Title: Scientific Journal and Sci-Fi Themed Color Palettes for
'ggplot2'
Description: A collection of 'ggplot2' color palettes inspired by
plots in scientific journals, data visualization libraries,
science fiction movies, and TV shows.
Author: Nan Xiao [aut, cre] ,
Joshua Cook [ctb],
Clara Jegousse [ctb],
Miaozhu Li [ctb]
Maintainer: Nan Xiao <me@nanx.me>
Diff between ggsci versions 3.0.1 dated 2024-03-02 and 3.0.2 dated 2024-03-17
DESCRIPTION | 8 ++-- MD5 | 92 +++++++++++++++++++++++----------------------- NEWS.md | 7 +++ R/continuous-gsea.R | 5 +- R/continuous-material.R | 45 +++++++++++----------- R/discrete-aaas.R | 12 +++--- R/discrete-cosmic.R | 24 ++++++------ R/discrete-d3.R | 6 +-- R/discrete-flatui.R | 6 +-- R/discrete-frontiers.R | 12 +++--- R/discrete-futurama.R | 12 +++--- R/discrete-igv.R | 6 +-- R/discrete-jama.R | 16 ++++---- R/discrete-jco.R | 16 ++++---- R/discrete-lancet.R | 16 ++++---- R/discrete-locuszoom.R | 16 ++++---- R/discrete-nejm.R | 16 ++++---- R/discrete-npg.R | 16 ++++---- R/discrete-rickandmorty.R | 16 ++++---- R/discrete-simpsons.R | 16 ++++---- R/discrete-startrek.R | 16 ++++---- R/discrete-tron.R | 16 ++++---- R/discrete-uchicago.R | 6 +-- R/discrete-ucscgb.R | 16 ++++---- README.md | 4 +- build/vignette.rds |binary inst/doc/ggsci-faq.html | 2 - inst/doc/ggsci.Rmd | 12 +++--- inst/doc/ggsci.html | 69 +++++++++++++++++----------------- man/scale_aaas.Rd | 6 ++- man/scale_cosmic.Rd | 6 ++- man/scale_frontiers.Rd | 6 ++- man/scale_futurama.Rd | 6 ++- man/scale_gsea.Rd | 3 + man/scale_jama.Rd | 6 ++- man/scale_jco.Rd | 6 ++- man/scale_lancet.Rd | 6 ++- man/scale_locuszoom.Rd | 6 ++- man/scale_material.Rd | 3 + man/scale_nejm.Rd | 6 ++- man/scale_npg.Rd | 6 ++- man/scale_rickandmorty.Rd | 6 ++- man/scale_simpsons.Rd | 6 ++- man/scale_startrek.Rd | 6 ++- man/scale_tron.Rd | 6 ++- man/scale_ucscgb.Rd | 6 ++- vignettes/ggsci.Rmd | 12 +++--- 47 files changed, 341 insertions(+), 271 deletions(-)
Title: Regression with Multiple Change Points
Description: Flexible and informed regression with Multiple Change Points. 'mcp' can infer change points in means, variances, autocorrelation structure, and any combination of these, as well as the parameters of the segments in between. All parameters are estimated with uncertainty and prediction intervals are supported - also near the change points. 'mcp' supports hypothesis testing via Savage-Dickey density ratio, posterior contrasts, and cross-validation. 'mcp' is described in Lindeløv (submitted) <doi:10.31219/osf.io/fzqxv> and generalizes the approach described in Carlin, Gelfand, & Smith (1992) <doi:10.2307/2347570> and Stephens (1994) <doi:10.2307/2986119>.
Author: Jonas Kristoffer Lindeloev [aut, cre]
Maintainer: Jonas Kristoffer Lindeloev <jonas@lindeloev.dk>
Diff between mcp versions 0.3.3 dated 2023-03-22 and 0.3.4 dated 2024-03-17
DESCRIPTION | 12 ++++++------ MD5 | 31 ++++++++++++++++--------------- NEWS.md | 13 ++++++++++++- R/get_formula.R | 5 +---- R/mcp-package.R | 28 ++-------------------------- R/mcpfit_methods.R | 13 +++++++------ R/misc.R | 13 ++++++++----- R/plot.R | 3 --- R/run_jags.R | 2 +- build |only man/fitted.mcpfit.Rd | 2 +- man/geom_cp_density.Rd | 4 ---- man/get_simulate.Rd | 9 ++------- man/mcp-package.Rd | 29 +++++++++++++---------------- man/pp_eval.Rd | 5 +++-- man/predict.mcpfit.Rd | 2 +- man/residuals.mcpfit.Rd | 2 +- 17 files changed, 74 insertions(+), 99 deletions(-)
Title: A 'DuckDB'-Backed Version of 'dplyr'
Description: A drop-in replacement for 'dplyr', powered by 'DuckDB' for performance.
Also defines a set of generics that provide a low-level
implementer's interface for the high-level user interface of 'dplyr'.
Author: Hannes Muehleisen [aut] ,
Kirill Mueller [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckplyr versions 0.3.1 dated 2024-03-10 and 0.3.2 dated 2024-03-17
duckplyr-0.3.1/duckplyr/R/csv.R |only duckplyr-0.3.2/duckplyr/DESCRIPTION | 7 - duckplyr-0.3.2/duckplyr/MD5 | 18 +-- duckplyr-0.3.2/duckplyr/NAMESPACE | 5 duckplyr-0.3.2/duckplyr/NEWS.md | 11 + duckplyr-0.3.2/duckplyr/R/fallback.R | 8 + duckplyr-0.3.2/duckplyr/R/io-csv.R |only duckplyr-0.3.2/duckplyr/R/io-parquet.R |only duckplyr-0.3.2/duckplyr/R/io.R |only duckplyr-0.3.2/duckplyr/man/df_from_file.Rd | 83 ++++++++++++--- duckplyr-0.3.2/duckplyr/tests/testthat/_snaps/select.md | 2 duckplyr-0.3.2/duckplyr/tests/testthat/test-io-csv.R |only duckplyr-0.3.2/duckplyr/tests/testthat/test-io-parquet.R |only 13 files changed, 107 insertions(+), 27 deletions(-)
Title: Create and Evaluate Stopping Rules for Safety Monitoring
Description: Provides functions for creating, displaying, and evaluating stopping rules for safety monitoring in clinical studies. Implements stopping rule methods described in Goldman (1987) <doi:10.1016/0197-2456(87)90153-X>; Geller et al. (2003, ISBN:9781135524388); Ivanova, Qaqish, and Schell (2005) <doi:10.1111/j.1541-0420.2005.00311.x>; Chen and Chaloner (2006) <doi:10.1002/sim.2429>; and Kulldorff et al. (2011) <doi:10.1080/07474946.2011.539924>.
Author: Michael J. Martens [aut,cre], Qinghua Lian [aut], Brent R. Logan [ctb]
Maintainer: Michael J. Martens <mmartens@mcw.edu>
Diff between stoppingrule versions 0.3.0 dated 2023-09-01 and 0.4.0 dated 2024-03-17
DESCRIPTION | 10 +-- MD5 | 96 +++++++++++++++++-------------- NAMESPACE | 5 + R/OC.rule.R |only R/OC.rule.bin.R | 44 ++++++++++---- R/OC.rule.surv.R | 67 +++++++++++++++++---- R/bdryfcn.R |only R/bdryfcn.bin.R | 4 - R/bdryfcn.surv.R | 14 ++-- R/calc.bnd.bin.R | 4 - R/calc.bnd.surv.R | 15 ++-- R/calc.rule.R |only R/calc.rule.bin.R | 20 +++++- R/calc.rule.surv.R | 33 ++++++++-- R/findconst.bin.R | 2 R/findconst.surv.R | 14 ++-- R/lines.rule.bin.R | 7 +- R/lines.rule.surv.R | 10 +-- R/opchars.bin.R | 130 ++++++++++++++++++++++++++++++++---------- R/opchars.surv.R | 25 ++++++-- R/plot.rule.bin.R | 7 +- R/plot.rule.surv.R | 8 +- R/simdata_weibull.R |only R/simtrials.surv.R |only R/stopping.prob.surv.R | 2 R/stoppingrule.R | 1 R/table.rule.bin.R | 2 R/table.rule.surv.R | 11 +-- README.md | 60 ++++++++++--------- man/OC.rule.Rd |only man/OC.rule.bin.Rd | 22 +++++-- man/OC.rule.surv.Rd | 46 ++++++++++++-- man/bdryfcn.Rd |only man/bdryfcn.bin.Rd | 4 - man/bdryfcn.surv.Rd | 12 +-- man/calc.bnd.bin.Rd | 4 - man/calc.bnd.surv.Rd | 6 - man/calc.rule.Rd |only man/calc.rule.bin.Rd | 20 +++++- man/calc.rule.surv.Rd | 33 ++++++++-- man/figures/README-plot-1.png |binary man/findconst.bin.Rd | 2 man/findconst.surv.Rd | 10 +-- man/lines.rule.bin.Rd | 7 +- man/lines.rule.surv.Rd | 10 +-- man/opchars.bin.Rd | 10 ++- man/opchars.surv.Rd | 14 +++- man/plot.rule.bin.Rd | 7 +- man/plot.rule.surv.Rd | 8 +- man/simdata_weibull.Rd |only man/simtrials.surv.Rd |only man/stopping.prob.surv.Rd | 2 man/table.rule.bin.Rd | 2 man/table.rule.surv.Rd | 6 - 54 files changed, 563 insertions(+), 253 deletions(-)
Title: Monte Carlo Confidence Intervals in Structural Equation Modeling
Description: Monte Carlo confidence intervals for free and defined parameters
in models fitted in the structural equation modeling package 'lavaan'
can be generated using the 'semmcci' package.
'semmcci' has three main functions, namely, MC(), MCMI(), and MCStd().
The output of 'lavaan' is passed as the first argument
to the MC() function or the MCMI() function to generate Monte Carlo confidence intervals.
Monte Carlo confidence intervals for the standardized estimates
can also be generated by passing the output of the MC() function or the MCMI() function
to the MCStd() function.
A description of the package and code examples
are presented in Pesigan and Cheung (2023) <doi:10.3758/s13428-023-02114-4>.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph]
,
Shu Fai Cheung [ctb]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between semmcci versions 1.1.3 dated 2023-10-14 and 1.1.4 dated 2024-03-17
DESCRIPTION | 10 +- MD5 | 48 ++++++----- NAMESPACE | 2 NEWS.md | 4 R/semmcci-func.R |only R/semmcci-mc-ci-dot.R | 5 - R/semmcci-mc-func.R |only R/semmcci-mc-generic.R | 4 R/semmcci-mc-mi.R | 8 + R/semmcci-mc-std.R | 4 R/semmcci-mc.R | 2 R/semmcci-methods.R | 37 ++++---- build/partial.rdb |binary inst/CITATION | 2 man/Func.Rd |only man/MC.Rd | 4 man/MCFunc.Rd |only man/MCGeneric.Rd | 10 +- man/MCMI.Rd | 8 + man/MCStd.Rd | 10 +- man/coef.semmcci.Rd | 6 - man/confint.semmcci.Rd | 6 - man/print.semmcci.Rd | 6 - man/semmcci-package.Rd | 2 man/summary.semmcci.Rd | 6 - man/vcov.semmcci.Rd | 6 - tests/testthat/test-semmcci-mc-func-simple-med.R |only tests/testthat/test-semmcci-mc-simple-med-defined-equality.R |only 28 files changed, 110 insertions(+), 80 deletions(-)
Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and
more reliable. In particular, it performs all HTTP operations in
parallel, so metadata resolution and package downloads are fast.
Metadata and package files are cached on the local disk as well. 'pak'
has a dependency solver, so it finds version conflicts before
performing the installation. This version of 'pak' supports CRAN,
'Bioconductor' and 'GitHub' packages as well.
Author: Gabor Csardi [aut, cre],
Jim Hester [aut],
Posit Software, PBC [cph, fnd],
Winston Chang [ctb] ,
Ascent Digital Services [cph, fnd] ,
Hadley Wickham [ctb, cph] ,
Jeroen Ooms [ctb] ,
Maelle Salmon [ctb] ,
Duncan Temple Lang [ctb] ,
Lloyd Hilaiel [cph] [...truncated...]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pak versions 0.7.1 dated 2023-12-10 and 0.7.2 dated 2024-03-17
pak-0.7.1/pak/src/library/filelock.patch |only pak-0.7.1/pak/src/library/ps.patch |only pak-0.7.2/pak/DESCRIPTION | 20 - pak-0.7.2/pak/MD5 | 188 +++++----- pak-0.7.2/pak/NEWS.md | 7 pak-0.7.2/pak/R/embed.R | 1 pak-0.7.2/pak/R/pak-sitrep.R | 4 pak-0.7.2/pak/inst/COPYRIGHTS |only pak-0.7.2/pak/man/chunks/sysreqs.Rmd | 2 pak-0.7.2/pak/man/chunks/tldr.Rmd | 2 pak-0.7.2/pak/man/pak-package.Rd | 2 pak-0.7.2/pak/src/dummy |only pak-0.7.2/pak/src/install-embedded.R | 76 +++- pak-0.7.2/pak/src/library/callr/DESCRIPTION | 28 - pak-0.7.2/pak/src/library/callr/LICENSE | 4 pak-0.7.2/pak/src/library/callr/NEWS.md | 13 pak-0.7.2/pak/src/library/callr/R/aaa-rstudio-detect.R | 2 pak-0.7.2/pak/src/library/callr/R/errors.R | 63 ++- pak-0.7.2/pak/src/library/callr/R/eval-bg.R | 2 pak-0.7.2/pak/src/library/callr/R/load-client.R | 19 - pak-0.7.2/pak/src/library/callr/R/package.R | 20 - pak-0.7.2/pak/src/library/callr/R/r-session.R | 8 pak-0.7.2/pak/src/library/callr/R/result.R | 4 pak-0.7.2/pak/src/library/callr/R/rscript.R | 2 pak-0.7.2/pak/src/library/callr/R/script.R | 84 ++-- pak-0.7.2/pak/src/library/callr/inst/WORDLIST | 1 pak-0.7.2/pak/src/library/cli/DESCRIPTION | 6 pak-0.7.2/pak/src/library/cli/NEWS.md | 2 pak-0.7.2/pak/src/library/curl/DESCRIPTION | 10 pak-0.7.2/pak/src/library/curl/NAMESPACE | 1 pak-0.7.2/pak/src/library/curl/NEWS | 10 pak-0.7.2/pak/src/library/curl/R/email.R | 11 pak-0.7.2/pak/src/library/curl/R/handle.R | 21 - pak-0.7.2/pak/src/library/curl/src/Makevars.in | 2 pak-0.7.2/pak/src/library/curl/src/Makevars.win | 2 pak-0.7.2/pak/src/library/curl/src/callbacks.c | 18 pak-0.7.2/pak/src/library/curl/src/curl.c | 24 - pak-0.7.2/pak/src/library/curl/src/download.c | 28 - pak-0.7.2/pak/src/library/curl/src/escape.c | 8 pak-0.7.2/pak/src/library/curl/src/fetch.c | 22 - pak-0.7.2/pak/src/library/curl/src/findport.c | 2 pak-0.7.2/pak/src/library/curl/src/form.c | 30 - pak-0.7.2/pak/src/library/curl/src/getdate.c | 8 pak-0.7.2/pak/src/library/curl/src/handle.c | 138 +++---- pak-0.7.2/pak/src/library/curl/src/ieproxy.c | 68 +-- pak-0.7.2/pak/src/library/curl/src/init.c | 1 pak-0.7.2/pak/src/library/curl/src/multi.c | 74 +-- pak-0.7.2/pak/src/library/curl/src/nslookup.c | 6 pak-0.7.2/pak/src/library/curl/src/reflist.c | 8 pak-0.7.2/pak/src/library/curl/src/split.c | 6 pak-0.7.2/pak/src/library/curl/src/utils.c | 18 pak-0.7.2/pak/src/library/curl/src/version.c | 44 +- pak-0.7.2/pak/src/library/curl/src/writer.c | 6 pak-0.7.2/pak/src/library/curl/vignettes/intro.Rmd | 15 pak-0.7.2/pak/src/library/filelock/DESCRIPTION | 30 + pak-0.7.2/pak/src/library/filelock/LICENSE | 4 pak-0.7.2/pak/src/library/filelock/NEWS.md | 7 pak-0.7.2/pak/src/library/filelock/R/filelock-package.R |only pak-0.7.2/pak/src/library/filelock/R/package.R | 9 pak-0.7.2/pak/src/library/pkgbuild/DESCRIPTION | 6 pak-0.7.2/pak/src/library/pkgbuild/NEWS.md | 4 pak-0.7.2/pak/src/library/pkgbuild/R/rtools.R | 40 ++ pak-0.7.2/pak/src/library/pkgdepends/DESCRIPTION | 6 pak-0.7.2/pak/src/library/pkgdepends/R/install-plan.R | 23 - pak-0.7.2/pak/src/library/pkgdepends/R/parse-remotes.R | 6 pak-0.7.2/pak/src/library/pkgdepends/R/resolution.R | 4 pak-0.7.2/pak/src/library/pkgdepends/inst/docs/download-result.rds |binary pak-0.7.2/pak/src/library/pkgdepends/inst/docs/resolution-result.rds |binary pak-0.7.2/pak/src/library/processx.patch |only pak-0.7.2/pak/src/library/processx/DESCRIPTION | 12 pak-0.7.2/pak/src/library/processx/LICENSE | 4 pak-0.7.2/pak/src/library/processx/NEWS.md | 4 pak-0.7.2/pak/src/library/processx/R/client-lib.R | 4 pak-0.7.2/pak/src/library/processx/R/on-load.R | 3 pak-0.7.2/pak/src/library/processx/src/init.c | 19 + pak-0.7.2/pak/src/library/ps/DESCRIPTION | 18 pak-0.7.2/pak/src/library/ps/LICENSE | 4 pak-0.7.2/pak/src/library/ps/NEWS.md | 8 pak-0.7.2/pak/src/library/ps/R/linux.R | 6 pak-0.7.2/pak/src/library/ps/R/low-level.R | 4 pak-0.7.2/pak/src/library/ps/configure | 4 pak-0.7.2/pak/src/library/ps/src/api-linux.c | 2 pak-0.7.2/pak/src/library/ps/src/arch/windows/process_handles.c | 1 pak-0.7.2/pak/src/library/zip/DESCRIPTION | 32 + pak-0.7.2/pak/src/library/zip/LICENSE | 2 pak-0.7.2/pak/src/library/zip/NEWS.md | 5 pak-0.7.2/pak/src/library/zip/R/zip-package.R |only pak-0.7.2/pak/src/library/zip/src/Makevars | 2 pak-0.7.2/pak/src/library/zip/src/init.c | 4 89 files changed, 868 insertions(+), 550 deletions(-)
Title: Package Dependency Resolution and Downloads
Description: Find recursive dependencies of 'R' packages from various
sources. Solve the dependencies to obtain a consistent set of packages
to install. Download packages, and install them. It supports packages
on 'CRAN', 'Bioconductor' and other 'CRAN-like' repositories,
'GitHub', package 'URLs', and local package trees and files. It caches
metadata and package files via the 'pkgcache' package, and performs
all 'HTTP' requests, downloads, builds and installations in parallel.
'pkgdepends' is the workhorse of the 'pak' package.
Author: Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pkgdepends versions 0.7.1 dated 2023-12-10 and 0.7.2 dated 2024-03-17
DESCRIPTION | 6 ++--- MD5 | 24 +++++++++++++-------- R/install-plan.R | 23 ++++++++++++++++---- R/parse-remotes.R | 6 ++--- R/resolution.R | 4 +-- tests/testthat/_snaps/install-plan.md | 32 +++++++++++++++++++++++++++++ tests/testthat/fixtures/packages/badbuild |only tests/testthat/fixtures/packages/goodbuild |only tests/testthat/setup.R | 8 +++++++ tests/testthat/test-assertions.R | 13 +++++++++++ tests/testthat/test-assertthat.R | 1 tests/testthat/test-install-plan.R | 28 +++++++++++++++++++++++++ 12 files changed, 123 insertions(+), 22 deletions(-)
Title: Find Tools Needed to Build R Packages
Description: Provides functions used to build R packages. Locates
compilers needed to build R packages on various platforms and ensures
the PATH is configured appropriately so R can use them.
Author: Hadley Wickham [aut],
Jim Hester [aut],
Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pkgbuild versions 1.4.3 dated 2023-12-10 and 1.4.4 dated 2024-03-17
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/rtools.R | 40 +++++++++++++++++++++++++++++++++++++++- tests/testthat/test-build.R | 3 +++ 5 files changed, 53 insertions(+), 8 deletions(-)
Title: R Package Installation from Remote Repositories, Including
'GitHub'
Description: Download and install R packages stored in 'GitHub', 'GitLab',
'Bitbucket', 'Bioconductor', or plain 'subversion' or 'git'
repositories. This package provides the 'install_*' functions in
'devtools'. Indeed most of the code was copied over from 'devtools'.
Author: Gabor Csardi [aut, cre],
Jim Hester [aut],
Hadley Wickham [aut],
Winston Chang [aut],
Martin Morgan [aut],
Dan Tenenbaum [aut],
Posit Software, PBC [cph, fnd],
Ascent Digital Services [cph]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between remotes versions 2.4.2.1 dated 2023-07-18 and 2.5.0 dated 2024-03-17
remotes-2.4.2.1/remotes/tests/testthat/github-error-local.txt |only remotes-2.4.2.1/remotes/tests/testthat/github-error-travis.txt |only remotes-2.5.0/remotes/DESCRIPTION | 42 remotes-2.5.0/remotes/LICENSE | 4 remotes-2.5.0/remotes/MD5 | 119 - remotes-2.5.0/remotes/NAMESPACE | 3 remotes-2.5.0/remotes/NEWS.md | 15 remotes-2.5.0/remotes/R/bioc-standalone.R | 26 remotes-2.5.0/remotes/R/deps.R | 4 remotes-2.5.0/remotes/R/git-auth.R |only remotes-2.5.0/remotes/R/github.R | 29 remotes-2.5.0/remotes/R/install-bioc.R | 1 remotes-2.5.0/remotes/R/install-dev.R | 2 remotes-2.5.0/remotes/R/install-gitlab.R | 2 remotes-2.5.0/remotes/R/install-remote.R | 5 remotes-2.5.0/remotes/R/package.R | 2 remotes-2.5.0/remotes/R/remotes-package.R |only remotes-2.5.0/remotes/R/system_requirements.R | 6 remotes-2.5.0/remotes/README.md | 227 +- remotes-2.5.0/remotes/build/vignette.rds |binary remotes-2.5.0/remotes/inst/COPYRIGHTS |only remotes-2.5.0/remotes/inst/doc/dependencies.Rmd | 4 remotes-2.5.0/remotes/inst/doc/dependencies.html | 421 +++- remotes-2.5.0/remotes/inst/install-github.R | 906 +++++++++- remotes-2.5.0/remotes/man/install_gitlab.Rd | 4 remotes-2.5.0/remotes/man/remotes-package.Rd |only remotes-2.5.0/remotes/tests/testthat.R | 12 remotes-2.5.0/remotes/tests/testthat/_snaps |only remotes-2.5.0/remotes/tests/testthat/archives/foo/DESCRIPTION | 2 remotes-2.5.0/remotes/tests/testthat/helper.R | 18 remotes-2.5.0/remotes/tests/testthat/submodule/DESCRIPTION | 2 remotes-2.5.0/remotes/tests/testthat/test-bioc.R | 5 remotes-2.5.0/remotes/tests/testthat/test-cran.R | 3 remotes-2.5.0/remotes/tests/testthat/test-dcf.R | 3 remotes-2.5.0/remotes/tests/testthat/test-decompress.R | 3 remotes-2.5.0/remotes/tests/testthat/test-deps.R | 21 remotes-2.5.0/remotes/tests/testthat/test-devel.R | 2 remotes-2.5.0/remotes/tests/testthat/test-download.R | 3 remotes-2.5.0/remotes/tests/testthat/test-git.R | 3 remotes-2.5.0/remotes/tests/testthat/test-github.R | 21 remotes-2.5.0/remotes/tests/testthat/test-install-bioc.R | 2 remotes-2.5.0/remotes/tests/testthat/test-install-bitbucket.R | 3 remotes-2.5.0/remotes/tests/testthat/test-install-cran.R | 8 remotes-2.5.0/remotes/tests/testthat/test-install-deps.R | 3 remotes-2.5.0/remotes/tests/testthat/test-install-dev.R | 11 remotes-2.5.0/remotes/tests/testthat/test-install-git.R | 95 - remotes-2.5.0/remotes/tests/testthat/test-install-github.R | 10 remotes-2.5.0/remotes/tests/testthat/test-install-gitlab.R | 14 remotes-2.5.0/remotes/tests/testthat/test-install-local.R | 3 remotes-2.5.0/remotes/tests/testthat/test-install-remote.R | 2 remotes-2.5.0/remotes/tests/testthat/test-install-svn.R | 88 remotes-2.5.0/remotes/tests/testthat/test-install-url.R | 5 remotes-2.5.0/remotes/tests/testthat/test-install-version.R | 7 remotes-2.5.0/remotes/tests/testthat/test-install.R | 2 remotes-2.5.0/remotes/tests/testthat/test-json.R | 3 remotes-2.5.0/remotes/tests/testthat/test-package-deps.R | 3 remotes-2.5.0/remotes/tests/testthat/test-package.R | 2 remotes-2.5.0/remotes/tests/testthat/test-parse-git.R | 2 remotes-2.5.0/remotes/tests/testthat/test-script.R | 7 remotes-2.5.0/remotes/tests/testthat/test-submodule.R | 2 remotes-2.5.0/remotes/tests/testthat/test-system.R | 3 remotes-2.5.0/remotes/tests/testthat/test-system_requirements.R | 17 remotes-2.5.0/remotes/tests/testthat/test-utils.R | 3 remotes-2.5.0/remotes/vignettes/dependencies.Rmd | 4 64 files changed, 1567 insertions(+), 652 deletions(-)
Title: Interface Between 'GRASS' Geographical Information System and
'R'
Description: An interface between the 'GRASS' geographical information system ('GIS') and 'R', based on starting 'R' from within the 'GRASS' 'GIS' environment, or running a free-standing 'R' session in a temporary 'GRASS' location; the package provides facilities for using all 'GRASS' commands from the 'R' command line. The original interface package for 'GRASS 5' (2000-2010) is described in Bivand (2000) <doi:10.1016/S0098-3004(00)00057-1> and Bivand (2001) <https://www.r-project.org/conferences/DSC-2001/Proceedings/Bivand.pdf>. This was succeeded by 'spgrass6' for 'GRASS 6' (2006-2016) and 'rgrass7' for 'GRASS 7' (2015-present). The 'rgrass' package modernizes the interface for 'GRASS 8' while still permitting the use of 'GRASS 7'.
Author: Roger Bivand [cre, aut] ,
Rainer Krug [ctb] ,
Robin Lovelace [ctb] ,
Markus Neteler [ctb] ,
Sebastian Jeworutzki [ctb] ,
Floris Vanderhaeghe [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgrass versions 0.4-1 dated 2024-01-08 and 0.4-2 dated 2024-03-17
DESCRIPTION | 8 +++--- MD5 | 16 ++++++------ NEWS.md | 6 +++- R/rast_link.R | 52 +++++++++++++++++++++++++++++++++-------- build/vignette.rds |binary inst/doc/coerce.html | 6 ++-- man/readRAST.Rd | 23 +++++++++++++++++- tests/test_XML_xml2.Rout.save | 8 +++--- tests/test_terra_ptr.Rout.save | 8 +++--- 9 files changed, 92 insertions(+), 35 deletions(-)
Title: Creates an 'igraph' Object that Duplicates Nodes with Self-Loops
Description: Creates a new graph from an existing one, duplicating nodes
with self-loops. This can be used for a computation of betweenness
centrality that does not drop this essential information. Implements
Merelo & Molinari (2024) <doi:10.1007/s42001-023-00245-4>.
Author: Juan Julian Merelo-Guervos
Maintainer: Juan Julian Merelo-Guervos <jjmerelo@gmail.com>
Diff between dupNodes versions 0.1.0 dated 2024-02-05 and 0.2.0 dated 2024-03-17
DESCRIPTION | 15 ++++++++------- MD5 | 27 +++++++++++++++++++-------- NAMESPACE | 4 ++-- NEWS.md | 7 +++++++ R/dup.nodes.from.graph.R |only R/florentine.sn.R |only README.md | 19 +++++++++++++------ build/partial.rdb |binary build/vignette.rds |binary data |only inst/auto/florentine-families.el |only inst/doc/doges-social-network.html | 21 +++++++++++++-------- inst/doc/florentine-social-network.R |only inst/doc/florentine-social-network.Rmd |only inst/doc/florentine-social-network.html |only inst/florentine-families.bib |only man/dup.nodes.from.graph.Rd |only man/florentine.sn.Rd |only tests/testthat/test-dup.nodes.from.R | 28 ++++++++++++++++++++++++++++ vignettes/florentine-social-network.Rmd |only 20 files changed, 90 insertions(+), 31 deletions(-)
More information about tsdistributions at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-26 0.1.7
Title: Flexible Estimation of Conditional Survival Functions Using
Machine Learning
Description: Tools for flexible estimation of conditional survival
functions using off-the-shelf machine learning tools. Implements both
global and local survival stacking. See Wolock CJ, Gilbert PB,
Simon N, and Carone M (2024) <doi:10.1080/10618600.2024.2304070>.
Author: Charles Wolock [aut, cre, cph]
Maintainer: Charles Wolock <cwolock@gmail.com>
Diff between survML versions 1.0.0 dated 2023-07-08 and 1.1.0 dated 2024-03-17
DESCRIPTION | 11 MD5 | 57 - NAMESPACE | 14 NEWS.md | 6 R/compute_exponential.R | 70 - R/compute_prodint.R | 51 - R/f_w_algorithms.R | 31 R/f_w_stack.R | 2 R/f_y_algorithms.R | 29 R/f_y_stack.R | 2 R/stackG.R | 45 R/stackL.R | 4 R/stack_utils.R | 100 - R/survML-package.R | 14 README.md | 482 ++++----- build/partial.rdb |only build/vignette.rds |binary inst/doc/basic-usage.R | 205 ++-- inst/doc/basic-usage.Rmd | 5 inst/doc/basic-usage.html | 1105 +++++++++++----------- man/figures/README-plot_stackG_example-1.png |binary man/figures/README-plot_stackG_example_cens-1.png |binary man/figures/README-plot_stackL_example-1.png |binary man/stackG.Rd | 364 +++---- man/stackL.Rd | 292 ++--- man/survML-package.Rd | 46 tests/testthat.R | 24 tests/testthat/test-test-stackG.R | 371 +++++-- tests/testthat/test-test-stackL.R | 139 +- vignettes/basic-usage.Rmd | 5 30 files changed, 1808 insertions(+), 1666 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Structural multivariate-univariate linear mixed model solver for estimation of multiple random effects with unknown variance-covariance structures (e.g., heterogeneous and unstructured) and known covariance among levels of random effects (e.g., pedigree and genomic relationship matrices) (Covarrubias-Pazaran, 2016 <doi:10.1371/journal.pone.0156744>; Maier et al., 2015 <doi:10.1016/j.ajhg.2014.12.006>; Jensen et al., 1997). REML estimates can be obtained using the Direct-Inversion Newton-Raphson and Direct-Inversion Average Information algorithms for the problems r x r (r being the number of records) or using the Henderson-based average information algorithm for the problem c x c (c being the number of coefficients to estimate). Spatial models can also be fitted using the two-dimensional spline functionality available.
Author: Giovanny Covarrubias-Pazaran
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between sommer versions 4.3.3 dated 2023-11-13 and 4.3.4 dated 2024-03-17
DESCRIPTION | 8 MD5 | 50 +- NAMESPACE | 4 R/FUN_markers.R | 29 + R/FUN_special.R | 91 ++--- R/FUN_stats.R | 4 R/FUN_utils.R | 3 R/FUN_vsc.R | 6 R/mmec.R | 2 R/mmer.R | 2 R/predict_mmer.R | 541 ------------------------------ README.md | 2 man/DT_mohring.Rd | 34 + man/atc.Rd | 32 + man/atcg1234BackTransform.Rd |only man/csc.Rd | 20 - man/dsc.Rd | 31 + man/propMissing.Rd |only man/rrc.Rd | 6 man/usc.Rd | 33 + man/vsc.Rd | 4 vignettes/v1.sommer.quick.start.html | 4 vignettes/v2.sommer.changes.and.faqs.html | 4 vignettes/v3.sommer.qg.html | 4 vignettes/v4.sommer.gxe.html | 4 vignettes/v5.sommer.vs.lme4.html | 4 vignettes/v6.sommer.spatial.html | 4 27 files changed, 272 insertions(+), 654 deletions(-)
Title: Creates Bivariate Maps
Description: Contains functions to plot bivariate maps. For more info, see: Hidasi-Neto, J (2015) <https://rfunctions.blogspot.com/2015/03/bivariate-maps-bivariatemap-function.html>.
Author: Jose Hidasi-Neto [aut, cre]
Maintainer: Jose Hidasi-Neto <hidasineto@gmail.com>
Diff between bivariatemaps versions 1.2 dated 2023-11-21 and 1.3 dated 2024-03-17
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)