Title: Fit Zeta Distributions to Forensic Data
Description: Fits Zeta distributions (discrete power laws) to data that arises
from forensic surveys of clothing on the presence of glass and paint in
various populations. The general method is described to some extent in
Coulson, S.A., Buckleton, J.S., Gummer, A.B., and Triggs, C.M. (2001)
<doi:10.1016/S1355-0306(01)71847-3>, although the implementation differs.
Author: James Curran [aut, cre]
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between fitPS versions 1.0.0 dated 2024-01-10 and 1.0.1 dated 2024-03-19
DESCRIPTION | 10 MD5 | 26 +- NAMESPACE | 2 R/data.R | 140 +++++++------ R/summary.psFit.R |only build/partial.rdb |binary build/vignette.rds |binary data/Psurveys.rda |binary data/Ssurveys.rda |binary inst/REFERENCES.bib | 136 +++++++------ inst/doc/examples.pdf |binary inst/doc/simple_P_fit.pdf |binary inst/scripts/surveys.R | 469 +++++++++++++++++++++++++--------------------- man/Psurveys.Rd | 14 - man/summary.psFit.Rd |only 15 files changed, 439 insertions(+), 358 deletions(-)
Title: Interface to 'JDemetra+' Seasonal Adjustment Software
Description: Interface around 'JDemetra+' (<https://github.com/jdemetra/jdemetra-app>), the seasonal adjustment software officially
recommended to the members of the European Statistical System (ESS) and the European System of Central Banks.
It offers full access to all options and outputs of 'JDemetra+', including the two leading seasonal adjustment methods
TRAMO/SEATS+ and X-12ARIMA/X-13ARIMA-SEATS.
Author: Alain Quartier-la-Tente [aut, cre]
,
Anna Michalek [aut],
Jean Palate [aut],
Raf Baeyens [aut]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Diff between RJDemetra versions 0.2.5 dated 2024-02-03 and 0.2.6 dated 2024-03-19
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 13 +++++++++++++ R/get_jmodel.R | 4 ++-- R/utils.R | 12 ++++++++++-- README.md | 8 +++++--- inst/java/jdr-2.2.4.jar |binary 7 files changed, 41 insertions(+), 18 deletions(-)
Title: Generate Sample Censoring
Description: Provides functions to generate censored samples of type I, II and III, from any random sample generator. It also supplies the option to create left and right censorship. Along with this, the generation of samples with interval censoring is in the testing phase, with two options of fixed length intervals and random lengths.
Author: Daniel Saavedra [aut, cre, cph]
,
Pedro L Ramos [aut]
Maintainer: Daniel Saavedra <dlsaavedra@uc.cl>
Diff between rcens versions 0.1.0 dated 2024-03-07 and 0.1.1 dated 2024-03-19
DESCRIPTION | 14 +++++++++----- MD5 | 6 +++--- R/rcensT3.R | 2 +- README.md | 39 ++++++++++++++++++++++++++++++++------- 4 files changed, 45 insertions(+), 16 deletions(-)
Title: Robust and Flexible Model-Based Clustering for Data Sets with
Missing Values at Random
Description: Implementations of various robust and flexible model-based clustering methods for data sets with missing values at random.
Two main models are: Multivariate Contaminated Normal Mixture (MCNM, Tong and Tortora, 2022, <doi:10.1007/s11634-021-00476-1>) and
Multivariate Generalized Hyperbolic Mixture (MGHM, Wei et al., 2019, <doi:10.1016/j.csda.2018.08.016>). Mixtures via some special or limiting
cases of the multivariate generalized hyperbolic distribution are also included: Normal-Inverse Gaussian, Symmetric Normal-Inverse Gaussian,
Skew-Cauchy, Cauchy, Skew-t, Student's t, Normal, Symmetric Generalized Hyperbolic, Hyperbolic Univariate Marginals,
Hyperbolic, and Symmetric Hyperbolic.
Author: Hung Tong [aut, cre],
Cristina Tortora [aut, ths, dgs]
Maintainer: Hung Tong <hungtongmx@gmail.com>
Diff between MixtureMissing versions 3.0.1 dated 2024-01-17 and 3.0.2 dated 2024-03-19
MixtureMissing-3.0.1/MixtureMissing/R/dist_Cauchy.R |only MixtureMissing-3.0.1/MixtureMissing/R/dist_Hyp.R |only MixtureMissing-3.0.1/MixtureMissing/R/dist_Hyp_Uni_Marg.R |only MixtureMissing-3.0.1/MixtureMissing/R/dist_Norm_Inv_Gauss.R |only MixtureMissing-3.0.1/MixtureMissing/R/dist_Skew_Cauchy.R |only MixtureMissing-3.0.1/MixtureMissing/R/dist_Sym_Gen_Hyp.R |only MixtureMissing-3.0.1/MixtureMissing/R/dist_Sym_Hyp.R |only MixtureMissing-3.0.1/MixtureMissing/R/dist_Sym_Norm_Inv_Gauss.R |only MixtureMissing-3.0.2/MixtureMissing/DESCRIPTION | 10 MixtureMissing-3.0.2/MixtureMissing/MD5 | 43 MixtureMissing-3.0.2/MixtureMissing/NAMESPACE | 11 MixtureMissing-3.0.2/MixtureMissing/R/MCNM.R | 286 +- MixtureMissing-3.0.2/MixtureMissing/R/MGHM.R | 1043 ++++----- MixtureMissing-3.0.2/MixtureMissing/R/MixtureMissing.R | 1085 ++++++++-- MixtureMissing-3.0.2/MixtureMissing/R/dist_Norm.R | 76 MixtureMissing-3.0.2/MixtureMissing/R/dist_Skew_t.R | 226 +- MixtureMissing-3.0.2/MixtureMissing/R/dist_t.R | 238 +- MixtureMissing-3.0.2/MixtureMissing/R/extract.R |only MixtureMissing-3.0.2/MixtureMissing/R/select_mixture.R | 142 - MixtureMissing-3.0.2/MixtureMissing/R/utils.R | 64 MixtureMissing-3.0.2/MixtureMissing/man/MCNM.Rd | 34 MixtureMissing-3.0.2/MixtureMissing/man/MGHM.Rd | 34 MixtureMissing-3.0.2/MixtureMissing/man/extract.Rd |only MixtureMissing-3.0.2/MixtureMissing/man/initialize_clusters.Rd | 2 MixtureMissing-3.0.2/MixtureMissing/man/plot.MixtureMissing.Rd | 78 MixtureMissing-3.0.2/MixtureMissing/man/print.MixtureMissing.Rd |only MixtureMissing-3.0.2/MixtureMissing/man/select_mixture.Rd | 92 MixtureMissing-3.0.2/MixtureMissing/man/summary.MixtureMissing.Rd | 7 28 files changed, 2243 insertions(+), 1228 deletions(-)
More information about MixtureMissing at CRAN
Permanent link
Title: Extracting and Visualizing Output from 'jagsUI'
Description: Tools are provided to streamline Bayesian analyses in 'JAGS' using
the 'jagsUI' package. Included are functions for extracting output in
simpler format, functions for streamlining assessment of convergence, and
functions for producing summary plots of output. Also included is a
function that provides a simple template for running 'JAGS' from 'R'.
Referenced materials can be found at <DOI:10.1214/ss/1177011136>.
Author: Matt Tyers [aut, cre]
Maintainer: Matt Tyers <matttyersstat@gmail.com>
Diff between jagshelper versions 0.2.1 dated 2024-01-17 and 0.2.2 dated 2024-03-19
DESCRIPTION | 12 ++-- MD5 | 24 ++++---- NEWS.md | 5 + R/jagshelper1.R | 110 ++++++++++++++++++++++++++++++++++---- build/vignette.rds |binary inst/doc/jagshelper-vignette.html | 2 man/caterpillar.Rd | 11 +++ man/comparecat.Rd | 27 ++++++++- man/envelope.Rd | 10 +++ man/jagshelper-package.Rd | 4 - man/overlayenvelope.Rd | 12 ++++ man/ts_postpred.Rd | 19 ++++++ tests/testthat/test_jagshelper.R | 22 +++++++ 13 files changed, 225 insertions(+), 33 deletions(-)
Title: Bayesian Ordination and Regression AnaLysis
Description: Bayesian approaches for analyzing multivariate data in ecology. Estimation is performed using Markov Chain Monte Carlo (MCMC) methods via Three. JAGS types of models may be fitted: 1) With explanatory variables only, boral fits independent column Generalized Linear Models (GLMs) to each column of the response matrix; 2) With latent variables only, boral fits a purely latent variable model for model-based unconstrained ordination; 3) With explanatory and latent variables, boral fits correlated column GLMs with latent variables to account for any residual correlation between the columns of the response matrix.
Author: Francis K.C. Hui [aut, cre],
Wade Blanchard [aut]
Maintainer: Francis K.C. Hui <fhui28@gmail.com>
Diff between boral versions 2.0 dated 2021-03-12 and 2.0.1 dated 2024-03-19
boral-2.0.1/boral/DESCRIPTION | 8 +-- boral-2.0.1/boral/MD5 | 47 +++++++++++------------ boral-2.0.1/boral/R/auxilaryfunctions.R | 2 boral-2.0.1/boral/R/boral.jags.R | 9 ---- boral-2.0.1/boral/R/simdatafunctions.R | 2 boral-2.0.1/boral/R/varpart.R | 6 +- boral-2.0.1/boral/build/boral.pdf |binary boral-2.0.1/boral/build/partial.rdb |binary boral-2.0.1/boral/inst/CITATION | 18 +++----- boral-2.0.1/boral/man/about.lvs.Rd | 2 boral-2.0.1/boral/man/about.ranefs.Rd | 2 boral-2.0.1/boral/man/about.ssvs.Rd | 2 boral-2.0.1/boral/man/boral.Rd | 8 +-- boral-2.0.1/boral/man/calc.condlogLik.Rd | 2 boral-2.0.1/boral/man/calc.logLik.lv0.Rd | 2 boral-2.0.1/boral/man/calc.marglogLik.Rd | 2 boral-2.0.1/boral/man/calc.varpart.Rd | 2 boral-2.0.1/boral/man/create.life.Rd | 4 - boral-2.0.1/boral/man/get.hpdintervals.Rd | 4 - boral-2.0.1/boral/man/get.measures.Rd | 2 boral-2.0.1/boral/man/get.more.measures.Rd | 2 boral-2.0.1/boral/man/make.jagsboralmodel.Rd | 4 - boral-2.0.1/boral/man/make.jagsboralnullmodel.Rd | 4 - boral-2.0.1/boral/man/ranefsplot.Rd | 4 - boral-2.0/boral/inst/NEWS.Rd |only 25 files changed, 64 insertions(+), 74 deletions(-)
Title: Quality Assessment for Seasonal Adjustment
Description: Add-in to the 'RJDemetra' package on seasonal adjustments.
It allows to produce dashboards to summarise models and quickly check the quality of the seasonal adjustment.
Author: Alain Quartier-la-Tente [aut, cre]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Diff between rjdqa versions 0.1.3 dated 2024-02-04 and 0.1.4 dated 2024-03-19
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/simple_dashboard.R | 2 +- R/simple_dashboard2.R | 30 ++++++++++++++++++++++-------- README.md | 3 ++- man/simple_dashboard.Rd | 5 ++++- 7 files changed, 46 insertions(+), 22 deletions(-)
Title: Creates Statistical Reports
Description: Contains functions to create regulatory-style statistical reports.
Originally designed to create tables, listings, and figures for the
pharmaceutical, biotechnology, and medical device industries, these
reports are generalized enough that they could be used in any industry.
Generates text, rich-text, PDF, HTML, and Microsoft Word file formats.
The package specializes
in printing wide and long tables with automatic page wrapping and splitting.
Reports can be produced with a minimum of function calls, and without
relying on other table packages. The package supports titles, footnotes,
page header, page footers, spanning headers, page by variables,
and automatic page numbering.
Author: David Bosak [aut, cre],
Kevin Kramer [ctb],
Duong Tran [ctb],
Raphael Huang [ctb],
Archytas Clinical Solutions [cph]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between reporter versions 1.4.3 dated 2023-10-29 and 1.4.4 dated 2024-03-19
reporter-1.4.3/reporter/tests/testthat/html/images/test11-DUG5.jpg |only reporter-1.4.3/reporter/tests/testthat/html/images/test14-B279.jpg |only reporter-1.4.3/reporter/tests/testthat/html/images/test14-UGDC.jpg |only reporter-1.4.3/reporter/tests/testthat/html/images/test14-XS6Y.jpg |only reporter-1.4.3/reporter/tests/testthat/html/images/test20-QFL6.jpg |only reporter-1.4.3/reporter/tests/testthat/pdf/test30.pdf |only reporter-1.4.3/reporter/tests/testthat/pdf/test31.pdf |only reporter-1.4.3/reporter/tests/testthat/pdf/test32.pdf |only reporter-1.4.3/reporter/tests/testthat/pdf/test35.pdf |only reporter-1.4.3/reporter/tests/testthat/pdf/test36.pdf |only reporter-1.4.3/reporter/tests/testthat/pdf/test37.pdf |only reporter-1.4.3/reporter/tests/testthat/pdf/test38.pdf |only reporter-1.4.4/reporter/DESCRIPTION | 10 reporter-1.4.4/reporter/MD5 | 63 +-- reporter-1.4.4/reporter/NEWS.md | 9 reporter-1.4.4/reporter/R/create_table_rtf.R | 15 reporter-1.4.4/reporter/R/page_template_rtf.R | 4 reporter-1.4.4/reporter/R/plot_spec.R | 23 + reporter-1.4.4/reporter/R/reporter.R | 3 reporter-1.4.4/reporter/R/sizing_functions.R | 8 reporter-1.4.4/reporter/R/utilities.R | 7 reporter-1.4.4/reporter/R/write_report_docx.R | 3 reporter-1.4.4/reporter/R/write_report_html.R | 3 reporter-1.4.4/reporter/R/write_report_rtf2.R | 3 reporter-1.4.4/reporter/R/write_report_text.R | 5 reporter-1.4.4/reporter/build/vignette.rds |binary reporter-1.4.4/reporter/inst/doc/reporter-wrap.html | 4 reporter-1.4.4/reporter/man/images/e6a.png |binary reporter-1.4.4/reporter/man/images/e6b.png |binary reporter-1.4.4/reporter/man/reporter.Rd | 21 + reporter-1.4.4/reporter/tests/testthat/borkrpt.rds |only reporter-1.4.4/reporter/tests/testthat/test-docx.R | 44 ++ reporter-1.4.4/reporter/tests/testthat/test-html.R | 50 ++ reporter-1.4.4/reporter/tests/testthat/test-pdf.R | 8 reporter-1.4.4/reporter/tests/testthat/test-pdf2.R | 114 ++++++ reporter-1.4.4/reporter/tests/testthat/test-rtf.R | 7 reporter-1.4.4/reporter/tests/testthat/test-rtf2.R | 151 ++++++++- reporter-1.4.4/reporter/tests/testthat/test-system.R | 10 reporter-1.4.4/reporter/tests/testthat/test-user.R | 167 ++++++++++ 39 files changed, 660 insertions(+), 72 deletions(-)
Title: Multivariate Generalised Gaussian Distribution; Kullback-Leibler
Divergence
Description: Distance between multivariate generalised Gaussian distributions, as presented by N. Bouhlel and A. Dziri (2019) <doi:10.1109/LSP.2019.2915000>. Manipulation of multivariate generalised Gaussian distributions (methods presented by Gomez, Gomez-Villegas and Marin (1998) <doi:10.1080/03610929808832115> and Pascal, Bombrun, Tourneret and Berthoumieu (2013) <doi:10.1109/TSP.2013.2282909>).
Author: Pierre Santagostini [aut, cre],
Nizar Bouhlel [aut]
Maintainer: Pierre Santagostini <pierre.santagostini@agrocampus-ouest.fr>
Diff between mggd versions 1.1.0 dated 2023-03-22 and 1.2.3 dated 2024-03-19
mggd-1.1.0/mggd/R/contourmvggd.R |only mggd-1.1.0/mggd/R/estparmvggd.R |only mggd-1.1.0/mggd/R/mggd.R |only mggd-1.1.0/mggd/R/mvdggd.R |only mggd-1.1.0/mggd/R/mvrggd.R |only mggd-1.1.0/mggd/R/plotmvggd.R |only mggd-1.1.0/mggd/man/contourmvggd.Rd |only mggd-1.1.0/mggd/man/estparmvggd.Rd |only mggd-1.1.0/mggd/man/mvdggd.Rd |only mggd-1.1.0/mggd/man/mvrggd.Rd |only mggd-1.1.0/mggd/man/plotmvggd.Rd |only mggd-1.1.0/mggd/tests/testthat/test_mvrggd.R |only mggd-1.2.3/mggd/DESCRIPTION | 10 mggd-1.2.3/mggd/MD5 | 50 +-- mggd-1.2.3/mggd/NAMESPACE | 7 mggd-1.2.3/mggd/R/contourmggd.R |only mggd-1.2.3/mggd/R/deprecated.R | 74 +++++ mggd-1.2.3/mggd/R/dmggd.R |only mggd-1.2.3/mggd/R/estparmggd.R |only mggd-1.2.3/mggd/R/kldggd.R | 2 mggd-1.2.3/mggd/R/lauricella.R | 320 ++++++++++++++-------- mggd-1.2.3/mggd/R/lnpochhammer.R |only mggd-1.2.3/mggd/R/mggd-package.R |only mggd-1.2.3/mggd/R/plotmggd.R |only mggd-1.2.3/mggd/R/rmggd.R |only mggd-1.2.3/mggd/build/partial.rdb |binary mggd-1.2.3/mggd/man/contourmggd.Rd |only mggd-1.2.3/mggd/man/deprecated.Rd | 56 +++ mggd-1.2.3/mggd/man/dmggd.Rd |only mggd-1.2.3/mggd/man/estparmggd.Rd |only mggd-1.2.3/mggd/man/kldggd.Rd | 2 mggd-1.2.3/mggd/man/lauricella.Rd | 2 mggd-1.2.3/mggd/man/lnpochhammer.Rd |only mggd-1.2.3/mggd/man/mggd-package.Rd | 19 - mggd-1.2.3/mggd/man/plotmggd.Rd |only mggd-1.2.3/mggd/man/rmggd.Rd |only mggd-1.2.3/mggd/tests/testthat/test_estparmvggd.R | 10 mggd-1.2.3/mggd/tests/testthat/test_kldggd.R | 24 + mggd-1.2.3/mggd/tests/testthat/test_rmggd.R |only 39 files changed, 430 insertions(+), 146 deletions(-)
Title: Evolutionary Diversity Metrics for Raster Data
Description: Phylogenetic Diversity (PD, Faith 1992), Evolutionary Distinctiveness (ED, Isaac et al. 2007), Phylogenetic Endemism (PE, Rosauer et al. 2009; Laffan et al. 2016), and Weighted Endemism (WE, Laffan et al. 2016) for presence-absence raster.
Faith, D. P. (1992) <doi:10.1016/0006-3207(92)91201-3>
Isaac, N. J. et al. (2007) <doi:10.1371/journal.pone.0000296>
Laffan, S. W. et al. (2016) <doi:10.1111/2041-210X.12513>
Rosauer, D. et al. (2009) <doi:10.1111/j.1365-294X.2009.04311.x>.
Author: Gabriela Alves-Ferreira [aut, cre, cph]
,
Flavio M. M. Mota [aut] ,
Neander Marcel Heming [aut]
Maintainer: Gabriela Alves-Ferreira <gabriela-alves77@hotmail.com>
Diff between phyloraster versions 2.0.1 dated 2023-11-28 and 2.1.0 dated 2024-03-19
DESCRIPTION | 17 MD5 | 152 +- NAMESPACE | 46 NEWS.md | 9 R/arg.check.R | 88 - R/branch.length.R |only R/dataR.R | 22 R/delta.grid.R | 118 +- R/df2rast.R | 72 - R/geo.phylo.R | 905 +++++++-------- R/inv.range.R | 100 - R/load.data.rosauer.R | 50 R/phylo.pres.R | 414 +++---- R/range_size.R | 94 - R/rast.ed.ses.R | 618 +++++----- R/rast.pd.ses.R | 590 +++++----- R/rast.pe.ses.R | 598 +++++----- R/rast.we.ses.R | 532 ++++----- R/shp2rast.R | 168 +- R/spp.ed.R |only README.md | 110 - build/vignette.rds |binary data/external_data_epm_tests.R | 48 inst/CITATION | 47 inst/doc/phyloraster-vignette.R | 361 +++--- inst/doc/phyloraster-vignette.Rmd | 47 inst/doc/phyloraster-vignette.html | 1830 ++++++++++++++++---------------- inst/extdata/rast.presab.tif.aux.xml | 712 ++++++------ man/arg.check.Rd | 84 - man/dataR.Rd | 42 man/delta.grid.Rd | 104 - man/df2rast.Rd | 68 - man/dot-fit.memory.Rd | 40 man/dot-rast.ed.B.Rd | 88 - man/dot-rast.geo.phylo.Rd | 176 +-- man/dot-rast.pd.B.Rd | 76 - man/dot-rast.pe.B.Rd | 70 - man/dot-rast.we.B.Rd | 78 - man/figures/logo.png |binary man/geo.phylo.Rd | 220 +-- man/geo.phylo.ses.Rd | 252 ++-- man/inv.range.Rd | 78 - man/load.data.rosauer.Rd | 50 man/phylo.pres.Rd | 120 +- man/range_size.Rd | 80 - man/rast.ed.Rd | 121 +- man/rast.ed.ses.Rd | 230 ++-- man/rast.pd.Rd | 106 - man/rast.pd.ses.Rd | 226 +-- man/rast.pe.Rd | 146 +- man/rast.pe.ses.Rd | 218 +-- man/rast.sr.Rd | 68 - man/rast.we.Rd | 114 - man/rast.we.ses.Rd | 180 +-- man/shp2rast.Rd | 150 +- man/species.ed.Rd |only man/species.tip.length.Rd |only man/tip.root.path.Rd | 92 - tests/testthat.R | 8 tests/testthat/test-branch.length.R |only tests/testthat/test-delta-grid.R | 122 +- tests/testthat/test-df2rast.R | 20 tests/testthat/test-geo.phylo.R | 388 +++--- tests/testthat/test-inv-range.R | 28 tests/testthat/test-phylo-pres.R | 318 ++--- tests/testthat/test-range-size.R | 28 tests/testthat/test-rast-ed-ses.R | 334 ++--- tests/testthat/test-rast-ed.R | 114 - tests/testthat/test-rast-pd.R | 204 +-- tests/testthat/test-rast-pe-rast-we.R | 46 tests/testthat/test-rast-sr.R | 88 - tests/testthat/test-rast-we.R | 92 - tests/testthat/test-rast.pd.ses.R | 328 ++--- tests/testthat/test-rast.pe.R | 216 +-- tests/testthat/test-rast.pe.ses.R | 316 ++--- tests/testthat/test-rast.we.ses.R | 192 +-- tests/testthat/test-shp2rast.R | 162 +- tests/testthat/test-species-ed.R |only tests/testthat/test-test-geophylo-ses.R | 310 ++--- vignettes/phyloraster-vignette.Rmd | 47 80 files changed, 7280 insertions(+), 7106 deletions(-)
Title: R Interface to the US Census Bureau International Data Base API
Description: Use R to make requests to the US Census Bureau's International Data Base API.
Results are returned as R data frames. For more information about the IDB API, visit
<https://www.census.gov/data/developers/data-sets/international-database.html>.
Author: Kyle Walker [aut, cre]
Maintainer: Kyle Walker <kyle.walker@tcu.edu>
Diff between idbr versions 1.0 dated 2021-04-11 and 1.2 dated 2024-03-19
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 1 + R/IDBr_package.R | 1 + R/get_idb.R | 18 +++++++++++------- R/zzz.R | 2 +- 6 files changed, 25 insertions(+), 19 deletions(-)
Title: Static and Dynamic 3D and Editable Interactive Plots for the
'vegan' Package
Description: Static and dynamic 3D plots to be used with ordination
results and in diversity analysis, especially with the vegan package.
Author: Jari Oksanen [aut, cre],
Roeland Kindt [aut],
Gavin L. Simpson [aut],
Duncan Murdoch [ctb]
Maintainer: Jari Oksanen <jhoksane@gmail.com>
Diff between vegan3d versions 1.2-0 dated 2023-02-03 and 1.3-0 dated 2024-03-19
DESCRIPTION | 10 ++++++---- MD5 | 18 ++++++++++++------ NAMESPACE | 10 ++++++++-- R/orditkplot.R |only R/plot.orditkplot.R |only R/points.orditkplot.R |only R/scores.orditkplot.R |only R/text.orditkplot.R |only build/partial.rdb |binary inst/NEWS.md | 15 +++++++++++++++ inst/README.md | 7 +++++++ man/orditkplot.Rd |only man/vegan3d-package.Rd | 21 +++++++++++++++++++-- 13 files changed, 67 insertions(+), 14 deletions(-)
Title: Tools to Accompany the 'psych' Package for Psychological
Research
Description: Support functions, data sets, and vignettes for the 'psych' package. Contains several of the biggest data sets for the 'psych' package as well as four vignettes. A few helper functions for file manipulation are included as well. For more information, see the <https://personality-project.org/r/> web page.
Author: William Revelle [aut, cre]
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psychTools versions 2.4.2 dated 2024-01-17 and 2.4.3 dated 2024-03-19
DESCRIPTION | 10 - MD5 | 20 +-- NAMESPACE | 7 - R/df2latex.R | 282 ++++++++++++++++++++++++++++++++++++++++++++++++- inst/CITATION | 2 inst/NEWS.Rd | 6 - inst/doc/intro.pdf |binary inst/doc/mediation.pdf |binary inst/doc/omega.pdf |binary inst/doc/overview.pdf |binary man/df2latex.Rd | 68 ++++++++++- 11 files changed, 366 insertions(+), 29 deletions(-)
Title: MAny-Group MAtching
Description: Balancing quasi-experimental field research for effects of covariates is fundamental for drawing causal inference. Propensity Score Matching deals with this issue but current
techniques are restricted to binary treatment variables. Moreover, they provide several solutions without providing a comprehensive framework on choosing the best model. The
'MAGMA.R' -package addresses these restrictions by offering nearest neighbor matching for two to four groups. It also includes the option to match data of a 2x2 design. In addition,
'MAGMA.R' includes a framework for evaluating the post-matching balance. The package includes functions for the matching process and matching reporting. We provide a tutorial on
'MAGMA.R' as vignette. More information on 'MAGMA.R' can be found in Feuchter, M. D., Urban, J., Scherrer V., Breit, M. L., and Preckel F. (2022) <https://osf.io/p47nc/>.
Author: Julian Urban [aut, cre],
Markus D. Feuchter [aut],
Vsevolod Scherrer [aut],
Moritz L. Breit [aut],
Franzis Preckel [aut]
Maintainer: Julian Urban <urbanj@uni-trier.de>
Diff between MAGMA.R versions 1.0 dated 2024-02-09 and 1.0.1 dated 2024-03-19
DESCRIPTION | 10 +-- MD5 | 27 +++++----- NAMESPACE | 6 ++ R/Desc_function.R | 81 ++++++++++++++++++++++++++++---- R/MAGMA_exact_function.R | 2 R/Non_parametric_descs.R |only R/Pillai_functions.R | 4 - R/Visualizing_MAGMA_functions.R | 4 - R/d_ratio_functions.R | 2 inst/doc/Vignette.R | 2 inst/doc/Vignette.Rmd | 2 inst/doc/Vignette.html | 101 ++++++++++++++++++++++------------------ man/MAGMA_desc.Rd | 18 ++++++- man/MAGMA_exact.Rd | 2 vignettes/Vignette.Rmd | 2 15 files changed, 184 insertions(+), 79 deletions(-)
Title: General-to-Specific Modelling of Panel Data
Description: Uses several types of indicator saturation and automated General-to-Specific (GETS) modelling from the 'gets' package and applies it to panel data. This allows the detection of structural breaks in panel data, operationalising a reverse causal approach of causal inference, see Pretis and Schwarz (2022) <doi:10.2139/ssrn.4022745>.
Author: Felix Pretis [aut],
Moritz Schwarz [aut, cre]
Maintainer: Moritz Schwarz <moritz.schwarz@scmo.eu>
Diff between getspanel versions 0.1.5 dated 2023-10-19 and 0.2.0 dated 2024-03-19
getspanel-0.1.5/getspanel/tests/testthat/_snaps/3-snapshot_isatpanel.md |only getspanel-0.1.5/getspanel/tests/testthat/_snaps/4-plotting |only getspanel-0.1.5/getspanel/tests/testthat/_test-4-plotting.R |only getspanel-0.1.5/getspanel/tests/testthat/test-5-various-inputs.R |only getspanel-0.1.5/getspanel/tests/testthat/test-6-AR.R |only getspanel-0.2.0/getspanel/DESCRIPTION | 8 getspanel-0.2.0/getspanel/MD5 | 63 +- getspanel-0.2.0/getspanel/NAMESPACE | 1 getspanel-0.2.0/getspanel/NEWS.md | 16 getspanel-0.2.0/getspanel/R/check.time.subset.vectors.R |only getspanel-0.2.0/getspanel/R/identify_indicator_timings.R | 14 getspanel-0.2.0/getspanel/R/isatpanel.R | 229 ++++++- getspanel-0.2.0/getspanel/R/plot.isatpanel.R | 12 getspanel-0.2.0/getspanel/R/plot_grid.R | 25 getspanel-0.2.0/getspanel/R/plot_residuals.R | 2 getspanel-0.2.0/getspanel/inst/doc/introduction.html | 16 getspanel-0.2.0/getspanel/man/check.time.subset.vectors.Rd |only getspanel-0.2.0/getspanel/man/isatpanel.Rd | 43 + getspanel-0.2.0/getspanel/tests/testthat/_snaps/9-plotting |only getspanel-0.2.0/getspanel/tests/testthat/test-1-isatpanel-short.R | 72 +- getspanel-0.2.0/getspanel/tests/testthat/test-10-exclusions-and-subsets.R |only getspanel-0.2.0/getspanel/tests/testthat/test-3-various-inputs.R |only getspanel-0.2.0/getspanel/tests/testthat/test-4-AR.R |only getspanel-0.2.0/getspanel/tests/testthat/test-5-tis.R |only getspanel-0.2.0/getspanel/tests/testthat/test-7-koch-et-al.R | 296 +++++----- getspanel-0.2.0/getspanel/tests/testthat/test-9-plotting.R |only 26 files changed, 505 insertions(+), 292 deletions(-)
More information about survivalmodels at CRAN
Permanent link
Title: Quantile Classifier
Description: Code for centroid, median and quantile classifiers.
Author: Marco Berrettini, Christian Hennig, Cinzia Viroli
Maintainer: Cinzia Viroli <cinzia.viroli@unibo.it>
Diff between quantileDA versions 1.1 dated 2016-02-02 and 1.2 dated 2024-03-19
quantileDA-1.1/quantileDA/R/plot.quantiled.R |only quantileDA-1.1/quantileDA/R/quantilecldiff.R |only quantileDA-1.1/quantileDA/man/plot.quantiled.Rd |only quantileDA-1.1/quantileDA/man/quantilecldiff.Rd |only quantileDA-1.2/quantileDA/DESCRIPTION | 10 - quantileDA-1.2/quantileDA/MD5 | 22 ++-- quantileDA-1.2/quantileDA/NAMESPACE | 11 -- quantileDA-1.2/quantileDA/R/fn_vw.R |only quantileDA-1.2/quantileDA/R/init_theta.R |only quantileDA-1.2/quantileDA/R/print.quantileDA.R | 4 quantileDA-1.2/quantileDA/R/quantileCV.R | 25 +++- quantileDA-1.2/quantileDA/R/quantilecl.R | 1 quantileDA-1.2/quantileDA/R/quantilecl.vw.R |only quantileDA-1.2/quantileDA/man/fn_vw.Rd |only quantileDA-1.2/quantileDA/man/init.theta.Rd |only quantileDA-1.2/quantileDA/man/quantilecl.Rd | 128 ++++++++++++------------ quantileDA-1.2/quantileDA/man/quantilecl.vw.Rd |only 17 files changed, 105 insertions(+), 96 deletions(-)
Title: The Gaussian Covariate Method for Variable Selection
Description: The standard linear regression theory whether frequentist or Bayesian is based on an 'assumed (revealed?) truth' (John Tukey) attitude to models. This is reflected in the language of statistical inference which involves a concept of truth, for example confidence intervals, hypothesis testing and consistency. The motivation behind this package was to remove the word true from the theory and practice of linear regression and to replace it by approximation. The approximations considered are the least squares approximations. An approximation is called valid if it contains no irrelevant covariates. This is operationalized using the concept of a Gaussian P-value which is the probability that pure Gaussian noise is better in term of least squares than the covariate. The precise definition given in the paper, it is intuitive and requires only four simple equations. Its overwhelming advantage compared with a standard F P-value is that is is exact and valid whatever the data. In contrast F P [...truncated...]
Author: Laurie Davies [aut, cre]
Maintainer: Laurie Davies <pldavies44@cantab.net>
Diff between gausscov versions 1.1.1 dated 2024-03-04 and 1.1.2 dated 2024-03-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/f1st.R | 20 ++++++++++---------- man/f1st.Rd | 2 +- src/gaucov.f | 8 +++++--- 5 files changed, 24 insertions(+), 22 deletions(-)
Title: A Tool for Processing and Analyzing Dendrometer Data
Description: There are various functions for managing and cleaning data before the application of different approaches. This includes identifying and erasing sudden jumps in dendrometer data not related to environmental change, identifying the time gaps of recordings, and changing the temporal resolution of data to different frequencies. Furthermore, the package calculates daily statistics of dendrometer data, including the daily amplitude of tree growth. Various approaches can be applied to separate radial growth from daily cyclic shrinkage and expansion due to uptake and loss of stem water. In addition, it identifies periods of consecutive days with user-defined climatic conditions in daily meteorological data, then check what trees are doing during that period.
Author: Sugam Aryal [aut, cre, dtc],
Martin Haeusser [aut],
Jussi Griessinger [aut],
Ze-Xin Fan [aut],
Achim Braeuning [aut, dgs]
Maintainer: Sugam Aryal <sugam.aryal@fau.de>
Diff between dendRoAnalyst versions 0.1.4 dated 2022-11-15 and 0.1.5 dated 2024-03-19
dendRoAnalyst-0.1.4/dendRoAnalyst/R/jump.locator.R |only dendRoAnalyst-0.1.4/dendRoAnalyst/R/spline.interpolation.R |only dendRoAnalyst-0.1.4/dendRoAnalyst/man/spline.interpolation.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/DESCRIPTION | 18 dendRoAnalyst-0.1.5/dendRoAnalyst/MD5 | 87 +- dendRoAnalyst-0.1.5/dendRoAnalyst/NAMESPACE | 135 ++- dendRoAnalyst-0.1.5/dendRoAnalyst/R/clim.twd.R | 255 ++---- dendRoAnalyst-0.1.5/dendRoAnalyst/R/daily.data.R | 104 +- dendRoAnalyst-0.1.5/dendRoAnalyst/R/dendro.resample.R | 337 +------- dendRoAnalyst-0.1.5/dendRoAnalyst/R/dendro.truncate.R | 114 +- dendRoAnalyst-0.1.5/dendRoAnalyst/R/dm.detrend.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/R/dm.fit.gompertz.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/R/dm.na.interpolation.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/R/i.jump.locator.R | 135 +-- dendRoAnalyst-0.1.5/dendRoAnalyst/R/jump_locator.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/R/ktm_rain17.R | 18 dendRoAnalyst-0.1.5/dendRoAnalyst/R/mean.detrended.dm.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/R/mov.cor.dm.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/R/network.interpolation.R | 153 +-- dendRoAnalyst-0.1.5/dendRoAnalyst/R/phase.sc.R | 234 ++---- dendRoAnalyst-0.1.5/dendRoAnalyst/R/phase.zg.R | 389 ++-------- dendRoAnalyst-0.1.5/dendRoAnalyst/R/plot_SC_output.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/R/plot_ZG_output.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/R/plot_mov.cor.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/R/read.dendrometer.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/R/twd.maxima.R | 114 +- dendRoAnalyst-0.1.5/dendRoAnalyst/R/zzz.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/build/partial.rdb |binary dendRoAnalyst-0.1.5/dendRoAnalyst/build/vignette.rds |binary dendRoAnalyst-0.1.5/dendRoAnalyst/data/ktm_rain17.rda |binary dendRoAnalyst-0.1.5/dendRoAnalyst/inst/doc/NEWS.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/inst/doc/NEWS.Rmd |only dendRoAnalyst-0.1.5/dendRoAnalyst/inst/doc/NEWS.html |only dendRoAnalyst-0.1.5/dendRoAnalyst/inst/doc/dendRoAnalyst_vignettes.R | 6 dendRoAnalyst-0.1.5/dendRoAnalyst/inst/doc/dendRoAnalyst_vignettes.Rmd | 162 ++-- dendRoAnalyst-0.1.5/dendRoAnalyst/inst/doc/dendRoAnalyst_vignettes.html | 29 dendRoAnalyst-0.1.5/dendRoAnalyst/man/clim.twd.Rd | 19 dendRoAnalyst-0.1.5/dendRoAnalyst/man/daily.data.Rd | 11 dendRoAnalyst-0.1.5/dendRoAnalyst/man/dendro.resample.Rd | 6 dendRoAnalyst-0.1.5/dendRoAnalyst/man/dendro.truncate.Rd | 4 dendRoAnalyst-0.1.5/dendRoAnalyst/man/dm.detrend.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/dm.fit.gompertz.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/dm.na.interpolation.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/i.jump.locator.Rd | 7 dendRoAnalyst-0.1.5/dendRoAnalyst/man/jump.locator.Rd | 6 dendRoAnalyst-0.1.5/dendRoAnalyst/man/ktm_rain17.Rd | 2 dendRoAnalyst-0.1.5/dendRoAnalyst/man/mean_detrended.dm.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/mov.cor.dm.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/network.interpolation.Rd | 5 dendRoAnalyst-0.1.5/dendRoAnalyst/man/phase.sc.Rd | 42 - dendRoAnalyst-0.1.5/dendRoAnalyst/man/phase.zg.Rd | 61 - dendRoAnalyst-0.1.5/dendRoAnalyst/man/plot_SC_output.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/plot_ZG_output.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/plot_mov.cor.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/read.dendrometer.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/twd.maxima.Rd | 18 dendRoAnalyst-0.1.5/dendRoAnalyst/vignettes/NEWS.Rmd |only dendRoAnalyst-0.1.5/dendRoAnalyst/vignettes/dendRoAnalyst_vignettes.Rmd | 162 ++-- 58 files changed, 1004 insertions(+), 1629 deletions(-)
Title: A 'dplyr' Back End for Databases
Description: A 'dplyr' back end for databases that allows you to work with
remote database tables as if they are in-memory data frames. Basic
features works with any database that has a 'DBI' back end; more
advanced features require 'SQL' translation to be provided by the
package author.
Author: Hadley Wickham [aut, cre],
Maximilian Girlich [aut],
Edgar Ruiz [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between dbplyr versions 2.4.0 dated 2023-10-26 and 2.5.0 dated 2024-03-19
dbplyr-2.4.0/dbplyr/R/table-ident.R |only dbplyr-2.4.0/dbplyr/tests/testthat/_snaps/table-ident.md |only dbplyr-2.4.0/dbplyr/tests/testthat/test-table-ident.R |only dbplyr-2.5.0/dbplyr/DESCRIPTION | 30 dbplyr-2.5.0/dbplyr/LICENSE | 4 dbplyr-2.5.0/dbplyr/MD5 | 316 +++++----- dbplyr-2.5.0/dbplyr/NAMESPACE | 47 + dbplyr-2.5.0/dbplyr/NEWS.md | 123 +++ dbplyr-2.5.0/dbplyr/R/backend-.R | 19 dbplyr-2.5.0/dbplyr/R/backend-hana.R | 6 dbplyr-2.5.0/dbplyr/R/backend-mssql.R | 104 ++- dbplyr-2.5.0/dbplyr/R/backend-mysql.R | 43 + dbplyr-2.5.0/dbplyr/R/backend-oracle.R | 83 ++ dbplyr-2.5.0/dbplyr/R/backend-postgres-old.R | 3 dbplyr-2.5.0/dbplyr/R/backend-postgres.R | 39 + dbplyr-2.5.0/dbplyr/R/backend-redshift.R | 39 + dbplyr-2.5.0/dbplyr/R/backend-snowflake.R | 100 ++- dbplyr-2.5.0/dbplyr/R/backend-spark-sql.R | 50 + dbplyr-2.5.0/dbplyr/R/backend-teradata.R | 2 dbplyr-2.5.0/dbplyr/R/build-sql.R | 4 dbplyr-2.5.0/dbplyr/R/data-lahman.R | 3 dbplyr-2.5.0/dbplyr/R/db-escape.R | 2 dbplyr-2.5.0/dbplyr/R/db-io.R | 109 +-- dbplyr-2.5.0/dbplyr/R/db-sql.R | 172 ++--- dbplyr-2.5.0/dbplyr/R/db.R | 6 dbplyr-2.5.0/dbplyr/R/dbplyr.R | 1 dbplyr-2.5.0/dbplyr/R/escape.R | 5 dbplyr-2.5.0/dbplyr/R/ident.R | 18 dbplyr-2.5.0/dbplyr/R/import-standalone-s3-register.R |only dbplyr-2.5.0/dbplyr/R/lazy-join-query.R | 26 dbplyr-2.5.0/dbplyr/R/lazy-ops.R | 11 dbplyr-2.5.0/dbplyr/R/lazy-select-query.R | 3 dbplyr-2.5.0/dbplyr/R/query-join.R | 44 - 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Title: Comparison of Bioregionalisation Methods
Description: The main purpose of this package is to propose a transparent methodological framework to compare bioregionalisation methods based on hierarchical and non-hierarchical clustering algorithms (Kreft & Jetz (2010) <doi:10.1111/j.1365-2699.2010.02375.x>) and network algorithms (Lenormand et al. (2019) <doi:10.1002/ece3.4718> and Leroy et al. (2019) <doi:10.1111/jbi.13674>).
Author: Maxime Lenormand [aut, cre] ,
Boris Leroy [aut] ,
Pierre Denelle [aut]
Maintainer: Maxime Lenormand <maxime.lenormand@inrae.fr>
Diff between bioregion versions 1.0.0 dated 2023-04-14 and 1.1.0 dated 2024-03-19
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Title: Network-Based Genome Wide Association Studies
Description: A multi-core R package that contains a set of tools based on copula graphical
models for accomplishing the three interrelated goals in genetics and genomics in an
unified way: (1) linkage map construction, (2) constructing linkage disequilibrium
networks, and (3) exploring high-dimensional genotype-phenotype network and genotype-
phenotype-environment interactions networks.
The 'netgwas' package can deal with biparental inbreeding and outbreeding species with
any ploidy level, namely diploid (2 sets of chromosomes), triploid (3 sets of chromosomes),
tetraploid (4 sets of chromosomes) and so on. We target on high-dimensional data where
number of variables p is considerably larger than number of sample sizes (p >> n).
The computations is memory-optimized using the sparse matrix output. The 'netgwas'
implements the methodological developments in Behrouzi and Wit (2017)
<doi:10.1111/rssc.12287> and Behrouzi and Wit (2017) <doi:10.1093/bioinformatics/bty777>.
Author: Pariya Behrouzi [aut, cre] ,
Ernst C. Wit [ctb]
Maintainer: Pariya Behrouzi <pariya.behrouzi@gmail.com>
Diff between netgwas versions 1.14.2 dated 2023-08-07 and 1.14.3 dated 2024-03-19
DESCRIPTION | 6 ++-- MD5 | 12 ++++---- R/selectnet.R | 2 - man/CviCol.Rd | 72 +++++++++++++++++++++++++-------------------------- man/cal.pos.Rd | 2 - man/netgwas2cross.Rd | 2 - man/simGeno.Rd | 2 - 7 files changed, 49 insertions(+), 49 deletions(-)
Title: Nicely Formatted Contingency Tables and Frequency Tables
Description: Nicely formatted frequency tables and contingency tables (1-way, 2-way, 3-way and 4-way tables), that can easily be exported to HTML or 'Office' documents. Designed to work with pipes.
Author: Mans Thulin [aut, cre],
Kajsa Grind [aut],
Stefan Furne [aut]
Maintainer: Mans Thulin <mans@statistikkonsult.com>
Diff between ivo.table versions 0.4 dated 2024-02-06 and 0.4.1 dated 2024-03-19
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 3 +++ R/ivo_tables.R | 13 +++++++------ 4 files changed, 16 insertions(+), 12 deletions(-)
Title: Weighted and Standard Elo Rates
Description: Estimates the standard and weighted Elo (WElo, Angelini et al., 2022 <doi:10.1016/j.ejor.2021.04.011>) rates. The current version provides Elo and WElo rates for tennis, according to different systems of weights (games or sets) and scale factors (constant, proportional to the number of matches, with more weight on Grand Slam matches or matches played on a specific surface). Moreover, the package gives the possibility of estimating the (bootstrap) standard errors for the rates. Finally, the package includes betting functions that automatically select the matches on which place a bet.
Author: Vincenzo Candila [aut, cre]
Maintainer: Vincenzo Candila <vcandila@unisa.it>
Diff between welo versions 0.1.3 dated 2023-01-05 and 0.1.4 dated 2024-03-19
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/functions.R | 2 +- build/partial.rdb |binary inst/CITATION | 36 +++++++++++++++++------------------- 6 files changed, 32 insertions(+), 30 deletions(-)
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible
outcome to evaluate the effectiveness of a new therapy (the true endpoint) is
difficult to measure. In such a situation, it can be an effective strategy to
replace the true endpoint by a (bio)marker that is easier to measure and that
allows for a prediction of the treatment effect on the true endpoint (a
surrogate endpoint). The package 'Surrogate' allows for an evaluation of the
appropriateness of a candidate surrogate endpoint based on the meta-analytic,
information-theoretic, and causal-inference frameworks. Part of this software
has been developed using funding provided from the European Union's Seventh
Framework Programme for research, technological development and demonstration
(Grant Agreement no 602552), the Special Research Fund (BOF) of Hasselt
University (BOF-number: BOF2OCPO3), GlaxoSmithKline Biologicals, Baekeland
Mandaat (HBC.2022.0145), and Johnson & Johnson Innovative Medicine.
Author: Wim Van Der Elst [cre, aut],
Florian Stijven [aut],
Fenny Ong [aut],
Paul Meyvisch [aut],
Alvaro Poveda [aut],
Ariel Alonso [aut],
Hannah Ensor [aut],
Christoper Weir [aut],
Geert Molenberghs [aut]
Maintainer: Wim Van Der Elst <wim.vanderelst@gmail.com>
Diff between Surrogate versions 3.2.4 dated 2024-02-29 and 3.2.5 dated 2024-03-19
DESCRIPTION | 16 ++++++++-------- MD5 | 34 +++++++++++++++++++++++++--------- NAMESPACE | 26 +++++++++++++++++++++++++- NEWS.md | 5 +++++ R/BifixedContCont.R | 3 +-- R/BimixedContCont.R | 12 ++++++------ R/Data.Processing.R | 6 +++++- R/MufixedContCont.MultS.R | 12 +++++++++++- R/MumixedContCont.MultS.R | 18 +++++++++++++----- R/SurvSurv.R | 15 +++++++++++++-- R/survbin.R |only R/survcat.R |only data/colorectal.rda |only data/colorectal4.rda |only man/colorectal.rd |only man/colorectal4.rd |only man/plot.survbin.Rd |only man/plot.survcat.Rd |only man/print.survbin.Rd |only man/print.survcat.Rd |only man/summary.survbin.Rd |only man/summary.survcat.Rd |only man/survbin.Rd |only man/survcat.Rd |only tests/testthat/test-survbin.R |only tests/testthat/test-survcat.R |only 26 files changed, 112 insertions(+), 35 deletions(-)
Title: Globally-Applicable Area Disaggregated General Ecosystem Toolbox
V3
Description: A framework to assist creation of marine ecosystem models,
generating either 'R' or 'C++' code which can then be optimised using
the 'TMB' package and standard 'R' tools. Principally designed to
reproduce gadget2 models in 'TMB', but can be extended beyond
gadget2's capabilities.
Kasper Kristensen, Anders Nielsen, Casper W. Berg, Hans Skaug, Bradley M. Bell (2016) <doi:10.18637/jss.v070.i05> "TMB: Automatic Differentiation and Laplace Approximation.".
Begley, J., & Howell, D. (2004) <https://core.ac.uk/download/pdf/225936648.pdf> "An overview of Gadget, the globally applicable area-disaggregated general ecosystem toolbox. ICES.".
Author: Jamie Lentin [aut, cre] ,
Bjarki Thor Elvarsson [aut] ,
William Butler [aut] ,
Marine and Freshwater Research Institute [cph]
Maintainer: Jamie Lentin <lentinj@shuttlethread.com>
Diff between gadget3 versions 0.10-1 dated 2023-08-24 and 0.11-1 dated 2024-03-19
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Title: Fast Change Point Detection via Sequential Gradient Descent
Description: Implements fast change point detection algorithm based on the
paper "Sequential Gradient Descent and Quasi-Newton's Method for
Change-Point Analysis" by Xianyang Zhang, Trisha Dawn
<https://proceedings.mlr.press/v206/zhang23b.html>. The algorithm is
based on dynamic programming with pruning and sequential gradient
descent. It is able to detect change points a magnitude faster than
the vanilla Pruned Exact Linear Time(PELT). The package includes
examples of linear regression, logistic regression, Poisson
regression, penalized linear regression data, and whole lot more
examples with custom cost function in case the user wants to use their
own cost function.
Author: Xingchi Li [aut, cre, cph] ,
Xianyang Zhang [aut, cph],
Trisha Dawn [aut, cph]
Maintainer: Xingchi Li <anthony.li@stat.tamu.edu>
Diff between fastcpd versions 0.12.1 dated 2024-03-12 and 0.12.2 dated 2024-03-19
fastcpd-0.12.1/fastcpd/tests/testthat/test-fastcpd-sanity.R |only fastcpd-0.12.2/fastcpd/DESCRIPTION | 7 fastcpd-0.12.2/fastcpd/MD5 | 72 fastcpd-0.12.2/fastcpd/NEWS.md | 4 fastcpd-0.12.2/fastcpd/R/RcppExports.R | 4 fastcpd-0.12.2/fastcpd/R/fastcpd.R | 10 fastcpd-0.12.2/fastcpd/build/vignette.rds |binary fastcpd-0.12.2/fastcpd/inst/doc/comparison-packages.R | 206 fastcpd-0.12.2/fastcpd/inst/doc/comparison-packages.Rmd | 100 fastcpd-0.12.2/fastcpd/inst/doc/comparison-packages.html | 5952 +++++++++- fastcpd-0.12.2/fastcpd/inst/doc/comparison-pelt.R | 1850 +++ fastcpd-0.12.2/fastcpd/inst/doc/comparison-pelt.Rmd | 955 + fastcpd-0.12.2/fastcpd/inst/doc/comparison-pelt.html | 1957 +++ fastcpd-0.12.2/fastcpd/inst/doc/examples-advanced.R | 122 fastcpd-0.12.2/fastcpd/inst/doc/examples-advanced.Rmd | 5 fastcpd-0.12.2/fastcpd/inst/doc/examples-advanced.html | 127 fastcpd-0.12.2/fastcpd/inst/doc/examples-custom-model.R | 166 fastcpd-0.12.2/fastcpd/inst/doc/examples-custom-model.Rmd | 44 fastcpd-0.12.2/fastcpd/inst/doc/examples-custom-model.html | 130 fastcpd-0.12.2/fastcpd/man/fastcpd.Rd | 3 fastcpd-0.12.2/fastcpd/man/fastcpd_ts.Rd | 6 fastcpd-0.12.2/fastcpd/man/fastcpd_var.Rd | 8 fastcpd-0.12.2/fastcpd/src/RcppExports.cpp | 9 fastcpd-0.12.2/fastcpd/src/fastcpd_class.cc | 4 fastcpd-0.12.2/fastcpd/src/fastcpd_classes.h | 3 fastcpd-0.12.2/fastcpd/src/fastcpd_impl.cc | 7 fastcpd-0.12.2/fastcpd/src/fastcpd_impl.h | 2 fastcpd-0.12.2/fastcpd/src/test-functions.cc | 7 fastcpd-0.12.2/fastcpd/tests/testthat/examples/fastcpd_ts.txt | 6 fastcpd-0.12.2/fastcpd/tests/testthat/examples/fastcpd_var.R | 8 fastcpd-0.12.2/fastcpd/tests/testthat/test-examples-fastcpd_mean-time.R | 4 fastcpd-0.12.2/fastcpd/tests/testthat/test-examples-fastcpd_ts.R | 4 fastcpd-0.12.2/fastcpd/tests/testthat/test-examples-fastcpd_var.R | 2 fastcpd-0.12.2/fastcpd/tests/testthat/test-vignettes-comparison-pelt.R |only fastcpd-0.12.2/fastcpd/vignettes/comparison-packages.Rmd | 100 fastcpd-0.12.2/fastcpd/vignettes/comparison-pelt.Rmd | 955 + fastcpd-0.12.2/fastcpd/vignettes/examples-advanced.Rmd | 5 fastcpd-0.12.2/fastcpd/vignettes/examples-custom-model.Rmd | 44 38 files changed, 12231 insertions(+), 657 deletions(-)
Title: Statistical Modeling and Assessment of Drought
Description: Provide tools for drought monitoring based on univariate and multivariate drought indicators.Statistical drought prediction based on Ensemble Streamflow Prediction (ESP), drought risk assessments, and drought propagation are also provided. Please see Hao Zengchao et al. (2017) <doi:10.1016/j.envsoft.2017.02.008>.
Author: Zengchao Hao
Maintainer: Zengchao Hao <z.hao4univ@gmail.com>
Diff between drought versions 1.1 dated 2022-01-16 and 1.2 dated 2024-03-19
DESCRIPTION | 10 +++--- MD5 | 6 +-- R/RunDS.R | 3 + man/PropagationMCC.Rd | 79 +++++++++++++++++++++++++------------------------- 4 files changed, 50 insertions(+), 48 deletions(-)
Title: Spatio-Temporal Point Pattern Methods, Model Fitting,
Diagnostics, Simulation, Local Tests
Description: Toolbox for different kinds of spatio-temporal analyses to be performed on observed point patterns, following the growing stream of literature on point process theory. This R package implements functions to perform different kinds of analyses on point processes, proposed in the papers (Siino, Adelfio, and Mateu 2018<doi:10.1007/s00477-018-1579-0>; Siino et al. 2018<doi:10.1002/env.2463>; Adelfio et al. 2020<doi:10.1007/s00477-019-01748-1>; D’Angelo, Adelfio, and Mateu 2021<doi:10.1016/j.spasta.2021.100534>; D’Angelo, Adelfio, and Mateu 2022<doi:10.1007/s00362-022-01338-4>; D’Angelo, Adelfio, and Mateu 2023<doi:10.1016/j.csda.2022.107679>). The main topics include modeling, statistical inference, and simulation issues on spatio-temporal point processes on Euclidean space and linear networks.
Author: Nicoletta D'Angelo [aut, cre] ,
Giada Adelfio [aut]
Maintainer: Nicoletta D'Angelo <nicoletta.dangelo@unipa.it>
Diff between stopp versions 0.1.1 dated 2023-07-03 and 0.2.0 dated 2024-03-19
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stopp-0.2.0/stopp/R/print.stlpm.R |only stopp-0.2.0/stopp/R/print.stp.R | 91 - stopp-0.2.0/stopp/R/print.stpm.R |only stopp-0.2.0/stopp/R/print.stppm.R | 127 +- stopp-0.2.0/stopp/R/rETASlp.R | 75 - stopp-0.2.0/stopp/R/rETASp.R | 439 ++++----- stopp-0.2.0/stopp/R/rstlpp.R | 167 +-- stopp-0.2.0/stopp/R/rstpp.R | 162 +-- stopp-0.2.0/stopp/R/sepstlppm.R | 123 +- stopp-0.2.0/stopp/R/sepstppm.R | 117 +- stopp-0.2.0/stopp/R/stcov.R |only stopp-0.2.0/stopp/R/stlgcppm.R | 1197 ++++++++++++------------- stopp-0.2.0/stopp/R/stp.R | 168 +-- stopp-0.2.0/stopp/R/stpm.R |only stopp-0.2.0/stopp/R/stppm.R | 514 ++++++---- stopp-0.2.0/stopp/R/summary.localdiag.R | 161 +-- stopp-0.2.0/stopp/R/summary.localtest.R | 166 +-- stopp-0.2.0/stopp/R/summary.locstppm.R | 108 +- stopp-0.2.0/stopp/R/summary.stcov.R |only stopp-0.2.0/stopp/R/summary.stlgcppm.R | 240 +---- stopp-0.2.0/stopp/R/summary.stlp.R | 81 - stopp-0.2.0/stopp/R/summary.stlpm.R |only stopp-0.2.0/stopp/R/summary.stp.R | 84 - stopp-0.2.0/stopp/R/summary.stpm.R |only stopp-0.2.0/stopp/R/summary.stppm.R | 123 +- stopp-0.2.0/stopp/data/chicagonet.rda |binary stopp-0.2.0/stopp/data/valenciacrimes.rda |binary stopp-0.2.0/stopp/man/chicagonet.Rd | 54 - 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stopp-0.2.0/stopp/man/print.localtest.Rd | 141 +- stopp-0.2.0/stopp/man/print.locstppm.Rd | 16 stopp-0.2.0/stopp/man/print.stcov.Rd |only stopp-0.2.0/stopp/man/print.stlgcppm.Rd | 62 - stopp-0.2.0/stopp/man/print.stlp.Rd | 23 stopp-0.2.0/stopp/man/print.stlpm.Rd |only stopp-0.2.0/stopp/man/print.stp.Rd | 24 stopp-0.2.0/stopp/man/print.stpm.Rd |only stopp-0.2.0/stopp/man/print.stppm.Rd | 29 stopp-0.2.0/stopp/man/rETASlp.Rd | 259 ++--- stopp-0.2.0/stopp/man/rETASp.Rd | 49 - stopp-0.2.0/stopp/man/rstlpp.Rd | 143 +- stopp-0.2.0/stopp/man/rstpp.Rd | 18 stopp-0.2.0/stopp/man/sepstlppm.Rd | 20 stopp-0.2.0/stopp/man/sepstppm.Rd | 14 stopp-0.2.0/stopp/man/stcov.Rd |only stopp-0.2.0/stopp/man/stlgcppm.Rd | 88 - stopp-0.2.0/stopp/man/stp.Rd | 28 stopp-0.2.0/stopp/man/stpm.Rd |only stopp-0.2.0/stopp/man/stppm.Rd | 116 ++ stopp-0.2.0/stopp/man/summary.localdiag.Rd | 61 - stopp-0.2.0/stopp/man/summary.localtest.Rd | 143 +- stopp-0.2.0/stopp/man/summary.locstppm.Rd | 16 stopp-0.2.0/stopp/man/summary.stcov.Rd |only stopp-0.2.0/stopp/man/summary.stlgcppm.Rd | 62 - stopp-0.2.0/stopp/man/summary.stlp.Rd | 18 stopp-0.2.0/stopp/man/summary.stlpm.Rd |only stopp-0.2.0/stopp/man/summary.stp.Rd | 24 stopp-0.2.0/stopp/man/summary.stpm.Rd |only stopp-0.2.0/stopp/man/summary.stppm.Rd | 31 stopp-0.2.0/stopp/man/valenciacrimes.Rd | 94 - 143 files changed, 6645 insertions(+), 7625 deletions(-)
Title: Multivariate Synthetic Control Method Using Time Series
Description: Three generalizations of the synthetic control method (which has
already an implementation in package 'Synth') are implemented: first,
'MSCMT' allows for using multiple outcome variables, second, time series
can be supplied as economic predictors, and third, a well-defined
cross-validation approach can be used.
Much effort has been taken to make the implementation as stable as possible
(including edge cases) without losing computational efficiency.
A detailed description of the main algorithms is given in
Becker and Klößner (2018) <doi:10.1016/j.ecosta.2017.08.002>.
Author: Martin Becker [aut, cre] ,
Stefan Kloessner [aut],
Karline Soetaert [com],
Jack Dongarra [cph],
R.J. Hanson [cph],
K.H. Haskell [cph],
Cleve Moler [cph],
LAPACK authors [cph]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>
Diff between MSCMT versions 1.3.9 dated 2023-11-29 and 1.4.0 dated 2024-03-19
MSCMT-1.3.9/MSCMT/vignettes/synth.out.RData |only MSCMT-1.4.0/MSCMT/DESCRIPTION | 15 ++- MSCMT-1.4.0/MSCMT/MD5 | 59 +++++++-------- MSCMT-1.4.0/MSCMT/NEWS | 22 +++++ MSCMT-1.4.0/MSCMT/R/Helpers.r | 3 MSCMT-1.4.0/MSCMT/R/MSCMT-package.r | 4 - MSCMT-1.4.0/MSCMT/R/ModularOptimization.r | 44 +++++------ MSCMT-1.4.0/MSCMT/R/atomOpt.r | 33 ++++---- MSCMT-1.4.0/MSCMT/R/improveSynth.r | 42 +++++++++- MSCMT-1.4.0/MSCMT/R/listFromLong.r | 22 ++--- MSCMT-1.4.0/MSCMT/R/mscmt.r | 50 ++++++++---- MSCMT-1.4.0/MSCMT/R/multiOpt.r | 8 +- MSCMT-1.4.0/MSCMT/R/prepare.r | 13 ++- MSCMT-1.4.0/MSCMT/build/partial.rdb |binary MSCMT-1.4.0/MSCMT/build/vignette.rds |binary MSCMT-1.4.0/MSCMT/inst/doc/CheckingSynth.R | 62 +++++++-------- MSCMT-1.4.0/MSCMT/inst/doc/CheckingSynth.Rmd | 62 +++++++-------- MSCMT-1.4.0/MSCMT/inst/doc/CheckingSynth.html | 90 +++++++++++++---------- MSCMT-1.4.0/MSCMT/inst/doc/UsingTimeSeries.R | 8 -- MSCMT-1.4.0/MSCMT/inst/doc/UsingTimeSeries.Rmd | 8 -- MSCMT-1.4.0/MSCMT/inst/doc/UsingTimeSeries.html | 20 ++--- MSCMT-1.4.0/MSCMT/inst/doc/WorkingWithMSCMT.R | 8 -- MSCMT-1.4.0/MSCMT/inst/doc/WorkingWithMSCMT.Rmd | 12 +-- MSCMT-1.4.0/MSCMT/inst/doc/WorkingWithMSCMT.html | 34 +++----- MSCMT-1.4.0/MSCMT/man/MSCMTfunction.Rd | 14 ++- MSCMT-1.4.0/MSCMT/man/MSCMTpackage.Rd | 20 +++++ MSCMT-1.4.0/MSCMT/man/improveSynth.Rd | 42 +++++++++- MSCMT-1.4.0/MSCMT/man/listFromLong.Rd | 22 ++--- MSCMT-1.4.0/MSCMT/vignettes/CheckingSynth.Rmd | 62 +++++++-------- MSCMT-1.4.0/MSCMT/vignettes/UsingTimeSeries.Rmd | 8 -- MSCMT-1.4.0/MSCMT/vignettes/WorkingWithMSCMT.Rmd | 12 +-- 31 files changed, 439 insertions(+), 360 deletions(-)
Title: Genotype by Environment (GxE) Analysis
Description: Analysis of multi environment data of plant breeding experiments
following the analyses described in Malosetti, Ribaut,
and van Eeuwijk (2013), <doi:10.3389/fphys.2013.00044>.
One of a series of statistical genetic packages for streamlining the analysis of
typical plant breeding experiments developed by Biometris.
Some functions have been created to be used in conjunction with the R
package 'asreml' for the 'ASReml' software, which can be obtained upon
purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r>).
Author: Bart-Jan van Rossum [aut, cre],
Fred van Eeuwijk [ctb] ,
Martin Boer [ctb],
Marcos Malosetti [ctb] ,
Daniela Bustos-Korts [ctb] ,
Emilie J Millet [ctb] ,
Joao Paulo [ctb] ,
Maikel Verouden [ctb] ,
Willem Kruijer [ctb] ,
Ron Wehrens [ctb] ,
Choazhi Zh [...truncated...]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenGxE versions 1.0.6 dated 2023-12-12 and 1.0.7 dated 2024-03-19
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 4 ++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/statgenGxE.html | 33 +++++++++++++++++---------------- tests/testthat/Rplots.pdf |binary tests/testthat/test-plots.R | 6 ++---- 8 files changed, 35 insertions(+), 32 deletions(-)
Title: Embedding and Clustering with Alignment for Spatial Datasets
Description: An efficient data integration method is provided for multiple spatial transcriptomics data with non-cluster-relevant effects such as the complex batch effects. It unifies spatial factor analysis simultaneously with spatial clustering and embedding alignment, requiring only partially shared cell/domain clusters across datasets. More details can be referred to Wei Liu, et al. (2023) <doi:10.1038/s41467-023-35947-w>.
Author: Wei Liu [aut, cre],
Yi Yang [aut],
Jin Liu [aut]
Maintainer: Wei Liu <liuweideng@gmail.com>
Diff between PRECAST versions 1.6.4 dated 2024-01-25 and 1.6.5 dated 2024-03-19
DESCRIPTION | 12 +- MD5 | 18 +-- R/main.R | 2 README.md | 4 build/vignette.rds |binary inst/doc/PRECAST.BreastCancer.html | 41 ++++--- inst/doc/PRECAST.DLPFC.html | 41 ++++--- inst/doc/PRECAST.DLPFC4.html | 41 ++++--- inst/doc/PRECAST.Simu.html | 191 +++++++++++++++++++------------------ inst/doc/PRECAST.html | 29 ++++- 10 files changed, 215 insertions(+), 164 deletions(-)
Title: Model Species Distributions by Estimating the Probability of
Occurrence Using Presence-Only Data
Description: Provides a likelihood-based approach to modeling species distributions using presence-only data. In contrast to the popular software program MAXENT, this approach yields estimates of the probability of occurrence, which is a natural descriptor of a species' distribution.
Author: Richard Chandler, Andy Royle and Roeland Kindt
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between maxlike versions 0.1-10 dated 2023-09-17 and 0.1-11 dated 2024-03-19
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 4 ++++ R/maxlike.R | 10 +++++++--- 4 files changed, 18 insertions(+), 10 deletions(-)
Title: Joint Dimension Reduction and Spatial Clustering
Description: Joint dimension reduction and spatial clustering is conducted for
Single-cell RNA sequencing and spatial transcriptomics data, and more details can be referred to
Wei Liu, Xu Liao, Yi Yang, Huazhen Lin, Joe Yeong, Xiang Zhou, Xingjie Shi and Jin Liu. (2022) <doi:10.1093/nar/gkac219>. It is not only computationally efficient and scalable to the sample size increment, but also is capable of choosing the smoothness parameter and the number of clusters as well.
Author: Wei Liu [aut, cre],
Yi Yang [aut],
Jin Liu [aut]
Maintainer: Wei Liu <liuweideng@gmail.com>
Diff between DR.SC versions 3.3 dated 2023-08-09 and 3.4 dated 2024-03-19
DESCRIPTION | 12 ++++++------ MD5 | 26 +++++++++++++------------- R/main.R | 6 ++---- README.md | 3 +++ build/vignette.rds |binary inst/doc/DR-SC.html | 40 ++++++++++++++++++++++++++++------------ inst/doc/DR.SC.DLPFC.R | 5 +++-- inst/doc/DR.SC.DLPFC.Rmd | 5 +++-- inst/doc/DR.SC.DLPFC.html | 25 +++++++++++++++++-------- inst/doc/DR.SC.Simu.R | 8 ++++---- inst/doc/DR.SC.Simu.Rmd | 8 ++++---- inst/doc/DR.SC.Simu.html | 26 +++++++++++++++++--------- vignettes/DR.SC.DLPFC.Rmd | 5 +++-- vignettes/DR.SC.Simu.Rmd | 8 ++++---- 14 files changed, 107 insertions(+), 70 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://activinsights.com/>, binary (.gt3x) and .csv-export data from 'Actigraph' <https://theactigraph.com> devices, and binary (.cwa) and .csv-export data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre],
Jairo H Migueles [aut] ,
Severine Sabia [ctb],
Matthew R Patterson [ctb],
Zhou Fang [ctb],
Joe Heywood [ctb],
Joan Capdevila Pujol [ctb],
Lena Kushleyeva [ctb],
Mathilde Chen [ctb],
Manasa Yerramalla [ctb],
Patrick Bos [...truncated...]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIR versions 3.0-6 dated 2024-02-22 and 3.0-9 dated 2024-03-19
DESCRIPTION | 23 +-- MD5 | 84 ++++++------ NEWS.md | 37 +++++ R/GGIR.R | 29 ---- R/HASPT.R | 119 ++++++++++------- R/applyExtFunction.R | 1 R/check_params.R | 8 - R/convertEpochData.R | 35 ++--- R/create_test_sleeplog_csv.R | 12 + R/extract_params.R | 3 R/g.conv.actlog.R | 2 R/g.convert.part2.long.R | 92 ++++++------- R/g.loadlog.R | 6 R/g.part1.R | 2 R/g.part3.R | 3 R/g.part4.R | 31 +++- R/g.part5.R | 22 ++- R/g.part5.classifyNaps.R | 1 R/g.part5.definedays.R | 102 +++++---------- R/g.part5_analyseSegment.R | 39 +++-- R/g.part5_initialise_ts.R | 27 ++-- R/g.report.part2.R | 1 R/g.report.part4.R | 6 R/g.sib.det.R | 24 +-- R/load_params.R | 5 R/read.myacc.csv.R | 50 ++++--- inst/doc/ExternalFunction.pdf |binary inst/doc/GGIR.Rmd | 9 - inst/doc/GGIR.html | 22 ++- inst/doc/GGIRParameters.Rmd | 4 inst/doc/GGIRParameters.html | 44 ++++-- man/GGIR-package.Rd | 4 man/GGIR.Rd | 21 ++- man/HASPT.Rd | 28 +--- man/g.part5.definedays.Rd | 6 man/g.part5.savetimeseries.Rd | 6 tests/testthat/test_chainof5parts.R | 7 - tests/testthat/test_convertExtEpochData.R | 14 +- tests/testthat/test_gloadlog.R | 70 +++++++--- tests/testthat/test_greadaccfile.R | 201 +++++++++++++++--------------- tests/testthat/test_load_check_params.R | 7 - vignettes/GGIR.Rmd | 9 - vignettes/GGIRParameters.Rmd | 4 43 files changed, 689 insertions(+), 531 deletions(-)
Title: Frequently Used Functions for Easy R Programming
Description: Some utility functions for validation, data manipulation or color palettes. These functions can be helpful to reduce internal codes everywhere in package development.
Author: Yuchen Li [aut, cre]
Maintainer: Yuchen Li <ycli1995@outlook.com>
Diff between easy.utils versions 0.0.3 dated 2023-10-17 and 0.0.4 dated 2024-03-19
DESCRIPTION | 6 +++--- MD5 | 12 +++++++----- NAMESPACE | 3 +++ NEWS.md | 4 ++++ R/color_palettes.R | 24 +++++++++--------------- R/verbose.R |only R/zzz.R | 1 + man/verboseMsg.Rd |only 8 files changed, 27 insertions(+), 23 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-12 0.2.3
2021-11-10 0.2.2