Title: Bayesian Time-Stratified Population Analysis
Description: Provides advanced Bayesian methods to estimate
abundance and run-timing from temporally-stratified
Petersen mark-recapture experiments. Methods include
hierarchical modelling of the capture probabilities
and spline smoothing of the daily run size. Theory
described in Bonner and Schwarz (2011)
<doi:10.1111/j.1541-0420.2011.01599.x>.
Author: Carl J Schwarz <cschwarz.stat.sfu.ca@gmail.com> and
Simon J Bonner <sbonner6@uwo.ca>
Maintainer: Carl J Schwarz <cschwarz.stat.sfu.ca@gmail.com>
Diff between BTSPAS versions 2021.11.2 dated 2021-10-25 and 2024.4.1 dated 2024-03-15
DESCRIPTION | 10 ++-- MD5 | 42 ++++++++++---------- NEWS.md | 9 ++++ R/TimeStratPetersenDiagError_fit.R | 11 ----- R/TimeStratPetersenNonDiagErrorNPMarkAvail_fit.R | 10 ---- R/TimeStratPetersenNonDiagErrorNP_fit.R | 10 ---- R/TimeStratPetersenNonDiagError_fit.R | 10 ---- R/TimeToTargetRunSize.r | 2 R/plot_trace.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 38 +++++++++--------- man/RunTime.Rd | 2 man/TimeStratPetersenDiagErrorWHChinook_fit.Rd | 2 man/TimeStratPetersenDiagErrorWHSteel_fit.Rd | 2 man/TimeStratPetersenDiagError_fit.Rd | 4 - man/TimeStratPetersenNonDiagErrorNPMarkAvail_fit.Rd | 2 man/TimeStratPetersenNonDiagErrorNP_fit.Rd | 2 man/TimeStratPetersenNonDiagError_fit.Rd | 2 man/TimeToTargetRunSize.Rd | 2 man/plot_trace.Rd | 2 vignettes/a-Diagonal-model.Rmd | 2 22 files changed, 72 insertions(+), 94 deletions(-)
Title: Reporting Tools for 'shiny' Modules
Description: Prebuilt 'shiny' modules containing tools for the generation
of 'rmarkdown' reports, supporting reproducible research and analysis.
Author: Dawid Kaledkowski [aut, cre] ,
Kartikeya Kirar [aut] ,
Marcin Kosinski [aut],
Maciej Nasinski [aut],
Konrad Pagacz [aut],
Mahmoud Hallal [aut],
Chendi Liao [rev],
Dony Unardi [rev],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>
Diff between teal.reporter versions 0.3.0 dated 2024-02-16 and 0.3.1 dated 2024-03-15
teal.reporter-0.3.0/teal.reporter/man/add_card_button_srv.Rd |only teal.reporter-0.3.0/teal.reporter/man/add_card_button_ui.Rd |only teal.reporter-0.3.0/teal.reporter/man/download_report_button_srv.Rd |only teal.reporter-0.3.0/teal.reporter/man/download_report_button_ui.Rd |only teal.reporter-0.3.0/teal.reporter/man/reporter_previewer_srv.Rd |only teal.reporter-0.3.0/teal.reporter/man/reporter_previewer_ui.Rd |only teal.reporter-0.3.0/teal.reporter/man/reset_report_button_srv.Rd |only teal.reporter-0.3.0/teal.reporter/man/reset_report_button_ui.Rd |only teal.reporter-0.3.0/teal.reporter/man/simple_reporter_srv.Rd |only teal.reporter-0.3.0/teal.reporter/man/simple_reporter_ui.Rd |only teal.reporter-0.3.1/teal.reporter/DESCRIPTION | 27 - teal.reporter-0.3.1/teal.reporter/MD5 | 142 +++---- teal.reporter-0.3.1/teal.reporter/NEWS.md | 6 teal.reporter-0.3.1/teal.reporter/R/AddCardModule.R | 77 +-- teal.reporter-0.3.1/teal.reporter/R/Archiver.R | 58 ++ teal.reporter-0.3.1/teal.reporter/R/ContentBlock.R | 25 - teal.reporter-0.3.1/teal.reporter/R/DownloadModule.R | 76 ++- teal.reporter-0.3.1/teal.reporter/R/FileBlock.R | 15 teal.reporter-0.3.1/teal.reporter/R/NewpageBlock.R | 8 teal.reporter-0.3.1/teal.reporter/R/PictureBlock.R | 45 +- teal.reporter-0.3.1/teal.reporter/R/Previewer.R | 46 +- teal.reporter-0.3.1/teal.reporter/R/RcodeBlock.R | 27 - teal.reporter-0.3.1/teal.reporter/R/Renderer.R | 57 +- teal.reporter-0.3.1/teal.reporter/R/ReportCard.R | 99 ++-- teal.reporter-0.3.1/teal.reporter/R/Reporter.R | 148 ++++--- teal.reporter-0.3.1/teal.reporter/R/ResetModule.R | 30 - teal.reporter-0.3.1/teal.reporter/R/SimpleReporter.R | 50 +- teal.reporter-0.3.1/teal.reporter/R/TableBlock.R | 20 teal.reporter-0.3.1/teal.reporter/R/TextBlock.R | 28 - teal.reporter-0.3.1/teal.reporter/R/utils.R | 38 - teal.reporter-0.3.1/teal.reporter/R/yaml_utils.R | 106 +++-- teal.reporter-0.3.1/teal.reporter/README.md | 2 teal.reporter-0.3.1/teal.reporter/build/vignette.rds |binary teal.reporter-0.3.1/teal.reporter/inst/WORDLIST | 2 teal.reporter-0.3.1/teal.reporter/inst/css/Previewer.css | 12 teal.reporter-0.3.1/teal.reporter/inst/doc/previewerReporter.R | 19 teal.reporter-0.3.1/teal.reporter/inst/doc/previewerReporter.Rmd | 53 +- teal.reporter-0.3.1/teal.reporter/inst/doc/previewerReporter.html | 189 ++++----- teal.reporter-0.3.1/teal.reporter/inst/doc/simpleReporter.R | 32 - teal.reporter-0.3.1/teal.reporter/inst/doc/simpleReporter.Rmd | 66 +-- teal.reporter-0.3.1/teal.reporter/inst/doc/simpleReporter.html | 202 +++++----- teal.reporter-0.3.1/teal.reporter/inst/doc/teal-reporter.R | 6 teal.reporter-0.3.1/teal.reporter/inst/doc/teal-reporter.Rmd | 32 - teal.reporter-0.3.1/teal.reporter/inst/doc/teal-reporter.html | 182 ++++----- teal.reporter-0.3.1/teal.reporter/man/Archiver.Rd | 17 teal.reporter-0.3.1/teal.reporter/man/ContentBlock.Rd | 25 - teal.reporter-0.3.1/teal.reporter/man/FileArchiver.Rd | 15 teal.reporter-0.3.1/teal.reporter/man/FileBlock.Rd | 16 teal.reporter-0.3.1/teal.reporter/man/JSONArchiver.Rd | 41 +- teal.reporter-0.3.1/teal.reporter/man/NewpageBlock.Rd | 9 teal.reporter-0.3.1/teal.reporter/man/PictureBlock.Rd |only teal.reporter-0.3.1/teal.reporter/man/RcodeBlock.Rd | 28 - teal.reporter-0.3.1/teal.reporter/man/Renderer.Rd | 85 ++-- teal.reporter-0.3.1/teal.reporter/man/ReportCard.Rd | 121 +++-- teal.reporter-0.3.1/teal.reporter/man/Reporter.Rd | 197 +++++---- teal.reporter-0.3.1/teal.reporter/man/TableBlock.Rd | 21 - teal.reporter-0.3.1/teal.reporter/man/TextBlock.Rd | 29 - teal.reporter-0.3.1/teal.reporter/man/add_card_button.Rd |only teal.reporter-0.3.1/teal.reporter/man/as_yaml_auto.Rd | 31 - teal.reporter-0.3.1/teal.reporter/man/conv_str_logi.Rd | 14 teal.reporter-0.3.1/teal.reporter/man/download_report_button.Rd |only teal.reporter-0.3.1/teal.reporter/man/get_yaml_field.Rd | 9 teal.reporter-0.3.1/teal.reporter/man/md_header.Rd | 9 teal.reporter-0.3.1/teal.reporter/man/panel_item.Rd | 8 teal.reporter-0.3.1/teal.reporter/man/print.rmd_yaml_header.Rd | 6 teal.reporter-0.3.1/teal.reporter/man/report_render_and_compress.Rd | 12 teal.reporter-0.3.1/teal.reporter/man/reporter_download_inputs.Rd | 12 teal.reporter-0.3.1/teal.reporter/man/reporter_previewer.Rd |only teal.reporter-0.3.1/teal.reporter/man/reset_report_button.Rd |only teal.reporter-0.3.1/teal.reporter/man/rmd_output_arguments.Rd | 7 teal.reporter-0.3.1/teal.reporter/man/rmd_outputs.Rd | 4 teal.reporter-0.3.1/teal.reporter/man/simple_reporter.Rd |only teal.reporter-0.3.1/teal.reporter/man/split_text_block.Rd | 8 teal.reporter-0.3.1/teal.reporter/man/teal.reporter-package.Rd | 2 teal.reporter-0.3.1/teal.reporter/man/to_flextable.Rd | 15 teal.reporter-0.3.1/teal.reporter/man/yaml_quoted.Rd | 10 teal.reporter-0.3.1/teal.reporter/tests/testthat/test-PictureBlock.R | 2 teal.reporter-0.3.1/teal.reporter/vignettes/previewerReporter.Rmd | 53 +- teal.reporter-0.3.1/teal.reporter/vignettes/simpleReporter.Rmd | 66 +-- teal.reporter-0.3.1/teal.reporter/vignettes/teal-reporter.Rmd | 32 - 80 files changed, 1572 insertions(+), 1257 deletions(-)
Title: Deconvolution of Spatial Transcriptomics Data Based on Neural
Networks
Description: Deconvolution of spatial transcriptomics data based on neural networks and single-cell RNA-seq data. SpatialDDLS implements a workflow to create neural network models able to make accurate estimates of cell composition of spots from spatial transcriptomics data using deep learning and the meaningful information provided by single-cell RNA-seq data. See Torroja and Sanchez-Cabo (2019) <doi:10.3389/fgene.2019.00978> and Mañanes et al. (2024) <doi:10.1093/bioinformatics/btae072> to get an overview of the method and see some examples of its performance.
Author: Diego Mananes [aut, cre] ,
Carlos Torroja [aut] ,
Fatima Sanchez-Cabo [aut]
Maintainer: Diego Mananes <dmananesc@cnic.es>
Diff between SpatialDDLS versions 1.0.0 dated 2023-12-06 and 1.0.1 dated 2024-03-15
DESCRIPTION | 8 MD5 | 65 ++- NEWS.md | 8 R/SpatialDDLS.R | 4 R/interGradientsDL.R | 10 R/loadData.R | 13 R/simSingleCell.R | 4 README.md | 13 build/vignette.rds |binary inst/doc/realModelExample.Rmd | 214 ++++++++---- inst/doc/realModelExample.html | 495 ++++++++++++++++------------- man/SpatialDDLS-Rpackage.Rd | 4 man/createSpatialDDLSobject.Rd | 4 man/figures/summary.png |binary vignettes/abserr-celltype-1.png |binary vignettes/abserr-celltype-sep-1.png |binary vignettes/clustering-1.png |binary vignettes/corr-pred-1.png |binary vignettes/distances-1.png |binary vignettes/negative-grad-1.png |binary vignettes/positive-grad-1.png |binary vignettes/pred-spatial-1.png |binary vignettes/pred-spatial-sep-1.png |binary vignettes/pred-spatial-sep-2.png |binary vignettes/pred-spatial-sep-3.png |binary vignettes/pred-spatial-sep-extrinsic-1.png |binary vignettes/pred-spatial-sep-extrinsic-2.png |binary vignettes/pred-spatial-sep-extrinsic-3.png |binary vignettes/realModelExample.Rmd | 214 ++++++++---- vignettes/realModelExample.Rmd.orig | 72 ++-- vignettes/references.bib | 17 vignettes/top-genes-spatial-1.png |only vignettes/top-genes-spatial-2.png |only vignettes/top-genes-spatial-3.png |only vignettes/top-genes-spatial-4.png |only vignettes/top-genes-spatial-5.png |only 36 files changed, 691 insertions(+), 454 deletions(-)
Title: Syntactically Awesome Style Sheets ('Sass')
Description: An 'SCSS' compiler, powered by the 'LibSass' library. With this,
R developers can use variables, inheritance, and functions to generate
dynamic style sheets. The package uses the 'Sass CSS' extension language,
which is stable, powerful, and CSS compatible.
Author: Joe Cheng [aut],
Timothy Mastny [aut],
Richard Iannone [aut] ,
Barret Schloerke [aut] ,
Carson Sievert [aut, cre] ,
Christophe Dervieux [ctb] ,
RStudio [cph, fnd],
Sass Open Source Foundation [ctb, cph] ,
Greter Marcel [ctb, cph] ,
Mifsud Michael [ct [...truncated...]
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between sass versions 0.4.8 dated 2023-12-05 and 0.4.9 dated 2024-03-15
DESCRIPTION | 8 ++--- MD5 | 20 ++++++------- NEWS.md | 4 ++ R/fonts.R | 29 +++++++++++++----- inst/doc/sass.Rmd | 2 - inst/doc/sass.html | 43 +++++++++++++--------------- man/font_face.Rd | 2 - src/libsass/src/memory/shared_ptr.hpp | 2 - tests/testthat/_snaps/font-objects/font-css | 40 +++++++++++++++++++++++++- tests/testthat/test-font-objects.R | 21 ++++++++++++- vignettes/sass.Rmd | 2 - 11 files changed, 121 insertions(+), 52 deletions(-)
Title: Computing P-Values of the K-S Test for (Dis)Continuous Null
Distribution
Description: Computes a p-value of the one-sample two-sided (or one-sided, as a special case) Kolmogorov-Smirnov (KS) statistic, for any fixed critical level, and an arbitrary, possibly large sample size for a pre-specified purely discrete, mixed or continuous cumulative distribution function (cdf) under the null hypothesis. If a data sample is supplied, 'KSgeneral' computes the p-value corresponding to the value of the KS test statistic computed based on the user provided data sample. The package 'KSgeneral' implements a novel, accurate and efficient method named Exact-KS-FFT, expressing the p-value as a double-boundary non-crossing probability for a homogeneous Poisson process, which is then efficiently computed using Fast Fourier Transform (FFT). The package can also be used to compute and plot the complementary cdf of the KS statistic which is known to depend on the hypothesized distribution when the latter is discontinuous (i.e. purely discrete or mixed). To cite this package in publication us [...truncated...]
Author: Dimitrina S. Dimitrova <D.Dimitrova@city.ac.uk>,
Yun Jia <yunjia2019@gmail.com>,
Vladimir K. Kaishev <Vladimir.Kaishev.1@city.ac.uk> and
Senren Tan <raymondtsrtsr@outlook.com>
Maintainer: Dimitrina S. Dimitrova <D.Dimitrova@city.ac.uk>
Diff between KSgeneral versions 1.1.2 dated 2023-07-10 and 1.1.3 dated 2024-03-15
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- R/RcppExports.R | 14 +++++++------- build/partial.rdb |binary 4 files changed, 15 insertions(+), 14 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb]
,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between insight versions 0.19.8 dated 2024-01-31 and 0.19.9 dated 2024-03-15
DESCRIPTION | 17 +- MD5 | 90 ++++++------ NAMESPACE | 9 + NEWS.md | 22 +++ R/apply_table_theme.R | 16 -- R/compute_variances.R | 231 +++++++++++++++----------------- R/find_parameters_mixed.R | 2 R/find_predictors.R | 22 ++- R/find_statistic.R | 20 +- R/format_ci.R | 119 ++++++++++++---- R/get_df.R | 9 - R/get_df_residual.R | 21 +- R/get_modelmatrix.R | 24 ++- R/get_parameters.R | 2 R/get_parameters_mixed.R | 35 ++-- R/get_predicted_args.R | 42 ++--- R/get_predicted_ci.R | 8 - R/get_statistic.R | 44 +++--- R/get_varcov.R | 113 +++++++++------ R/is_model.R | 2 R/is_model_supported.R | 4 R/is_multivariate.R | 11 - R/link_function.R | 18 +- R/link_inverse.R | 18 +- R/model_info.R | 3 R/null_model.R | 4 R/standardize_names.R | 1 R/utils_model_info.R | 2 README.md | 106 +++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/display.html | 214 ++++++++++++++--------------- inst/doc/export.html | 2 inst/doc/insight.html | 2 man/export_table.Rd | 2 man/format_ci.Rd | 19 ++ tests/testthat/test-BayesFactorBF.R | 1 tests/testthat/test-PROreg.R |only tests/testthat/test-apply_table_theme.R |only tests/testthat/test-coxme.R | 6 tests/testthat/test-format.R | 36 ++++ tests/testthat/test-get_varcov.R | 7 tests/testthat/test-marginaleffects.R | 11 + tests/testthat/test-mgcv.R |only tests/testthat/test-rqss.R | 15 +- tests/testthat/test-serp.R |only tests/testthat/test-vgam.R | 4 48 files changed, 769 insertions(+), 568 deletions(-)
Title: Main Package of the EMU Speech Database Management System
Description: Provide the EMU Speech Database Management System (EMU-SDMS) with
database management, data extraction, data preparation and data
visualization facilities. See <https://ips-lmu.github.io/The-EMU-SDMS-Manual/>
for more details.
Author: Markus Jochim [aut, cre] ,
Raphael Winkelmann [aut],
Klaus Jaensch [aut, ctb],
Steve Cassidy [aut, ctb],
Jonathan Harrington [aut, ctb]
Maintainer: Markus Jochim <markusjochim@phonetik.uni-muenchen.de>
Diff between emuR versions 2.4.2 dated 2023-11-03 and 2.5.0 dated 2024-03-15
DESCRIPTION | 10 MD5 | 26 - NAMESPACE | 1 NEWS.md | 12 R/emuR-annotations_crud.R | 512 +++++++++++++++++++++------- R/emuR-crud-helpers.R | 35 + R/emuR-emuRsegs.R | 2 R/emuR-packageDocs.R | 3 R/emusegs.R | 8 man/create_itemsInLevel.Rd | 166 ++++++--- man/delete_itemsInLevel.Rd | 51 ++ man/emuR-package.Rd | 21 + man/update_itemsInLevel.Rd | 37 +- tests/testthat/test_emuR-annotations_crud.R | 3 14 files changed, 661 insertions(+), 226 deletions(-)
Title: LiDAR Data Voxelisation
Description: Read, manipulate and write voxel spaces. Voxel spaces are
read from text-based output files of the 'AMAPVox' software. 'AMAPVox'
is a LiDAR point cloud voxelisation software that aims at estimating
leaf area through several theoretical/numerical approaches. See more
in the article Vincent et al. (2017) <doi:10.23708/1AJNMP> and the
technical note Vincent et al. (2021) <doi:10.23708/1AJNMP>.
Author: Gregoire Vincent [aut],
Julien Heurtebize [aut],
Philippe Verley [aut, cre]
Maintainer: Philippe Verley <philippe.verley@ird.fr>
Diff between AMAPVox versions 1.0.1 dated 2023-06-22 and 2.2.1 dated 2024-03-15
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ NEWS.md | 9 +++++++++ R/AMAPVox.R | 2 +- R/VersionManager.R | 30 ++++++++++++++++++++---------- build/partial.rdb |binary inst/doc/AMAPVox.R | 2 +- inst/doc/Installation.R | 2 +- inst/doc/Publications.R | 6 +++--- inst/doc/Voxelization.R | 2 +- inst/doc/amapvox-gui.R | 2 +- man/AMAPVox.Rd | 6 +++--- man/installVersion.Rd | 6 +++++- 13 files changed, 62 insertions(+), 39 deletions(-)
Title: Clinical Graphs and Tables Adhering to Graphical Principles
Description: To enable fit-for-purpose, reusable clinical and medical
research focused visualizations and tables with sensible defaults and
based on graphical principles as described in: "Vandemeulebroecke et
al. (2018)" <doi:10.1002/pst.1912>, "Vandemeulebroecke et al. (2019)"
<doi:10.1002/psp4.12455>, and "Morris et al. (2019)"
<doi:10.1136/bmjopen-2019-030215>.
Author: Mark Baillie [aut, cre, cph],
Diego Saldana [aut],
Charlotta Fruechtenicht [aut],
Marc Vandemeulebroecke [aut],
Thanos Siadimas [aut],
Pawel Kawski [aut],
Steven Haesendonckx [aut],
James Black [aut],
Pelagia Alexandra Papadopoulou [aut],
Tim Treis [ [...truncated...]
Maintainer: Mark Baillie <bailliem@gmail.com>
Diff between visR versions 0.4.0 dated 2023-11-20 and 0.4.1 dated 2024-03-15
DESCRIPTION | 9 MD5 | 20 NEWS.md | 2 R/add_highlight.R | 42 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/CDISC_ADaM.html | 212 +++--- inst/doc/Time_to_event_analysis.html | 1072 ++++++++++++++--------------------- man/visR-package.Rd | 1 tests/testthat/helper.R | 5 tests/testthat/test-utils_visR.R | 4 11 files changed, 600 insertions(+), 767 deletions(-)
Title: Shared, Joint (Generalized) Frailty Models; Surrogate Endpoints
Description: The following several classes of frailty models using a penalized likelihood estimation on the hazard function but also a parametric estimation can be fit using this R package:
1) A shared frailty model (with gamma or log-normal frailty distribution) and Cox proportional hazard model. Clustered and recurrent survival times can be studied.
2) Additive frailty models for proportional hazard models with two correlated random effects (intercept random effect with random slope).
3) Nested frailty models for hierarchically clustered data (with 2 levels of clustering) by including two iid gamma random effects.
4) Joint frailty models in the context of the joint modelling for recurrent events with terminal event for clustered data or not. A joint frailty model for two semi-competing risks and clustered data is also proposed.
5) Joint general frailty models in the context of the joint modelling for recurrent events with terminal event data with two independent frailty terms.
6) Joint Nested fra [...truncated...]
Author: Virginie Rondeau [aut, cre] ,
Juan R. Gonzalez [aut],
Yassin Mazroui [aut],
Audrey Mauguen [aut],
Amadou Diakite [aut],
Alexandre Laurent [aut],
Myriam Lopez [aut],
Agnieszka Krol [aut],
Casimir L. Sofeu [aut],
Julien Dumerc [aut],
Denis Rustand [aut [...truncated...]
Maintainer: Virginie Rondeau <virginie.rondeau@u-bordeaux.fr>
Diff between frailtypack versions 3.5.1 dated 2023-11-25 and 3.6.0 dated 2024-03-15
DESCRIPTION | 17 MD5 | 75 NAMESPACE | 12 NEWS | 5 R/SurvIC.R | 3 R/dataHelp.R | 31 R/frailtyPenal.R | 3 R/frailtypack-package.R | 75 R/jointRecCompet.R |only R/longiPenal.R | 547 ++ R/plot.jointRecCompet.R |only R/plot.longiPenal.R | 210 - R/print.jointRecCompet.R |only R/print.longiPenal.R | 134 R/simulatejointRecCompet.R |only R/summary.jointRecCompet.R |only R/summary.longiPenal.R | 31 R/trivPenal.R | 62 data/reduce.rda |only man/figures/logo.png |only man/frailtyPenal.Rd | 3 man/frailtypack-package.Rd | 75 man/jointRecCompet.Rd |only man/longiPenal.Rd | 95 man/plot.jointRecCompet.Rd |only man/plot.longiPenal.Rd | 13 man/print.jointRecCompet.Rd |only man/print.longiPenal.Rd | 7 man/reduce.Rd |only man/simulatejointRecCompet.Rd |only man/summary.jointRecCompet.Rd |only man/summary.longiPenal.Rd | 6 src/Adonnees.f90 | 832 ++++ src/AparamMultive.f90 | 217 - src/Aparameters.f90 | 14 src/Integrale_mult_scl.f90 | 4 src/aaUseFunction.f90 | 202 src/distance.f90 | 69 src/frailtypack.h | 17 src/funcpajcompetingsplines.f90 |only src/funcpajcompetingweib.f90 |only src/funcpajlongisplines.f90 | 3 src/funcpajlongisplines2.f90 |only src/init.c | 1 src/joint_competing.f90 |only src/joint_longi.f90 | 8175 ++++++++++++++++++++++------------------ src/natural_effects.f90 | 658 +++ 47 files changed, 7540 insertions(+), 4056 deletions(-)
Title: Standardized Folder Names
Description: Supports the use of standardized folder names.
Author: Brian High [aut, cre],
University of Washington [cph, fnd]
Maintainer: Brian High <bhigh@live.com>
Diff between folders versions 0.0.6 dated 2023-03-14 and 0.1.0 dated 2024-03-15
DESCRIPTION | 6 - MD5 | 22 ++-- R/cleanup_folders.R | 45 ++++++--- R/create_folders.R | 19 ++- R/get_folders.R | 25 ++--- README.md | 166 +++++++++++++++++++++++----------- man/cleanup_folders.Rd | 28 +++-- man/create_folders.Rd | 19 ++- man/get_folders.Rd | 20 +--- tests/testthat/test-cleanup_folders.R | 111 +++++++++++++++++++--- tests/testthat/test-create_folders.R | 9 + tests/testthat/test-get_folders.R | 29 ++++- 12 files changed, 353 insertions(+), 146 deletions(-)
Title: Artificial Intelligence for Education
Description: In social and educational settings, the use of Artificial
Intelligence (AI) is a challenging task. Relevant data is often only
available in handwritten forms, or the use of data is restricted by
privacy policies. This often leads to small data sets. Furthermore, in the educational and social sciences,
data is often unbalanced in terms of
frequencies. To support educators as well as educational and social
researchers in using the potentials of AI for their work, this package
provides a unified interface for neural nets in 'keras',
'tensorflow', and 'pytorch' to deal with natural language problems. In addition,
the package ships with a shiny app, providing a graphical user interface.
This allows the usage of AI for people without skills in writing python/R scripts.
The tools integrate existing mathematical and statistical methods for dealing
with small data sets via pseudo-labeling (e.g. Lee (2013)
<https://www.researchgate.net/publication/280581078_Pseudo-Label_The_Simple_and_Efficie [...truncated...]
Author: Berding Florian [aut, cre] ,
Pargmann Julia [ctb],
Riebenbauer Elisabeth [ctb],
Rebmann Karin [ctb],
Slopinski Andreas [ctb]
Maintainer: Berding Florian <florian.berding@uni-hamburg.de>
Diff between aifeducation versions 0.3.1 dated 2024-02-18 and 0.3.2 dated 2024-03-15
DESCRIPTION | 6 MD5 | 78 +++--- NAMESPACE | 2 NEWS.md | 42 +++ R/aif_gui.R | 159 +++++++++++-- R/aux_fct.R | 68 +++++ R/install_and_config.R | 14 - R/onLoad.R | 2 R/te_classifier_neuralnet_model.R | 2 R/text_embedding_model.R | 324 ++++++++++++++++++++++----- R/transformer_bert.R | 29 ++ R/transformer_deberta_v2.R | 24 +- R/transformer_funnel.R | 22 + R/transformer_longformer.R | 24 +- R/transformer_roberta.R | 24 +- inst/python/pytorch_te_classifier.py | 24 +- inst/python/pytorch_transformer_callbacks.py | 3 man/EmbeddedText.Rd | 15 + man/TextEmbeddingClassifierNeuralNet.Rd | 2 man/TextEmbeddingModel.Rd | 40 ++- man/array_to_matrix.Rd | 2 man/calc_standard_classification_measures.Rd | 2 man/check_embedding_models.Rd | 2 man/clean_pytorch_log_transformers.Rd |only man/create_iota2_mean_object.Rd | 2 man/create_synthetic_units.Rd | 2 man/generate_id.Rd | 2 man/get_coder_metrics.Rd | 2 man/get_folds.Rd | 2 man/get_n_chunks.Rd | 2 man/get_stratified_train_test_split.Rd | 2 man/get_synthetic_cases.Rd | 2 man/get_train_test_split.Rd | 2 man/install_py_modules.Rd | 114 ++++----- man/is.null_or_na.Rd |only man/matrix_to_array_c.Rd | 2 man/split_labeled_unlabeled.Rd | 2 man/summarize_tracked_sustainability.Rd | 2 man/to_categorical_c.Rd | 2 tests/testthat/test-02_basic_text_rep.R | 2 tests/testthat/test-04_transformer_models.R | 116 ++++++++- 41 files changed, 927 insertions(+), 241 deletions(-)
Title: Simulation and Likelihood Calculation of Phylogenetic
Comparative Models
Description: Phylogenetic comparative methods represent models of continuous trait
data associated with the tips of a phylogenetic tree. Examples of such models
are Gaussian continuous time branching stochastic processes such as Brownian
motion (BM) and Ornstein-Uhlenbeck (OU) processes, which regard the data at the
tips of the tree as an observed (final) state of a Markov process starting from
an initial state at the root and evolving along the branches of the tree. The
PCMBase R package provides a general framework for manipulating such models.
This framework consists of an application programming interface for specifying
data and model parameters, and efficient algorithms for simulating trait evolution
under a model and calculating the likelihood of model parameters for an assumed
model and trait data. The package implements a growing collection of models,
which currently includes BM, OU, BM/OU with jumps, two-speed OU as well as mixed
Gaussian models, in which different types of the above model [...truncated...]
Author: Venelin Mitov [aut, cre, cph] ,
Krzysztof Bartoszek [ctb],
Georgios Asimomitis [ctb],
Tanja Stadler [ths]
Maintainer: Venelin Mitov <vmitov@gmail.com>
Diff between PCMBase versions 1.2.13 dated 2022-11-18 and 1.2.14 dated 2024-03-15
PCMBase-1.2.13/PCMBase/vignettes/PCMBMkappa.zip |only PCMBase-1.2.14/PCMBase/DESCRIPTION | 14 PCMBase-1.2.14/PCMBase/MD5 | 379 PCMBase-1.2.14/PCMBase/NAMESPACE | 2562 - PCMBase-1.2.14/PCMBase/NEWS.md | 164 PCMBase-1.2.14/PCMBase/R/AutoGeneratedModelTypes.R |21380 +++++----- PCMBase-1.2.14/PCMBase/R/BM.R | 234 PCMBase-1.2.14/PCMBase/R/BMdrift.R | 268 PCMBase-1.2.14/PCMBase/R/DOU.R | 348 PCMBase-1.2.14/PCMBase/R/DefaultModelTypes.R | 346 PCMBase-1.2.14/PCMBase/R/GaussianPCM.R | 2532 - PCMBase-1.2.14/PCMBase/R/JOU.R | 354 PCMBase-1.2.14/PCMBase/R/LatexTools.R | 204 PCMBase-1.2.14/PCMBase/R/MixedGaussian.R | 856 PCMBase-1.2.14/PCMBase/R/OU.R | 392 PCMBase-1.2.14/PCMBase/R/PCM.R | 4438 +- PCMBase-1.2.14/PCMBase/R/PCMBaseTestObjects.R | 144 PCMBase-1.2.14/PCMBase/R/PCMParam.R | 3097 - PCMBase-1.2.14/PCMBase/R/PCMTable.R | 394 PCMBase-1.2.14/PCMBase/R/PCMTree.R | 5349 +- PCMBase-1.2.14/PCMBase/R/Utilities.R | 908 PCMBase-1.2.14/PCMBase/R/White.R | 228 PCMBase-1.2.14/PCMBase/R/matrixparametrizations.R | 1224 PCMBase-1.2.14/PCMBase/R/zzz.R | 46 PCMBase-1.2.14/PCMBase/README.md | 469 PCMBase-1.2.14/PCMBase/build/vignette.rds |binary PCMBase-1.2.14/PCMBase/inst/CITATION | 118 PCMBase-1.2.14/PCMBase/inst/doc/PCMBase.R | 325 PCMBase-1.2.14/PCMBase/inst/doc/PCMBase.Rmd | 654 PCMBase-1.2.14/PCMBase/inst/doc/PCMBase.html | 1910 PCMBase-1.2.14/PCMBase/inst/doc/PCMCreateModel.R | 469 PCMBase-1.2.14/PCMBase/inst/doc/PCMCreateModel.Rmd | 877 PCMBase-1.2.14/PCMBase/inst/doc/PCMCreateModel.html | 1485 PCMBase-1.2.14/PCMBase/inst/doc/PCMParam.R | 342 PCMBase-1.2.14/PCMBase/inst/doc/PCMParam.Rmd | 580 PCMBase-1.2.14/PCMBase/inst/doc/PCMParam.html | 2086 PCMBase-1.2.14/PCMBase/inst/doc/PCMTracePruning.R | 796 PCMBase-1.2.14/PCMBase/inst/doc/PCMTracePruning.Rmd | 978 PCMBase-1.2.14/PCMBase/inst/doc/PCMTracePruning.html | 8666 ++-- PCMBase-1.2.14/PCMBase/man/Args_MixedGaussian_MGPMDefaultModelTypes.Rd | 48 PCMBase-1.2.14/PCMBase/man/Args_MixedGaussian_MGPMScalarOUType.Rd | 28 PCMBase-1.2.14/PCMBase/man/Args_MixedGaussian_MGPMSurfaceOUType.Rd | 28 PCMBase-1.2.14/PCMBase/man/FormatCellAsLatex.Rd | 36 PCMBase-1.2.14/PCMBase/man/FormatTableAsLatex.Rd | 60 PCMBase-1.2.14/PCMBase/man/MGPMScalarOUType.Rd | 28 PCMBase-1.2.14/PCMBase/man/MGPMSurfaceOUType.Rd | 28 PCMBase-1.2.14/PCMBase/man/MatchListMembers.Rd | 88 PCMBase-1.2.14/PCMBase/man/MixedGaussian.Rd | 162 PCMBase-1.2.14/PCMBase/man/MixedGaussianTemplate.Rd | 72 PCMBase-1.2.14/PCMBase/man/PCM.Rd | 272 PCMBase-1.2.14/PCMBase/man/PCMAbCdEf.Rd | 102 PCMBase-1.2.14/PCMBase/man/PCMAddToListAttribute.Rd | 98 PCMBase-1.2.14/PCMBase/man/PCMApplyTransformation.Rd | 58 PCMBase-1.2.14/PCMBase/man/PCMBaseIsADevRelease.Rd | 28 PCMBase-1.2.14/PCMBase/man/PCMBaseTestObjects.Rd | 110 PCMBase-1.2.14/PCMBase/man/PCMColorPalette.Rd | 60 PCMBase-1.2.14/PCMBase/man/PCMCombineListAttribute.Rd | 38 PCMBase-1.2.14/PCMBase/man/PCMCond.GaussianPCM.Rd | 82 PCMBase-1.2.14/PCMBase/man/PCMCond.Rd | 76 PCMBase-1.2.14/PCMBase/man/PCMCondVOU.Rd | 92 PCMBase-1.2.14/PCMBase/man/PCMCreateLikelihood.Rd | 144 PCMBase-1.2.14/PCMBase/man/PCMDefaultModelTypes.Rd | 92 PCMBase-1.2.14/PCMBase/man/PCMDefaultObject.Rd | 48 PCMBase-1.2.14/PCMBase/man/PCMDescribe.Rd | 44 PCMBase-1.2.14/PCMBase/man/PCMDescribeParameters.Rd | 38 PCMBase-1.2.14/PCMBase/man/PCMExtractDimensions.Rd | 60 PCMBase-1.2.14/PCMBase/man/PCMExtractRegimes.Rd | 50 PCMBase-1.2.14/PCMBase/man/PCMFindMethod.Rd | 44 PCMBase-1.2.14/PCMBase/man/PCMFixParameter.Rd | 40 PCMBase-1.2.14/PCMBase/man/PCMGenerateModelTypes.Rd | 78 PCMBase-1.2.14/PCMBase/man/PCMGenerateParameterizations.Rd | 102 PCMBase-1.2.14/PCMBase/man/PCMGetAttribute.Rd | 64 PCMBase-1.2.14/PCMBase/man/PCMGetVecParamsRegimesAndModels.Rd | 66 PCMBase-1.2.14/PCMBase/man/PCMInfo.Rd | 168 PCMBase-1.2.14/PCMBase/man/PCMLik.Rd | 236 PCMBase-1.2.14/PCMBase/man/PCMLikDmvNorm.Rd | 132 PCMBase-1.2.14/PCMBase/man/PCMLikTrace.Rd | 150 PCMBase-1.2.14/PCMBase/man/PCMListMembers.Rd | 66 PCMBase-1.2.14/PCMBase/man/PCMListParameterizations.Rd | 80 PCMBase-1.2.14/PCMBase/man/PCMLmr.Rd | 134 PCMBase-1.2.14/PCMBase/man/PCMMapModelTypesToRegimes.Rd | 58 PCMBase-1.2.14/PCMBase/man/PCMMean.Rd | 118 PCMBase-1.2.14/PCMBase/man/PCMMeanAtTime.Rd | 106 PCMBase-1.2.14/PCMBase/man/PCMModelTypes.Rd | 36 PCMBase-1.2.14/PCMBase/man/PCMModels.Rd | 58 PCMBase-1.2.14/PCMBase/man/PCMNumRegimes.Rd | 34 PCMBase-1.2.14/PCMBase/man/PCMNumTraits.Rd | 36 PCMBase-1.2.14/PCMBase/man/PCMOptions.Rd | 178 PCMBase-1.2.14/PCMBase/man/PCMPExpxMeanExp.Rd | 74 PCMBase-1.2.14/PCMBase/man/PCMPLambdaP_1.Rd | 50 PCMBase-1.2.14/PCMBase/man/PCMPairSums.Rd | 34 PCMBase-1.2.14/PCMBase/man/PCMParam.Rd | 46 PCMBase-1.2.14/PCMBase/man/PCMParamBindRegimeParams.Rd |only PCMBase-1.2.14/PCMBase/man/PCMParamCount.Rd | 92 PCMBase-1.2.14/PCMBase/man/PCMParamGetShortVector.Rd | 52 PCMBase-1.2.14/PCMBase/man/PCMParamLoadOrStore.Rd | 70 PCMBase-1.2.14/PCMBase/man/PCMParamLocateInShortVector.Rd | 76 PCMBase-1.2.14/PCMBase/man/PCMParamLowerLimit.Rd | 50 PCMBase-1.2.14/PCMBase/man/PCMParamRandomVecParams.Rd | 78 PCMBase-1.2.14/PCMBase/man/PCMParamSetByName.Rd | 96 PCMBase-1.2.14/PCMBase/man/PCMParamType.Rd | 332 PCMBase-1.2.14/PCMBase/man/PCMParamUpperLimit.Rd | 50 PCMBase-1.2.14/PCMBase/man/PCMParentClasses.Rd | 44 PCMBase-1.2.14/PCMBase/man/PCMParseErrorMessage.Rd | 34 PCMBase-1.2.14/PCMBase/man/PCMPlotGaussianDensityGrid2D.Rd | 66 PCMBase-1.2.14/PCMBase/man/PCMPlotGaussianSample2D.Rd | 56 PCMBase-1.2.14/PCMBase/man/PCMPlotMath.Rd | 46 PCMBase-1.2.14/PCMBase/man/PCMPlotTraitData2D.Rd | 116 PCMBase-1.2.14/PCMBase/man/PCMPresentCoordinates.Rd | 86 PCMBase-1.2.14/PCMBase/man/PCMRegimes.Rd | 34 PCMBase-1.2.14/PCMBase/man/PCMSetAttribute.Rd | 102 PCMBase-1.2.14/PCMBase/man/PCMSim.Rd | 146 PCMBase-1.2.14/PCMBase/man/PCMSpecify.Rd | 44 PCMBase-1.2.14/PCMBase/man/PCMTable.Rd | 70 PCMBase-1.2.14/PCMBase/man/PCMTableParameterizations.Rd | 60 PCMBase-1.2.14/PCMBase/man/PCMTrajectory.Rd | 232 PCMBase-1.2.14/PCMBase/man/PCMTree.Rd | 212 PCMBase-1.2.14/PCMBase/man/PCMTreeBackbonePartition.Rd | 191 PCMBase-1.2.14/PCMBase/man/PCMTreeDropClade.Rd | 144 PCMBase-1.2.14/PCMBase/man/PCMTreeDtNodes.Rd | 66 PCMBase-1.2.14/PCMBase/man/PCMTreeEdgeTimes.Rd | 28 PCMBase-1.2.14/PCMBase/man/PCMTreeEvalNestedEDxOnTree.Rd | 144 PCMBase-1.2.14/PCMBase/man/PCMTreeExtractClade.Rd | 130 PCMBase-1.2.14/PCMBase/man/PCMTreeGetBranchLength.Rd | 38 PCMBase-1.2.14/PCMBase/man/PCMTreeGetDaughters.Rd | 38 PCMBase-1.2.14/PCMBase/man/PCMTreeGetLabels.Rd | 76 PCMBase-1.2.14/PCMBase/man/PCMTreeGetParent.Rd | 38 PCMBase-1.2.14/PCMBase/man/PCMTreeGetPartNames.Rd | 36 PCMBase-1.2.14/PCMBase/man/PCMTreeGetPartRegimes.Rd | 36 PCMBase-1.2.14/PCMBase/man/PCMTreeGetPartition.Rd | 62 PCMBase-1.2.14/PCMBase/man/PCMTreeGetPartsForNodes.Rd | 42 PCMBase-1.2.14/PCMBase/man/PCMTreeGetRegimesForEdges.Rd | 38 PCMBase-1.2.14/PCMBase/man/PCMTreeGetRegimesForNodes.Rd | 42 PCMBase-1.2.14/PCMBase/man/PCMTreeGetTipsInPart.Rd | 71 PCMBase-1.2.14/PCMBase/man/PCMTreeGetTipsInRegime.Rd | 71 PCMBase-1.2.14/PCMBase/man/PCMTreeInsertSingletons.Rd | 284 PCMBase-1.2.14/PCMBase/man/PCMTreeJumps.Rd | 36 PCMBase-1.2.14/PCMBase/man/PCMTreeListAllPartitions.Rd | 111 PCMBase-1.2.14/PCMBase/man/PCMTreeListCladePartitions.Rd | 104 PCMBase-1.2.14/PCMBase/man/PCMTreeListDescendants.Rd | 54 PCMBase-1.2.14/PCMBase/man/PCMTreeListRootPaths.Rd | 56 PCMBase-1.2.14/PCMBase/man/PCMTreeLocateEpochOnBranches.Rd | 42 PCMBase-1.2.14/PCMBase/man/PCMTreeLocateMidpointsOnBranches.Rd | 44 PCMBase-1.2.14/PCMBase/man/PCMTreeMatchLabels.Rd | 58 PCMBase-1.2.14/PCMBase/man/PCMTreeMatrixNodesInSamePart.Rd | 150 PCMBase-1.2.14/PCMBase/man/PCMTreeNearestNodesToEpoch.Rd | 38 PCMBase-1.2.14/PCMBase/man/PCMTreeNodeTimes.Rd | 42 PCMBase-1.2.14/PCMBase/man/PCMTreeNumNodes.Rd | 40 PCMBase-1.2.14/PCMBase/man/PCMTreeNumParts.Rd | 34 PCMBase-1.2.14/PCMBase/man/PCMTreeNumTips.Rd | 34 PCMBase-1.2.14/PCMBase/man/PCMTreePlot.Rd | 62 PCMBase-1.2.14/PCMBase/man/PCMTreePostorder.Rd | 36 PCMBase-1.2.14/PCMBase/man/PCMTreePreorder.Rd | 36 PCMBase-1.2.14/PCMBase/man/PCMTreeSetLabels.Rd | 122 PCMBase-1.2.14/PCMBase/man/PCMTreeSetPartRegimes.Rd | 184 PCMBase-1.2.14/PCMBase/man/PCMTreeSetPartition.Rd | 137 PCMBase-1.2.14/PCMBase/man/PCMTreeSetRegimesForEdges.Rd | 72 PCMBase-1.2.14/PCMBase/man/PCMTreeSplitAtNode.Rd | 116 PCMBase-1.2.14/PCMBase/man/PCMTreeTableAncestors.Rd | 56 PCMBase-1.2.14/PCMBase/man/PCMTreeToString.Rd | 42 PCMBase-1.2.14/PCMBase/man/PCMTreeVCV.Rd | 48 PCMBase-1.2.14/PCMBase/man/PCMUnfixParameter.Rd | 40 PCMBase-1.2.14/PCMBase/man/PCMVar.Rd | 176 PCMBase-1.2.14/PCMBase/man/PCMVarAtTime.Rd | 120 PCMBase-1.2.14/PCMBase/man/RequireSuggestedPackages.Rd |only PCMBase-1.2.14/PCMBase/man/TruePositiveRate.Rd | 78 PCMBase-1.2.14/PCMBase/man/UpperTriFactor.Rd | 76 PCMBase-1.2.14/PCMBase/man/White.Rd | 26 PCMBase-1.2.14/PCMBase/man/as.MixedGaussian.Rd | 76 PCMBase-1.2.14/PCMBase/man/dataFig3.Rd | 36 PCMBase-1.2.14/PCMBase/man/is.GaussianPCM.Rd | 34 PCMBase-1.2.14/PCMBase/man/is.MixedGaussian.Rd | 34 PCMBase-1.2.14/PCMBase/man/is.PCM.Rd | 34 PCMBase-1.2.14/PCMBase/man/is.PCMTree.Rd | 34 PCMBase-1.2.14/PCMBase/tests/README.txt | 6 PCMBase-1.2.14/PCMBase/tests/testthat.R | 8 PCMBase-1.2.14/PCMBase/tests/testthat/test-MixedGaussian.R | 352 PCMBase-1.2.14/PCMBase/tests/testthat/test-PCM.R | 530 PCMBase-1.2.14/PCMBase/tests/testthat/test-PCMLik-BM.R | 160 PCMBase-1.2.14/PCMBase/tests/testthat/test-PCMLik-BMdrift.R | 282 PCMBase-1.2.14/PCMBase/tests/testthat/test-PCMLik-DOU.R | 154 PCMBase-1.2.14/PCMBase/tests/testthat/test-PCMLik-OU.R | 176 PCMBase-1.2.14/PCMBase/tests/testthat/test-PCMParam.R | 132 PCMBase-1.2.14/PCMBase/tests/testthat/test-PCMSim.R | 114 PCMBase-1.2.14/PCMBase/tests/testthat/test-PCMTree.R | 276 PCMBase-1.2.14/PCMBase/tests/testthat/test-Transformations.R | 130 PCMBase-1.2.14/PCMBase/vignettes/PCMBase.Rmd | 654 PCMBase-1.2.14/PCMBase/vignettes/PCMCreateModel.Rmd | 877 PCMBase-1.2.14/PCMBase/vignettes/PCMParam.Rmd | 580 PCMBase-1.2.14/PCMBase/vignettes/PCMTracePruning.Rmd | 978 PCMBase-1.2.14/PCMBase/vignettes/REFERENCES-R.bib | 279 PCMBase-1.2.14/PCMBase/vignettes/REFERENCES.bib | 652 192 files changed, 42043 insertions(+), 40508 deletions(-)
Title: A Method to Analyze Recurrent DNA Copy Number Aberrations in
Tumors
Description: In tumor tissue, underlying genomic instability can lead to DNA copy number alterations,
e.g., copy number gains or losses. Sporadic copy number alterations occur randomly throughout the
genome, whereas recurrent alterations are observed in the same genomic region across multiple
independent samples, perhaps because they provide a selective growth advantage.
This package implements the DiNAMIC procedure for assessing the statistical significance of
recurrent DNA copy number aberrations (Bioinformatics (2011) 27(5) 678 - 685).
Author: Vonn Walter [aut, cre] ,
Andrew B. Nobel [aut],
Fred A. Wright [aut]
Maintainer: Vonn Walter <vwalter1@pennstatehealth.psu.edu>
Diff between dinamic versions 1.0 dated 2011-11-09 and 1.0.1 dated 2024-03-15
dinamic-1.0.1/dinamic/DESCRIPTION | 49 ++++++++++++++++++++++------- dinamic-1.0.1/dinamic/MD5 | 36 ++++++++++++--------- dinamic-1.0.1/dinamic/NAMESPACE |only dinamic-1.0.1/dinamic/NEWS.md |only dinamic-1.0.1/dinamic/R/annot.file.R |only dinamic-1.0.1/dinamic/R/detailedLook.R |only dinamic-1.0.1/dinamic/R/makeCytoband.R |only dinamic-1.0.1/dinamic/R/peeling.R |only dinamic-1.0.1/dinamic/R/quickLook.R |only dinamic-1.0.1/dinamic/R/recodeBinary.R |only dinamic-1.0.1/dinamic/R/wilms.data.R |only dinamic-1.0.1/dinamic/R/wilms.markers.R |only dinamic-1.0.1/dinamic/README.md |only dinamic-1.0.1/dinamic/data/dinamic.RData |binary dinamic-1.0.1/dinamic/man/annot.file.Rd |only dinamic-1.0.1/dinamic/man/detailedLook.Rd |only dinamic-1.0.1/dinamic/man/makeCytoband.Rd |only dinamic-1.0.1/dinamic/man/peeling.Rd |only dinamic-1.0.1/dinamic/man/quickLook.Rd |only dinamic-1.0.1/dinamic/man/recodeBinary.Rd |only dinamic-1.0.1/dinamic/man/wilms.data.Rd |only dinamic-1.0.1/dinamic/man/wilms.markers.Rd |only dinamic-1.0/dinamic/data/annot.file.txt.gz |only dinamic-1.0/dinamic/data/wilms.data.rda |only dinamic-1.0/dinamic/data/wilms.markers.rda |only dinamic-1.0/dinamic/man/annot.file.rd |only dinamic-1.0/dinamic/man/detailedLook.rd |only dinamic-1.0/dinamic/man/dinamic-package.rd |only dinamic-1.0/dinamic/man/findNull.rd |only dinamic-1.0/dinamic/man/makeCytoband.rd |only dinamic-1.0/dinamic/man/peeling.rd |only dinamic-1.0/dinamic/man/quickLook.rd |only dinamic-1.0/dinamic/man/recodeBinary.rd |only dinamic-1.0/dinamic/man/wilms.data.rd |only dinamic-1.0/dinamic/man/wilms.markers.rd |only 35 files changed, 59 insertions(+), 26 deletions(-)
Title: Applies Display Metadata to Analysis Results Datasets
Description: Creates a framework to store and apply display metadata to Analysis
Results Datasets (ARDs). The use of 'tfrmt' allows users to define table
format and styling without the data, and later apply the format to the data.
Author: Becca Krouse [aut, cre],
Christina Fillmore [aut] ,
GlaxoSmithKline Research & Development Limited [cph, fnd],
Atorus Research LLC [cph, fnd],
Ellis Hughes [aut] ,
Karima Ahmad [aut] ,
Shannon Haughton [aut]
Maintainer: Becca Krouse <becca.z.krouse@gsk.com>
Diff between tfrmt versions 0.1.0 dated 2023-10-17 and 0.1.1 dated 2024-03-15
DESCRIPTION | 8 MD5 | 199 + NAMESPACE | 523 ++--- NEWS.md | 11 R/JSON.R | 882 ++++---- R/apply_col_plan.R | 762 +++---- R/apply_footnote_meta.R | 476 ++-- R/apply_footnote_plan.R | 388 +-- R/apply_frmt_methods.R | 686 +++--- R/apply_page_plan.R | 795 +++---- R/apply_row_grp_plan.R | 680 +++--- R/apply_table_frmt_plan.R | 394 +-- R/apply_tfrmt.R | 1012 +++++----- R/big_n.R | 342 +-- R/body_plan.R | 258 +- R/col_style_plan.R | 344 +-- R/data.R | 148 - R/display_insights.R | 432 ++-- R/display_row_frmts.R | 238 +- R/eval_tidyselect.R | 60 R/frmt_utils.R | 752 +++---- R/mock_tbl.R | 487 ++-- R/page_plan.R | 170 - R/print_to_ggplot.R | 398 +-- R/print_to_gt.R | 74 R/row_group_plan.R | 202 +- R/struct_utils.R |only R/tfrmt.R | 954 ++++----- R/tfrmt_checks.R | 611 +++--- R/tfrmt_layer.R | 560 ++--- R/tfrmt_n_pct.R | 152 - R/theme_element.R | 8 R/utils-pipe.R | 32 R/zzz.R | 14 README.md | 208 +- inst/WORDLIST | 114 - inst/create_json_example_tfrmts.R |only inst/json_examples |only man/apply_frmt.Rd | 130 - man/as_json.Rd | 42 man/big_n_structure.Rd | 62 man/body_plan.Rd | 80 man/cleaned_data_to_gt.Rd | 65 man/col_plan.Rd | 232 +- man/col_style_plan.Rd | 68 man/data_ae.Rd | 54 man/data_demog.Rd | 54 man/data_efficacy.Rd | 52 man/data_labs.Rd | 58 man/display_row_frmts.Rd | 164 - man/display_val_frmts.Rd | 100 - man/element_block.Rd | 85 man/element_row_grp_loc.Rd | 120 - man/footnote_plan.Rd | 72 man/footnote_structure.Rd | 90 man/frmt.Rd | 226 +- man/frmt_structure.Rd | 110 - man/frmt_utils.Rd | 122 - man/json_to_tfrmt.Rd | 36 man/layer_tfrmt.Rd | 88 man/make_mock_data.Rd | 78 man/page_plan.Rd | 84 man/page_structure.Rd | 58 man/param_set.Rd | 82 man/pipe.Rd | 40 man/print_mock_gt.Rd | 124 - man/print_to_ggplot.Rd | 94 man/print_to_gt.Rd | 110 - man/row_grp_plan.Rd | 92 man/row_grp_structure.Rd | 74 man/tfrmt.Rd | 428 ++-- man/tfrmt_n_pct.Rd | 90 man/tfrmt_sigdig.Rd | 206 +- man/tfrmt_to_json.Rd | 56 man/theme_element.Rd | 146 - man/update_group.Rd | 84 tests/testthat.R | 8 tests/testthat/_snaps/JSON.md | 12 tests/testthat/test-JSON.R | 1126 +++++------ tests/testthat/test-apply_footnote_meta.R | 914 ++++----- tests/testthat/test-apply_footnote_plan.R | 578 ++--- tests/testthat/test-apply_frmt.R | 1428 +++++++------- tests/testthat/test-apply_page_plan.R | 1240 ++++++------ tests/testthat/test-apply_row_grp_plan.R | 1949 ++++++++++--------- tests/testthat/test-apply_tfrmt.R | 396 +-- tests/testthat/test-big_ns.R | 1454 +++++++------- tests/testthat/test-check_order_vars.R | 126 - tests/testthat/test-col_plan.R | 2993 +++++++++++++++--------------- tests/testthat/test-col_style_structure.R | 1768 ++++++++--------- tests/testthat/test-display_row_frmts.R | 318 +-- tests/testthat/test-expr_to_filter.R | 134 - tests/testthat/test-footnote_plan.R | 350 +-- tests/testthat/test-make_mock_data.R | 1435 +++++++------- tests/testthat/test-mrkdown_labels.R | 424 ++-- tests/testthat/test-quo_get.R | 236 +- tests/testthat/test-tfmt.R | 2334 +++++++++++------------ tests/testthat/test-tfrmt_checks.R | 157 + tests/testthat/test-tfrmt_n_pct.R | 126 - tests/testthat/test-tfrmt_sigdig.R | 670 +++--- tests/testthat/test-utils_tfrmt.R | 802 ++++---- tests/testthat/test_print_to_ggplot.R | 448 ++-- 101 files changed, 19543 insertions(+), 19213 deletions(-)
Title: Easily Create Fully Randomized 'Moodle' Test Questions
Description: Routines to generate fully randomized 'moodle' quizzes. It also contains 12 examples and a 'shiny' app.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between moodlequizR versions 1.0.3 dated 2023-09-12 and 2.0.2 dated 2024-03-15
DESCRIPTION | 10 MD5 | 119 +++++--- NAMESPACE | 1 NEWS.md | 3 R/RtoHTML.R |only R/genquiz.R | 14 - R/make.xml.R | 2 R/moodleRexample1.R | 4 R/moodleRexample10.R | 4 R/moodleRexample11.R | 4 R/moodleRexample12.R | 4 R/moodleRexample13.R |only R/moodleRexample14.R |only R/moodleRexample15.R |only R/moodleRexample2.R | 4 R/moodleRexample3.R | 4 R/moodleRexample4.R | 4 R/moodleRexample5.R | 4 R/moodleRexample6.R | 4 R/moodleRexample7.R | 4 R/moodleRexample8.R | 4 R/moodleRexample9.R | 4 R/paste.data.R | 10 R/qamatrix.R | 4 data/moodleRexample1.rda |binary data/moodleRexample10.rda |binary data/moodleRexample11.rda |binary data/moodleRexample12.rda |binary data/moodleRexample13.rda |only data/moodleRexample14.rda |only data/moodleRexample15.rda |only data/moodleRexample2.rda |binary data/moodleRexample3.rda |binary data/moodleRexample4.rda |binary data/moodleRexample5.rda |binary data/moodleRexample6.rda |binary data/moodleRexample7.rda |binary data/moodleRexample8.rda |binary data/moodleRexample9.rda |binary inst/doc/moodlequizR.R | 19 - inst/doc/moodlequizR.Rmd | 186 ++++++++++--- inst/doc/moodlequizR.html | 549 ++++++++++++++++++++++++++++------------- inst/shinymoodlequizR/server.R | 223 +++++++++++----- inst/shinymoodlequizR/ui.R | 64 ++-- man/RtoHTML.Rd |only man/genquiz.Rd | 10 man/moodleRexample1.Rd | 4 man/moodleRexample10.Rd | 4 man/moodleRexample11.Rd | 4 man/moodleRexample12.Rd | 4 man/moodleRexample13.Rd |only man/moodleRexample14.Rd |only man/moodleRexample15.Rd |only man/moodleRexample2.Rd | 4 man/moodleRexample3.Rd | 4 man/moodleRexample4.Rd | 4 man/moodleRexample5.Rd | 4 man/moodleRexample6.Rd | 4 man/moodleRexample7.Rd | 4 man/moodleRexample8.Rd | 4 man/moodleRexample9.Rd | 4 man/qamatrix.Rd | 2 vignettes/figure1.png |only vignettes/figure2.png |only vignettes/figure3.png |only vignettes/figure4.png |only vignettes/figure5.png |only vignettes/figure6.png |only vignettes/moodlequizR.Rmd | 186 ++++++++++--- 69 files changed, 1028 insertions(+), 470 deletions(-)
Title: Many Ways to Make, Modify, Mark, and Map Myriad Networks
Description: A set of tools for making, modifying, marking, and mapping many different types of networks.
All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode, two-mode (bipartite), and sometimes three-mode networks.
The package includes functions for importing and exporting, creating and generating networks,
modifying networks and node and tie attributes,
and describing and visualizing networks with sensible defaults.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manynet versions 0.4.1 dated 2024-01-24 and 0.4.4 dated 2024-03-15
manynet-0.4.1/manynet/man/autographing.Rd |only manynet-0.4.4/manynet/DESCRIPTION | 10 manynet-0.4.4/manynet/MD5 | 56 - manynet-0.4.4/manynet/NAMESPACE | 5 manynet-0.4.4/manynet/NEWS.md | 39 + manynet-0.4.4/manynet/R/make_generate.R | 2 manynet-0.4.4/manynet/R/make_play.R | 8 manynet-0.4.4/manynet/R/manip_reformat.R | 2 manynet-0.4.4/manynet/R/manip_reformed.R | 2 manynet-0.4.4/manynet/R/map_autographr.R | 388 +++++++------ manynet-0.4.4/manynet/R/map_layout_configurations.R | 17 manynet-0.4.4/manynet/R/map_layout_partition.R | 74 +- manynet-0.4.4/manynet/R/map_palettes.R | 4 manynet-0.4.4/manynet/R/map_theme.R | 83 +- manynet-0.4.4/manynet/R/mark_nodes.R | 47 - manynet-0.4.4/manynet/man/attributes.Rd | 4 manynet-0.4.4/manynet/man/autographr.Rd |only manynet-0.4.4/manynet/man/autographs.Rd |only manynet-0.4.4/manynet/man/autographt.Rd |only manynet-0.4.4/manynet/man/configuration_layouts.Rd | 13 manynet-0.4.4/manynet/man/features.Rd | 4 manynet-0.4.4/manynet/man/learning.Rd | 2 manynet-0.4.4/manynet/man/many_palettes.Rd | 6 manynet-0.4.4/manynet/man/partition_layouts.Rd | 18 manynet-0.4.4/manynet/man/play.Rd | 1 manynet-0.4.4/manynet/man/properties.Rd | 4 manynet-0.4.4/manynet/man/themes.Rd | 9 manynet-0.4.4/manynet/man/to_scope.Rd | 4 manynet-0.4.4/manynet/tests/testthat/test-manip_reformat.R | 2 manynet-0.4.4/manynet/tests/testthat/test-map_autographr.R | 4 manynet-0.4.4/manynet/tests/testthat/test-map_theme.R | 15 31 files changed, 471 insertions(+), 352 deletions(-)
Title: Create Flashcards of Terms and Definitions
Description: Provides functions for creating flashcard decks of terms and
definitions. This package creates HTML slides using 'revealjs' that can be
viewed in the 'RStudio' viewer or a web browser. Users can create
flashcards from either existing built-in decks or create their own from CSV
files or vectors of function names.
Author: Jeffrey R. Stevens [aut, cre, cph]
Maintainer: Jeffrey R. Stevens <jeffrey.r.stevens@protonmail.com>
Diff between flashr versions 0.1.1 dated 2023-03-28 and 0.1.2 dated 2024-03-15
DESCRIPTION | 8 - MD5 | 22 +- NEWS.md | 5 R/flashcard.R | 8 - README.md | 9 - build/vignette.rds |binary inst/doc/flashr.R | 2 inst/doc/flashr.Rmd | 2 inst/doc/flashr.html | 308 ++++++++++++++++++++-------------------- inst/extdata/operators.csv | 47 +++--- tests/testthat/test-flashcard.R | 18 +- vignettes/flashr.Rmd | 2 12 files changed, 227 insertions(+), 204 deletions(-)
Title: R Client for 'iRODS'
Description: The open sourced data management software 'Integrated
Rule-Oriented Data System' ('iRODS') offers solutions for the whole
data life cycle (<https://irods.org/>). The loosely constructed and
highly configurable architecture of 'iRODS' frees the user from strict
formatting constraints and single-vendor solutions. This package
provides an interface to the 'iRODS' HTTP API, allowing you to manage
your data and metadata in 'iRODS' with R. Storage of annotated files
and R objects in 'iRODS' ensures findability, accessibility,
interoperability, and reusability of data.
Author: Martin Schobben [aut, cre, cph]
,
Mariana Montes [aut],
Terrell Russell [ctb],
Christine Staiger [ctb],
Ton Smeele [ctb],
Alan King [ctb]
Maintainer: Martin Schobben <schobbenmartin@gmail.com>
Diff between rirods versions 0.1.2 dated 2023-11-02 and 0.2.0 dated 2024-03-15
rirods-0.1.2/rirods/R/irods-rest.R |only rirods-0.1.2/rirods/inst/irods_demo/irods_catalog_provider/setup-4.3.0.input |only rirods-0.1.2/rirods/inst/shell_scripts/docker-images-remove.sh |only rirods-0.1.2/rirods/inst/shell_scripts/iadmin.sh |only rirods-0.1.2/rirods/inst/shell_scripts/iauth.sh |only rirods-0.1.2/rirods/inst/shell_scripts/iget.sh |only rirods-0.1.2/rirods/inst/shell_scripts/ils.sh |only rirods-0.1.2/rirods/inst/shell_scripts/imeta.sh |only rirods-0.1.2/rirods/inst/shell_scripts/imkdir.sh |only rirods-0.1.2/rirods/inst/shell_scripts/iput.sh |only rirods-0.1.2/rirods/inst/shell_scripts/iquery.sh |only rirods-0.1.2/rirods/inst/shell_scripts/irm.sh |only rirods-0.1.2/rirods/inst/shell_scripts/urlencode.sh |only rirods-0.1.2/rirods/man/irods_rest_call.Rd |only rirods-0.1.2/rirods/man/local_create_irods.Rd |only rirods-0.1.2/rirods/man/new_irods_df.Rd |only rirods-0.1.2/rirods/man/remove_docker_images.Rd |only rirods-0.1.2/rirods/man/remove_mock_files.Rd |only rirods-0.1.2/rirods/tests/testthat/_snaps/irods-print.md |only rirods-0.1.2/rirods/tests/testthat/_snaps/irods-s3.md |only rirods-0.1.2/rirods/tests/testthat/_snaps/local-path.md |only rirods-0.1.2/rirods/tests/testthat/add-data-collections |only rirods-0.1.2/rirods/tests/testthat/coerce-irods_df/list-45dbe0.R |only rirods-0.1.2/rirods/tests/testthat/coerce-irods_df/list-e12d92.R |only rirods-0.1.2/rirods/tests/testthat/coerce-irods_df/logicalpath-b947e4-DELETE.R |only rirods-0.1.2/rirods/tests/testthat/coerce-irods_df/metadata-8584b1-POST.R |only rirods-0.1.2/rirods/tests/testthat/coerce-irods_df/stream-07de5f-PUT.R |only rirods-0.1.2/rirods/tests/testthat/coerce-irods_df/stream-322103-PUT.R |only rirods-0.1.2/rirods/tests/testthat/expand-path/list-20ba52.R |only rirods-0.1.2/rirods/tests/testthat/expand-path/list-f91c86.R |only rirods-0.1.2/rirods/tests/testthat/ils |only rirods-0.1.2/rirods/tests/testthat/irods-rest-call |only rirods-0.1.2/rirods/tests/testthat/large-data-objects 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Title: Power Analysis and Data Simulation for Multilevel Models
Description: A declarative language for specifying multilevel models,
solving for population parameters based on specified variance-explained effect
size measures, generating data, and conducting power analyses to determine
sample size recommendations. The specification allows for any number of
within-cluster effects, between-cluster effects, covariate effects
at either level, and random coefficients. Moreover, the models do not
assume orthogonal effects, and predictors can correlate at either level
and accommodate models with multiple interaction effects.
Author: Brian T. Keller [aut, cre, cph]
Maintainer: Brian T. Keller <btkeller@missouri.edu>
Diff between mlmpower versions 1.0.5 dated 2024-01-29 and 1.0.6 dated 2024-03-15
DESCRIPTION | 8 +- MD5 | 21 +++--- NAMESPACE | 1 NEWS.md | 4 + R/model.R | 2 R/parameters.R | 3 R/simulation.R | 155 ++++++++++++++++++++++++++++++++++++++++++++++++- R/variables.R | 6 + build/vignette.rds |binary inst/doc/mlmpower.html | 2 man/center.Rd |only man/mlmpower.Rd | 2 12 files changed, 184 insertions(+), 20 deletions(-)
Title: Genetic Analysis of Populations with Mixed Reproduction
Description: Population genetic analyses for hierarchical analysis of partially
clonal populations built upon the architecture of the 'adegenet' package.
Originally described in Kamvar, Tabima, and Grünwald (2014)
<doi:10.7717/peerj.281> with version 2.0 described in Kamvar, Brooks, and
Grünwald (2015) <doi:10.3389/fgene.2015.00208>.
Author: Zhian N. Kamvar [cre, aut] ,
Javier F. Tabima [aut] ,
Sydney E. Everhart [ctb, dtc] ,
Jonah C. Brooks [aut],
Stacy A. Krueger-Hadfield [ctb]
,
Erik Sotka [ctb],
Brian J. Knaus [ctb] ,
Patrick G. Meirmans [ctb] ,
Frederic D. Chevalier [ctb] ,
David Fo [...truncated...]
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>
Diff between poppr versions 2.9.5 dated 2024-01-15 and 2.9.6 dated 2024-03-15
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 9 +++++++++ R/zzz.r | 10 ++++++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/algo.pdf |binary 7 files changed, 24 insertions(+), 13 deletions(-)
Title: Create Custom Plots for Viewing Genetic Association Results
Description: A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.
Author: Thorhildur Juliusdottir [cph, aut, cre],
Andri Stefansson [aut]
Maintainer: Thorhildur Juliusdottir <totajuliusd@gmail.com>
Diff between topr versions 2.0.0 dated 2024-02-04 and 2.0.1 dated 2024-03-15
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/dat_checks.R | 4 ++-- R/get_plots.R | 2 +- R/manhattan.R | 7 +++++-- R/miscellaneous.R | 7 +++++++ R/plot_functions.R | 2 +- R/regionplot.R | 8 +++++++- man/topr.Rd | 18 ++++++++++++++++++ 10 files changed, 58 insertions(+), 20 deletions(-)
Title: Data Visualization for QTL Experiments
Description: Functions to plot QTL (quantitative trait loci) analysis
results and related diagnostics.
Part of 'qtl2', an upgrade of the 'qtl'
package to better handle high-dimensional data and complex cross
designs.
Author: Brian S Yandell [aut, cre],
Karl W Broman [aut]
Maintainer: Brian S Yandell <brian.yandell@wisc.edu>
Diff between qtl2ggplot versions 1.2.2 dated 2023-03-11 and 1.2.4 dated 2024-03-15
DESCRIPTION | 10 - MD5 | 16 +- R/ggplot_coef.R | 2 R/ggplot_coef_and_lod.R | 3 R/ggplot_listof_scan1coef.R | 14 + R/ggplot_snpasso.R | 2 build/vignette.rds |binary inst/doc/qtl2ggplot.html | 334 ++++++++++++++++++++++---------------------- man/ggplot_snpasso.Rd | 2 9 files changed, 194 insertions(+), 189 deletions(-)
Title: Download Map Data from GISCO API - Eurostat
Description: Tools to download data from the GISCO (Geographic Information
System of the Commission) Eurostat database
<https://ec.europa.eu/eurostat/web/gisco>. Global and European map
data available. This package is in no way officially related to or
endorsed by Eurostat.
Author: Diego Hernangomez [aut, cre, cph]
,
EuroGeographics [cph] ,
Vincent Arel-Bundock [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between giscoR versions 0.4.0 dated 2023-10-30 and 0.4.1 dated 2024-03-15
giscoR-0.4.0/giscoR/data/tgs00026.rda |only giscoR-0.4.0/giscoR/man/gisco_detect_cache_dir.Rd |only giscoR-0.4.0/giscoR/man/tgs00026.Rd |only giscoR-0.4.1/giscoR/DESCRIPTION | 21 giscoR-0.4.1/giscoR/MD5 | 119 - giscoR-0.4.1/giscoR/NEWS.md | 8 giscoR-0.4.1/giscoR/R/data.R | 521 +++---- giscoR-0.4.1/giscoR/R/gisco_attributions.R | 240 +-- giscoR-0.4.1/giscoR/R/gisco_bulk_download.R | 33 giscoR-0.4.1/giscoR/R/gisco_cache.R | 489 +++--- giscoR-0.4.1/giscoR/R/gisco_check_access.R | 100 - giscoR-0.4.1/giscoR/R/gisco_clear_cache.R | 139 - giscoR-0.4.1/giscoR/R/gisco_get_airports.R | 292 ++-- giscoR-0.4.1/giscoR/R/gisco_get_coastallines.R | 174 +- giscoR-0.4.1/giscoR/R/gisco_get_countries.R | 378 ++--- giscoR-0.4.1/giscoR/R/gisco_get_grid.R | 380 ++--- giscoR-0.4.1/giscoR/R/gisco_get_healthcare.R | 19 giscoR-0.4.1/giscoR/R/gisco_get_lau.R | 553 +++---- giscoR-0.4.1/giscoR/R/gisco_get_nuts.R | 359 ++--- giscoR-0.4.1/giscoR/R/gisco_get_postalcodes.R | 310 ++-- giscoR-0.4.1/giscoR/R/gisco_get_units.R | 713 ++++------ giscoR-0.4.1/giscoR/R/gisco_get_urban_audit.R | 184 +- giscoR-0.4.1/giscoR/R/utils_downloads.R | 22 giscoR-0.4.1/giscoR/R/utils_names.R | 233 +-- giscoR-0.4.1/giscoR/README.md | 151 -- giscoR-0.4.1/giscoR/build/vignette.rds |binary giscoR-0.4.1/giscoR/data/gisco_coastallines.rda |binary giscoR-0.4.1/giscoR/data/gisco_countries.rda |binary giscoR-0.4.1/giscoR/data/gisco_countrycode.rda |binary giscoR-0.4.1/giscoR/data/gisco_db.rda |binary giscoR-0.4.1/giscoR/data/gisco_nuts.rda |binary giscoR-0.4.1/giscoR/inst/WORDLIST | 25 giscoR-0.4.1/giscoR/inst/doc/giscoR.Rmd | 259 +-- giscoR-0.4.1/giscoR/inst/doc/giscoR.html | 353 ++-- giscoR-0.4.1/giscoR/inst/schemaorg.json | 4 giscoR-0.4.1/giscoR/man/figures/logo.png |binary giscoR-0.4.1/giscoR/man/gisco_attributions.Rd | 47 giscoR-0.4.1/giscoR/man/gisco_bulk_download.Rd | 35 giscoR-0.4.1/giscoR/man/gisco_check_access.Rd | 6 giscoR-0.4.1/giscoR/man/gisco_clear_cache.Rd | 11 giscoR-0.4.1/giscoR/man/gisco_coastallines.Rd | 11 giscoR-0.4.1/giscoR/man/gisco_countries.Rd | 13 giscoR-0.4.1/giscoR/man/gisco_countrycode.Rd | 10 giscoR-0.4.1/giscoR/man/gisco_db.Rd | 9 giscoR-0.4.1/giscoR/man/gisco_get.Rd | 52 giscoR-0.4.1/giscoR/man/gisco_get_airports.Rd | 8 giscoR-0.4.1/giscoR/man/gisco_get_coastallines.Rd | 33 giscoR-0.4.1/giscoR/man/gisco_get_grid.Rd | 71 giscoR-0.4.1/giscoR/man/gisco_get_healthcare.Rd | 8 giscoR-0.4.1/giscoR/man/gisco_get_lau.Rd | 46 giscoR-0.4.1/giscoR/man/gisco_get_nuts.Rd | 65 giscoR-0.4.1/giscoR/man/gisco_get_postalcodes.Rd | 8 giscoR-0.4.1/giscoR/man/gisco_get_units.Rd | 48 giscoR-0.4.1/giscoR/man/gisco_get_urban_audit.Rd | 29 giscoR-0.4.1/giscoR/man/gisco_nuts.Rd | 8 giscoR-0.4.1/giscoR/man/gisco_set_cache_dir.Rd | 28 giscoR-0.4.1/giscoR/tests/testthat/test-gisco_bulk_download.R | 209 +- giscoR-0.4.1/giscoR/tests/testthat/test-utils.R | 4 giscoR-0.4.1/giscoR/vignettes/africa-1.png |binary giscoR-0.4.1/giscoR/vignettes/country-1.png |binary giscoR-0.4.1/giscoR/vignettes/giscoR-1.png |binary giscoR-0.4.1/giscoR/vignettes/giscoR.Rmd | 259 +-- 62 files changed, 3430 insertions(+), 3667 deletions(-)
Title: Formatting Tools for 'rmarkdown' Documents
Description: Provides a small set of tools for formatting tasks when creating
documents in R Markdown or Quarto Markdown. Convert the elements of a
numerical vector to character strings in one of several forms: powers-of-ten
notation in engineering or scientific form delimited for rendering as inline
equations; integer or decimal notation delimited for equation rendering;
numbers with measurement units (non-delimited) where units are selected to
eliminate the need for powers-of-ten or scientific notation. Useful for
rendering a numerical scalar in an inline R code chunk as well as formatting
columns of data frames displayed in a table.
Author: Richard Layton [aut, cre]
Maintainer: Richard Layton <graphdoctor@gmail.com>
Diff between formatdown versions 0.1.2 dated 2023-06-21 and 0.1.3 dated 2024-03-15
DESCRIPTION | 8 MD5 | 56 - NAMESPACE | 1 NEWS.md | 28 R/format_power.R | 97 + R/format_text.R |only R/formatdown-package.R | 2 R/utils.R | 3 README.md | 39 build/vignette.rds |binary inst/WORDLIST | 8 inst/doc/format_integers_and_decimals.html | 206 ++-- inst/doc/format_powers_of_ten.R | 74 + inst/doc/format_powers_of_ten.Rmd | 154 ++- inst/doc/format_powers_of_ten.html | 1121 +++++++++++++---------- inst/doc/format_text.R |only inst/doc/format_text.Rmd |only inst/doc/format_text.html |only inst/doc/format_units.R | 49 + inst/doc/format_units.Rmd | 76 + inst/doc/format_units.html | 389 +++++-- inst/tinytest/test_format_power.R | 65 - inst/tinytest/test_format_text.R |only man/examples/examples_format_text.R |only man/figures/latex_math_formatting_text_table.png |only man/figures/si-base-units-v2.png |only man/format_decimal.Rd | 1 man/format_power.Rd | 33 man/format_text.Rd |only man/format_units.Rd | 3 man/formatdown-package.Rd | 1 vignettes/format_powers_of_ten.Rmd | 154 ++- vignettes/format_text.Rmd |only vignettes/format_units.Rmd | 76 + 34 files changed, 1779 insertions(+), 865 deletions(-)
Title: Robust Small Area Estimation
Description: Methods to fit robust alternatives to commonly used models used in
Small Area Estimation. The methods here used are based on best linear
unbiased predictions and linear mixed models. At this time available models
include area level models incorporating spatial and temporal correlation in
the random effects.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between saeRobust versions 0.4.0 dated 2023-01-18 and 0.5.0 dated 2024-03-15
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS | 5 +++++ R/print.R | 4 +++- build/vignette.rds |binary inst/doc/fixedPoint.html | 8 ++++---- 6 files changed, 20 insertions(+), 13 deletions(-)
Title: Calculate How many Imputations are Needed for Multiple
Imputation
Description: When performing multiple imputations, while 5-10 imputations are
sufficient for obtaining point estimates, a larger number of
imputations are needed for proper standard error estimates.
This package allows you to calculate how many imputations are
needed, following the work of von Hippel (2020)
<doi:10.1177/0049124117747303>.
Author: Josh Errickson [aut, cre]
Maintainer: Josh Errickson <jerrick@umich.edu>
Diff between howManyImputations versions 0.2.4 dated 2023-02-05 and 0.2.5 dated 2024-03-15
howManyImputations-0.2.4/howManyImputations/man/howManyImputations.Rd |only howManyImputations-0.2.4/howManyImputations/tests/testthat |only howManyImputations-0.2.4/howManyImputations/tests/testthat.R |only howManyImputations-0.2.5/howManyImputations/DESCRIPTION | 10 +- howManyImputations-0.2.5/howManyImputations/MD5 | 13 +-- howManyImputations-0.2.5/howManyImputations/NEWS.md | 9 ++ howManyImputations-0.2.5/howManyImputations/R/how_many_imputations.R | 39 ++++------ howManyImputations-0.2.5/howManyImputations/inst/tinytest |only howManyImputations-0.2.5/howManyImputations/man/how_many_imputations.Rd | 25 ++++-- howManyImputations-0.2.5/howManyImputations/tests/tinytest.R |only 10 files changed, 57 insertions(+), 39 deletions(-)
More information about howManyImputations at CRAN
Permanent link
Title: Interface for the 'Finnish Biodiversity Information Facility'
API
Description: A programmatic interface to the 'Finnish Biodiversity Information
Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates
Finnish biodiversity data from multiple sources in a single open access
portal for researchers, citizen scientists, industry and government.
'FinBIF' allows users of biodiversity information to find, access, combine
and visualise data on Finnish plants, animals and microorganisms. The
'finbif' package makes the publicly available data in 'FinBIF' easily
accessible to programmers. Biodiversity information is available on taxonomy
and taxon occurrence. Occurrence data can be filtered by taxon, time,
location and other variables. The data accessed are conveniently
preformatted for subsequent analyses.
Author: Finnish Museum of Natural History - Luomus [cph],
William K. Morris [aut, cre]
Maintainer: William K. Morris <willi@mmorris.email>
Diff between finbif versions 0.9.4 dated 2024-01-12 and 0.9.5 dated 2024-03-15
DESCRIPTION | 8 ++-- MD5 | 30 +++++++-------- NEWS.md | 14 +++++++ R/filters.R | 31 +++++++--------- R/finbif_occurrence_load.R | 4 +- R/finbif_records.R | 2 - R/finbif_request_token.R | 11 ++--- R/sysdata.rda |binary README.md | 4 +- build/vignette.rds |binary inst/NEWS.Rd | 16 ++++++++ inst/doc/v05_filtering.Rmd | 51 +++++++++----------------- inst/doc/v05_filtering.html | 62 ++++++++++++-------------------- man/filters.Rd | 31 +++++++--------- tests/testthat/test-finbif_occurrence.R | 16 +++++++- vignettes/v05_filtering.Rmd | 51 +++++++++----------------- 16 files changed, 168 insertions(+), 163 deletions(-)
Title: Forecasting Models for Tidy Time Series
Description: Provides a collection of commonly used univariate and multivariate
time series forecasting models including automatically selected exponential
smoothing (ETS) and autoregressive integrated moving average (ARIMA) models.
These models work within the 'fable' framework provided by the 'fabletools'
package, which provides the tools to evaluate, visualise, and combine models
in a workflow consistent with the tidyverse.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Gabriel Caceres [ctb] ,
Christoph Bergmeir [ctb] ,
Tim-Gunnar Hensel [ctb],
Timothy Hyndman [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fable versions 0.3.3 dated 2023-03-22 and 0.3.4 dated 2024-03-15
DESCRIPTION | 8 MD5 | 30 +-- NEWS.md | 6 R/ar.R | 6 R/nnetar.R | 6 README.md | 28 +-- build/partial.rdb |binary inst/WORDLIST | 1 inst/doc/fable.R | 4 inst/doc/fable.html | 316 +++++++++++++++++++-------------------- inst/doc/transformations.html | 112 ++++++------- man/figures/README-example-1.png |binary man/forecast.NNETAR.Rd | 8 src/Makevars | 4 src/Makevars.win | 6 tests/testthat/test-rw.R | 1 16 files changed, 273 insertions(+), 263 deletions(-)
Title: Download and Tidy IPC and CH Data
Description: Utilities to access Integrated Food Security Phase Classification
(IPC) and Cadre Harmonisé (CH) food security data. Wrapper functions are
available for all of the 'IPC-CH' Public API (<https://docs.api.ipcinfo.org>)
simplified and advanced endpoints to easily download the data in a clean and
tidy format.
Author: Seth Caldwell [aut, cre, cph]
Maintainer: Seth Caldwell <caldwellst@gmail.com>
Diff between ripc versions 0.2.0 dated 2023-09-06 and 0.2.1 dated 2024-03-15
DESCRIPTION | 6 ++--- MD5 | 32 +++++++++++++-------------- NEWS.md | 13 ++++++++++- R/asserts.R | 2 - R/ipc_get.R | 10 ++++++-- R/ipc_get_analyses.R | 5 ++-- R/ipc_get_areas.R | 15 ++++++------ R/ipc_get_country.R | 15 +++++++----- R/ipc_get_icons.R | 5 +++- R/ipc_get_points.R | 20 +++++++++++++++-- R/ipc_get_population.R | 54 ++++++++++++++++++++++++++++------------------ build/vignette.rds |binary man/ipc_get_analyses.Rd | 2 - man/ipc_get_areas.Rd | 2 - man/ipc_get_icons.Rd | 2 - man/ipc_get_points.Rd | 2 - man/ipc_get_population.Rd | 2 - 17 files changed, 121 insertions(+), 66 deletions(-)
Title: Exploratory Graph Analysis – a Framework for Estimating the
Number of Dimensions in Multivariate Data using Network
Psychometrics
Description: Implements the Exploratory Graph Analysis (EGA) framework for dimensionality
and psychometric assessment. EGA estimates the number of dimensions in
psychological data using network estimation methods and community detection
algorithms. A bootstrap method is provided to assess the stability of dimensions
and items. Fit is evaluated using the Entropy Fit family of indices. Unique
Variable Analysis evaluates the extent to which items are locally dependent (or
redundant). Network loadings provide similar information to factor loadings and
can be used to compute network scores. A bootstrap and permutation approach are
available to assess configural and metric invariance. Hierarchical structures
can be detected using Hierarchical EGA. Time series and intensive longitudinal
data can be analyzed using Dynamic EGA, supporting individual, group, and
population level assessments.
Author: Hudson Golino [aut, cre] ,
Alexander Christensen [aut] ,
Robert Moulder [ctb] ,
Luis E. Garrido [ctb] ,
Laura Jamison [ctb] ,
Dingjing Shi [ctb]
Maintainer: Hudson Golino <hfg9s@virginia.edu>
Diff between EGAnet versions 2.0.4 dated 2024-01-22 and 2.0.5 dated 2024-03-15
DESCRIPTION | 21 MD5 | 46 - NAMESPACE | 6 NEWS | 23 R/EBICglasso.qgraph.R | 202 ++--- R/auto.correlate.R | 206 ++--- R/bootEGA.R | 777 ++++++++++---------- R/community.compare.R | 242 +++--- R/helpers.R | 1502 +++++++++++++++++++++++----------------- R/hierEGA.R | 491 ++++++------- R/infoCluster.R | 136 ++- R/invariance.R | 448 +++++------ R/net.loads.R | 454 ++++++------ R/network.generalizability.R |only R/network.predictability.R |only inst/CITATION | 8 man/EBICglasso.qgraph.Rd | 10 man/auto.correlate.Rd | 14 man/bootEGA.Rd | 51 - man/community.compare.Rd | 41 - man/hierEGA.Rd | 56 - man/infoCluster.Rd | 4 man/invariance.Rd | 28 man/net.loads.Rd | 2 man/network.generalizability.Rd |only man/network.predictability.Rd |only 26 files changed, 2598 insertions(+), 2170 deletions(-)
Title: Bayesian Network Structure Learning, Parameter Learning and
Inference
Description: Bayesian network structure learning, parameter learning and inference.
This package implements constraint-based (PC, GS, IAMB, Inter-IAMB, Fast-IAMB, MMPC,
Hiton-PC, HPC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing and Tabu
Search) and hybrid (MMHC, RSMAX2, H2PC) structure learning algorithms for discrete,
Gaussian and conditional Gaussian networks, along with many score functions and
conditional independence tests.
The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are also implemented.
Some utility functions (model comparison and manipulation, random data generation, arc
orientation testing, simple and advanced plots) are included, as well as support for
parameter estimation (maximum likelihood and Bayesian) and inference, conditional
probability queries, cross-validation, bootstrap and model averaging.
Development snapshots with the latest bugfixes are available from <https://www.bnlearn.com/>.
Author: Marco Scutari [aut, cre], Tomi Silander [ctb], Robert Ness [ctb]
Maintainer: Marco Scutari <scutari@bnlearn.com>
Diff between bnlearn versions 4.9.2 dated 2024-03-12 and 4.9.3 dated 2024-03-15
Changelog | 8 ++++++++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/classifiers.R | 1 + 4 files changed, 16 insertions(+), 7 deletions(-)
Title: Distribution of the 'BayesX' C++ Sources
Description: 'BayesX' performs Bayesian inference in structured additive regression (STAR) models.
The R package BayesXsrc provides the 'BayesX' command line tool for easy installation.
A convenient R interface is provided in package R2BayesX.
Author: Nikolaus Umlauf [aut, cre] ,
Daniel Adler [aut],
Thomas Kneib [aut],
Stefan Lang [aut],
Achim Zeileis [aut]
Maintainer: Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
Diff between BayesXsrc versions 3.0-4 dated 2023-02-03 and 3.0-5 dated 2024-03-15
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/bayesxsrc/psplines/spline_basis.cpp | 2 ++ 3 files changed, 8 insertions(+), 6 deletions(-)
Title: Bayesian Preference Learning with the Mallows Rank Model
Description: An implementation of the Bayesian version of the Mallows rank model
(Vitelli et al., Journal of Machine Learning Research, 2018 <https://jmlr.org/papers/v18/15-481.html>;
Crispino et al., Annals of Applied Statistics, 2019 <doi:10.1214/18-AOAS1203>;
Sorensen et al., R Journal, 2020 <doi:10.32614/RJ-2020-026>;
Stein, PhD Thesis, 2023 <https://eprints.lancs.ac.uk/id/eprint/195759>). Both Metropolis-Hastings
and sequential Monte Carlo algorithms for estimating the models are available. Cayley, footrule,
Hamming, Kendall, Spearman, and Ulam distances are supported in the models. The rank data to be
analyzed can be in the form of complete rankings, top-k rankings, partially missing rankings, as well
as consistent and inconsistent pairwise preferences. Several functions for plotting and studying the
posterior distributions of parameters are provided. The package also provides functions for estimating
the partition function (normalizing constant) of the Mallows rank mo [...truncated...]
Author: Oystein Sorensen [aut, cre] ,
Waldir Leoncio [aut],
Valeria Vitelli [aut] ,
Marta Crispino [aut],
Qinghua Liu [aut],
Cristina Mollica [aut],
Luca Tardella [aut],
Anja Stein [aut]
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>
Diff between BayesMallows versions 2.1.0 dated 2024-03-13 and 2.1.1 dated 2024-03-15
DESCRIPTION | 6 ++--- MD5 | 14 ++++++------ NEWS.md | 5 ++++ R/compute_mallows_sequentially.R | 7 ++++++ build/partial.rdb |binary inst/examples/compute_mallows_sequentially_example.R | 2 - man/compute_mallows_sequentially.Rd | 2 - tests/testthat/test-compute_mallows_sequentially.R | 21 +++++++++++++++++++ 8 files changed, 45 insertions(+), 12 deletions(-)
Title: A System for Working with Templates
Description: Provides tools to work with template code and text in R. It aims to
provide a simple substitution mechanism for R-expressions inside these
templates. Templates can be written in other languages like 'SQL', can
simply be represented by characters in R, or can themselves be R-expressions
or functions.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between templates versions 0.3.0 dated 2018-05-22 and 0.4.0 dated 2024-03-15
DESCRIPTION | 11 MD5 | 18 - NAMESPACE | 4 NEWS | 6 R/NAMESPACE.R | 6 R/templateUtilities.R | 6 build/vignette.rds |binary inst/doc/Template_Programming_in_R.R | 14 inst/doc/Template_Programming_in_R.html | 455 ++++++++++++++++++++++++++------ tests/testthat/test-utils.R | 20 + 10 files changed, 427 insertions(+), 113 deletions(-)
Title: 'Amazon Web Service S3' File System
Description: Access 'Amazon Web Service Simple Storage Service' ('S3') <https://aws.amazon.com/s3/>
as if it were a file system. Interface based on the R package 'fs'.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between s3fs versions 0.1.4 dated 2023-10-23 and 0.1.5 dated 2024-03-15
DESCRIPTION | 6 +-- MD5 | 8 ++-- NEWS.md | 6 +++ R/s3filesystem_class.R | 30 ++++++++-------- R/utils.R | 88 +++++++++++++++++++++---------------------------- 5 files changed, 67 insertions(+), 71 deletions(-)
Title: Decode Information from Neural Activity
Description: Neural decoding is method of analyzing neural data that
uses a pattern classifiers to predict experimental conditions based
on neural activity. 'NeuroDecodeR' is a system of objects that
makes it easy to run neural decoding analyses. For more information
on neural decoding see Meyers & Kreiman (2011)
<doi:10.7551/mitpress/8404.003.0024>.
Author: Ethan Meyers [aut, cre]
Maintainer: Ethan Meyers <ethan.meyers@gmail.com>
Diff between NeuroDecodeR versions 0.1.0 dated 2022-09-29 and 0.2.0 dated 2024-03-15
NeuroDecodeR-0.1.0/NeuroDecodeR/vignettes/ZD_400bins_400sampled_start100_end500.Rda |only NeuroDecodeR-0.1.0/NeuroDecodeR/vignettes/position_invariance_results |only NeuroDecodeR-0.1.0/NeuroDecodeR/vignettes/results |only NeuroDecodeR-0.2.0/NeuroDecodeR/DESCRIPTION | 13 NeuroDecodeR-0.2.0/NeuroDecodeR/MD5 | 276 - NeuroDecodeR-0.2.0/NeuroDecodeR/NAMESPACE | 138 NeuroDecodeR-0.2.0/NeuroDecodeR/R/NeuroDecodeR.R | 120 NeuroDecodeR-0.2.0/NeuroDecodeR/R/cl_max_correlation.R | 300 - NeuroDecodeR-0.2.0/NeuroDecodeR/R/cl_poisson_naive_bayes.R | 374 +- NeuroDecodeR-0.2.0/NeuroDecodeR/R/cl_svm.R | 412 +- NeuroDecodeR-0.2.0/NeuroDecodeR/R/create_binned_data.R | 566 +-- NeuroDecodeR-0.2.0/NeuroDecodeR/R/cv_standard.R | 1046 +++--- NeuroDecodeR-0.2.0/NeuroDecodeR/R/ds_basic.R | 950 +++--- NeuroDecodeR-0.2.0/NeuroDecodeR/R/ds_generalization.R | 578 +-- NeuroDecodeR-0.2.0/NeuroDecodeR/R/fp_select_k_features.R | 332 +- NeuroDecodeR-0.2.0/NeuroDecodeR/R/fp_zscore.R | 212 - NeuroDecodeR-0.2.0/NeuroDecodeR/R/generic_functions.R | 486 +-- NeuroDecodeR-0.2.0/NeuroDecodeR/R/get_num_label_repetitions.R | 1052 +++--- NeuroDecodeR-0.2.0/NeuroDecodeR/R/log_and_save_decoding_results.R | 733 ++-- NeuroDecodeR-0.2.0/NeuroDecodeR/R/ndr_container.R | 276 - NeuroDecodeR-0.2.0/NeuroDecodeR/R/private_helper_functions.R | 526 +-- NeuroDecodeR-0.2.0/NeuroDecodeR/R/raster_data_functions.R | 1305 ++++---- NeuroDecodeR-0.2.0/NeuroDecodeR/R/rm_confusion_matrix.R | 1100 +++---- NeuroDecodeR-0.2.0/NeuroDecodeR/R/rm_main_results.R | 1566 +++++----- NeuroDecodeR-0.2.0/NeuroDecodeR/R/test_valid_NDR_objects.R | 1006 +++--- NeuroDecodeR-0.2.0/NeuroDecodeR/README.md | 254 - NeuroDecodeR-0.2.0/NeuroDecodeR/build/vignette.rds |binary NeuroDecodeR-0.2.0/NeuroDecodeR/inst/doc/NDR_object_specification.R | 172 - NeuroDecodeR-0.2.0/NeuroDecodeR/inst/doc/NDR_object_specification.Rmd | 836 ++--- NeuroDecodeR-0.2.0/NeuroDecodeR/inst/doc/NDR_object_specification.html | 1459 ++++----- NeuroDecodeR-0.2.0/NeuroDecodeR/inst/doc/data_formats.R | 56 NeuroDecodeR-0.2.0/NeuroDecodeR/inst/doc/data_formats.Rmd | 350 +- NeuroDecodeR-0.2.0/NeuroDecodeR/inst/doc/data_formats.html | 1091 +++--- NeuroDecodeR-0.2.0/NeuroDecodeR/inst/doc/datasets.R | 28 NeuroDecodeR-0.2.0/NeuroDecodeR/inst/doc/datasets.Rmd | 288 - 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NeuroDecodeR-0.2.0/NeuroDecodeR/tests/testthat/test-full_decoding.R | 152 NeuroDecodeR-0.2.0/NeuroDecodeR/tests/testthat/test-log_save_results.R | 310 - NeuroDecodeR-0.2.0/NeuroDecodeR/tests/testthat/test-ndr_container.R | 74 NeuroDecodeR-0.2.0/NeuroDecodeR/tests/testthat/test-result_metrics.R | 240 - NeuroDecodeR-0.2.0/NeuroDecodeR/vignettes/NDR_object_specification.Rmd | 836 ++--- NeuroDecodeR-0.2.0/NeuroDecodeR/vignettes/data_formats.Rmd | 350 +- NeuroDecodeR-0.2.0/NeuroDecodeR/vignettes/datasets.Rmd | 288 - NeuroDecodeR-0.2.0/NeuroDecodeR/vignettes/generalization_tutorial.Rmd | 716 ++-- NeuroDecodeR-0.2.0/NeuroDecodeR/vignettes/introduction_tutorial.Rmd | 992 +++--- 122 files changed, 18938 insertions(+), 18723 deletions(-)
Title: Interact with the 'Databrary.org' API
Description: 'Databrary.org' is a restricted access repository for research data, especially video and audio.
This package provides commands to interact with the data stored on 'Databrary.org'.
Author: Rick O. Gilmore [aut, cre, cph],
Jeffrey Spies [aut],
National Science Foundation OAC-2032713 [fnd],
National Institutes of Health R01HD094830 [fnd]
Maintainer: Rick O. Gilmore <rog1@psu.edu>
Diff between databraryr versions 0.6.1 dated 2024-02-22 and 0.6.2 dated 2024-03-15
DESCRIPTION | 6 +-- MD5 | 18 +++++----- NEWS.md | 2 + R/list_party_sponsors.R | 2 - R/list_party_volumes.R | 69 +++++++++++++++++++++++++++++++---------- inst/doc/authorized-users.R | 8 ++-- inst/doc/authorized-users.Rmd | 8 ++-- inst/doc/authorized-users.html | 8 ++-- inst/doc/databrary.html | 2 - vignettes/authorized-users.Rmd | 8 ++-- 10 files changed, 84 insertions(+), 47 deletions(-)
Title: Fine-Scale Population Analysis
Description: Statistical tool set for population genetics. The package provides following functions: 1) empirical Bayes estimator of Fst and other measures of genetic differentiation, 2) regression analysis of environmental effects on genetic differentiation using bootstrap method, 3) interfaces to read and manipulate 'GENEPOP' format data files and allele/haplotype frequency format files.
Author: Reiichiro Nakamichi, Hirohisa Kishino, Shuichi Kitada
Maintainer: Reiichiro Nakamichi <nakamichi_reiichiro33@fra.go.jp>
Diff between FinePop versions 1.5.1 dated 2018-10-26 and 1.5.2 dated 2024-03-15
DESCRIPTION | 14 +++++++------- MD5 | 34 +++++++++++++++++----------------- build/partial.rdb |binary data/herring.rda |binary data/jsmackerel.rda |binary man/DJ.Rd | 11 ++++++----- man/EBDJ.Rd | 11 ++++++----- man/EBFST.Rd | 11 ++++++----- man/EBGstH.Rd | 11 ++++++----- man/GstH.Rd | 11 ++++++----- man/GstN.Rd | 11 ++++++----- man/GstNC.Rd | 11 ++++++----- man/clip.genepop.Rd | 27 ++++++++++++++++++++------- man/herring.Rd | 15 ++++++++++----- man/jsmackerel.Rd | 22 ++++++++++++++-------- man/read.frequency.Rd | 18 +++++++----------- man/read.genepop.Rd | 17 ++++++++--------- man/thetaWC.pair.Rd | 11 ++++++----- 18 files changed, 131 insertions(+), 104 deletions(-)
Title: Epilepsy Ontologies' Similarities
Description: Analysis and visualization of similarities between epilepsy ontologies based on text mining results by comparing ranked lists of co-occurring drug terms in the BioASQ corpus. The ranked result lists of neurological drug terms co-occurring with terms from the epilepsy ontologies EpSO, ESSO, EPILONT, EPISEM and FENICS undergo further analysis. The source data to create the ranked lists of drug names is produced using the text mining workflows described in Mueller, Bernd and Hagelstein, Alexandra (2016) <doi:10.4126/FRL01-006408558>, Mueller, Bernd et al. (2017) <doi:10.1007/978-3-319-58694-6_22>, Mueller, Bernd and Rebholz-Schuhmann, Dietrich (2020) <doi:10.1007/978-3-030-43887-6_52>, and Mueller, Bernd et al. (2022) <doi:10.1186/s13326-021-00258-w>.
Author: Bernd Mueller
Maintainer: Bernd Mueller <bernd.mueller@zbmed.de>
Diff between epos versions 1.0 dated 2021-02-19 and 1.1 dated 2024-03-15
epos-1.0/epos/LICENSE |only epos-1.0/epos/inst/extdata/DCh-Miner_miner-disease-chemical.tsv.gz |only epos-1.1/epos/DESCRIPTION | 14 epos-1.1/epos/MD5 | 70 ++-- epos-1.1/epos/NAMESPACE | 119 ++++---- epos-1.1/epos/R/data.R | 35 +- epos-1.1/epos/R/doThePlotDrugVectors.R | 86 ++--- epos-1.1/epos/R/drawVennDiagramms.R | 60 ++-- epos-1.1/epos/R/main.R | 1 epos-1.1/epos/R/writeNeuroTable.R | 51 ++- epos-1.1/epos/README.md | 15 - epos-1.1/epos/man/calcDSEA.Rd | 44 +-- epos-1.1/epos/man/calcEnrichment.Rd | 40 +- epos-1.1/epos/man/createNeuroTable.Rd | 12 epos-1.1/epos/man/drawVenn4.Rd | 44 +-- epos-1.1/epos/man/drawVenn4Doc.Rd | 44 +-- epos-1.1/epos/man/drawVenn4DrugDoc.Rd | 44 +-- epos-1.1/epos/man/drawVenn4Syn.Rd | 44 +-- epos-1.1/epos/man/drawVenn5.Rd | 44 +-- epos-1.1/epos/man/drawVenn5Doc.Rd | 44 +-- epos-1.1/epos/man/drawVenn5DrugDoc.Rd | 44 +-- epos-1.1/epos/man/drawVenn5Syn.Rd | 44 +-- epos-1.1/epos/man/drawVennGrid.Rd | 102 +++---- epos-1.1/epos/man/getRefAll.Rd | 34 +- epos-1.1/epos/man/getTermMatrix.Rd | 56 +-- epos-1.1/epos/man/plotDSEA.Rd | 144 +++++----- epos-1.1/epos/man/plotEnrichment.Rd | 134 ++++----- epos-1.1/epos/man/printTop10Drugs.Rd | 112 +++---- epos-1.1/epos/man/rawDrugNamesCoOcEPILONT.Rd | 63 ++-- epos-1.1/epos/man/rawDrugNamesCoOcEPISEM.Rd | 63 ++-- epos-1.1/epos/man/rawDrugNamesCoOcESSO.Rd | 63 ++-- epos-1.1/epos/man/rawDrugNamesCoOcEpSO.Rd | 64 ++-- epos-1.1/epos/man/rawDrugNamesCoOcFENICS.Rd | 64 ++-- epos-1.1/epos/man/sortTableByRefMatches.Rd | 113 ++++--- epos-1.1/epos/tests/testthat/test_createBaseTable.R | 11 epos-1.1/epos/tests/testthat/test_createNeuroTable.R | 2 epos-1.1/epos/tests/testthat/test_createTanimotoBaseline.R | 24 + 37 files changed, 996 insertions(+), 952 deletions(-)
Title: Qualitative Comparative Analysis
Description: An extensive set of functions to perform Qualitative Comparative Analysis:
crisp sets ('csQCA'), temporal ('tQCA'), multi-value ('mvQCA')
and fuzzy sets ('fsQCA'), using a GUI - graphical user interface.
'QCA' is a methodology that bridges the qualitative and quantitative
divide in social science research. It uses a Boolean minimization
algorithm, resulting in a minimal causal configuration associated
with a given phenomenon.
Author: Adrian Dusa [aut, cre, cph] ,
Ciprian Paduraru [ctb] ,
jQuery Foundation [cph] ,
jQuery contributors [ctb, cph] ,
Vasil Dinkov [ctb, cph] ,
Dmitry Baranovskiy [ctb, cph] ,
Emmanuel Quentin [ctb, cph] ,
Jimmy Breck-McKye [ctb, cph] ,
Alrik Thiem [aut] [...truncated...]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between QCA versions 3.21 dated 2023-09-18 and 3.22 dated 2024-03-15
DESCRIPTION | 66 ++-- MD5 | 206 ++++++------- NAMESPACE | 1 R/XYplot.R | 15 - R/Xplot.R | 17 - R/allExpressions.R | 15 - R/calibrate.R | 23 - R/causalChain.R | 15 - R/combint.R | 15 - R/complexity.R | 15 - R/createMatrix.R | 15 - R/dimnames.R | 15 - R/findRows.R | 17 - R/findSubsets.R | 15 - R/findSupersets.R | 15 - R/findTh.R | 15 - R/findmin.R | 15 - R/fuzzyand.R | 67 ++-- R/fuzzyor.R | 65 ++-- R/generate.R | 15 - R/getRow.R | 15 - R/getSolution.R | 15 - R/makeChart.R | 15 - R/minimize.R | 38 +- R/modelFit.R | 62 +++- R/onAttach.R | 27 + R/onUnload.R | 15 - R/panel.R | 15 - R/pof.R | 46 +-- R/pofind.R | 15 - R/print.R | 23 - R/removeRedundants.R | 15 - R/replaceCategories.R | 15 - R/retention.R | 15 - R/rowDominance.R | 15 - R/runGUI.R | 15 - R/solveChart.R | 15 - R/sortMatrix.R | 15 - R/sortVector.R | 15 - R/string.R | 15 - R/superSubset.R | 19 - R/truthTable.R | 65 ++-- R/verifyQCA.R | 15 - R/writeSolution.R | 15 - build/partial.rdb |binary data/HarKem.rda |binary data/LC.rda |binary data/LF.rda |binary data/LM.rda |binary data/d.HK.rda |binary data/d.partybans.rda |binary inst/ChangeLog | 129 ++++---- inst/gui/server.R | 19 - inst/gui/www/js/maincode.js | 17 - inst/gui/www/js/utils.js | 15 - inst/staticdocs/CV.html | 4 inst/staticdocs/LegacyDatasets.html | 4 inst/staticdocs/Lipset.html | 4 inst/staticdocs/QCA_package.html | 106 +++---- inst/staticdocs/RS.html | 4 inst/staticdocs/SOPexpressions.html | 4 inst/staticdocs/XYplot.html | 4 inst/staticdocs/Xplot.html | 4 inst/staticdocs/calibrate.html | 4 inst/staticdocs/causalChain.html | 4 inst/staticdocs/chartFunctions.html | 4 inst/staticdocs/export.html | 4 inst/staticdocs/factorize.html | 4 inst/staticdocs/findRows.html | 58 +-- inst/staticdocs/findTh.html | 4 inst/staticdocs/fuzzyops.html | 38 +- inst/staticdocs/generate.html | 4 inst/staticdocs/implicantMatrixFunctions.html | 4 inst/staticdocs/index.html | 4 inst/staticdocs/intersection.html | 4 inst/staticdocs/minimize.html | 389 ++++++++++++-------------- inst/staticdocs/modelFit.html | 4 inst/staticdocs/negate.html | 4 inst/staticdocs/pof.html | 4 inst/staticdocs/retention.html | 4 inst/staticdocs/runGUI.html | 4 inst/staticdocs/subsetsAndSupersets.html | 4 inst/staticdocs/truthTable.html | 357 ++++++++++++----------- man/Lipset.Rd | 16 - man/QCA_package.Rd | 57 +-- man/findRows.Rd | 8 man/fuzzyops.Rd | 11 man/minimize.Rd | 21 - man/modelFit.Rd | 17 - man/truthTable.Rd | 23 - src/CCubes.c | 19 - src/QCA.c | 15 - src/consistency.c | 15 - src/consistent_solution.c | 15 - src/find_consistent_models.c | 15 - src/find_models.c | 15 - src/generate_matrix.c | 15 - src/registerDynamicSymbol.c | 15 - src/row_dominance.c | 15 - src/sort_cols.c | 15 - src/sort_matrix.c | 15 - src/super_rows.c | 15 - src/truthTable.c | 15 - src/utils.c | 15 - 104 files changed, 1431 insertions(+), 1333 deletions(-)
Title: Feature Extraction and Statistics for Time Series
Description: Provides a collection of features, decomposition methods,
statistical summaries and graphics functions for the analysing tidy time
series data. The package name 'feasts' is an acronym comprising of its key
features: Feature Extraction And Statistics for Time Series.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Di Cook [ctb],
Thiyanga Talagala [ctb] ,
Leanne Chhay [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between feasts versions 0.3.1 dated 2023-03-22 and 0.3.2 dated 2024-03-15
DESCRIPTION | 6 - MD5 | 18 +-- NEWS.md | 15 ++ R/classical.R | 8 - R/graphics.R | 7 + R/zzz.R | 2 inst/doc/feasts.R | 2 inst/doc/feasts.html | 202 ++++++++++++++++++-------------------- man/generate.stl_decomposition.Rd | 4 tests/testthat/Rplots.pdf |binary 10 files changed, 140 insertions(+), 124 deletions(-)
Title: A Collection of Robust Statistical Methods
Description: A collection of robust statistical methods based on Wilcox' WRS functions. It implements robust t-tests (independent and dependent samples), robust ANOVA (including between-within subject designs), quantile ANOVA, robust correlation, robust mediation, and nonparametric ANCOVA models based on robust location measures.
Author: Patrick Mair [cre, aut],
Rand Wilcox [aut],
Indrajeet Patil [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between WRS2 versions 1.1-5 dated 2023-10-30 and 1.1-6 dated 2024-03-15
WRS2-1.1-5/WRS2/R/matl.R |only WRS2-1.1-5/WRS2/R/pdis.R |only WRS2-1.1-6/WRS2/DESCRIPTION | 8 ++++---- WRS2-1.1-6/WRS2/MD5 | 12 +++++------- WRS2-1.1-6/WRS2/R/utilities.R | 23 +---------------------- WRS2-1.1-6/WRS2/build/vignette.rds |binary WRS2-1.1-6/WRS2/inst/NEWS.Rd | 7 +++++++ WRS2-1.1-6/WRS2/inst/doc/WRS2.pdf |binary 8 files changed, 17 insertions(+), 33 deletions(-)
Title: Extended Rasch Modeling
Description: Fits Rasch models (RM), linear logistic test models (LLTM), rating scale model (RSM), linear rating scale models (LRSM), partial credit models (PCM), and linear partial credit models (LPCM). Missing values are allowed in the data matrix. Additional features are the ML estimation of the person parameters, Andersen's LR-test, item-specific Wald test, Martin-Loef-Test, nonparametric Monte-Carlo Tests, itemfit and personfit statistics including infit and outfit measures, ICC and other plots, automated stepwise item elimination, simulation module for various binary data matrices.
Author: Patrick Mair [cre, aut],
Thomas Rusch [aut],
Reinhold Hatzinger [aut],
Marco J. Maier [aut],
Rudolf Debelak [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between eRm versions 1.0-5 dated 2024-03-01 and 1.0-6 dated 2024-03-15
DESCRIPTION | 8 +++--- MD5 | 14 +++++------ R/anova.llra.R | 62 ++++++++++++++++++++++++++--------------------------- R/summary.llra.R | 34 ++++++++++++++--------------- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 8 +++++- inst/doc/eRm.pdf |binary 8 files changed, 65 insertions(+), 61 deletions(-)
Title: Configural Frequency Analysis (CFA)
Description: Analysis of configuration frequencies for simple and repeated measures, multiple-samples CFA, hierarchical CFA, bootstrap CFA, functional CFA, Kieser-Victor CFA, and Lindner's test using a conventional and an accelerated algorithm.
Author: Patrick Mair [aut, cre],
Stefan Funke [aut],
Joachim Harloff [ctb],
Alexander von Eye [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between cfa versions 0.10-0 dated 2017-05-01 and 0.10-1 dated 2024-03-15
DESCRIPTION | 9 ++++----- MD5 | 4 ++-- R/PXisMclassic.R | 7 ------- 3 files changed, 6 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-15 4.2.9
2023-12-05 4.2.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-26 0.4.0
2024-01-14 0.3.8
2023-12-14 0.3.5
Title: Inferring Cell-Specific Gene Regulatory Network
Description: A method for inferring cell-specific gene regulatory network from single-cell sequencing data.
Author: Meng Xu [aut, cre]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between inferCSN versions 1.0.0 dated 2024-02-09 and 1.0.1 dated 2024-03-15
inferCSN-1.0.0/inferCSN/R/compute.gene.rank.R |only inferCSN-1.0.0/inferCSN/man/coef.inferCSN.Rd |only inferCSN-1.0.0/inferCSN/man/compute.gene.rank.Rd |only inferCSN-1.0.0/inferCSN/man/inferCSN.fit.Rd |only inferCSN-1.0.0/inferCSN/man/predict.inferCSN.Rd |only inferCSN-1.0.0/inferCSN/man/print.inferCSN.Rd |only inferCSN-1.0.0/inferCSN/man/sub.inferCSN.Rd |only inferCSN-1.0.0/inferCSN/tests |only inferCSN-1.0.1/inferCSN/DESCRIPTION | 8 inferCSN-1.0.1/inferCSN/MD5 | 55 inferCSN-1.0.1/inferCSN/NAMESPACE | 19 inferCSN-1.0.1/inferCSN/R/RcppExports.R | 16 inferCSN-1.0.1/inferCSN/R/calculate.gene.rank.R |only inferCSN-1.0.1/inferCSN/R/inferCSN.R | 33 inferCSN-1.0.1/inferCSN/R/network.visualization.R | 168 +- inferCSN-1.0.1/inferCSN/R/sparse.regression.R | 233 +- inferCSN-1.0.1/inferCSN/R/utils.R | 199 +- inferCSN-1.0.1/inferCSN/README.md | 14 inferCSN-1.0.1/inferCSN/man/calculate.gene.rank.Rd |only inferCSN-1.0.1/inferCSN/man/coef.SRM_fit.Rd |only inferCSN-1.0.1/inferCSN/man/contrast.networks.Rd | 9 inferCSN-1.0.1/inferCSN/man/dynamic.networks.Rd | 35 inferCSN-1.0.1/inferCSN/man/figures/logo.svg | 1715 ++++++++++----------- inferCSN-1.0.1/inferCSN/man/filter.sort.matrix.Rd |only inferCSN-1.0.1/inferCSN/man/model.fit.Rd |only inferCSN-1.0.1/inferCSN/man/net.format.Rd | 37 inferCSN-1.0.1/inferCSN/man/network.heatmap.Rd | 89 - inferCSN-1.0.1/inferCSN/man/predict.SRM_fit.Rd |only inferCSN-1.0.1/inferCSN/man/print.SRM_fit.Rd |only inferCSN-1.0.1/inferCSN/man/single.network.Rd |only inferCSN-1.0.1/inferCSN/man/sparse.regression.Rd | 11 inferCSN-1.0.1/inferCSN/man/table.to.matrix.Rd | 28 inferCSN-1.0.1/inferCSN/src/Interface.cpp | 21 inferCSN-1.0.1/inferCSN/src/RcppExports.cpp | 40 inferCSN-1.0.1/inferCSN/src/include/Interface.h | 2 inferCSN-1.0.1/inferCSN/src/table_to_matrix.cpp | 190 +- 36 files changed, 1646 insertions(+), 1276 deletions(-)
Title: Clean Data Frames
Description: Provides a friendly interface for modifying data frames with a sequence of piped commands built upon the 'tidyverse' Wickham et al., (2019) <doi:10.21105/joss.01686> . The majority of commands wrap 'dplyr' mutate statements in a convenient way to concisely solve common issues that arise when tidying small to medium data sets. Includes smart defaults and allows flexible selection of columns via 'tidyselect'.
Author: Harrison Tietze [aut, cre]
Maintainer: Harrison Tietze <Harrison4192@gmail.com>
Diff between framecleaner versions 0.2.0 dated 2021-11-17 and 0.2.1 dated 2024-03-15
framecleaner-0.2.0/framecleaner/man/fct_or_prob.Rd |only framecleaner-0.2.0/framecleaner/vignettes/PackageIntroduction.R |only framecleaner-0.2.1/framecleaner/DESCRIPTION | 8 framecleaner-0.2.1/framecleaner/LICENSE | 4 framecleaner-0.2.1/framecleaner/MD5 | 140 + framecleaner-0.2.1/framecleaner/NAMESPACE | 100 - framecleaner-0.2.1/framecleaner/NEWS.md | 2 framecleaner-0.2.1/framecleaner/R/clean_frame.R | 82 - framecleaner-0.2.1/framecleaner/R/create_dummmies.R | 161 +- framecleaner-0.2.1/framecleaner/R/create_flag.R | 80 - framecleaner-0.2.1/framecleaner/R/fill_na.R | 122 - framecleaner-0.2.1/framecleaner/R/filter_for.R | 96 - framecleaner-0.2.1/framecleaner/R/filter_missing.R | 384 ++--- framecleaner-0.2.1/framecleaner/R/globals.R | 6 framecleaner-0.2.1/framecleaner/R/guess_id_col.R | 182 +- framecleaner-0.2.1/framecleaner/R/import_dir.R | 66 framecleaner-0.2.1/framecleaner/R/import_tibble.R | 70 framecleaner-0.2.1/framecleaner/R/make_na.R | 158 +- framecleaner-0.2.1/framecleaner/R/manipulate_dates.R |only framecleaner-0.2.1/framecleaner/R/pad_cols.R | 136 - framecleaner-0.2.1/framecleaner/R/recode_item.R | 96 - framecleaner-0.2.1/framecleaner/R/relocate_all.R | 96 - framecleaner-0.2.1/framecleaner/R/remove_whitespace.R | 50 framecleaner-0.2.1/framecleaner/R/select_otherwise.R | 124 - framecleaner-0.2.1/framecleaner/R/set_chr.R | 44 framecleaner-0.2.1/framecleaner/R/set_date.R | 180 +- framecleaner-0.2.1/framecleaner/R/set_dbl.R | 187 +- framecleaner-0.2.1/framecleaner/R/set_fct.R | 169 +- framecleaner-0.2.1/framecleaner/R/set_int.R | 274 +-- framecleaner-0.2.1/framecleaner/R/set_lgl.R | 130 - framecleaner-0.2.1/framecleaner/R/setters.R | 92 - framecleaner-0.2.1/framecleaner/R/utilities.R | 120 - framecleaner-0.2.1/framecleaner/R/utils-pipe.R | 22 framecleaner-0.2.1/framecleaner/README.md | 82 - framecleaner-0.2.1/framecleaner/build/vignette.rds |binary framecleaner-0.2.1/framecleaner/inst/doc/cleanYourFrame.R | 74 - framecleaner-0.2.1/framecleaner/inst/doc/cleanYourFrame.Rmd | 164 +- framecleaner-0.2.1/framecleaner/inst/doc/cleanYourFrame.html | 709 ++++++---- framecleaner-0.2.1/framecleaner/man/as_integer16_or_64.Rd | 34 framecleaner-0.2.1/framecleaner/man/auto_setwd.Rd | 30 framecleaner-0.2.1/framecleaner/man/clean_frame.Rd | 72 - framecleaner-0.2.1/framecleaner/man/create_dummies.Rd | 113 - framecleaner-0.2.1/framecleaner/man/create_flag.Rd | 70 framecleaner-0.2.1/framecleaner/man/date_yh.Rd |only framecleaner-0.2.1/framecleaner/man/date_ym.Rd |only framecleaner-0.2.1/framecleaner/man/date_yq.Rd |only framecleaner-0.2.1/framecleaner/man/fill_na.Rd | 76 - framecleaner-0.2.1/framecleaner/man/filter_for.Rd | 88 - framecleaner-0.2.1/framecleaner/man/filter_missing.data.frame.Rd | 100 - framecleaner-0.2.1/framecleaner/man/import_dir.Rd | 58 framecleaner-0.2.1/framecleaner/man/import_tibble.Rd | 58 framecleaner-0.2.1/framecleaner/man/is_integerish_character.Rd | 36 framecleaner-0.2.1/framecleaner/man/is_integery.Rd | 38 framecleaner-0.2.1/framecleaner/man/is_missing_or_inf.Rd | 36 framecleaner-0.2.1/framecleaner/man/is_probability.Rd | 36 framecleaner-0.2.1/framecleaner/man/make_na.data.frame.Rd | 68 framecleaner-0.2.1/framecleaner/man/pad_auto.Rd | 62 framecleaner-0.2.1/framecleaner/man/pad_col.Rd | 70 framecleaner-0.2.1/framecleaner/man/pipe.Rd | 24 framecleaner-0.2.1/framecleaner/man/recode_chr.Rd | 100 - framecleaner-0.2.1/framecleaner/man/relocate_all.Rd | 58 framecleaner-0.2.1/framecleaner/man/remove_infs.Rd | 36 framecleaner-0.2.1/framecleaner/man/remove_nans.Rd | 36 framecleaner-0.2.1/framecleaner/man/remove_nas.Rd | 36 framecleaner-0.2.1/framecleaner/man/remove_whitespace.Rd | 56 framecleaner-0.2.1/framecleaner/man/select_otherwise.Rd | 76 - framecleaner-0.2.1/framecleaner/man/set_chr.Rd | 52 framecleaner-0.2.1/framecleaner/man/set_date.Rd | 88 - framecleaner-0.2.1/framecleaner/man/set_dbl.data.frame.Rd | 117 - framecleaner-0.2.1/framecleaner/man/set_fct.data.frame.Rd | 97 - framecleaner-0.2.1/framecleaner/man/set_int.data.frame.Rd | 108 - framecleaner-0.2.1/framecleaner/man/set_lgl.data.frame.Rd | 80 - framecleaner-0.2.1/framecleaner/man/set_type_groups.Rd | 44 framecleaner-0.2.1/framecleaner/vignettes/cleanYourFrame.Rmd | 164 +- 74 files changed, 3435 insertions(+), 3192 deletions(-)