.1.0/BayesMallows/src/parallel_utils.h |only BayesMallows-2.1.0/BayesMallows/src/parameters_class.cpp | 37 - BayesMallows-2.1.0/BayesMallows/src/particles.cpp | 168 +++-- BayesMallows-2.1.0/BayesMallows/src/particles.h | 15 BayesMallows-2.1.0/BayesMallows/src/partition_functions.cpp | 99 +++ BayesMallows-2.1.0/BayesMallows/src/partition_functions.h | 108 --- BayesMallows-2.1.0/BayesMallows/src/progress_reporter.cpp |only BayesMallows-2.1.0/BayesMallows/src/progress_reporter.h |only BayesMallows-2.1.0/BayesMallows/src/proposal_functions.cpp | 39 - 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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-11 0.2.6
Title: Standardize Plant Names According to World Flora Online
Taxonomic Backbone
Description: World Flora Online is an online flora of all known plants, available from <https://www.worldfloraonline.org/>. Methods are provided of matching a list of plant names (scientific names, taxonomic names, botanical names) against a static copy of the World Flora Online Taxonomic Backbone data that can be downloaded from the World Flora Online website. The World Flora Online Taxonomic Backbone is an updated version of The Plant List (<http://www.theplantlist.org/>), a working list of plant names that has become static since 2013.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between WorldFlora versions 1.14-1 dated 2024-01-09 and 1.14-2 dated 2024-03-13
DESCRIPTION | 8 +-- MD5 | 14 +++--- NAMESPACE | 1 R/WFO.prepare.R | 109 +++++++++++++++++++++++++++++++++++++++++++++++ R/WFO.synonyms.R | 67 +++++++++++++++------------- inst/ChangeLog | 12 +++++ man/WFO.prepare.Rd | 38 +++++++++++++++- man/vascular.families.Rd | 2 8 files changed, 206 insertions(+), 45 deletions(-)
Title: Single-Cell Correlation Based Cell Type Annotation
Description: Performing cell type annotation based on cell markers from a unified database. The approach utilizes correlation-based approach combined with association analysis using Fisher-exact and phyper statistical tests (Upton, Graham JG. (1992) <DOI:10.2307/2982890>).
Author: Mohamed Soudy [aut, cre],
Sophie LE BARS [aut],
Enrico Glaab [aut]
Maintainer: Mohamed Soudy <Mohmedsoudy2009@gmail.com>
Diff between sccca versions 0.1.0 dated 2024-03-01 and 0.1.1 dated 2024-03-13
DESCRIPTION | 10 +++++----- MD5 | 10 +++++++--- NAMESPACE | 10 ++++++++-- R/pipeline.R | 4 ++-- R/sctype.R |only man/correct_gene_symbols.Rd |only man/process_database.Rd |only man/sctype.Rd |only 8 files changed, 22 insertions(+), 12 deletions(-)
Title: Markdown Reference Manuals
Description: Native R only allows PDF exports of reference manuals.
The 'Rd2md' package converts the package documentation files into
markdown files and combines them into a markdown version of the package
reference manual.
Author: Julian Busch [aut, cre]
Maintainer: Julian Busch <jb@quants.ch>
Diff between Rd2md versions 0.0.5 dated 2021-02-01 and 1.0.0 dated 2024-03-13
Rd2md-0.0.5/Rd2md/R/Rd2markdown.R |only Rd2md-0.0.5/Rd2md/R/ReferenceManual.R |only Rd2md-0.0.5/Rd2md/R/parseRd.R |only Rd2md-0.0.5/Rd2md/R/parseTag.R |only Rd2md-0.0.5/Rd2md/inst/doc/Introduction.R |only Rd2md-0.0.5/Rd2md/inst/doc/Introduction.Rmd |only Rd2md-0.0.5/Rd2md/inst/doc/Introduction.html |only Rd2md-0.0.5/Rd2md/man/Rd2markdown-package.Rd |only Rd2md-0.0.5/Rd2md/man/Rd2markdown.Rd |only Rd2md-0.0.5/Rd2md/man/RdTags.Rd |only Rd2md-0.0.5/Rd2md/man/ReferenceManual.Rd |only Rd2md-0.0.5/Rd2md/man/fetchRdDB.Rd |only Rd2md-0.0.5/Rd2md/man/parseRd.Rd |only Rd2md-0.0.5/Rd2md/man/parseTag.Rd |only Rd2md-0.0.5/Rd2md/man/simpleCap.Rd |only Rd2md-0.0.5/Rd2md/man/stripWhite.Rd |only Rd2md-0.0.5/Rd2md/man/trim.Rd |only Rd2md-0.0.5/Rd2md/vignettes/Introduction.Rmd |only Rd2md-1.0.0/Rd2md/DESCRIPTION | 20 +- Rd2md-1.0.0/Rd2md/MD5 | 67 ++++-- Rd2md-1.0.0/Rd2md/NAMESPACE | 101 ++++++++++ Rd2md-1.0.0/Rd2md/NEWS | 11 + Rd2md-1.0.0/Rd2md/R/Rd2md-deprecated.R |only Rd2md-1.0.0/Rd2md/R/Rd2md-package.R | 28 -- Rd2md-1.0.0/Rd2md/R/as_markdown-formatters.R |only Rd2md-1.0.0/Rd2md/R/as_markdown-utils.R |only Rd2md-1.0.0/Rd2md/R/as_markdown.R |only Rd2md-1.0.0/Rd2md/R/flatten.R |only Rd2md-1.0.0/Rd2md/R/output_format.R |only Rd2md-1.0.0/Rd2md/R/rdfile-operations.R |only Rd2md-1.0.0/Rd2md/R/render_refman.R |only Rd2md-1.0.0/Rd2md/R/utils.R | 195 +++++++++++++------- Rd2md-1.0.0/Rd2md/README.md | 73 ++++++- Rd2md-1.0.0/Rd2md/build/vignette.rds |binary Rd2md-1.0.0/Rd2md/inst/doc/introduction.R |only Rd2md-1.0.0/Rd2md/inst/doc/introduction.Rmd |only Rd2md-1.0.0/Rd2md/inst/doc/introduction.pdf |only Rd2md-1.0.0/Rd2md/man/Rd2markdown-deprecated.Rd |only Rd2md-1.0.0/Rd2md/man/Rd2md-deprecated.Rd |only Rd2md-1.0.0/Rd2md/man/Rd2md-package.Rd | 3 Rd2md-1.0.0/Rd2md/man/ReferenceManual-deprecated.Rd |only Rd2md-1.0.0/Rd2md/man/as_markdown.Rd |only Rd2md-1.0.0/Rd2md/man/md_document.Rd |only Rd2md-1.0.0/Rd2md/man/output_format.Rd |only Rd2md-1.0.0/Rd2md/man/rd_str_to_md.Rd |only Rd2md-1.0.0/Rd2md/man/read_rdfile.Rd |only Rd2md-1.0.0/Rd2md/man/render_refman.Rd |only Rd2md-1.0.0/Rd2md/tests |only Rd2md-1.0.0/Rd2md/vignettes/introduction.Rmd |only 49 files changed, 361 insertions(+), 137 deletions(-)
Title: Procedures for Gaussian and Non Gaussian Geostatistical (Large)
Data Analysis
Description: Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) simulation and inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Covariance functions for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. See the URL for the papers associ [...truncated...]
Author: Moreno Bevilacqua [aut, cre] ,
Victor Morales-Onate [aut] ,
Christian Caamano-Carrillo [aut]
Maintainer: Moreno Bevilacqua <moreno.bevilacqua89@gmail.com>
Diff between GeoModels versions 1.1.7 dated 2024-02-19 and 1.1.8 dated 2024-03-13
DESCRIPTION | 8 - MD5 | 36 ++--- R/GeoCompositeLik2.R | 10 + R/GeoCovariogram.r | 60 ++------- R/GeoFit.r | 10 - R/GeoKrig.r | 3 R/GeoQQ.R | 90 ++++++------- R/GeoSim.r | 35 ++--- R/GeoSimapprox.r | 81 +++++------- R/GeoVariogram.r | 28 ++-- R/GeoWls.r | 2 R/Geovarestbootstrap.R | 8 - R/Utility.r | 268 ++++++++++++++++++----------------------- src/CompositeLikelihood2.c | 30 ++++ src/CompositeLikelihoodCond2.c | 33 +++++ src/CorrelationFunction.c | 6 src/Distributions.c | 16 ++ src/GeoModels_init.c | 8 + src/header.h | 3 19 files changed, 390 insertions(+), 345 deletions(-)
Title: QTL Mapping and Hotspots Detection
Description: For QTL mapping, this package comprises several functions designed to execute diverse
tasks, such as simulating or analyzing data, calculating significance thresholds, and
visualizing QTL mapping results. The single-QTL or multiple-QTL method, which enables
the fitting and comparison of various statistical models, is employed to analyze the
data for estimating QTL parameters. The models encompass linear regression, permutation
tests, normal mixture models, and truncated normal mixture models. The Gaussian stochastic
process is utilized to compute significance thresholds for QTL detection on a genetic
linkage map within experimental populations. Two types of data, complete genotyping, and
selective genotyping data from various experimental populations, including backcross, F2,
recombinant inbred (RI) populations, and advanced intercrossed (AI) populations, are
considered in the QTL mapping analysis. For QTL hotspot detection, statistical methods can
be developed based on either utilizin [...truncated...]
Author: Ping-Yuan Chung [cre],
Chen-Hung Kao [aut],
Y.-T. Guo [aut],
H.-N. Ho [aut],
H.-I. Lee [aut],
P.-Y. Wu [aut],
M.-H. Yang [aut],
M.-H. Zeng [aut]
Maintainer: Ping-Yuan Chung <pychung@webmail.stat.sinica.edu.tw>
Diff between QTLEMM versions 1.5.1 dated 2024-02-29 and 1.5.2 dated 2024-03-13
DESCRIPTION | 6 ++-- MD5 | 66 +++++++++++++++++++++++++-------------------------- R/D.make.R | 4 +-- R/EM.MIM.R | 4 +-- R/EM.MIM2.R | 6 ++-- R/EM.MIMv.R | 4 +-- R/EQF.permu.R | 2 - R/EQF.plot.R | 2 - R/IM.search.R | 6 ++-- R/IM.search2.R | 8 +++--- R/LOD.QTLdetect.R | 2 - R/LRTthre.R | 2 - R/MIM.points.R | 4 +-- R/MIM.points2.R | 6 ++-- R/MIM.search.R | 4 +-- R/MIM.search2.R | 6 ++-- R/Q.make.R | 4 +-- R/Qhot.R | 2 - man/D.make.Rd | 4 +-- man/EM.MIM.Rd | 4 +-- man/EM.MIM2.Rd | 6 ++-- man/EM.MIMv.Rd | 4 +-- man/EQF.permu.Rd | 2 - man/EQF.plot.Rd | 2 - man/IM.search.Rd | 6 ++-- man/IM.search2.Rd | 8 +++--- man/LOD.QTLdetect.Rd | 2 - man/LRTthre.Rd | 2 - man/MIM.points.Rd | 4 +-- man/MIM.points2.Rd | 6 ++-- man/MIM.search.Rd | 4 +-- man/MIM.search2.Rd | 6 ++-- man/Q.make.Rd | 4 +-- man/Qhot.Rd | 2 - 34 files changed, 102 insertions(+), 102 deletions(-)
Title: Recommended Learners for 'mlr3'
Description: Recommended Learners for 'mlr3'. Extends 'mlr3'
with interfaces to essential machine learning packages on
CRAN. This includes, but is not limited to: (penalized) linear and
logistic regression, linear and quadratic discriminant analysis,
k-nearest neighbors, naive Bayes, support vector machines, and
gradient boosting.
Author: Michel Lang [cre, aut] ,
Quay Au [aut] ,
Stefan Coors [aut] ,
Patrick Schratz [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3learners versions 0.5.8 dated 2023-12-21 and 0.6.0 dated 2024-03-13
DESCRIPTION | 10 +++--- MD5 | 42 +++++++++++++-------------- NAMESPACE | 2 + NEWS.md | 4 ++ R/LearnerClassifCVGlmnet.R | 3 - R/LearnerClassifGlmnet.R | 3 - R/LearnerClassifLDA.R | 3 - R/LearnerClassifNnet.R | 2 - R/LearnerClassifQDA.R | 3 - R/LearnerClassifRanger.R | 7 +--- R/LearnerClassifSVM.R | 24 ++++++++------- R/LearnerClassifXgboost.R | 56 +++++++++++++++---------------------- R/LearnerRegrCVGlmnet.R | 6 +-- R/LearnerRegrGlmnet.R | 6 +-- R/LearnerRegrKM.R | 6 +-- R/LearnerRegrNnet.R | 2 - R/LearnerRegrRanger.R | 15 ++------- R/LearnerRegrSVM.R | 19 ++++-------- R/LearnerRegrXgboost.R | 56 ++++++++++++++++--------------------- man/mlr_learners_classif.nnet.Rd | 2 - man/mlr_learners_classif.ranger.Rd | 2 - man/mlr_learners_regr.nnet.Rd | 2 - 22 files changed, 122 insertions(+), 153 deletions(-)
Title: Linguistic Typology and Mapping
Description: Provides R with the Glottolog database <https://glottolog.org/> and some more abilities for purposes of linguistic mapping. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <https://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://docs.ropensci.org/lingtypology/> and package vignette. Maps created by this package can be used both for the investigation and linguistic teaching. In addition, package provides an ability to download data from typological databases such as WALS, AUTOTYP and some others and to create your own database website.
Author: George Moroz [aut, cre] ,
Kirill Koncha [ctb] ,
Mikhail Leonov [ctb],
Anna Smirnova [ctb],
Ekaterina Zalivina [ctb]
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between lingtypology versions 1.1.16 dated 2024-02-04 and 1.1.17 dated 2024-03-13
DESCRIPTION | 8 - MD5 | 104 ++++++++++++------------- NEWS | 13 +-- R/area.lang.R | 4 R/circassian.R | 2 R/glottolog.R | 10 +- R/gltc.lang.R | 4 R/is.glottolog.R | 7 - R/iso.lang.R | 4 R/lat.lang.R | 8 - R/long.lang.R | 10 +- R/map.feature.R | 2 R/url.lang.R | 2 R/zzz.r | 2 build/vignette.rds |binary data/circassian.RData |binary data/glottolog.RData |binary inst/doc/lingtypology_creating_maps.R | 18 ++-- inst/doc/lingtypology_creating_maps.Rmd | 18 ++-- inst/doc/lingtypology_creating_maps.html | 22 ++--- inst/doc/lingtypology_db_API.html | 4 inst/doc/lingtypology_dplyr.R | 4 inst/doc/lingtypology_dplyr.Rmd | 4 inst/doc/lingtypology_dplyr.html | 8 - inst/doc/lingtypology_glottolog_functions.R | 12 +- inst/doc/lingtypology_glottolog_functions.Rmd | 12 +- inst/doc/lingtypology_glottolog_functions.html | 50 ++++++------ inst/doc/lingtypology_intro.html | 4 man/area.lang.Rd | 4 man/circassian.Rd | 2 man/glottolog.Rd | 10 +- man/gltc.lang.Rd | 4 man/is.glottolog.Rd | 7 - man/iso.lang.Rd | 4 man/lat.lang.Rd | 8 - man/long.lang.Rd | 10 +- man/map.feature.Rd | 2 man/url.lang.Rd | 2 tests/testthat/test-area-lang.R | 4 tests/testthat/test-glottolog-database.R | 10 +- tests/testthat/test-gltc-lang.R | 8 - tests/testthat/test-iso-lang.R | 8 - tests/testthat/test-lang-aff.R | 2 tests/testthat/test-lang-gltc.R | 6 - tests/testthat/test-lang-iso.R | 6 - tests/testthat/test-lat-lang.R | 8 - tests/testthat/test-level.lang.R | 6 - tests/testthat/test-long-lang.R | 6 - tests/testthat/test-mapfeature.R | 36 ++++---- tests/testthat/test-url-lang.R | 6 - vignettes/lingtypology_creating_maps.Rmd | 18 ++-- vignettes/lingtypology_dplyr.Rmd | 4 vignettes/lingtypology_glottolog_functions.Rmd | 12 +- 53 files changed, 268 insertions(+), 261 deletions(-)
Title: Genomic Annotation in Livestock for Positional Candidate LOci
Description: The accurate annotation of genes and Quantitative Trait Loci (QTLs) located within candidate markers and/or regions (haplotypes, windows, CNVs, etc) is a crucial step the most common genomic analyses performed in livestock, such as Genome-Wide Association Studies or transcriptomics. The Genomic Annotation in Livestock for positional candidate LOci (GALLO) is an R package designed to provide an intuitive and straightforward environment to annotate positional candidate genes and QTLs from high-throughput genetic studies in livestock. Moreover, GALLO allows the graphical visualization of gene and QTL annotation results, data comparison among different grouping factors (e.g., methods, breeds, tissues, statistical models, studies, etc.), and QTL enrichment in different livestock species including cattle, pigs, sheep, and chicken, among others.
Author: Pablo Fonseca [aut, cre],
Aroa Suarez-Vega [aut],
Gabriele Marras [aut],
Angela Canovas [aut]
Maintainer: Pablo Fonseca <pfonseca@uoguelph.ca>
Diff between GALLO versions 1.3 dated 2021-11-09 and 1.4 dated 2024-03-13
DESCRIPTION | 15 MD5 | 76 NAMESPACE | 28 NEWS | 69 R/NetCen.R |only R/NetVis.R |only R/Nmarkers_SimpleM.R |only R/Nseg_chr.R |only R/PCA_Meff.R |only R/PleioChiTest.R |only R/QTLenrich_plot.R | 68 R/QTLmarkers.R | 56 R/QTLwindows.R | 56 R/WZ_ld.R |only R/find_genes_qtls_around_markers.R | 148 R/find_markers_genes.R |only R/gene_pval.R |only R/import_gff_gtf.R | 89 R/inferCut.R |only R/meta_LD.R |only R/qtl_enrich.R | 143 R/splitQTL_comment.R | 108 R/sub_qtlEnrich_chrom.R | 85 R/sub_qtlEnrich_geno.R | 73 README.md | 118 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 32 inst/doc/GALLO.R | 382 - inst/doc/GALLO.html | 7029 +++++++++++++++++----------------- man/NetCen.Rd |only man/NetVis.Rd |only man/Nmarkers_SimpleM.Rd |only man/Nseg_chr.Rd |only man/PCA_Meff.Rd |only man/PleioChiTest.Rd |only man/QTLenrich_plot.Rd | 15 man/QTLmarkers.Rd | 4 man/QTLwindows.Rd | 4 man/WZ_ld.Rd |only man/find_genes_qtls_around_markers.Rd | 4 man/find_markers_genes.Rd |only man/gene_pval.Rd |only man/inferCut.Rd |only man/meta_LD.Rd |only man/qtl_enrich.Rd | 2 man/splitQTL_comment.Rd | 4 vignettes/Exterior.png |only vignettes/Health.png |only vignettes/Meat_and_Carcass.png |only vignettes/Milk.png |only vignettes/Production.png |only vignettes/Reproduction.png |only 53 files changed, 4494 insertions(+), 4114 deletions(-)
Title: Biological Geometries
Description: Is used to simulate and fit biological geometries. 'biogeom' incorporates several novel universal parametric equations that can generate the profiles of bird eggs, flowers, linear and lanceolate leaves, seeds, starfish, and tree-rings (Gielis (2003) <doi:10.3732/ajb.90.3.333>; Shi et al. (2020) <doi:10.3390/sym12040645>), three growth-rate curves representing the ontogenetic growth trajectories of animals and plants against time, and the axially symmetrical and integral forms of all these functions (Shi et al. (2017) <doi:10.1016/j.ecolmodel.2017.01.012>; Shi et al. (2021) <doi:10.3390/sym13081524>). The optimization method proposed by Nelder and Mead (1965) <doi:10.1093/comjnl/7.4.308> was used to estimate model parameters. 'biogeom' includes several real data sets of the boundary coordinates of natural shapes, including avian eggs, fruit, lanceolate and ovate leaves, tree rings, seeds, and sea stars,and can be potentially applied to other natural shapes. [...truncated...]
Author: Peijian Shi [aut, cre],
Johan Gielis [aut],
Brady K. Quinn [aut]
Maintainer: Peijian Shi <pjshi@njfu.edu.cn>
Diff between biogeom versions 1.4.1 dated 2024-01-09 and 1.4.2 dated 2024-03-13
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/fitLorenz.R | 37 +++++++++++++++++++++++++++---------- build/partial.rdb |binary man/DETE.Rd | 2 +- 5 files changed, 37 insertions(+), 20 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and a R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut, cre] ,
Mark Raasveldt [aut] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrochers [cph],
Victor Z [...truncated...]
Maintainer: Hannes Muehleisen <hannes@cwi.nl>
Diff between duckdb versions 0.9.2-1 dated 2023-11-28 and 0.10.0 dated 2024-03-13
duckdb-0.10.0/duckdb/DESCRIPTION | 10 duckdb-0.10.0/duckdb/MD5 | 2225 duckdb-0.10.0/duckdb/NAMESPACE | 2 duckdb-0.10.0/duckdb/NEWS.md |only duckdb-0.10.0/duckdb/R/Driver.R | 5 duckdb-0.10.0/duckdb/R/backend-dbplyr__duckdb_connection.R | 49 duckdb-0.10.0/duckdb/R/cpp11.R | 4 duckdb-0.10.0/duckdb/R/dbConnect__duckdb_driver.R | 15 duckdb-0.10.0/duckdb/R/dbQuoteIdentifier__duckdb_connection.R | 2 duckdb-0.10.0/duckdb/R/dbWriteTable__duckdb_connection_character_data.frame.R | 4 duckdb-0.10.0/duckdb/R/duckdb.R | 12 duckdb-0.10.0/duckdb/R/relational.R | 2 duckdb-0.10.0/duckdb/README.md | 12 duckdb-0.10.0/duckdb/man/backend-duckdb.Rd | 25 duckdb-0.10.0/duckdb/man/duckdb-package.Rd | 52 duckdb-0.10.0/duckdb/man/duckdb_connection-class.Rd | 12 duckdb-0.10.0/duckdb/man/duckdb_result-class.Rd | 5 duckdb-0.10.0/duckdb/man/figures |only duckdb-0.10.0/duckdb/src/Makevars | 2 duckdb-0.10.0/duckdb/src/Makevars.win | 4 duckdb-0.10.0/duckdb/src/cpp11.cpp | 9 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/column_reader.cpp | 71 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/column_writer.cpp | 35 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/include/column_reader.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/include/decode_utils.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/include/parquet_crypto.hpp |only duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/include/parquet_dbp_decoder.hpp | 7 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/include/parquet_decimal_utils.hpp | 19 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/include/parquet_metadata.hpp | 10 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/include/parquet_reader.hpp | 40 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/include/parquet_statistics.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/include/parquet_timestamp.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/include/parquet_writer.hpp | 22 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/parquet_crypto.cpp |only duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/parquet_extension.cpp | 278 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/parquet_metadata.cpp | 220 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp | 140 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/parquet_statistics.cpp | 105 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/parquet_timestamp.cpp | 23 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/parquet_writer.cpp | 72 duckdb-0.10.0/duckdb/src/duckdb/extension/parquet/serialize_parquet.cpp | 60 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog.cpp | 48 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_entry.cpp | 29 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_entry/column_dependency_manager.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_entry/dependency |only duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_entry/duck_index_entry.cpp | 45 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_entry/duck_schema_entry.cpp | 28 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_entry/duck_table_entry.cpp | 143 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_entry/index_catalog_entry.cpp | 50 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_entry/macro_catalog_entry.cpp | 16 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_entry/schema_catalog_entry.cpp | 13 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_entry/sequence_catalog_entry.cpp | 102 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 21 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_entry/type_catalog_entry.cpp | 40 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_entry/view_catalog_entry.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_set.cpp | 707 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/catalog_transaction.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/default/default_functions.cpp | 17 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/default/default_schemas.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/default/default_views.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/dependency_catalog_set.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/catalog/dependency_manager.cpp | 628 duckdb-0.10.0/duckdb/src/duckdb/src/catalog/duck_catalog.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/common/adbc/adbc.cpp | 124 duckdb-0.10.0/duckdb/src/duckdb/src/common/adbc/driver_manager.cpp | 1369 duckdb-0.10.0/duckdb/src/duckdb/src/common/arrow/arrow_wrapper.cpp | 29 duckdb-0.10.0/duckdb/src/duckdb/src/common/bind_helpers.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/common/box_renderer.cpp | 53 duckdb-0.10.0/duckdb/src/duckdb/src/common/compressed_file_system.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/common/constants.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/common/enum_util.cpp | 629 duckdb-0.10.0/duckdb/src/duckdb/src/common/enums/catalog_type.cpp | 65 duckdb-0.10.0/duckdb/src/duckdb/src/common/enums/compression_type.cpp | 14 duckdb-0.10.0/duckdb/src/duckdb/src/common/enums/date_part_specifier.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/common/enums/expression_type.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/common/enums/file_compression_type.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/common/enums/join_type.cpp | 33 duckdb-0.10.0/duckdb/src/duckdb/src/common/enums/logical_operator_type.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/common/enums/optimizer_type.cpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/common/enums/physical_operator_type.cpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/common/enums/statement_type.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/common/error_data.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/common/exception |only duckdb-0.10.0/duckdb/src/duckdb/src/common/exception.cpp | 231 duckdb-0.10.0/duckdb/src/duckdb/src/common/exception_format_value.cpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/common/extra_type_info.cpp | 48 duckdb-0.10.0/duckdb/src/duckdb/src/common/file_system.cpp | 19 duckdb-0.10.0/duckdb/src/duckdb/src/common/gzip_file_system.cpp | 36 duckdb-0.10.0/duckdb/src/duckdb/src/common/hive_partitioning.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/common/http_state.cpp | 23 duckdb-0.10.0/duckdb/src/duckdb/src/common/local_file_system.cpp | 228 duckdb-0.10.0/duckdb/src/duckdb/src/common/multi_file_reader.cpp | 27 duckdb-0.10.0/duckdb/src/duckdb/src/common/operator/cast_operators.cpp | 811 duckdb-0.10.0/duckdb/src/duckdb/src/common/operator/convert_to_string.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/common/operator/string_cast.cpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/common/progress_bar/progress_bar.cpp | 73 duckdb-0.10.0/duckdb/src/duckdb/src/common/progress_bar/terminal_progress_bar_display.cpp | 17 duckdb-0.10.0/duckdb/src/duckdb/src/common/radix_partitioning.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/common/row_operations/row_aggregate.cpp | 3 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duckdb-0.10.0/duckdb/src/duckdb/src/common/sort/sorted_block.cpp | 13 duckdb-0.10.0/duckdb/src/duckdb/src/common/string_util.cpp | 326 duckdb-0.10.0/duckdb/src/duckdb/src/common/tree_renderer.cpp | 14 duckdb-0.10.0/duckdb/src/duckdb/src/common/types.cpp | 696 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/cast_helpers.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/column/column_data_allocator.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/column/column_data_collection.cpp | 58 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/column/column_data_collection_segment.cpp | 9 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/data_chunk.cpp | 9 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/date.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/hash.cpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/hugeint.cpp | 280 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/hyperloglog.cpp | 13 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/interval.cpp | 79 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/list_segment.cpp | 102 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/row/partitioned_tuple_data.cpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/row/row_data_collection.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/row/row_data_collection_scanner.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/row/tuple_data_allocator.cpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/row/tuple_data_collection.cpp | 66 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/row/tuple_data_scatter_gather.cpp | 458 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/time.cpp | 122 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/timestamp.cpp | 19 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/uhugeint.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/common/types/validity_mask.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/value.cpp | 210 duckdb-0.10.0/duckdb/src/duckdb/src/common/types/vector.cpp | 361 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200 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/bitagg.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/bitstring_agg.cpp | 27 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/entropy.cpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/kurtosis.cpp | 30 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/minmax.cpp | 103 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/aggregate/distributive/string_agg.cpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/aggregate/holistic/approximate_quantile.cpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/aggregate/holistic/mode.cpp | 135 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/aggregate/holistic/quantile.cpp | 774 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/aggregate/holistic/reservoir_quantile.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/aggregate/nested/histogram.cpp | 50 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/aggregate/nested/list.cpp | 71 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/function_list.cpp | 31 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/lambda_functions.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/array |only duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/blob/create_sort_key.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/blob/encode.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/date/current.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/date/date_part.cpp | 315 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/date/make_date.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/date/strftime.cpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/date/to_interval.cpp | 107 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/generic/error.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/generic/least.cpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/generic/stats.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/generic/system_functions.cpp | 23 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/list/array_slice.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_aggregates.cpp | 42 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_filter.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_reduce.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_sort.cpp | 101 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_transform.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/list/list_value.cpp | 23 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/map/map.cpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/map/map_entries.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/map/map_from_entries.cpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/math/numeric.cpp | 28 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/operators/bitwise.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/random/random.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/random/setseed.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/secret |only duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/string/bar.cpp | 13 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/string/format_bytes.cpp | 9 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/string/hex.cpp | 67 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/string/pad.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/string/parse_path.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/string/regexp_escape.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/string/string_split.cpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/struct/struct_insert.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/core_functions/scalar/struct/struct_pack.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/execution/aggregate_hashtable.cpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/execution/column_binding_resolver.cpp | 54 duckdb-0.10.0/duckdb/src/duckdb/src/execution/expression_executor.cpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/execution/expression_executor/execute_between.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/execution/expression_executor/execute_case.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/execution/expression_executor/execute_comparison.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/execution/index/art/art.cpp | 255 duckdb-0.10.0/duckdb/src/duckdb/src/execution/index/art/art_key.cpp | 47 duckdb-0.10.0/duckdb/src/duckdb/src/execution/index/fixed_size_allocator.cpp | 69 duckdb-0.10.0/duckdb/src/duckdb/src/execution/index/fixed_size_buffer.cpp | 22 duckdb-0.10.0/duckdb/src/duckdb/src/execution/index/index_type_set.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/index/unknown_index.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/join_hashtable.cpp | 331 duckdb-0.10.0/duckdb/src/duckdb/src/execution/nested_loop_join/nested_loop_join_inner.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/execution/nested_loop_join/nested_loop_join_mark.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/aggregate/aggregate_object.cpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_hash_aggregate.cpp | 118 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_ungrouped_aggregate.cpp | 90 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_window.cpp | 56 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/buffer_manager |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/csv_sniffer.cpp | 150 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/dialect_detection.cpp | 246 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/header_detection.cpp | 68 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/type_detection.cpp | 282 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/type_refinement.cpp | 143 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/type_replacement.cpp | 35 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/state_machine |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/table_function |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/csv_scanner/util |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/helper/physical_buffered_collector.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/helper/physical_create_secret.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/helper/physical_materialized_collector.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/helper/physical_pragma.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/helper/physical_reservoir_sample.cpp | 43 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/helper/physical_result_collector.cpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/helper/physical_transaction.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/helper/physical_vacuum.cpp | 35 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/join/perfect_hash_join_executor.cpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/join/physical_asof_join.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/join/physical_blockwise_nl_join.cpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/join/physical_comparison_join.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/join/physical_delim_join.cpp | 132 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 282 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/join/physical_iejoin.cpp | 39 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/join/physical_join.cpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/join/physical_left_delim_join.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/join/physical_nested_loop_join.cpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/join/physical_piecewise_merge_join.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/join/physical_range_join.cpp | 23 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/join/physical_right_delim_join.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_insert.cpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_database.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_to_file.cpp | 224 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_export.cpp | 108 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_insert.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/projection/physical_unnest.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/scan/physical_column_data_scan.cpp | 24 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/schema/physical_alter.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/schema/physical_attach.cpp | 104 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_art_index.cpp | 28 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_schema.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/schema/physical_drop.cpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/set/physical_cte.cpp | 134 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/set/physical_union.cpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_operator.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp | 173 duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_copy_database.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_copy_to_file.cpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_create_index.cpp | 16 duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_create_secret.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_create_table.cpp | 17 duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_cte.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_delim_join.cpp | 21 duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_positional_join.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_pragma.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_recursive_cte.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_set_operation.cpp | 102 duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_window.cpp | 89 duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan_generator.cpp | 9 duckdb-0.10.0/duckdb/src/duckdb/src/execution/radix_partitioned_hashtable.cpp | 195 duckdb-0.10.0/duckdb/src/duckdb/src/execution/reservoir_sample.cpp | 144 duckdb-0.10.0/duckdb/src/duckdb/src/execution/window_executor.cpp | 317 duckdb-0.10.0/duckdb/src/duckdb/src/execution/window_segment_tree.cpp | 1072 duckdb-0.10.0/duckdb/src/duckdb/src/function/aggregate/distributive/count.cpp | 34 duckdb-0.10.0/duckdb/src/duckdb/src/function/aggregate/distributive/first.cpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/function/aggregate/sorted_aggregate_function.cpp | 436 duckdb-0.10.0/duckdb/src/duckdb/src/function/cast/array_casts.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/function/cast/bit_cast.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/function/cast/cast_function_set.cpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/function/cast/decimal_cast.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/function/cast/default_casts.cpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/function/cast/list_casts.cpp | 157 duckdb-0.10.0/duckdb/src/duckdb/src/function/cast/numeric_casts.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/function/cast/string_cast.cpp | 100 duckdb-0.10.0/duckdb/src/duckdb/src/function/cast/struct_cast.cpp | 72 duckdb-0.10.0/duckdb/src/duckdb/src/function/cast/time_casts.cpp | 24 duckdb-0.10.0/duckdb/src/duckdb/src/function/cast/union/from_struct.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/function/cast/union_casts.cpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/function/cast/vector_cast_helpers.cpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/function/cast_rules.cpp | 228 duckdb-0.10.0/duckdb/src/duckdb/src/function/compression_config.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/function/function.cpp | 24 duckdb-0.10.0/duckdb/src/duckdb/src/function/function_binder.cpp | 109 duckdb-0.10.0/duckdb/src/duckdb/src/function/function_set.cpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/function/pragma/pragma_functions.cpp | 18 duckdb-0.10.0/duckdb/src/duckdb/src/function/pragma/pragma_queries.cpp | 72 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/compressed_materialization/compress_integral.cpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/list/contains_or_position.cpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/list/list_concat.cpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/list/list_extract.cpp | 17 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/list/list_resize.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/list/list_select.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/list/list_zip.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/nested_functions.cpp | 33 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/operators/add.cpp | 59 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/operators/arithmetic.cpp | 62 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/operators/multiply.cpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/operators/subtract.cpp | 23 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/sequence/nextval.cpp | 83 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/strftime_format.cpp | 261 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/string/caseconvert.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/string/concat.cpp | 22 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/string/length.cpp | 148 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/string/regexp.cpp | 54 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/struct/struct_extract.cpp | 79 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar/system/aggregate_export.cpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/function/scalar_function.cpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/arrow.cpp | 47 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/arrow/arrow_duck_schema.cpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/arrow_conversion.cpp | 583 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/copy_csv.cpp | 124 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/range.cpp | 9 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/read_csv.cpp | 866 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/read_file.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/function/table/sniff_csv.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_columns.cpp | 18 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_databases.cpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_dependencies.cpp | 22 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_functions.cpp | 81 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_indexes.cpp | 27 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_memory.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_optimizers.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_schemas.cpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_secrets.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_sequences.cpp | 18 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_settings.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_tables.cpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_types.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/duckdb_views.cpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/pragma_table_info.cpp | 230 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system/test_all_types.cpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/system_functions.cpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/table_scan.cpp | 160 duckdb-0.10.0/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 48 duckdb-0.10.0/duckdb/src/duckdb/src/function/table_function.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb.h | 714 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry.hpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/dependency |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_index_entry.hpp | 30 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_schema_entry.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_table_entry.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/index_catalog_entry.hpp | 24 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/list.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/scalar_macro_catalog_entry.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/schema_catalog_entry.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/sequence_catalog_entry.hpp | 37 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_catalog_entry.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_macro_catalog_entry.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/type_catalog_entry.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/view_catalog_entry.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_set.hpp | 90 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_transaction.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/default/builtin_types/types.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/dependency.hpp | 128 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_catalog_set.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_list.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_manager.hpp | 104 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/catalog/standard_entry.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/adbc/adbc-init.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/adbc/adbc.h | 1165 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/adbc/adbc.hpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/adbc/driver_manager.h | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/adbc/options.h |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/adbc/single_batch_array_stream.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow.hpp | 31 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow_wrapper.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/arrow/result_arrow_wrapper.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/bit_utils.hpp | 30 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/bitpacking.hpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/case_insensitive_map.hpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/constants.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enum_util.hpp | 94 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/catalog_type.hpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/compression_type.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/expression_type.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/index_constraint_type.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/join_type.hpp | 19 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/logical_operator_type.hpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/memory_tag.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/on_create_conflict.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/optimizer_type.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/pending_execution_result.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/physical_operator_type.hpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/statement_type.hpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/tableref_type.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/enums/wal_type.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/error_data.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/exception |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/exception.hpp | 218 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/exception_format_value.hpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/extra_type_info.hpp | 54 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/helper.hpp | 16 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/http_state.hpp | 22 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/hugeint.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/limits.hpp | 20 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/local_file_system.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/multi_file_reader.hpp | 9 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/numeric_utils.hpp | 19 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/operator/add.hpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/operator/cast_operators.hpp | 119 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/operator/comparison_operators.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/operator/convert_to_string.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/operator/decimal_cast_operators.hpp | 29 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/operator/double_cast_operator.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/operator/integer_cast_operator.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/operator/multiply.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/operator/numeric_cast.hpp | 136 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/operator/string_cast.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/operator/subtract.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/optional_idx.hpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/platform.h |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/progress_bar/display/terminal_progress_bar_display.hpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/progress_bar/progress_bar.hpp | 28 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/radix.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/row_operations/row_operations.hpp | 26 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/binary_deserializer.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/binary_serializer.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/deserializer.hpp | 47 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/serialization_traits.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/serializer.hpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/sort/comparators.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/sort/partition_state.hpp | 14 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/sort/sort.hpp | 81 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/sort/sorted_block.hpp | 78 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/string_util.hpp | 24 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/type_util.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types.hpp | 200 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/cast_helpers.hpp | 29 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/conflict_manager.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/data_chunk.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/date.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/datetime.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/hash.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/hugeint.hpp | 96 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/interval.hpp | 86 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/list_segment.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/row/partitioned_tuple_data.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/row/row_data_collection.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/row/tuple_data_collection.hpp | 48 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/row/tuple_data_states.hpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/string_type.hpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/time.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/timestamp.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/uhugeint.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/validity_mask.hpp | 28 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 31 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp | 20 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector_buffer.hpp | 23 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/uhugeint.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/aggregate_executor.hpp | 76 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/common/vector_size.hpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/distributive_functions.hpp | 31 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/core_functions/lambda_functions.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/array_functions.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/blob_functions.hpp | 9 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/date_functions.hpp | 44 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/list_functions.hpp | 42 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/secret_functions.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/string_functions.hpp | 58 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/core_functions/to_interval.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/aggregate_hashtable.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/executor.hpp | 24 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art.hpp | 53 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/index/fixed_size_allocator.hpp | 32 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/index/fixed_size_buffer.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/index/index_type.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/index/index_type_set.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/index/unknown_index.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/join_hashtable.hpp | 59 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/merge_sort_tree.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_hash_aggregate.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_window.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_batch_collector.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_buffered_collector.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_create_secret.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_pragma.hpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_reservoir_sample.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_blockwise_nl_join.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_delim_join.hpp | 23 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_hash_join.hpp | 19 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_iejoin.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_join.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_left_delim_join.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_nested_loop_join.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_piecewise_merge_join.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_range_join.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_right_delim_join.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_order.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_top_n.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_copy_database.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_copy_to_file.hpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_export.hpp | 14 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_column_data_scan.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_expression_scan.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_cte.hpp | 29 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_recursive_cte.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_union.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_plan_generator.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/radix_partitioned_hashtable.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/reservoir_sample.hpp | 50 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/task_error_manager.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/window_executor.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/window_segment_tree.hpp | 120 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate_function.hpp | 60 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate_state.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/built_in_functions.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/cast/bound_cast_data.hpp | 27 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/cast/cast_function_set.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/cast/default_casts.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/cast/vector_cast_helpers.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/compression/compression.hpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/copy_function.hpp | 20 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/function.hpp | 19 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/function_binder.hpp | 27 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/function_serialization.hpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/macro_function.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/pragma/pragma_functions.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/list/contains_or_position.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/nested_functions.hpp | 22 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/sequence_functions.hpp | 22 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/strftime_format.hpp | 18 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/scalar_function.hpp | 30 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/table/arrow.hpp | 38 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/table/arrow/arrow_duck_schema.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/table/list.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/table/range.hpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/table/read_csv.hpp | 30 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/table/system_functions.hpp | 20 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/table/table_scan.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/function/table_function.hpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/appender.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/attached_database.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/buffered_data |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/capi/capi_internal.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/capi/cast/generic.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/chunk_scan_state.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/chunk_scan_state/query_result.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/client_config.hpp | 18 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp | 45 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/client_context_state.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/client_data.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/config.hpp | 31 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/connection.hpp | 9 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/connection_manager.hpp | 41 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/database.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/database_manager.hpp | 46 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/database_path_and_type.hpp | 9 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/error_manager.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/extension_entries.hpp | 400 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/extension_helper.hpp | 58 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/extension_util.hpp | 9 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/materialized_query_result.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/pending_query_result.hpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/prepared_statement.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/prepared_statement_data.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/query_profiler.hpp | 32 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/query_result.hpp | 25 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/relation/read_csv_relation.hpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/relation/setop_relation.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/secret |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/settings.hpp | 65 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/main/stream_query_result.hpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/optimizer/deliminator.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_pushdown.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_node.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_relation.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/query_graph_manager.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/relation_statistics_helper.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parallel/event.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parallel/meta_pipeline.hpp | 36 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline.hpp | 20 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline_executor.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parallel/task.hpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parallel/task_scheduler.hpp | 14 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/base_expression.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/column_definition.hpp | 9 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/function_expression.hpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/lambda_expression.hpp | 25 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/lambdaref_expression.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/list.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/window_expression.hpp | 31 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_info.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_info.hpp | 49 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/attach_info.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/bound_pragma_info.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/comment_on_info.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_index_info.hpp | 43 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_info.hpp | 16 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_schema_info.hpp | 23 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_secret_info.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_table_info.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_type_info.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_view_info.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/drop_info.hpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/extra_drop_info.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/parse_info.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/pragma_info.hpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_expression.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parser_extension.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/qualified_name.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/query_error_context.hpp | 27 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/query_node/set_operation_node.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/copy_database_statement.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/list.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/set_statement.hpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/emptytableref.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/list.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/showref.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/tokens.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp | 23 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/bind_context.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp | 51 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_result_modifier.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/expression.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_cast_expression.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_comparison_expression.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_function_expression.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_lambda_expression.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_lambdaref_expression.hpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_window_expression.hpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder.hpp | 87 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/column_alias_binder.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/index_binder.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/order_binder.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/table_function_binder.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/filter/struct_filter.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/logical_tokens.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/list.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_comparison_join.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_copy_database.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_copy_to_file.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create_secret.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_cteref.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_pragma.hpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_recursive_cte.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_set_operation.hpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/parsed_data/bound_create_table_info.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/pragma_handler.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/query_node/bound_set_operation_node.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/subquery/flatten_dependent_join.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/subquery/rewrite_cte_scan.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/table_binding.hpp | 16 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/table_filter.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_dummytableref.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp | 14 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/buffer_pool.hpp | 29 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/temporary_file_information.hpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/row_group_writer.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/string_checkpoint_state.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/table_data_writer.hpp | 14 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint_manager.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_analyze.hpp | 110 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_compress.hpp | 239 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_scan.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_analyze.hpp | 114 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_compress.hpp | 189 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/data_table.hpp | 29 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/database_size.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/index.hpp | 82 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/index_storage_info.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/metadata/metadata_manager.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/object_cache.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/partial_block_manager.hpp | 18 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/segment/uncompressed.hpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/standard_buffer_manager.hpp | 34 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/array_stats.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/base_statistics.hpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/numeric_stats_union.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/storage_extension.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/storage_info.hpp | 73 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/storage_manager.hpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table/array_column_data.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data_checkpointer.hpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_segment.hpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table/data_table_info.hpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table/list_column_data.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group_collection.hpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table/scan_state.hpp | 13 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table/standard_column_data.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table/struct_column_data.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table/table_index_list.hpp | 28 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table/table_statistics.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/table_storage_info.hpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/temporary_memory_manager.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/storage/write_ahead_log.hpp | 68 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/transaction/duck_transaction.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/transaction/duck_transaction_manager.hpp | 9 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/transaction/local_storage.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/transaction/meta_transaction.hpp | 9 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/transaction/transaction_context.hpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/transaction/transaction_manager.hpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/verification/fetch_row_verifier.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/verification/statement_verifier.hpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/main/appender.cpp | 19 duckdb-0.10.0/duckdb/src/duckdb/src/main/attached_database.cpp | 36 duckdb-0.10.0/duckdb/src/duckdb/src/main/buffered_data |only duckdb-0.10.0/duckdb/src/duckdb/src/main/capi/appender-c.cpp | 45 duckdb-0.10.0/duckdb/src/duckdb/src/main/capi/arrow-c.cpp | 41 duckdb-0.10.0/duckdb/src/duckdb/src/main/capi/datetime-c.cpp | 22 duckdb-0.10.0/duckdb/src/duckdb/src/main/capi/duckdb-c.cpp | 18 duckdb-0.10.0/duckdb/src/duckdb/src/main/capi/duckdb_value-c.cpp | 68 duckdb-0.10.0/duckdb/src/duckdb/src/main/capi/helper-c.cpp | 78 duckdb-0.10.0/duckdb/src/duckdb/src/main/capi/hugeint-c.cpp | 23 duckdb-0.10.0/duckdb/src/duckdb/src/main/capi/logical_types-c.cpp | 30 duckdb-0.10.0/duckdb/src/duckdb/src/main/capi/pending-c.cpp | 52 duckdb-0.10.0/duckdb/src/duckdb/src/main/capi/prepared-c.cpp | 40 duckdb-0.10.0/duckdb/src/duckdb/src/main/capi/result-c.cpp | 57 duckdb-0.10.0/duckdb/src/duckdb/src/main/capi/table_function-c.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/main/capi/value-c.cpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/main/chunk_scan_state/query_result.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/main/client_context.cpp | 511 duckdb-0.10.0/duckdb/src/duckdb/src/main/client_data.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/main/client_verify.cpp | 34 duckdb-0.10.0/duckdb/src/duckdb/src/main/config.cpp | 47 duckdb-0.10.0/duckdb/src/duckdb/src/main/connection.cpp | 33 duckdb-0.10.0/duckdb/src/duckdb/src/main/connection_manager.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/main/database.cpp | 83 duckdb-0.10.0/duckdb/src/duckdb/src/main/database_manager.cpp | 114 duckdb-0.10.0/duckdb/src/duckdb/src/main/database_path_and_type.cpp | 35 duckdb-0.10.0/duckdb/src/duckdb/src/main/db_instance_cache.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/main/error_manager.cpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/main/extension/extension_alias.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/main/extension/extension_helper.cpp | 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duckdb-0.10.0/duckdb/src/duckdb/src/parser/transform/expression/transform_interval.cpp | 39 duckdb-0.10.0/duckdb/src/duckdb/src/parser/transform/expression/transform_is_null.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/parser/transform/expression/transform_lambda.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/parser/transform/expression/transform_multi_assign_reference.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/parser/transform/expression/transform_operator.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/parser/transform/expression/transform_positional_reference.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/parser/transform/expression/transform_subquery.cpp | 26 duckdb-0.10.0/duckdb/src/duckdb/src/parser/transform/helpers/nodetype_to_string.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/parser/transform/helpers/transform_cte.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/parser/transform/helpers/transform_typename.cpp | 33 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duckdb-0.10.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_pivot.cpp | 35 duckdb-0.10.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_showref.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_table_function.cpp | 28 duckdb-0.10.0/duckdb/src/duckdb/src/planner/binder/tableref/plan_cteref.cpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/planner/bound_result_modifier.cpp | 24 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression.cpp | 20 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression/bound_aggregate_expression.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression/bound_cast_expression.cpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression/bound_function_expression.cpp | 24 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression/bound_lambdaref_expression.cpp | 19 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression/bound_window_expression.cpp | 68 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression_binder.cpp | 76 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression_binder/base_select_binder.cpp | 11 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression_binder/check_binder.cpp | 17 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression_binder/column_alias_binder.cpp | 17 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression_binder/having_binder.cpp | 13 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression_binder/index_binder.cpp | 25 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression_binder/order_binder.cpp | 19 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression_binder/qualify_binder.cpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression_binder/table_function_binder.cpp | 23 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression_binder/where_binder.cpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/planner/expression_iterator.cpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/planner/filter/constant_filter.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/planner/filter/struct_filter.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/planner/joinside.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/planner/logical_operator.cpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/planner/operator/logical_copy_database.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/planner/operator/logical_copy_to_file.cpp | 17 duckdb-0.10.0/duckdb/src/duckdb/src/planner/operator/logical_create_table.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/planner/operator/logical_get.cpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/planner/operator/logical_join.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/planner/planner.cpp | 47 duckdb-0.10.0/duckdb/src/duckdb/src/planner/pragma_handler.cpp | 29 duckdb-0.10.0/duckdb/src/duckdb/src/planner/subquery/flatten_dependent_join.cpp | 105 duckdb-0.10.0/duckdb/src/duckdb/src/planner/subquery/rewrite_cte_scan.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/planner/table_binding.cpp | 26 duckdb-0.10.0/duckdb/src/duckdb/src/storage/buffer/block_handle.cpp | 22 duckdb-0.10.0/duckdb/src/duckdb/src/storage/buffer/block_manager.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/storage/buffer/buffer_pool.cpp | 34 duckdb-0.10.0/duckdb/src/duckdb/src/storage/buffer/buffer_pool_reservation.cpp | 7 duckdb-0.10.0/duckdb/src/duckdb/src/storage/buffer_manager.cpp | 17 duckdb-0.10.0/duckdb/src/duckdb/src/storage/checkpoint/row_group_writer.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/storage/checkpoint/table_data_writer.cpp | 22 duckdb-0.10.0/duckdb/src/duckdb/src/storage/checkpoint/write_overflow_strings_to_disk.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/storage/checkpoint_manager.cpp | 137 duckdb-0.10.0/duckdb/src/duckdb/src/storage/compression/alp |only duckdb-0.10.0/duckdb/src/duckdb/src/storage/compression/alprd.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/storage/compression/bitpacking.cpp | 139 duckdb-0.10.0/duckdb/src/duckdb/src/storage/compression/bitpacking_hugeint.cpp | 82 duckdb-0.10.0/duckdb/src/duckdb/src/storage/compression/dictionary_compression.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/storage/compression/fixed_size_uncompressed.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/storage/compression/fsst.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/storage/compression/numeric_constant.cpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/storage/compression/rle.cpp | 10 duckdb-0.10.0/duckdb/src/duckdb/src/storage/compression/string_uncompressed.cpp | 14 duckdb-0.10.0/duckdb/src/duckdb/src/storage/compression/uncompressed.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/storage/compression/validity_uncompressed.cpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/storage/data_table.cpp | 128 duckdb-0.10.0/duckdb/src/duckdb/src/storage/index.cpp | 34 duckdb-0.10.0/duckdb/src/duckdb/src/storage/local_storage.cpp | 55 duckdb-0.10.0/duckdb/src/duckdb/src/storage/metadata/metadata_manager.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/storage/partial_block_manager.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/storage/serialization/serialize_create_info.cpp | 13 duckdb-0.10.0/duckdb/src/duckdb/src/storage/serialization/serialize_expression.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/src/storage/serialization/serialize_extra_drop_info.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/storage/serialization/serialize_logical_operator.cpp | 24 duckdb-0.10.0/duckdb/src/duckdb/src/storage/serialization/serialize_macro_function.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/storage/serialization/serialize_nodes.cpp | 161 duckdb-0.10.0/duckdb/src/duckdb/src/storage/serialization/serialize_parse_info.cpp | 67 duckdb-0.10.0/duckdb/src/duckdb/src/storage/serialization/serialize_parsed_expression.cpp | 23 duckdb-0.10.0/duckdb/src/duckdb/src/storage/serialization/serialize_query_node.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/storage/serialization/serialize_storage.cpp | 35 duckdb-0.10.0/duckdb/src/duckdb/src/storage/serialization/serialize_table_filter.cpp | 19 duckdb-0.10.0/duckdb/src/duckdb/src/storage/serialization/serialize_tableref.cpp | 23 duckdb-0.10.0/duckdb/src/duckdb/src/storage/serialization/serialize_types.cpp | 50 duckdb-0.10.0/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp | 53 duckdb-0.10.0/duckdb/src/duckdb/src/storage/standard_buffer_manager.cpp | 85 duckdb-0.10.0/duckdb/src/duckdb/src/storage/statistics/array_stats.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/storage/statistics/base_statistics.cpp | 66 duckdb-0.10.0/duckdb/src/duckdb/src/storage/statistics/column_statistics.cpp | 1 duckdb-0.10.0/duckdb/src/duckdb/src/storage/statistics/distinct_statistics.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/storage/statistics/numeric_stats.cpp | 21 duckdb-0.10.0/duckdb/src/duckdb/src/storage/statistics/numeric_stats_union.cpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/storage/statistics/string_stats.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/storage/storage_info.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/src/storage/storage_manager.cpp | 69 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/array_column_data.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/chunk_info.cpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/column_checkpoint_state.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/column_data.cpp | 59 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/column_data_checkpointer.cpp | 15 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/column_segment.cpp | 46 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/list_column_data.cpp | 35 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/row_group.cpp | 94 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/row_group_collection.cpp | 415 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/row_version_manager.cpp | 3 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/scan_state.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/standard_column_data.cpp | 16 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/struct_column_data.cpp | 40 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/table_statistics.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table/update_segment.cpp | 20 duckdb-0.10.0/duckdb/src/duckdb/src/storage/table_index_list.cpp | 80 duckdb-0.10.0/duckdb/src/duckdb/src/storage/temporary_memory_manager.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/storage/wal_replay.cpp | 479 duckdb-0.10.0/duckdb/src/duckdb/src/storage/write_ahead_log.cpp | 294 duckdb-0.10.0/duckdb/src/duckdb/src/transaction/cleanup_state.cpp | 5 duckdb-0.10.0/duckdb/src/duckdb/src/transaction/commit_state.cpp | 152 duckdb-0.10.0/duckdb/src/duckdb/src/transaction/duck_transaction.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/src/transaction/duck_transaction_manager.cpp | 80 duckdb-0.10.0/duckdb/src/duckdb/src/transaction/meta_transaction.cpp | 60 duckdb-0.10.0/duckdb/src/duckdb/src/transaction/transaction_context.cpp | 27 duckdb-0.10.0/duckdb/src/duckdb/src/transaction/undo_buffer.cpp | 18 duckdb-0.10.0/duckdb/src/duckdb/src/verification/fetch_row_verifier.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/verification/prepared_statement_verifier.cpp | 12 duckdb-0.10.0/duckdb/src/duckdb/src/verification/statement_verifier.cpp | 11 duckdb-0.10.0/duckdb/src/duckdb/third_party/fast_float/fast_float/fast_float.h | 129 duckdb-0.10.0/duckdb/src/duckdb/third_party/fmt/include/fmt/format-inl.h | 2 duckdb-0.10.0/duckdb/src/duckdb/third_party/fmt/include/fmt/format.h | 6 duckdb-0.10.0/duckdb/src/duckdb/third_party/fmt/include/fmt/printf.h | 10 duckdb-0.10.0/duckdb/src/duckdb/third_party/libpg_query/include/nodes/nodes.hpp | 4 duckdb-0.10.0/duckdb/src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp | 101 duckdb-0.10.0/duckdb/src/duckdb/third_party/libpg_query/include/parser/gram.hpp | 1555 duckdb-0.10.0/duckdb/src/duckdb/third_party/libpg_query/include/parser/kwlist.hpp | 20 duckdb-0.10.0/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |48594 +++++----- duckdb-0.10.0/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_scan.cpp | 807 duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/aes.h | 641 duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/aes_alt.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/aria.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/aria_alt.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/camellia.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/camellia_alt.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/ccm.h | 2 duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/ccm_alt.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/chacha20.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/chachapoly.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/cipher.h | 248 duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/cmac.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/entropy.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/gcm.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/gcm_alt.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/mbedtls_config.h | 9 duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/nist_kw.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/timing.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls_wrapper.hpp | 41 duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/library/aes.cpp |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/library/aesni.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/library/aria.cpp |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/library/camellia.cpp |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/library/cipher.cpp |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/library/cipher_wrap.cpp |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/library/cipher_wrap.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/library/entropy.cpp |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/library/entropy_poll.cpp |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/library/entropy_poll.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/library/gcm.cpp |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/library/padlock.h |only duckdb-0.10.0/duckdb/src/duckdb/third_party/mbedtls/mbedtls_wrapper.cpp | 156 duckdb-0.10.0/duckdb/src/duckdb/third_party/pcg/pcg_uint128.hpp | 2 duckdb-0.10.0/duckdb/src/duckdb/third_party/skiplist |only duckdb-0.10.0/duckdb/src/duckdb/third_party/thrift/thrift/thrift-config.h | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_catalog.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/ub_src_catalog_catalog_entry_dependency.cpp |only duckdb-0.10.0/duckdb/src/duckdb/ub_src_common.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_common_exception.cpp |only duckdb-0.10.0/duckdb/src/duckdb/ub_src_common_types.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/ub_src_core_functions.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_core_functions_scalar_array.cpp |only duckdb-0.10.0/duckdb/src/duckdb/ub_src_core_functions_scalar_blob.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_core_functions_scalar_list.cpp | 10 duckdb-0.10.0/duckdb/src/duckdb/ub_src_core_functions_scalar_secret.cpp |only duckdb-0.10.0/duckdb/src/duckdb/ub_src_core_functions_scalar_string.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/ub_src_execution_index.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/ub_src_execution_operator_csv_scanner_buffer_manager.cpp |only duckdb-0.10.0/duckdb/src/duckdb/ub_src_execution_operator_csv_scanner_scanner.cpp |only duckdb-0.10.0/duckdb/src/duckdb/ub_src_execution_operator_csv_scanner_state_machine.cpp |only duckdb-0.10.0/duckdb/src/duckdb/ub_src_execution_operator_csv_scanner_table_function.cpp |only duckdb-0.10.0/duckdb/src/duckdb/ub_src_execution_operator_csv_scanner_util.cpp |only duckdb-0.10.0/duckdb/src/duckdb/ub_src_execution_operator_helper.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/ub_src_execution_operator_join.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/ub_src_execution_operator_persistent.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_execution_physical_plan.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/ub_src_function_cast.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_function_scalar_list.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/ub_src_function_table.cpp | 8 duckdb-0.10.0/duckdb/src/duckdb/ub_src_function_table_system.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/ub_src_main.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_main_buffered_data.cpp |only duckdb-0.10.0/duckdb/src/duckdb/ub_src_main_secret.cpp |only duckdb-0.10.0/duckdb/src/duckdb/ub_src_optimizer_pushdown.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_parser_expression.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_parser_parsed_data.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/ub_src_parser_statement.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/ub_src_parser_tableref.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_parser_transform_statement.cpp | 6 duckdb-0.10.0/duckdb/src/duckdb/ub_src_planner_binder_statement.cpp | 4 duckdb-0.10.0/duckdb/src/duckdb/ub_src_planner_binder_tableref.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_planner_filter.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_planner_operator.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_planner_subquery.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_storage.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_storage_compression.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_storage_compression_alp.cpp |only duckdb-0.10.0/duckdb/src/duckdb/ub_src_storage_serialization.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_storage_statistics.cpp | 2 duckdb-0.10.0/duckdb/src/duckdb/ub_src_storage_table.cpp | 2 duckdb-0.10.0/duckdb/src/include/rapi.hpp | 5 duckdb-0.10.0/duckdb/src/include/reltoaltrep.hpp | 6 duckdb-0.10.0/duckdb/src/include/sources.mk | 2 duckdb-0.10.0/duckdb/src/relational.cpp | 1 duckdb-0.10.0/duckdb/src/reltoaltrep.cpp | 30 duckdb-0.10.0/duckdb/src/statement.cpp | 6 duckdb-0.10.0/duckdb/src/transform.cpp | 18 duckdb-0.10.0/duckdb/src/types.cpp | 4 duckdb-0.10.0/duckdb/tests/testthat/_snaps/types.md | 7 duckdb-0.10.0/duckdb/tests/testthat/test-dbQuoteIdentifier__duckdb_connection.R | 4 duckdb-0.10.0/duckdb/tests/testthat/test-rel_api.R | 916 duckdb-0.10.0/duckdb/tests/testthat/test_backend-dbplyr__duckdb_connection.R | 40 duckdb-0.10.0/duckdb/tests/testthat/test_extension_path.R |only duckdb-0.10.0/duckdb/tests/testthat/test_list.R | 15 duckdb-0.10.0/duckdb/tests/testthat/test_parquet.R | 37 duckdb-0.10.0/duckdb/tests/testthat/test_read.R | 16 duckdb-0.10.0/duckdb/tests/testthat/test_relational.R | 28 duckdb-0.10.0/duckdb/tests/testthat/test_tbl__duckdb_connection.R | 72 duckdb-0.9.2-1/duckdb/src/duckdb/src/common/preserved_error.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/common/types/chunk_collection.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/core_functions/scalar/list/list_lambdas.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/execution/operator/csv_scanner/base_csv_reader.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/execution/operator/csv_scanner/buffered_csv_reader.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/execution/operator/csv_scanner/csv_buffer.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/execution/operator/csv_scanner/csv_buffer_manager.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/execution/operator/csv_scanner/csv_file_handle.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/execution/operator/csv_scanner/csv_reader_options.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/execution/operator/csv_scanner/csv_state_machine.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/execution/operator/csv_scanner/csv_state_machine_cache.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/execution/operator/csv_scanner/parallel_csv_reader.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/execution/operator/join/physical_index_join.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/execution/physical_plan/plan_show_select.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/function/table/pragma_detailed_profiling_output.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/function/table/pragma_last_profiling_output.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/include/duckdb/catalog/mapping_value.hpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/include/duckdb/common/enums/index_type.hpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/include/duckdb/common/preserved_error.hpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/include/duckdb/common/types/chunk_collection.hpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_index_join.hpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/csv |only duckdb-0.9.2-1/duckdb/src/duckdb/src/include/duckdb/parser/statement/show_statement.hpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_show.hpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/parser/statement/show_statement.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/src/planner/binder/statement/bind_show.cpp |only duckdb-0.9.2-1/duckdb/src/duckdb/ub_src_execution_operator_csv_scanner.cpp |only 1166 files changed, 59017 insertions(+), 38982 deletions(-)
Title: Population Assignment using Genetic, Non-Genetic or Integrated
Data in a Machine Learning Framework
Description: Use Monte-Carlo and K-fold cross-validation coupled with machine-
learning classification algorithms to perform population assignment, with
functionalities of evaluating discriminatory power of independent training
samples, identifying informative loci, reducing data dimensionality for genomic
data, integrating genetic and non-genetic data, and visualizing results.
Author: Kuan-Yu Chen [aut, cre], Elizabeth A. Marschall [aut], Michael
G. Sovic [aut], Anthony C. Fries [aut], H. Lisle Gibbs [aut], Stuart A. Ludsin
[aut]
Maintainer: Kuan-Yu (Alex) Chen <alexkychen@gmail.com>
Diff between assignPOP versions 1.2.4 dated 2021-10-27 and 1.3.0 dated 2024-03-13
assignPOP-1.2.4/assignPOP/README.md |only assignPOP-1.3.0/assignPOP/DESCRIPTION | 10 +++++----- assignPOP-1.3.0/assignPOP/MD5 | 11 +++++------ assignPOP-1.3.0/assignPOP/NAMESPACE | 1 + assignPOP-1.3.0/assignPOP/R/accuracy.plot.R | 12 ++++++++---- assignPOP-1.3.0/assignPOP/tests/testthat/test_accuracy.R | 4 ++-- assignPOP-1.3.0/assignPOP/tests/testthat/test_membership.R | 2 +- 7 files changed, 22 insertions(+), 18 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-27 0.2.3
2023-12-21 0.2.2
2023-11-27 0.2.1
2023-10-01 0.2.0
2023-08-17 0.1.15
2023-06-09 0.1.14
2023-05-20 0.1.13
2023-04-30 0.1.12
2023-02-09 0.1.11
2022-10-25 0.1.10
2022-10-09 0.1.9
2022-09-11 0.1.8
2022-08-29 0.1.7
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating
random and regular graphs, graph visualization, centrality methods and
much more.
Author: Gabor Csardi [aut] ,
Tamas Nepusz [aut] ,
Vincent Traag [aut] ,
Szabolcs Horvat [aut] ,
Fabio Zanini [aut] ,
Daniel Noom [aut],
Kirill Mueller [aut, cre] ,
Maelle Salmon [ctb],
Michael Antonov [ctb],
Chan Zuckerberg Initiative [fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between igraph versions 2.0.2 dated 2024-02-17 and 2.0.3 dated 2024-03-13
igraph-2.0.2/igraph/src/vendor/mini-gmp |only igraph-2.0.2/igraph/tests/testthat/test-are.connected.R |only igraph-2.0.3/igraph/DESCRIPTION | 8 igraph-2.0.3/igraph/MD5 | 304 +-- igraph-2.0.3/igraph/NAMESPACE | 1 igraph-2.0.3/igraph/NEWS.md | 42 igraph-2.0.3/igraph/R/aaa-auto.R | 45 igraph-2.0.3/igraph/R/attributes.R | 8 igraph-2.0.3/igraph/R/centrality.R | 2 igraph-2.0.3/igraph/R/community.R | 41 igraph-2.0.3/igraph/R/components.R | 1 igraph-2.0.3/igraph/R/conversion.R | 6 igraph-2.0.3/igraph/R/flow.R | 32 igraph-2.0.3/igraph/R/games.R | 9 igraph-2.0.3/igraph/R/iterators.R | 1 igraph-2.0.3/igraph/R/layout.R | 2 igraph-2.0.3/igraph/R/make.R | 4 igraph-2.0.3/igraph/R/operators.R | 4 igraph-2.0.3/igraph/R/plot.R | 3 igraph-2.0.3/igraph/R/socnet.R | 2 igraph-2.0.3/igraph/R/structure.info.R | 13 igraph-2.0.3/igraph/configure | 33 igraph-2.0.3/igraph/inst/doc/igraph.html | 60 igraph-2.0.3/igraph/inst/doc/igraph_ES.html | 60 igraph-2.0.3/igraph/man/are_adjacent.Rd | 3 igraph-2.0.3/igraph/man/articulation_points.Rd | 6 igraph-2.0.3/igraph/man/as.directed.Rd | 4 igraph-2.0.3/igraph/man/as_membership.Rd | 3 igraph-2.0.3/igraph/man/bipartite_mapping.Rd | 3 igraph-2.0.3/igraph/man/bipartite_projection.Rd | 3 igraph-2.0.3/igraph/man/cluster_edge_betweenness.Rd | 3 igraph-2.0.3/igraph/man/cluster_fast_greedy.Rd | 3 igraph-2.0.3/igraph/man/cluster_fluid_communities.Rd | 3 igraph-2.0.3/igraph/man/cluster_infomap.Rd | 3 igraph-2.0.3/igraph/man/cluster_label_prop.Rd | 3 igraph-2.0.3/igraph/man/cluster_leading_eigen.Rd | 3 igraph-2.0.3/igraph/man/cluster_leiden.Rd | 3 igraph-2.0.3/igraph/man/cluster_louvain.Rd | 3 igraph-2.0.3/igraph/man/cluster_optimal.Rd | 3 igraph-2.0.3/igraph/man/cluster_spinglass.Rd | 3 igraph-2.0.3/igraph/man/cluster_walktrap.Rd | 3 igraph-2.0.3/igraph/man/communities.Rd | 3 igraph-2.0.3/igraph/man/compare.Rd | 3 igraph-2.0.3/igraph/man/edge.Rd | 25 igraph-2.0.3/igraph/man/figures/logo.png |only igraph-2.0.3/igraph/man/groups.Rd | 3 igraph-2.0.3/igraph/man/igraph-es-attributes.Rd | 12 igraph-2.0.3/igraph/man/is.bipartite.Rd | 4 igraph-2.0.3/igraph/man/is_bipartite.Rd |only igraph-2.0.3/igraph/man/is_min_separator.Rd | 5 igraph-2.0.3/igraph/man/is_separator.Rd | 3 igraph-2.0.3/igraph/man/layout_with_graphopt.Rd | 2 igraph-2.0.3/igraph/man/make_bipartite_graph.Rd | 15 igraph-2.0.3/igraph/man/make_clusters.Rd | 3 igraph-2.0.3/igraph/man/min_st_separators.Rd | 33 igraph-2.0.3/igraph/man/modularity.igraph.Rd | 3 igraph-2.0.3/igraph/man/plot_dendrogram.communities.Rd | 3 igraph-2.0.3/igraph/man/rep.igraph.Rd | 25 igraph-2.0.3/igraph/man/reverse_edges.Rd | 25 igraph-2.0.3/igraph/man/rglplot.Rd | 3 igraph-2.0.3/igraph/man/sample_bipartite.Rd | 26 igraph-2.0.3/igraph/man/sample_degseq.Rd | 26 igraph-2.0.3/igraph/man/sample_gnm.Rd | 26 igraph-2.0.3/igraph/man/sample_gnp.Rd | 26 igraph-2.0.3/igraph/man/sample_grg.Rd | 26 igraph-2.0.3/igraph/man/sample_growing.Rd | 26 igraph-2.0.3/igraph/man/sample_pa.Rd | 26 igraph-2.0.3/igraph/man/sample_pa_age.Rd | 26 igraph-2.0.3/igraph/man/sample_smallworld.Rd | 26 igraph-2.0.3/igraph/man/split_join_distance.Rd | 3 igraph-2.0.3/igraph/man/strength.Rd | 2 igraph-2.0.3/igraph/man/vertex.Rd | 25 igraph-2.0.3/igraph/man/voronoi_cells.Rd |only igraph-2.0.3/igraph/src/Makevars.in | 8 igraph-2.0.3/igraph/src/Makevars.ucrt | 8 igraph-2.0.3/igraph/src/Makevars.win | 8 igraph-2.0.3/igraph/src/cpp11.cpp | 918 +++++----- igraph-2.0.3/igraph/src/mkfile.plan9 |only igraph-2.0.3/igraph/src/rinterface.c | 80 igraph-2.0.3/igraph/src/rinterface_extra.c | 19 igraph-2.0.3/igraph/src/sources-glpk.mk |only igraph-2.0.3/igraph/src/sources-mini-gmp.mk |only igraph-2.0.3/igraph/src/sources.mk | 2 igraph-2.0.3/igraph/src/vendor/cigraph/CHANGELOG.md | 35 igraph-2.0.3/igraph/src/vendor/cigraph/CONTRIBUTING.md | 3 igraph-2.0.3/igraph/src/vendor/cigraph/CONTRIBUTORS.md | 2 igraph-2.0.3/igraph/src/vendor/cigraph/CONTRIBUTORS.txt | 2 igraph-2.0.3/igraph/src/vendor/cigraph/include/igraph_community.h | 2 igraph-2.0.3/igraph/src/vendor/cigraph/include/igraph_interface.h | 1 igraph-2.0.3/igraph/src/vendor/cigraph/include/igraph_operators.h | 2 igraph-2.0.3/igraph/src/vendor/cigraph/include/igraph_structural.h | 4 igraph-2.0.3/igraph/src/vendor/cigraph/interfaces/functions.yaml | 13 igraph-2.0.3/igraph/src/vendor/cigraph/src/CMakeLists.txt | 4 igraph-2.0.3/igraph/src/vendor/cigraph/src/centrality/eigenvector.c | 4 igraph-2.0.3/igraph/src/vendor/cigraph/src/cliques/cliques.c | 28 igraph-2.0.3/igraph/src/vendor/cigraph/src/cliques/maximal_cliques.c | 7 igraph-2.0.3/igraph/src/vendor/cigraph/src/community/community_misc.c | 2 igraph-2.0.3/igraph/src/vendor/cigraph/src/community/edge_betweenness.c | 24 igraph-2.0.3/igraph/src/vendor/cigraph/src/community/fast_modularity.c | 2 igraph-2.0.3/igraph/src/vendor/cigraph/src/connectivity/components.c | 14 igraph-2.0.3/igraph/src/vendor/cigraph/src/connectivity/separators.c | 492 +++-- igraph-2.0.3/igraph/src/vendor/cigraph/src/constructors/linegraph.c | 41 igraph-2.0.3/igraph/src/vendor/cigraph/src/core/sparsemat.c | 10 igraph-2.0.3/igraph/src/vendor/cigraph/src/core/trie.c | 17 igraph-2.0.3/igraph/src/vendor/cigraph/src/flow/flow.c | 6 igraph-2.0.3/igraph/src/vendor/cigraph/src/flow/st-cuts.c | 23 igraph-2.0.3/igraph/src/vendor/cigraph/src/graph/adjlist.c | 8 igraph-2.0.3/igraph/src/vendor/cigraph/src/graph/basic_query.c | 33 igraph-2.0.3/igraph/src/vendor/cigraph/src/graph/caching.c | 29 igraph-2.0.3/igraph/src/vendor/cigraph/src/graph/cattributes.c | 38 igraph-2.0.3/igraph/src/vendor/cigraph/src/graph/type_indexededgelist.c | 9 igraph-2.0.3/igraph/src/vendor/cigraph/src/io/dl.c | 10 igraph-2.0.3/igraph/src/vendor/cigraph/src/io/dot.c | 4 igraph-2.0.3/igraph/src/vendor/cigraph/src/io/gml.c | 10 igraph-2.0.3/igraph/src/vendor/cigraph/src/io/graphml.c | 131 - igraph-2.0.3/igraph/src/vendor/cigraph/src/io/lgl.c | 65 igraph-2.0.3/igraph/src/vendor/cigraph/src/io/ncol.c | 39 igraph-2.0.3/igraph/src/vendor/cigraph/src/io/pajek.c | 10 igraph-2.0.3/igraph/src/vendor/cigraph/src/isomorphism/bliss.cc | 5 igraph-2.0.3/igraph/src/vendor/cigraph/src/isomorphism/lad.c | 9 igraph-2.0.3/igraph/src/vendor/cigraph/src/misc/bipartite.c | 2 igraph-2.0.3/igraph/src/vendor/cigraph/src/misc/coloring.c | 2 igraph-2.0.3/igraph/src/vendor/cigraph/src/misc/feedback_arc_set.c | 8 igraph-2.0.3/igraph/src/vendor/cigraph/src/misc/matching.c | 18 igraph-2.0.3/igraph/src/vendor/cigraph/src/operators/compose.c | 2 igraph-2.0.3/igraph/src/vendor/cigraph/src/operators/disjoint_union.c | 61 igraph-2.0.3/igraph/src/vendor/cigraph/src/operators/join.c |only igraph-2.0.3/igraph/src/vendor/cigraph/src/operators/rewire.c | 4 igraph-2.0.3/igraph/src/vendor/cigraph/src/operators/simplify.c | 6 igraph-2.0.3/igraph/src/vendor/cigraph/src/operators/subgraph.c | 25 igraph-2.0.3/igraph/src/vendor/cigraph/src/paths/sparsifier.c | 2 igraph-2.0.3/igraph/src/vendor/cigraph/src/paths/voronoi.c | 6 igraph-2.0.3/igraph/src/vendor/cigraph/src/properties/complete.c |only igraph-2.0.3/igraph/src/vendor/cigraph/src/properties/dag.c | 2 igraph-2.0.3/igraph/src/vendor/cigraph/src/properties/ecc.c | 2 igraph-2.0.3/igraph/src/vendor/cigraph/src/properties/loops.c | 2 igraph-2.0.3/igraph/src/vendor/cigraph/src/properties/multiplicity.c | 8 igraph-2.0.3/igraph/src/vendor/cigraph/src/properties/trees.c | 8 igraph-2.0.3/igraph/src/vendor/cigraph/src/random/random.c | 9 igraph-2.0.3/igraph/src/vendor/config.h | 1 igraph-2.0.3/igraph/src/vendor/igraph_version.h | 10 igraph-2.0.3/igraph/src/vendor/io/dl-parser.c | 116 - igraph-2.0.3/igraph/src/vendor/io/gml-parser.c | 34 igraph-2.0.3/igraph/src/vendor/io/lgl-parser.c | 16 igraph-2.0.3/igraph/src/vendor/io/ncol-parser.c | 16 igraph-2.0.3/igraph/src/vendor/io/pajek-lexer.c | 2 igraph-2.0.3/igraph/src/vendor/io/pajek-parser.c | 152 - igraph-2.0.3/igraph/src/vendor/io/parsers/dl-parser.h | 8 igraph-2.0.3/igraph/src/vendor/io/parsers/gml-parser.h | 8 igraph-2.0.3/igraph/src/vendor/io/parsers/lgl-parser.h | 8 igraph-2.0.3/igraph/src/vendor/io/parsers/ncol-parser.h | 8 igraph-2.0.3/igraph/src/vendor/io/parsers/pajek-parser.h | 8 igraph-2.0.3/igraph/tests/testthat/_snaps/minimal.st.separators.md |only igraph-2.0.3/igraph/tests/testthat/_snaps/old-data-type.md | 2 igraph-2.0.3/igraph/tests/testthat/_snaps/versions.md | 12 igraph-2.0.3/igraph/tests/testthat/test-are_adjacent.R |only igraph-2.0.3/igraph/tests/testthat/test-minimal.st.separators.R | 8 igraph-2.0.3/igraph/tests/testthat/test-plot.R | 12 igraph-2.0.3/igraph/tests/testthat/test-voronoi.R |only 159 files changed, 2102 insertions(+), 1837 deletions(-)
Title: Variational Bayesian Estimation for Diagnostic Classification
Models
Description: Enables computationally efficient parameters-estimation by variational Bayesian
methods for various diagnostic classification models (DCMs). DCMs are a class of discrete latent variable models
for classifying respondents into latent classes that typically represent distinct combinations of skills they possess.
Recently, to meet the growing need of large-scale diagnostic measurement in the field of educational, psychological, and psychiatric measurements,
variational Bayesian inference has been developed as a computationally efficient alternative to the Markov chain Monte Carlo methods,
e.g., Yamaguchi and Okada (2020a) <doi:10.1007/s11336-020-09739-w>, Yamaguchi and Okada (2020b) <doi:10.3102/1076998620911934>,
Yamaguchi (2020) <doi:10.1007/s41237-020-00104-w>, Oka and Okada (2023) <doi:10.1007/s11336-022-09884-4>, and Yamaguchi and Martinez (2023) <doi:10.1111/bmsp.12308>.
To facilitate their applications, 'variationalDCM' is developed to provide a collec [...truncated...]
Author: Keiichiro Hijikata [aut, cre],
Motonori Oka [aut] ,
Kazuhiro Yamaguchi [aut] ,
Kensuke Okada [aut]
Maintainer: Keiichiro Hijikata <k.hijikata.1120@outlook.jp>
Diff between variationalDCM versions 1.0.0 dated 2023-11-08 and 2.0.0 dated 2024-03-13
variationalDCM-1.0.0/variationalDCM/R/dina_vb.R |only variationalDCM-1.0.0/variationalDCM/R/hmdcm_vb.R |only variationalDCM-1.0.0/variationalDCM/R/mcdina_vb.R |only variationalDCM-1.0.0/variationalDCM/R/satu_dcm_vb.R |only variationalDCM-1.0.0/variationalDCM/man/dina.Rd |only variationalDCM-1.0.0/variationalDCM/man/dino.Rd |only variationalDCM-1.0.0/variationalDCM/man/hm_dcm.Rd |only variationalDCM-1.0.0/variationalDCM/man/hmdcm_data_gen.Rd |only variationalDCM-1.0.0/variationalDCM/man/mc_dina.Rd |only variationalDCM-1.0.0/variationalDCM/man/satu_dcm.Rd |only variationalDCM-2.0.0/variationalDCM/DESCRIPTION | 10 variationalDCM-2.0.0/variationalDCM/MD5 | 38 - variationalDCM-2.0.0/variationalDCM/NAMESPACE | 9 variationalDCM-2.0.0/variationalDCM/R/dina.R |only variationalDCM-2.0.0/variationalDCM/R/dino.R | 83 -- variationalDCM-2.0.0/variationalDCM/R/hm_dcm.R |only variationalDCM-2.0.0/variationalDCM/R/mc_dina.R |only variationalDCM-2.0.0/variationalDCM/R/satu_dcm.R |only variationalDCM-2.0.0/variationalDCM/R/summary.R |only variationalDCM-2.0.0/variationalDCM/R/variationalDCM.R |only variationalDCM-2.0.0/variationalDCM/README.md | 2 variationalDCM-2.0.0/variationalDCM/inst/doc/my-vignette.R | 27 variationalDCM-2.0.0/variationalDCM/inst/doc/my-vignette.Rmd | 85 ++ variationalDCM-2.0.0/variationalDCM/inst/doc/my-vignette.html | 295 +++++++--- variationalDCM-2.0.0/variationalDCM/man/dina_data_gen.Rd | 6 variationalDCM-2.0.0/variationalDCM/man/hm_dcm_data_gen.Rd |only variationalDCM-2.0.0/variationalDCM/man/mc_dina_data_gen.Rd | 6 variationalDCM-2.0.0/variationalDCM/man/variationalDCM.Rd |only variationalDCM-2.0.0/variationalDCM/vignettes/my-vignette.Rmd | 85 ++ 29 files changed, 411 insertions(+), 235 deletions(-)
More information about variationalDCM at CRAN
Permanent link
Title: Semi-Parametric Dimension Reduction Models Using Orthogonality
Constrained Optimization
Description: Utilize an orthogonality constrained optimization algorithm of
Wen & Yin (2013) <DOI:10.1007/s10107-012-0584-1> to solve a variety of
dimension reduction problems in the semiparametric framework, such as
Ma & Zhu (2012) <DOI:10.1080/01621459.2011.646925>, Ma & Zhu (2013)
<DOI:10.1214/12-AOS1072>, Sun, Zhu, Wang & Zeng (2019) <DOI:10.1093/biomet/asy064>
and Zhou, Zhu & Zeng (2021) <DOI:10.1093/biomet/asaa087>. The package also
implements some existing dimension reduction methods such as hMave by Xia, Zhang,
& Xu (2010) <DOI:10.1198/jasa.2009.tm09372> and partial SAVE by Feng, Wen & Zhu (2013)
<DOI:10.1080/01621459.2012.746065>. It also serves as a general purpose
optimization solver for problems with orthogonality constraints, i.e., in Stiefel
manifold. Parallel computing for approximating the gradient is enabled through 'OpenMP'.
Author: Ruilin Zhao [aut, cph],
Ruoqing Zhu [aut, cre, cph] ,
Jiyang Zhang [aut, cph],
Wenzhuo Zhou [aut, cph],
Peng Xu [aut, cph],
James Joseph Balamuta [ctb]
Maintainer: Ruoqing Zhu <teazrq@gmail.com>
Diff between orthoDr versions 0.6.7 dated 2023-04-30 and 0.6.8 dated 2024-03-13
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- R/RcppExports.R | 10 ++++------ R/skcm.r | 4 ++-- build/partial.rdb |binary man/dosepred.Rd | 2 +- man/skcm.clinical.Rd | 2 +- man/skcm.melgene.Rd | 2 +- man/surv_dm_solver.Rd | 2 -- man/surv_forward_solver.Rd | 6 ++---- src/RcppExports.cpp | 8 ++++---- src/pdose_kernel_dose.cpp | 4 ++-- src/surv_dm_solver.cpp | 1 - src/surv_forward_solver.cpp | 5 ++--- 14 files changed, 36 insertions(+), 44 deletions(-)
Title: 'OpenAI' API R Interface
Description: A comprehensive set of helpers that streamline data transmission
and processing, making it effortless to interact with the 'OpenAI' API.
Author: Cezary Kuran [aut, cre]
Maintainer: Cezary Kuran <cezary.kuran@gmail.com>
Diff between oaii versions 0.4.0 dated 2024-01-24 and 0.5.0 dated 2024-03-13
DESCRIPTION | 10 - MD5 | 155 ++++++++++++++-------- NAMESPACE | 36 +++++ R/api.R | 41 +---- R/api_assistants.R |only R/api_audio.R | 149 ++++++++------------- R/api_chat.R | 62 +++++++- R/api_completions.R | 8 - R/api_embeddings.R | 33 ++-- R/api_files.R | 49 ++++-- R/api_fine-tuning.R | 92 +++---------- R/api_images.R | 47 +++--- R/api_messages.R |only R/api_models.R | 35 +--- R/api_moderations.R | 7 R/api_runs.R |only R/api_threads.R |only R/api_utils.R | 32 ++++ R/print.R |only R/utils.R | 56 +++++++ man/api_get_key.Rd |only man/api_set_key.Rd |only man/assistants_create_assistant_request.Rd |only man/assistants_create_file_request.Rd |only man/assistants_delete_assistant_file_request.Rd |only man/assistants_delete_assistant_request.Rd |only man/assistants_list_asistants_request.Rd |only man/assistants_modify_assistant_request.Rd |only man/assistants_retrieve_assistant_file_request.Rd |only man/assistants_retrieve_assistant_request.Rd |only man/audio_speech_request.Rd | 25 +-- man/audio_transcription_request.Rd | 54 +++---- man/audio_translation_request.Rd | 33 +--- man/browseable_audio.Rd |only man/chat_fetch_messages.Rd | 1 man/chat_request.Rd | 29 ++-- man/completions_fetch_text.Rd | 1 man/completions_request.Rd | 11 - man/embeddings_create_request.Rd | 10 - man/embeddings_object_request.Rd | 12 - man/feedback.Rd |only man/files_delete_request.Rd | 6 man/files_fetch_list.Rd | 2 man/files_list_request.Rd | 8 - man/files_retrieve_content_request.Rd | 11 - man/files_retrieve_request.Rd | 6 man/files_upload_request.Rd | 8 - man/fine_tuning_cancel_job_request.Rd | 8 - man/fine_tuning_create_job_request.Rd | 10 - man/fine_tuning_events_list_request.Rd | 12 - man/fine_tuning_fetch_events_list.Rd | 2 man/fine_tuning_fetch_jobs_list.Rd | 2 man/fine_tuning_fetch_retrived_job.Rd | 2 man/fine_tuning_jobs_list_request.Rd | 14 + man/fine_tuning_retrive_job_request.Rd | 8 - man/images_edit_request.Rd | 10 - man/images_fech_set.Rd | 6 man/images_generator_request.Rd | 14 - man/images_merge_sets.Rd | 4 man/images_variation_request.Rd | 10 - man/is_browseable.Rd |only man/is_error.Rd | 2 man/is_image_set.Rd | 3 man/messages_create_message_request.Rd |only man/messages_list_message_files_request.Rd |only man/messages_list_messages_request.Rd |only man/messages_modify_message_request.Rd |only man/messages_retrieve_message_file_request.Rd |only man/messages_retrieve_message_request.Rd |only man/models_delete_request.Rd | 6 man/models_fetch_list.Rd | 2 man/models_list_request.Rd | 4 man/models_retrieve_request.Rd | 6 man/moderation_create_request.Rd | 8 - man/print.oaii_content_audio.Rd |only man/print.oaii_content_audio_aac.Rd |only man/print.oaii_content_audio_flac.Rd |only man/print.oaii_content_audio_mp3.Rd |only man/print.oaii_content_audio_opus.Rd |only man/print.oaii_content_images.Rd |only man/print.oaii_files_df.Rd | 2 man/print.oaii_fine_tuning_events_df.Rd | 2 man/print.oaii_fine_tuning_job.Rd | 2 man/print.oaii_fine_tuning_jobs_df.Rd | 2 man/print.oaii_models_df.Rd | 2 man/print.oaii_res_se.Rd | 2 man/request.Rd | 8 - man/runs_cancel_run_request.Rd |only man/runs_create_run_request.Rd |only man/runs_create_thread_and_run_request.Rd |only man/runs_list_run_steps_request.Rd |only man/runs_list_runs_request.Rd |only man/runs_modify_run_request.Rd |only man/runs_retrieve_run_request.Rd |only man/runs_retrieve_run_step_request.Rd |only man/runs_submit_tool_outputs_request.Rd |only man/threads_create_thread_request.Rd |only man/threads_delete_thread_request.Rd |only man/threads_modify_thread_request.Rd |only man/threads_retrieve_thread_request.Rd |only 100 files changed, 638 insertions(+), 544 deletions(-)