Title: Estimation and Additional Tools for Alternative Shared Frailty
Models
Description: Provide estimation and data generation tools for some new multivariate frailty models.
This version includes the gamma, inverse Gaussian, weighted Lindley, Birnbaum-Saunders,
truncated normal and mixture of inverse Gaussian as the distribution for the frailty terms.
For the basal model, it is considered a parametric approach based on the exponential,
Weibull and the piecewise exponential distributions as well as a semiparametric approach.
For details, see Gallardo and Bourguignon (2022) <arXiv:2206.12973>.
Author: Diego Gallardo [aut, cre],
Marcelo Bourguignon [aut]
Maintainer: Diego Gallardo <dgallardo@ubiobio.cl>
Diff between extrafrail versions 1.8 dated 2023-09-26 and 1.9 dated 2024-03-16
DESCRIPTION | 12 MD5 | 12 NAMESPACE | 3 NEWS.md | 4 R/frailty.fit.R | 1586 +++++++++++++++++++++++++++++++++++-------------- R/summary.extrafrail.R | 34 + man/frailty.fit.Rd | 5 7 files changed, 1207 insertions(+), 449 deletions(-)
Title: Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Description: Functions to automate downloading geospatial data available
from several federated data sources (mainly sources maintained by the
US Federal government). Currently, the package enables extraction from
nine datasets: The National Elevation Dataset digital elevation
models (1 and 1/3 arc-second; USGS); The National Hydrography Dataset
(USGS); The Soil Survey Geographic (SSURGO) database from the National
Cooperative Soil Survey (NCSS), which is led by the Natural Resources
Conservation Service (NRCS) under the USDA; the Global Historical
Climatology Network (GHCN), coordinated by National Climatic Data
Center at NOAA; the Daymet gridded estimates of daily weather
parameters for North America, version 4, available from the Oak Ridge
National Laboratory's Distributed Active Archive Center (DAAC); the
International Tree Ring Data Bank; the National Land Cover
Database (NLCD); the Cropland Data Layer from the National Agricultural
Statistics Service; and the PAD-US dataset of protected area [...truncated...]
Author: R. Kyle Bocinsky [aut, cre, cph]
,
Dylan Beaudette [ctb],
Scott Chamberlain [ctb, rev],
Jeffrey Hollister [ctb],
Julia Gustavsen [rev]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>
Diff between FedData versions 4.0.0 dated 2023-10-03 and 4.0.1 dated 2024-03-16
FedData-4.0.0/FedData/R/esri.R |only FedData-4.0.1/FedData/DESCRIPTION | 30 ++++--- FedData-4.0.1/FedData/MD5 | 19 ++-- FedData-4.0.1/FedData/NEWS.md | 5 + FedData-4.0.1/FedData/R/NHD_FUNCTIONS.R | 116 ++++++++++++++++++---------- FedData-4.0.1/FedData/R/NLCD_FUNCTIONS.R | 6 - FedData-4.0.1/FedData/R/PADUS_FUNCTIONS.R | 29 ++++--- FedData-4.0.1/FedData/R/UTILITY_FUNCTIONS.R | 3 FedData-4.0.1/FedData/README.md | 8 - FedData-4.0.1/FedData/man/get_nlcd.Rd | 6 - FedData-4.0.1/FedData/man/get_wbd.Rd | 2 11 files changed, 140 insertions(+), 84 deletions(-)
Title: Elegant Tools for Processing and Visualization of Lipidomics
Data
Description: An elegant tool for processing and visualizing lipidomics data generated by mass spectrometry. 'LipidomicsR' simplifies channel and replicate handling while providing thorough lipid species annotation. Its visualization capabilities encompass principal components analysis plots, heatmaps, volcano plots, and radar plots, enabling concise data summarization and quality assessment. Additionally, it can generate bar plots and line plots to visualize the abundance of each lipid species.
Author: Mingshi Li [aut],
Hengyu Zhu [aut, cre]
Maintainer: Hengyu Zhu <hengyu.21@intl.zju.edu.cn>
Diff between LipidomicsR versions 0.1.0 dated 2024-03-14 and 0.1.6 dated 2024-03-16
DESCRIPTION | 6 MD5 | 6 R/data_cleaner.R | 912 ++++++++++++++++++++++++++--------------------------- R/volcano_master.R | 4 4 files changed, 464 insertions(+), 464 deletions(-)
Title: Retrieving and Analyzing Air Quality and Weather Data from ARPA
Lombardia
Description: Contains functions for retrieving, managing and analysing air quality and weather data from Regione Lombardia open database (<https://www.dati.lombardia.it/>).
Data are collected by ARPA Lombardia (Lombardia Environmental Protection Agency), Italy, through its ground monitoring network.
See the webpage <https://www.arpalombardia.it/> for further information on ARPA Lombardia's activities and history.
Data quality (e.g. missing values, exported values, graphical mapping) has been checked involving members of the ARPA Lombardia's office for air quality control.
The package makes available observations since 1989 (for weather) and 1968 (for air quality) and are updated with daily frequency by the regional agency.
Full description of the package can be retrieved in the companion paper Maranzano \& Algieri (2024), "ARPALData: an R package for retrieving and analyzing air quality
and weather data from ARPA Lombardia (Italy)", Environmental and Ecological Statistics, <doi:1 [...truncated...]
Author: Paolo Maranzano [aut, cre, cph]
,
Andrea Algieri [aut, cph]
Maintainer: Paolo Maranzano <pmaranzano.ricercastatistica@gmail.com>
Diff between ARPALData versions 1.5.1 dated 2024-02-24 and 1.5.2 dated 2024-03-16
DESCRIPTION | 12 +++++----- MD5 | 37 +++++++++++++++---------------- NAMESPACE | 5 ++-- R/AQ_metadata_reshape.R | 18 ++++++++++----- R/AQ_municipal_metadata_reshape.R | 14 +++++++++-- R/ARPALdf_Summary_map.R | 7 ++++- R/Time_aggregate.R | 6 ++--- R/W_metadata_reshape.R | 6 ++--- R/get_ARPA_Lombardia_AQ_data.R | 25 +++++++++++++++----- R/get_ARPA_Lombardia_AQ_municipal_data.R | 24 ++++++++++++++------ R/get_ARPA_Lombardia_W_data.R | 26 ++++++++++++++------- R/get_ARPA_Lombardia_zoning.R | 30 ++++++++++++++++++------- R/get_Lombardia_geospatial.R | 16 +++++++++---- R/map_Lombardia_stations.R | 30 ++++++++++++++++++++----- R/registry_KNN_dist.R | 11 +++++---- inst |only man/Time_aggregate.Rd | 6 ++--- man/get_ARPA_Lombardia_zoning.Rd | 10 ++++---- man/map_Lombardia_stations.Rd | 18 ++++++++++----- man/registry_KNN_dist.Rd | 11 +++++---- 20 files changed, 206 insertions(+), 106 deletions(-)
Title: Date/Time Classes Based on Jalali Calendar
Description: Implements S3 classes for storing dates and date-times based on the Jalali calendar.
The main design goal of 'shide' is consistency with base R's 'Date' and 'POSIXct'.
It provide features such as: date-time parsing, formatting and arithmetic.
Author: Mohsen Mollayi [aut, cre, cph]
Maintainer: Mohsen Mollayi <mmollayi@gmail.com>
Diff between shide versions 0.1.3 dated 2024-02-04 and 0.2.0 dated 2024-03-16
shide-0.1.3/shide/R/accessors.R |only shide-0.1.3/shide/tests/testthat/test-test-jdatetime.R |only shide-0.2.0/shide/DESCRIPTION | 8 - shide-0.2.0/shide/MD5 | 64 +++++++++---- shide-0.2.0/shide/NAMESPACE | 58 +++++++++++- shide-0.2.0/shide/NEWS.md | 27 +++++ shide-0.2.0/shide/R/cpp11.R | 40 ++++++++ shide-0.2.0/shide/R/date.R | 2 shide-0.2.0/shide/R/datetime.R | 28 ----- shide-0.2.0/shide/R/getters.R |only shide-0.2.0/shide/R/jdate.R | 18 ++- shide-0.2.0/shide/R/jdatetime.R | 20 +++- shide-0.2.0/shide/R/leap_years.R |only shide-0.2.0/shide/R/round.R | 75 +++++++++++++++ shide-0.2.0/shide/R/seq.R |only shide-0.2.0/shide/R/setters.R |only shide-0.2.0/shide/R/sysdata.rda |only shide-0.2.0/shide/R/update.R |only shide-0.2.0/shide/R/utils.R | 4 shide-0.2.0/shide/README.md | 13 +- shide-0.2.0/shide/man/jdate.Rd | 2 shide-0.2.0/shide/man/seq.jdate.Rd |only shide-0.2.0/shide/man/sh_day.Rd |only shide-0.2.0/shide/man/sh_hour.Rd |only shide-0.2.0/shide/man/sh_month.Rd |only shide-0.2.0/shide/man/sh_quarter.Rd |only shide-0.2.0/shide/man/sh_round.Rd |only shide-0.2.0/shide/man/sh_tzone.Rd |only shide-0.2.0/shide/man/sh_year.Rd |only shide-0.2.0/shide/man/sh_year_is_leap.Rd |only shide-0.2.0/shide/src/accessors.cpp |only shide-0.2.0/shide/src/cpp11.cpp | 80 +++++++++++++++++ shide-0.2.0/shide/src/jalali.cpp | 8 + shide-0.2.0/shide/src/leap_years.cpp |only shide-0.2.0/shide/src/make.cpp | 21 ++-- shide-0.2.0/shide/src/round.cpp |only shide-0.2.0/shide/src/seq.cpp |only shide-0.2.0/shide/src/sh_year_month_day.h |only shide-0.2.0/shide/src/shide.h | 1 shide-0.2.0/shide/src/utils.cpp | 23 ++-- shide-0.2.0/shide/tests/testthat/test-getters.R |only shide-0.2.0/shide/tests/testthat/test-jdate.R | 20 +++- shide-0.2.0/shide/tests/testthat/test-jdatetime.R |only shide-0.2.0/shide/tests/testthat/test-leap_years.R |only shide-0.2.0/shide/tests/testthat/test-round.R |only shide-0.2.0/shide/tests/testthat/test-seq.R |only shide-0.2.0/shide/tests/testthat/test-setters.R |only 47 files changed, 417 insertions(+), 95 deletions(-)
Title: Recursive Non-Additive Emulator for Multi-Fidelity Data
Description: Performs RNA emulation and active learning proposed by Heo and Sung (2023+) <arXiv:2309.11772> for multi-fidelity computer experiments. The RNA emulator is particularly useful when the simulations with different fidelity level are nonlinearly correlated. The hyperparameters in the model are estimated by maximum likelihood estimation.
Author: Junoh Heo [aut, cre],
Chih-Li Sung [aut]
Maintainer: Junoh Heo <heojunoh@msu.edu>
Diff between RNAmf versions 0.1.0 dated 2023-12-06 and 0.1.1 dated 2024-03-16
DESCRIPTION | 8 MD5 | 18 - R/ALC.R | 552 ++++++++++++++++++++++++++++++++++++------------------ R/ALM.R | 136 ------------- R/ALMC.R | 158 +-------------- R/GP.R | 10 R/matGP.R | 10 man/ALC_RNAmf.Rd | 2 man/ALMC_RNAmf.Rd | 2 man/ALM_RNAmf.Rd | 2 10 files changed, 401 insertions(+), 497 deletions(-)
Title: Useful Wrappers Around Commonly Used Functions
Description: The main functionalities of 'wrappedtools' are:
adding backticks to variable names; rounding to desired precision
with special case for p-values;
selecting columns based on pattern and storing their position, name,
and backticked name; computing and formatting of descriptive statistics
(e.g. mean±SD), comparing groups and creating publication-ready tables with
descriptive statistics and p-values; creating specialized plots for
correlation matrices. Functions were mainly written for my own daily work or
teaching, but may be of use to others as well.
Author: Andreas Busjahn [cre, aut] ,
Bilal Asser [aut]
Maintainer: Andreas Busjahn <andreas@busjahn.net>
Diff between wrappedtools versions 0.9.3 dated 2023-09-24 and 0.9.5 dated 2024-03-16
DESCRIPTION | 16 - MD5 | 45 ++-- NAMESPACE | 10 NEWS.md | 10 R/basefunctions.R | 426 +++++++++++++++++++++-------------------- R/clin_estimates.R |only R/descriptives.R | 24 ++ R/pkgstart.R | 14 + R/plots.R | 104 ++++++++++ R/tests.R | 21 +- README.md | 53 +++-- build/vignette.rds |binary inst/doc/wrappedtools.html | 6 man/ColSeeker.Rd | 2 man/FindVars.Rd | 7 man/WINratio.Rd |only man/detect_outliers.Rd |only man/eGFR.Rd |only man/flex2rmd.Rd |only man/glmCI.Rd | 2 man/ksnormal.Rd | 3 man/label_outliers.Rd |only man/median_cl_boot_gg.Rd |only man/print_kable.Rd | 5 man/wrappedtools-package.Rd | 8 tests/testthat/meanseout.rda |binary tests/testthat/test-FindVars.R | 2 27 files changed, 487 insertions(+), 271 deletions(-)
Title: Embed 'SWI'-'Prolog'
Description: Interface to 'SWI'-'Prolog', <https://www.swi-prolog.org/>. This package is normally not loaded directly, please refer to package 'rolog' instead. The purpose of this package is to provide the 'Prolog' runtime on systems that do not have a software installation of 'SWI'-'Prolog'.
Author: Matthias Gondan [aut, com, cre] ,
Jan Wielemaker [ctb, cph] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rswipl versions 9.1.22 dated 2024-01-25 and 9.3.3 dated 2024-03-16
DESCRIPTION | 8 MD5 | 255 - NEWS.md | 13 README.md | 5 src/Makevars | 10 src/Makevars.win | 6 src/swipl-devel/CMAKE.md | 10 src/swipl-devel/VERSION | 2 src/swipl-devel/app/pack.pl | 18 src/swipl-devel/app/qlf.pl | 296 - src/swipl-devel/bench/run.pl | 18 src/swipl-devel/boot/autoload.pl | 5 src/swipl-devel/boot/init.pl | 56 src/swipl-devel/boot/messages.pl | 6 src/swipl-devel/boot/toplevel.pl | 45 src/swipl-devel/boot/topvars.pl | 17 src/swipl-devel/cmake/Locations.cmake | 13 src/swipl-devel/cmake/LocationsPostPorts.cmake | 4 src/swipl-devel/cmake/QLF.cmake | 2 src/swipl-devel/cmake/cross/linux_i386.cmake | 27 src/swipl-devel/cmake/port/Darwin.cmake | 11 src/swipl-devel/cmake/port/MSYS2.cmake |only src/swipl-devel/cmake/port/Windows.cmake | 2 src/swipl-devel/doc/Release.md | 28 src/swipl-devel/library/check_installation.pl | 24 src/swipl-devel/library/dom.pl | 37 src/swipl-devel/library/help.pl | 43 src/swipl-devel/library/main.pl | 6 src/swipl-devel/library/prolog_colour.pl | 4 src/swipl-devel/library/prolog_coverage.pl | 345 + src/swipl-devel/library/prolog_deps.pl | 123 src/swipl-devel/library/prolog_pack.pl | 238 - src/swipl-devel/library/prolog_trace.pl | 162 src/swipl-devel/library/prolog_versions.pl | 14 src/swipl-devel/library/prolog_xref.pl | 47 src/swipl-devel/library/qsave.pl | 3 src/swipl-devel/library/sandbox.pl | 10 src/swipl-devel/packages/clib/process.c | 2 src/swipl-devel/packages/clib/unix.c | 1 src/swipl-devel/packages/cpp/SWI-cpp2-atommap.h | 2 src/swipl-devel/packages/cpp/SWI-cpp2-plx.h | 8 src/swipl-devel/packages/cpp/SWI-cpp2.cpp | 146 src/swipl-devel/packages/cpp/SWI-cpp2.h | 271 - src/swipl-devel/packages/cpp/pl2cpp2.doc | 1787 +++++++--- src/swipl-devel/packages/cpp/test_cpp.cpp | 552 ++- src/swipl-devel/packages/cpp/test_cpp.pl | 230 + src/swipl-devel/packages/cpp/test_ffi.c | 12 src/swipl-devel/packages/cpp/test_ffi.pl | 2 src/swipl-devel/packages/http/CMakeLists.txt | 7 src/swipl-devel/packages/http/config.h.cmake | 7 src/swipl-devel/packages/http/http.doc | 1 src/swipl-devel/packages/http/http_client.pl | 4 src/swipl-devel/packages/http/http_cors.pl | 2 src/swipl-devel/packages/http/http_files.pl | 6 src/swipl-devel/packages/http/http_header.pl | 12 src/swipl-devel/packages/http/http_open.pl | 24 src/swipl-devel/packages/http/http_redis_plugin.pl | 123 src/swipl-devel/packages/http/http_server_health.pl |only src/swipl-devel/packages/http/http_session.pl | 105 src/swipl-devel/packages/http/json.c | 42 src/swipl-devel/packages/http/stream_range.c | 9 src/swipl-devel/packages/http/test_proxy.pl | 77 src/swipl-devel/packages/http/thread_httpd.pl | 32 src/swipl-devel/packages/http/websocket.pl | 29 src/swipl-devel/packages/plunit/plunit.pl | 34 src/swipl-devel/packages/sgml/catalog.c | 4 src/swipl-devel/packages/ssl/crypto4pl.c | 51 src/swipl-devel/packages/ssl/cryptolib.c | 2 src/swipl-devel/packages/ssl/ssl4pl.c | 1 src/swipl-devel/packages/ssl/test_ssl.pl | 7 src/swipl-devel/packages/zlib/zlib4pl.c | 10 src/swipl-devel/scripts/configure | 52 src/swipl-devel/scripts/macos-deps.sh | 48 src/swipl-devel/scripts/macosx_bundle_fixup.sh | 44 src/swipl-devel/scripts/make-distribution | 36 src/swipl-devel/scripts/make-ppa | 2 src/swipl-devel/src/SWI-Prolog.h | 8 src/swipl-devel/src/Tests/core/test_answer.pl | 6 src/swipl-devel/src/Tests/library/test_date.pl | 4 src/swipl-devel/src/Tests/tabling/test_tabled_shortest_path.pl |only src/swipl-devel/src/minizip/MiniZip64_Changes.txt | 2 src/swipl-devel/src/minizip/configure.ac | 2 src/swipl-devel/src/minizip/crypt.h | 29 src/swipl-devel/src/minizip/ioapi.c | 77 src/swipl-devel/src/minizip/ioapi.h | 44 src/swipl-devel/src/minizip/iowin32.c | 70 src/swipl-devel/src/minizip/iowin32.h | 8 src/swipl-devel/src/minizip/miniunz.c | 101 src/swipl-devel/src/minizip/minizip.c | 85 src/swipl-devel/src/minizip/mztools.c | 8 src/swipl-devel/src/minizip/unzip.c | 556 +-- src/swipl-devel/src/minizip/unzip.h | 154 src/swipl-devel/src/minizip/zip.c | 351 - src/swipl-devel/src/minizip/zip.h | 310 - src/swipl-devel/src/os/SWI-Stream.h | 3 src/swipl-devel/src/os/pl-file.c | 166 src/swipl-devel/src/os/pl-file.h | 18 src/swipl-devel/src/os/pl-fmt.c | 4 src/swipl-devel/src/os/pl-prologflag.c | 10 src/swipl-devel/src/os/pl-stream.c | 71 src/swipl-devel/src/os/pl-stream.h | 9 src/swipl-devel/src/pl-atom.c | 6 src/swipl-devel/src/pl-bag.c | 81 src/swipl-devel/src/pl-bag.h | 4 src/swipl-devel/src/pl-coverage.c | 4 src/swipl-devel/src/pl-debug.c | 2 src/swipl-devel/src/pl-debug.h | 2 src/swipl-devel/src/pl-ext.c | 2 src/swipl-devel/src/pl-fli.c | 12 src/swipl-devel/src/pl-global.h | 20 src/swipl-devel/src/pl-init.c | 237 - src/swipl-devel/src/pl-init.h | 2 src/swipl-devel/src/pl-nt.c | 21 src/swipl-devel/src/pl-ntmain.c | 29 src/swipl-devel/src/pl-qlf.c | 64 src/swipl-devel/src/pl-segstack.c | 40 src/swipl-devel/src/pl-segstack.h | 7 src/swipl-devel/src/pl-setup.c | 10 src/swipl-devel/src/pl-string.c | 4 src/swipl-devel/src/pl-thread.c | 87 src/swipl-devel/src/pl-thread.h | 8 src/swipl-devel/src/pl-trace.c | 2 src/swipl-devel/src/pl-write.c | 5 src/swipl-devel/src/test.pl | 30 src/swipl-devel/src/wasm/README.md |only src/swipl-devel/src/wasm/bind.html |only src/swipl-devel/src/wasm/index.html | 1 src/swipl-devel/src/wasm/prolog.js | 1 src/swipl-devel/src/wasm/runtime_exports.json | 1 src/swipl-devel/src/wasm/server.pl | 34 src/swipl-devel/src/wasm/shell.html | 4 131 files changed, 5506 insertions(+), 3007 deletions(-)
Title: Execute and Control System Processes
Description: Tools to run system processes in the background. It can
check if a background process is running; wait on a background process
to finish; get the exit status of finished processes; kill background
processes. It can read the standard output and error of the processes,
using non-blocking connections. 'processx' can poll a process for
standard output or error, with a timeout. It can also poll several
processes at once.
Author: Gabor Csardi [aut, cre, cph] ,
Winston Chang [aut],
Posit Software, PBC [cph, fnd],
Ascent Digital Services [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between processx versions 3.8.3 dated 2023-12-10 and 3.8.4 dated 2024-03-16
DESCRIPTION | 12 ++++++------ LICENSE | 4 ++-- MD5 | 13 +++++++------ NEWS.md | 4 ++++ README.md | 2 +- inst/COPYRIGHTS |only man/processx-package.Rd | 2 +- src/init.c | 19 +++++++++++++++++++ 8 files changed, 40 insertions(+), 16 deletions(-)
Title: High Performance Implementation of the Naive Bayes Algorithm
Description: In this implementation of the Naive Bayes classifier
following class conditional distributions are available: 'Bernoulli',
'Categorical', 'Gaussian', 'Poisson', 'Multinomial' and non-parametric
representation of the class conditional density estimated via Kernel
Density Estimation. Implemented classifiers handle missing data and
can take advantage of sparse data.
Author: Michal Majka [aut, cre]
Maintainer: Michal Majka <michalmajka@hotmail.com>
Diff between naivebayes versions 0.9.7 dated 2020-03-08 and 1.0.0 dated 2024-03-16
DESCRIPTION | 29 + MD5 | 64 +-- R/bernoulli_naive_bayes.R | 17 - R/gaussian_naive_bayes.R | 12 R/misc.R | 9 R/multinomial_naive_bayes.R | 15 R/nonparametric_naive_bayes.R | 15 R/poisson_naive_bayes.R | 17 - R/predict.naive_bayes.R | 21 - R/print.naive_bayes.R | 12 R/print.naive_bayes_tables.R | 33 - R/summary.naive_bayes.R | 5 build/vignette.rds |binary inst/CITATION | 2 inst/NEWS.Rd | 13 inst/doc/intro_naivebayes.R | 246 +++++++++----- inst/doc/intro_naivebayes.Rnw | 493 +++++++++++++++++++---------- inst/doc/intro_naivebayes.pdf |binary man/bernoulli_naive_bayes.Rd | 1 man/figures/kde-1.png |binary man/figures/kde-2.png |binary man/figures/kde_adjust-1.png |binary man/figures/kde_bw-1.png |binary man/figures/kde_kernel-1.png |binary man/figures/poisson-1.png |binary man/figures/poisson-2.png |binary man/gaussian_naive_bayes.Rd | 2 man/multinomial_naive_bayes.Rd | 29 + man/naivebayes.Rd | 31 + man/nonparametric_naive_bayes.Rd | 2 man/poisson_naive_bayes.Rd | 1 vignettes/intro_naivebayes-concordance.tex | 4 vignettes/intro_naivebayes.Rnw | 493 +++++++++++++++++++---------- 33 files changed, 1026 insertions(+), 540 deletions(-)
Title: Package for Community Ecology and Suitability Analysis
Description: Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between BiodiversityR versions 2.15-4 dated 2023-10-22 and 2.16-1 dated 2024-03-16
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- NAMESPACE | 1 + R/treegoer.R |only inst/ChangeLog | 12 +++++++++++- man/treegoer.Rd |only 6 files changed, 21 insertions(+), 8 deletions(-)
Title: Wrapper for 'Visa Chart Components'
Description: Provides a set of wrapper functions for 'Visa Chart Components'.
'Visa Chart Components' <https://github.com/visa/visa-chart-components> is an accessibility focused,
framework agnostic set of data experience design systems components for the web.
Author: Christopher DeMartini [aut, cre],
Stephanie Modica [aut],
David Kutas [aut],
Jaime Tanner [aut],
Frank Elavsky [aut],
Wojtek Kostelecki [ctb],
Visa Data Experience Team [aut, fnd],
Visa, Inc. [cph]
Maintainer: Christopher DeMartini <chris.demartini.npm@gmail.com>
Diff between visachartR versions 3.2.0 dated 2023-10-06 and 3.3.0 dated 2024-03-16
visachartR-3.2.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-02a12e6e.system.entry.js |only visachartR-3.2.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-033e8797.js |only visachartR-3.2.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-0a4325d4.entry.js |only visachartR-3.2.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-10e6839b.js |only visachartR-3.2.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-10f35386.entry.js |only visachartR-3.2.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-13680a52.system.entry.js |only visachartR-3.2.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-17a4b994.entry.js |only visachartR-3.2.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-19a4f06b.js |only visachartR-3.2.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-1c8b622e.entry.js |only visachartR-3.2.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-2c07c4b3.js |only 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visachartR-3.3.0/visachartR/inst/htmlwidgets/visaChart.yaml | 4 visachartR-3.3.0/visachartR/inst/htmlwidgets/visaNodeLinkChart.yaml | 4 103 files changed, 82 insertions(+), 64 deletions(-)
Title: Fit Multivariate Diversity-Interactions Models with Repeated
Measures
Description: An add-on package to 'DImodels' for the fitting of biodiversity and ecosystem function relationship study data with multiple ecosystem function responses and/or time points. This package uses the multivariate and repeated measures Diversity-Interactions (DI) methods developed by Kirwan et al. (2009) <doi:10.1890/08-1684.1>, Finn et al. (2013) <doi:10.1111/1365-2664.12041>, and Dooley et al. (2015) <doi:10.1111/ele.12504>.
Author: Laura Byrne [aut, cre] ,
Rishabh Vishwakarma [aut],
Rafael de Andrade Moral [aut],
Caroline Brophy [aut]
Maintainer: Laura Byrne <ByrneL54@tcd.ie>
Diff between DImodelsMulti versions 1.0 dated 2024-01-16 and 1.0.1 dated 2024-03-16
DESCRIPTION | 6 MD5 | 20 - R/DImulti_fit.R | 32 +- R/DImulti_vcov.R | 4 build/vignette.rds |binary inst/doc/DImulti_onTheta.Rmd | 2 inst/doc/DImulti_workflow.R | 17 - inst/doc/DImulti_workflow.Rmd | 36 +- inst/doc/DImulti_workflow.html | 525 +++++++++++++++++------------------------ vignettes/DImulti_onTheta.Rmd | 2 vignettes/DImulti_workflow.Rmd | 36 +- 11 files changed, 297 insertions(+), 383 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-01 2.4
2022-11-15 2.3
Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] ,
Posit Software, PBC [cph, fnd],
Christophe Dervieux [ctb] ,
Devon Ryan [ctb] ,
Ethan Heinzen [ctb],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.49 dated 2023-11-22 and 0.50 dated 2024-03-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/install.R | 12 ++++++++++-- R/tlmgr.R | 2 +- man/install_tinytex.Rd | 3 ++- 5 files changed, 21 insertions(+), 12 deletions(-)
Title: Generalized Two Arms Clinical Trial Sample Size Calculation
Description: Two arms clinical trials required sample size is calculated in the comprehensive parametric context. The calculation is based on the type of endpoints(continuous/binary/time-to-event/ordinal), design (parallel/crossover), hypothesis tests (equality/noninferiority/superiority/equivalence), trial arms noncompliance rates and expected loss of follow-up. Methods are described in: Chow SC, Shao J, Wang H, Lokhnygina Y (2017) <doi:10.1201/9781315183084>, Wittes, J (2002) <doi:10.1093/epirev/24.1.39>, Sato, T (2000) <doi:10.1002/1097-0258(20001015)19:19%3C2689::aid-sim555%3E3.0.co;2-0>, Lachin J M, Foulkes, M A (1986) <doi:10.2307/2531201>, Whitehead J(1993) <doi:10.1002/sim.4780122404>, Julious SA (2023) <doi:10.1201/9780429503658>.
Author: Mohsen Soltanifar [aut] ,
Chel Hee Lee [cre, aut]
Maintainer: Chel Hee Lee <chelhee.lee@ucalgary.ca>
Diff between GenTwoArmsTrialSize versions 0.0.4.5 dated 2023-12-11 and 0.0.5 dated 2024-03-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/main.R | 36 ++++++++++++++++++------------------ inst/doc/tutorial.html | 4 ++-- 4 files changed, 26 insertions(+), 26 deletions(-)
More information about GenTwoArmsTrialSize at CRAN
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