Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages.
These include e.g. measures like r-squared, intraclass correlation
coefficient (Nakagawa, Johnson & Schielzeth (2017)
<doi:10.1098/rsif.2017.0213>), root mean squared error or functions to
check models for overdispersion, singularity or zero-inflation and
more. Functions apply to a large variety of regression models,
including generalized linear models, mixed effects models and Bayesian
models. References: Lüdecke et al. (2021) <doi:10.21105/joss.03139>.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Remi Theriault [aut, ctb] ,
Vincent Arel-Bundock [ctb] ,
Martin J [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between performance versions 0.10.9 dated 2024-02-17 and 0.11.0 dated 2024-03-22
DESCRIPTION | 14 - MD5 | 93 ++++---- NAMESPACE | 25 ++ NEWS.md | 42 +++ R/check_distribution.R | 20 + R/check_htest.R | 62 +++-- R/check_itemscale.R | 5 R/check_model.R | 277 +++++++++++++++++++------ R/check_model_diagnostics.R | 96 ++++++++ R/check_normality.R | 33 ++ R/check_outliers.R | 70 ++++++ R/check_overdispersion.R | 166 +++++++++----- R/check_predictions.R | 4 R/check_residuals.R |only R/check_zeroinflation.R | 124 ++++++++--- R/helpers.R | 15 - R/r2.R | 3 R/r2_coxsnell.R | 3 R/r2_mcfadden.R | 3 R/r2_nagelkerke.R | 3 R/simulate_residuals.R |only build/partial.rdb |binary inst/WORDLIST | 8 man/check_model.Rd | 49 +++- man/check_outliers.Rd | 37 +++ man/check_overdispersion.Rd | 67 ++++-- man/check_predictions.Rd | 2 man/check_residuals.Rd |only man/check_zeroinflation.Rd | 55 ++++ man/simulate_residuals.Rd |only tests/testthat/_snaps/check_collinearity.md | 23 ++ tests/testthat/test-binned_residuals.R | 4 tests/testthat/test-check_autocorrelation.R | 5 tests/testthat/test-check_collinearity.R | 7 tests/testthat/test-check_convergence.R | 18 + tests/testthat/test-check_heterogeneity_bias.R | 2 tests/testthat/test-check_heteroskedasticity.R |only tests/testthat/test-check_homogeneity.R | 32 ++ tests/testthat/test-check_itemscale.R | 18 + tests/testthat/test-check_model.R | 30 ++ tests/testthat/test-check_normality.R | 75 ++++++ tests/testthat/test-check_outliers.R | 53 ++++ tests/testthat/test-check_overdispersion.R | 168 ++++++++++++++- tests/testthat/test-check_predictions.R | 1 tests/testthat/test-check_residuals.R |only tests/testthat/test-check_zeroinflation.R | 151 +++++++++++++ tests/testthat/test-checks.R | 32 ++ tests/testthat/test-helpers.R |only tests/testthat/test-icc.R | 51 ++++ tests/testthat/test-r2.R | 1 tests/testthat/test-r2_nagelkerke.R | 2 51 files changed, 1642 insertions(+), 307 deletions(-)
Title: The Fill-Mask Association Test
Description: The Fill-Mask Association Test ('FMAT')
is an integrative and probability-based method using
Masked Language Models to measure conceptual associations
(e.g., attitudes, biases, stereotypes, social norms, cultural values)
as propositions in natural language.
Supported language models include 'BERT'
<arXiv:1810.04805> and its variants available at 'Hugging Face'
<https://huggingface.co/models?pipeline_tag=fill-mask>.
Methodological references and installation guidance are provided at
<https://psychbruce.github.io/FMAT/>.
Author: Han-Wu-Shuang Bao [aut, cre]
Maintainer: Han-Wu-Shuang Bao <baohws@foxmail.com>
Diff between FMAT versions 2023.8 dated 2023-08-11 and 2024.3 dated 2024-03-22
DESCRIPTION | 35 +-- MD5 | 19 - NAMESPACE | 1 NEWS.md | 10 R/FMAT.R | 551 +++++++++++++++++++++++++++++++++------------------ README.md | 352 ++++++++++++++++++++++++++++---- man/BERT_download.Rd |only man/FMAT_load.Rd | 27 +- man/FMAT_query.Rd | 13 - man/FMAT_run.Rd | 117 +++++----- man/summary.fmat.Rd | 4 11 files changed, 797 insertions(+), 332 deletions(-)
Title: Climate Tools (Series Homogenization and Derived Products)
Description: Functions for the quality control, homogenization and missing data filling of climatological series and to obtain climatological summaries and grids from the results. Also functions to display wind-roses, meteograms, Walter&Lieth diagrams, and more.
Author: Jose A. Guijarro <jaguijarro21@gmail.com>
Maintainer: Jose A. Guijarro <jaguijarro21@gmail.com>
Diff between climatol versions 4.0.0 dated 2023-04-20 and 4.1.0 dated 2024-03-22
DESCRIPTION | 8 MD5 | 33 - NAMESPACE | 2 NEWS | 33 + R/clihomog.R | 975 ++++++++++++++++++++++++++--------------------- R/clitools.R | 148 ++++--- data/climatol_data.rda |binary man/Datasets.Rd | 4 man/IDFcurves.Rd | 2 man/dahgrid.Rd | 15 man/dahstat.Rd | 4 man/daily2climatol.Rd | 13 man/datrestore.Rd |only man/db2dat.Rd | 2 man/diagwl.Rd | 49 +- man/homogen.Rd | 31 - man/rclimdex2climatol.Rd | 16 man/windrose.Rd | 17 18 files changed, 772 insertions(+), 580 deletions(-)
Title: Univariate and Multivariate Spatial Modeling of Species
Abundance
Description: Fits single-species (univariate) and multi-species (multivariate) non-spatial and spatial abundance models in a Bayesian framework using Markov Chain Monte Carlo (MCMC). Spatial models are fit using Nearest Neighbor Gaussian Processes (NNGPs). Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Fits single-species and multi-species spatial and non-spatial versions of generalized linear mixed models (Gaussian, Poisson, Negative Binomial), N-mixture models (Royle 2004 <doi:10.1111/j.0006-341X.2004.00142.x>) and hierarchical distance sampling models (Royle, Dawson, Bates (2004) <doi:10.1890/03-3127>). Multi-species spatial models are fit using a spatial factor modeling approach with NNGPs for computational efficiency.
Author: Jeffrey Doser [aut, cre],
Andrew Finley [aut]
Maintainer: Jeffrey Doser <doserjef@msu.edu>
Diff between spAbundance versions 0.1.0 dated 2023-10-20 and 0.1.1 dated 2024-03-22
DESCRIPTION | 6 MD5 | 66 +-- NEWS.md | 6 R/DS.R | 164 ++++----- R/NMix.R | 144 ++++---- R/abund.R | 102 ++--- R/abundGaussian.R | 92 ++--- R/generics.R | 721 +++++++++++++++++++---------------------- R/lfMsAbund.R | 206 +++++------ R/lfMsAbundGaussian.R | 152 ++++---- R/lfMsDS.R | 290 ++++++++-------- R/lfMsNMix.R | 292 ++++++++-------- R/msAbund.R | 215 +++++++----- R/msAbundGaussian.R | 140 +++---- R/msDS.R | 262 +++++++------- R/msNMix.R | 260 +++++++------- R/sfMsAbund.R | 260 +++++++------- R/sfMsAbundGaussian.R | 216 ++++++------ R/sfMsDS.R | 336 +++++++++---------- R/sfMsNMix.R | 338 +++++++++---------- R/simAbund.R | 43 +- R/spAbund.R | 202 +++++------ R/spAbundGaussian.R | 140 +++---- R/spDS.R | 222 ++++++------ R/spNMix.R | 198 +++++------ R/svcAbund.R | 162 ++++----- R/svcMsAbund.R | 242 ++++++------- README.md | 43 +- build/partial.rdb |binary data/neonDWP.rda |binary man/neonDWP.rda.Rd | 6 src/sfMsNMixNNGPPredict.cpp | 64 +-- src/spAbundGaussianNNGP.cpp | 378 ++++++++++----------- src/svcMsAbundGaussianNNGP.cpp | 123 +++--- 34 files changed, 3061 insertions(+), 3030 deletions(-)
Title: Estuarine Bayesian Single-Station Estimation Method for
Ecosystem Metabolism
Description: Estimate ecosystem metabolism in a Bayesian framework for
individual water quality monitoring stations with continuous dissolved
oxygen time series. A mass balance equation is used that provides
estimates of parameters for gross primary production, respiration,
and gas exchange. Methods adapted from Grace et al. (2015)
<doi:10.1002/lom3.10011> and Wanninkhof (2014) <doi:10.4319/lom.2014.12.351>.
Author: Marcus Beck [aut, cre] ,
Maria Herrmann [aut],
Jill Arriola [aut] ,
Raymond Najjar [aut]
Maintainer: Marcus Beck <mbeck@tbep.org>
Diff between EBASE versions 1.0.0 dated 2024-03-08 and 1.0.1 dated 2024-03-22
DESCRIPTION | 8 +-- MD5 | 30 +++++++------- NEWS.md | 4 + R/ebase.R | 6 +- README.md | 2 build/vignette.rds |binary data/exres.rda |binary inst/doc/EBASE.Rmd | 6 +- inst/doc/EBASE.html | 39 +++++++++---------- inst/ebase_model.txt | 2 man/ebase.Rd | 6 +- man/ebase_eqboxy.Rd | 60 ++++++++++++++--------------- man/ebase_rho.Rd | 64 +++++++++++++++---------------- man/ebase_schmidt.Rd | 54 +++++++++++++------------- man/exres.Rd | 104 +++++++++++++++++++++++++-------------------------- vignettes/EBASE.Rmd | 6 +- 16 files changed, 199 insertions(+), 192 deletions(-)
Title: Calculate Indices of Dynamic Interaction for Wildlife Tracking
Data
Description: Dynamic interaction refers to spatial-temporal associations in the movements of two (or more) animals. This package provides tools for calculating a suite of indices used for quantifying dynamic interaction with wildlife telemetry data. For more information on each of the methods employed see the references within. The package (as of version >= 0.3) also has new tools for automating contact analysis in large tracking datasets. The package (as of version 1.0) uses the 'move2' class of objects for working with tracking dataset.
Author: Jed Long [aut, cre]
Maintainer: Jed Long <jed.long@uwo.ca>
Diff between wildlifeDI versions 0.5.1 dated 2023-11-13 and 1.0.0 dated 2024-03-22
wildlifeDI-0.5.1/wildlifeDI/R/FilterTraj.r |only wildlifeDI-0.5.1/wildlifeDI/R/conContext.R |only wildlifeDI-0.5.1/wildlifeDI/R/conMatrix.R |only wildlifeDI-0.5.1/wildlifeDI/R/conPairs.R |only wildlifeDI-0.5.1/wildlifeDI/R/conSpatial.r |only wildlifeDI-0.5.1/wildlifeDI/R/conSummary.R |only wildlifeDI-0.5.1/wildlifeDI/R/conTemporal.R |only wildlifeDI-0.5.1/wildlifeDI/R/ltraj2sf.R |only wildlifeDI-0.5.1/wildlifeDI/R/mockhunt.R |only wildlifeDI-0.5.1/wildlifeDI/R/sf2ltraj.R |only wildlifeDI-0.5.1/wildlifeDI/data/does.RData |only wildlifeDI-0.5.1/wildlifeDI/data/mockhunt.RData |only wildlifeDI-0.5.1/wildlifeDI/man/FilterTraj.Rd |only wildlifeDI-0.5.1/wildlifeDI/man/conContext.Rd |only wildlifeDI-0.5.1/wildlifeDI/man/conMatrix.Rd |only wildlifeDI-0.5.1/wildlifeDI/man/conPairs.Rd |only wildlifeDI-0.5.1/wildlifeDI/man/conSpatial.Rd |only wildlifeDI-0.5.1/wildlifeDI/man/conSummary.Rd |only wildlifeDI-0.5.1/wildlifeDI/man/conTemporal.Rd |only wildlifeDI-0.5.1/wildlifeDI/man/ltraj2sf.Rd |only wildlifeDI-0.5.1/wildlifeDI/man/mockhunt.Rd |only wildlifeDI-0.5.1/wildlifeDI/man/sf2ltraj.Rd |only wildlifeDI-1.0.0/wildlifeDI/DESCRIPTION | 20 wildlifeDI-1.0.0/wildlifeDI/MD5 | 123 - wildlifeDI-1.0.0/wildlifeDI/NAMESPACE | 28 wildlifeDI-1.0.0/wildlifeDI/NEWS | 7 wildlifeDI-1.0.0/wildlifeDI/R/Ca.R | 67 wildlifeDI-1.0.0/wildlifeDI/R/Cr.R | 125 - wildlifeDI-1.0.0/wildlifeDI/R/Cs.r | 94 - wildlifeDI-1.0.0/wildlifeDI/R/DI.R | 265 ++- wildlifeDI-1.0.0/wildlifeDI/R/Don.R | 152 + wildlifeDI-1.0.0/wildlifeDI/R/GetSimultaneous.R | 66 wildlifeDI-1.0.0/wildlifeDI/R/GetTO.r | 59 wildlifeDI-1.0.0/wildlifeDI/R/HAI.R | 133 + wildlifeDI-1.0.0/wildlifeDI/R/IAB.R | 235 +- wildlifeDI-1.0.0/wildlifeDI/R/Lixn.R | 287 ++- wildlifeDI-1.0.0/wildlifeDI/R/Prox.R | 130 - wildlifeDI-1.0.0/wildlifeDI/R/checkTO.R | 105 + wildlifeDI-1.0.0/wildlifeDI/R/conDisplacement.R | 86 - wildlifeDI-1.0.0/wildlifeDI/R/conPhase.R | 35 wildlifeDI-1.0.0/wildlifeDI/R/conProcess.R | 376 +++- wildlifeDI-1.0.0/wildlifeDI/R/conTimelag.R |only wildlifeDI-1.0.0/wildlifeDI/R/dcPlot.R | 110 - wildlifeDI-1.0.0/wildlifeDI/R/ltraj_move2.R |only wildlifeDI-1.0.0/wildlifeDI/R/move2_ltraj.R |only wildlifeDI-1.0.0/wildlifeDI/R/wildlifeDI-package.r | 24 wildlifeDI-1.0.0/wildlifeDI/README.md | 432 +---- wildlifeDI-1.0.0/wildlifeDI/data/deer.rdata |binary wildlifeDI-1.0.0/wildlifeDI/data/does.rdata |only wildlifeDI-1.0.0/wildlifeDI/inst/doc/wildlifeDI-vignette-contact_analysis.R | 221 -- wildlifeDI-1.0.0/wildlifeDI/inst/doc/wildlifeDI-vignette-contact_analysis.Rmd | 332 +--- wildlifeDI-1.0.0/wildlifeDI/inst/doc/wildlifeDI-vignette-contact_analysis.html | 786 +++------- wildlifeDI-1.0.0/wildlifeDI/inst/doc/wildlifeDI-vignette.R | 76 wildlifeDI-1.0.0/wildlifeDI/inst/doc/wildlifeDI-vignette.html | 492 ++---- wildlifeDI-1.0.0/wildlifeDI/inst/doc/wildlifeDI-vignette.rmd | 127 - wildlifeDI-1.0.0/wildlifeDI/man/Ca.Rd | 15 wildlifeDI-1.0.0/wildlifeDI/man/Cr.Rd | 13 wildlifeDI-1.0.0/wildlifeDI/man/Cs.Rd | 10 wildlifeDI-1.0.0/wildlifeDI/man/DI.Rd | 20 wildlifeDI-1.0.0/wildlifeDI/man/Don.Rd | 27 wildlifeDI-1.0.0/wildlifeDI/man/GetSimultaneous.Rd | 20 wildlifeDI-1.0.0/wildlifeDI/man/GetTO.Rd | 21 wildlifeDI-1.0.0/wildlifeDI/man/HAI.Rd | 41 wildlifeDI-1.0.0/wildlifeDI/man/IAB.Rd | 24 wildlifeDI-1.0.0/wildlifeDI/man/Lixn.Rd | 50 wildlifeDI-1.0.0/wildlifeDI/man/Prox.Rd | 28 wildlifeDI-1.0.0/wildlifeDI/man/checkTO.Rd | 20 wildlifeDI-1.0.0/wildlifeDI/man/conDisplacement.Rd | 14 wildlifeDI-1.0.0/wildlifeDI/man/conPhase.Rd | 8 wildlifeDI-1.0.0/wildlifeDI/man/conProcess.Rd | 22 wildlifeDI-1.0.0/wildlifeDI/man/conTimelag.Rd |only wildlifeDI-1.0.0/wildlifeDI/man/dcPlot.Rd | 10 wildlifeDI-1.0.0/wildlifeDI/man/ltraj_move2.Rd |only wildlifeDI-1.0.0/wildlifeDI/man/move2_ltraj.Rd |only wildlifeDI-1.0.0/wildlifeDI/man/wildlifeDI-package.Rd | 8 wildlifeDI-1.0.0/wildlifeDI/vignettes/wildlifeDI-vignette-contact_analysis.Rmd | 332 +--- wildlifeDI-1.0.0/wildlifeDI/vignettes/wildlifeDI-vignette.rmd | 127 - 77 files changed, 2566 insertions(+), 3237 deletions(-)
Title: Parameter Estimation of Item Response Theory with Estimation of
Latent Distribution
Description: Item response theory (IRT) parameter estimation using marginal maximum likelihood and expectation-maximization algorithm
(Bock & Aitkin, 1981 <doi:10.1007/BF02293801>).
Within parameter estimation algorithm, several methods for latent distribution estimation are available.
Reflecting some features of the true latent distribution, these latent distribution estimation methods can possibly enhance the estimation accuracy and free the normality assumption on the latent distribution.
Author: Seewoo Li [aut, cre, cph]
Maintainer: Seewoo Li <cu@yonsei.ac.kr>
Diff between IRTest versions 1.12.0 dated 2023-10-16 and 2.0.0 dated 2024-03-22
DESCRIPTION | 8 MD5 | 69 +- NAMESPACE | 6 NEWS.md | 10 R/DataGeneration.R | 95 ++ R/IRTest_Cont.R |only R/IRTest_Dich.R | 8 R/IRTest_Mix.R | 6 R/IRTest_Poly.R | 6 R/anova.IRTest.R | 16 R/factor_score.R | 40 + R/information.R | 29 R/non_exporting_functions.R | 147 ++++ R/plot.IRTest.R | 2 R/plot_item.R | 92 +- R/print.IRTest.R | 11 R/reliability.R | 102 +-- R/summary.IRTest.R | 16 R/sysdata.rda |binary README.md | 13 build/vignette.rds |binary inst/CITATION | 6 inst/doc/vignette_for_IRTest.R | 185 ++++- inst/doc/vignette_for_IRTest.Rmd | 361 ++++++++++ inst/doc/vignette_for_IRTest.html | 1250 ++++++++++++++++++++++++-------------- man/DataGeneration.Rd | 25 man/IRTest_Cont.Rd |only man/IRTest_Dich.Rd | 6 man/IRTest_Mix.Rd | 4 man/IRTest_Poly.Rd | 4 man/anova.IRTest.Rd | 6 man/factor_score.Rd | 13 man/plot.IRTest.Rd | 2 man/plot_item.Rd | 2 man/reliability.Rd | 2 tests/testthat/test-IRTest_Cont.R |only vignettes/vignette_for_IRTest.Rmd | 361 ++++++++++ 37 files changed, 2146 insertions(+), 757 deletions(-)
Title: Goodness-of-Fit Methods for Complete and Right-Censored Data
Description: Graphical tools and goodness-of-fit tests for complete and right-censored data:
1. Kolmogorov-Smirnov, Cramér-von Mises, and Anderson-Darling tests,
which use the empirical distribution function for complete data
and are extended for right-censored data.
2. Generalized chi-squared-type test, which is based on the squared
differences between observed and expected counts using random
cells with right-censored data.
3. A series of graphical tools such as probability or cumulative hazard
plots to guide the decision about the most suitable parametric model
for the data.
Author: Klaus Langohr [aut, cre],
Mireia Besalu [aut],
Matilde Francisco [aut],
Guadalupe Gomez [aut]
Maintainer: Klaus Langohr <klaus.langohr@upc.edu>
Diff between GofCens versions 0.97 dated 2024-03-13 and 0.98 dated 2024-03-22
DESCRIPTION | 8 ++-- MD5 | 6 +-- R/chisqcens.R | 87 ++++++++++++++++++++++++------------------------- man/GofCens-package.Rd | 4 +- 4 files changed, 53 insertions(+), 52 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018)
<DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] ,
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 2.18.0 dated 2024-02-23 and 2.19.0 dated 2024-03-22
DESCRIPTION | 12 +-- MD5 | 19 +++-- NAMESPACE | 2 NEWS.md | 4 + R/fmrs.R |only R/mrs_data_proc.R | 11 ++- R/varpro.R | 7 +- R/varpro_3_para.R | 9 ++ inst/doc/spant-intro.html | 132 +++++++++++++++++++------------------- inst/doc/spant-preprocessing.html | 4 - man/gen_bold_rf.Rd |only man/gen_trap_rf.Rd |only 12 files changed, 113 insertions(+), 87 deletions(-)
Title: A Common API to Modeling and Analysis Functions
Description: A common interface is provided to allow users to specify a
model without having to remember the different argument names across
different functions or computational engines (e.g. 'R', 'Spark',
'Stan', 'H2O', etc).
Author: Max Kuhn [aut, cre],
Davis Vaughan [aut],
Emil Hvitfeldt [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between parsnip versions 1.2.0 dated 2024-02-16 and 1.2.1 dated 2024-03-22
DESCRIPTION | 12 ++++++------ MD5 | 28 ++++++++++++++-------------- NAMESPACE | 1 + NEWS.md | 6 ++++++ R/aaa_models.R | 2 +- R/fit_helpers.R | 18 ++++++++++++------ R/glmnet-engines.R | 2 +- R/tidy_glmnet.R | 6 ++++++ R/translate.R | 2 -- README.md | 2 +- build/parsnip.pdf |binary build/stage23.rdb |binary man/tidy._elnet.Rd | 3 +++ tests/testthat.R | 11 +---------- tests/testthat/test_fit_interfaces.R | 17 +++++++++++++++++ 15 files changed, 69 insertions(+), 41 deletions(-)
Title: Cox MultiBlock Survival
Description: This software package provides Cox survival analysis for high-dimensional and multiblock datasets.
It encompasses a suite of functions dedicated from the classical Cox regression to newest analysis,
including Cox proportional hazards model, Stepwise Cox regression, and Elastic-Net Cox regression,
Sparse Partial Least Squares Cox regression (sPLS-COX) incorporating three distinct strategies,
and two Multiblock-PLS Cox regression (MB-sPLS-COX) methods. This tool is designed to adeptly handle
high-dimensional data, and provides tools for cross-validation, plot generation, and additional resources
for interpreting results. While references are available within the corresponding functions,
key literature is mentioned below.
Terry M Therneau (2024) <https://CRAN.R-project.org/package=survival>,
Noah Simon et al. (2011) <doi:10.18637/jss.v039.i05>,
Philippe Bastien et al. (2005) <doi:10.1016/j.csda.2004.02.005>,
Philippe Bastien (2008) <doi:10.1016/j.chemolab.2007.09.009& [...truncated...]
Author: Pedro Salguero Garcia [aut, cre, rev]
,
Sonia Tarazona Campos [ths],
Ana Conesa Cegarra [ths],
Kassu Mehari Beyene [ctb],
Luis Meira Machado [ctb],
Marta Sestelo [ctb],
Artur Araujo [ctb]
Maintainer: Pedro Salguero Garcia <pedrosalguerog@gmail.com>
Diff between Coxmos versions 1.0.0 dated 2024-03-12 and 1.0.1 dated 2024-03-22
DESCRIPTION | 6 MD5 | 20 build/partial.rdb |binary inst/doc/Coxmos-MO-pipeline.R | 52 - inst/doc/Coxmos-MO-pipeline.Rmd | 1880 ++++++++++++++++++------------------- inst/doc/Coxmos-MO-pipeline.html | 594 +++++------ inst/doc/Coxmos-pipeline.R | 27 inst/doc/Coxmos-pipeline.Rmd | 1964 +++++++++++++++++++-------------------- inst/doc/Coxmos-pipeline.html | 1000 +++++++++---------- vignettes/Coxmos-MO-pipeline.Rmd | 1880 ++++++++++++++++++------------------- vignettes/Coxmos-pipeline.Rmd | 1964 +++++++++++++++++++-------------------- 11 files changed, 4660 insertions(+), 4727 deletions(-)
Title: Parametric Statistical Modelling and Inference for the
'spatstat' Family
Description: Functionality for parametric statistical modelling and inference for spatial data,
mainly spatial point patterns, in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Supports parametric modelling, formal statistical inference, and model validation.
Parametric models include Poisson point processes, Cox point processes, Neyman-Scott cluster processes, Gibbs point processes and determinantal point processes. Models can be fitted to data using maximum likelihood, maximum pseudolikelihood, maximum composite likelihood and the method of minimum contrast. Fitted models can be simulated and predicted. Formal inference includes hypothesis tests (quadrat counting tests, Cressie-Read tests, Clark-Evans test, Berman test, Diggle-Cressie-Loosmore-Ford test, scan test, studentised permutation test, segregation test, ANOVA tests of fitted models, adjusted composite likelihood ratio test, envelope t [...truncated...]
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Achmad Choiruddin [ctb, cph],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb],
Julian Gilbey [ctb],
Yongtao [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.model versions 3.2-10 dated 2024-02-02 and 3.2-11 dated 2024-03-22
DESCRIPTION | 18 +++++++++--------- MD5 | 12 ++++++------ NEWS | 11 +++++++++++ R/predict.ppm.R | 4 ++-- R/sysdata.rda |binary inst/doc/packagesizes.txt | 1 + tests/testsK.R | 8 +------- 7 files changed, 30 insertions(+), 24 deletions(-)
More information about spatstat.model at CRAN
Permanent link
Title: Convert Country Names and Country Codes
Description: Standardize country names, convert them into one of 40
different coding schemes, convert between coding schemes, and assign
region descriptors.
Author: Vincent Arel-Bundock [aut, cre]
,
CJ Yetman [ctb] ,
Nils Enevoldsen [ctb] ,
Etienne Bacher [ctb] ,
Samuel Meichtry [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between countrycode versions 1.5.0 dated 2023-05-30 and 1.6.0 dated 2024-03-22
countrycode-1.5.0/countrycode/man/countrycode-package.Rd |only countrycode-1.6.0/countrycode/DESCRIPTION | 15 - countrycode-1.6.0/countrycode/MD5 | 24 +- countrycode-1.6.0/countrycode/NEWS.md | 59 +++-- countrycode-1.6.0/countrycode/R/countrycode-package.R | 6 countrycode-1.6.0/countrycode/R/countrycode.R | 104 ++++++---- countrycode-1.6.0/countrycode/R/countryname.R | 16 - countrycode-1.6.0/countrycode/data/codelist.rda |binary countrycode-1.6.0/countrycode/data/codelist_panel.rda |binary countrycode-1.6.0/countrycode/man/countrycode.Rd | 15 - countrycode-1.6.0/countrycode/man/countryname.Rd | 14 + countrycode-1.6.0/countrycode/man/figures |only countrycode-1.6.0/countrycode/tests/testthat/data-known-name-variations.R | 4 countrycode-1.6.0/countrycode/tests/testthat/test-countryname.R | 25 ++ 14 files changed, 172 insertions(+), 110 deletions(-)
Title: Recursive Non-Additive Emulator for Multi-Fidelity Data
Description: Performs RNA emulation and active learning proposed by Heo and Sung (2023+) <arXiv:2309.11772> for multi-fidelity computer experiments. The RNA emulator is particularly useful when the simulations with different fidelity level are nonlinearly correlated. The hyperparameters in the model are estimated by maximum likelihood estimation.
Author: Junoh Heo [aut, cre],
Chih-Li Sung [aut]
Maintainer: Junoh Heo <heojunoh@msu.edu>
Diff between RNAmf versions 0.1.1 dated 2024-03-16 and 0.1.2 dated 2024-03-22
DESCRIPTION | 6 ++--- MD5 | 26 +++++++++++----------- R/ALC.R | 3 +- R/ALM.R | 2 + R/ALMC.R | 2 + R/RNAmf_three_level.R | 53 +++++++++++++++++++++++++++++++++++++++++++++ R/RNAmf_two_level.R | 37 +++++++++++++++++++++++++++++++ R/predict.RNAmf.R | 3 -- man/ALC_RNAmf.Rd | 2 + man/ALMC_RNAmf.Rd | 2 + man/ALM_RNAmf.Rd | 2 + man/RNAmf_three_level.Rd | 55 +++++++++++++++++++++++++++++++++++++++++++++++ man/RNAmf_two_level.Rd | 39 +++++++++++++++++++++++++++++++++ man/predict.Rd | 4 --- 14 files changed, 214 insertions(+), 22 deletions(-)
Title: Miscellaneous Useful Functions Including LaTeX Tables, Kalman
Filtering, QQplots with Simulation-Based Confidence Intervals
and Development Tools
Description: Implementing various things including functions for LaTeX tables,
the Kalman filter, QQ-plots with simulation-based confidence intervals, web scraping, development tools, relative risk and odds
rati, GARCH(1,1) Forecasting.
Author: Benjamin M. Taylor
Maintainer: Benjamin M. Taylor <benjamin.taylor.software@gmail.com>
Diff between miscFuncs versions 1.5-7 dated 2023-10-29 and 1.5-8 dated 2024-03-22
DESCRIPTION | 13 +++++++------ MD5 | 15 ++++++++++----- NAMESPACE | 3 +++ R/garchForecast.R |only R/zzz.R | 1 + build/vignette.rds |binary inst/doc/miscFuncs.pdf |binary man/fcastGARCH.Rd |only man/hCreate.Rd |only man/lr2fact.Rd |only man/yhIterate.Rd |only 11 files changed, 21 insertions(+), 11 deletions(-)
Title: Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'
Description: Simplifies custom 'CSS' styling of both 'shiny' and
'rmarkdown' via 'Bootstrap' 'Sass'. Supports 'Bootstrap' 3, 4 and 5 as
well as their various 'Bootswatch' themes. An interactive widget is
also provided for previewing themes in real time.
Author: Carson Sievert [aut, cre] ,
Joe Cheng [aut],
Garrick Aden-Buie [aut] ,
Posit Software, PBC [cph, fnd],
Bootstrap contributors [ctb] ,
Twitter, Inc [cph] ,
Javi Aguilar [ctb, cph] ,
Thomas Park [ctb, cph] ,
PayPal [ctb, cph]
Maintainer: Carson Sievert <carson@posit.co>
Diff between bslib versions 0.6.1 dated 2023-11-28 and 0.6.2 dated 2024-03-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ README.md | 2 +- tests/testthat/test-fill.R | 4 ---- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Easily Create Fully Randomized 'Moodle' Test Questions
Description: Routines to generate fully randomized 'moodle' quizzes. It also contains 15 examples and a 'shiny' app.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between moodlequizR versions 2.0.2 dated 2024-03-15 and 2.1.0 dated 2024-03-22
DESCRIPTION | 10 ++++---- MD5 | 20 ++++++++--------- NEWS.md | 7 ++++- build/vignette.rds |binary inst/doc/moodlequizR.R | 8 +++--- inst/doc/moodlequizR.Rmd | 6 +++++ inst/doc/moodlequizR.html | 29 +++++++++++++++++------- inst/shinymoodlequizR/server.R | 48 +++++++++++++++++++++++++++++++++-------- inst/shinymoodlequizR/ui.R | 10 +++++--- vignettes/figure1.png |binary vignettes/moodlequizR.Rmd | 6 +++++ 11 files changed, 101 insertions(+), 43 deletions(-)
Title: Tabular Data Suppression using Gaussian Elimination
Description: A statistical disclosure control tool to protect tables by suppression
using the Gaussian elimination secondary suppression algorithm. A suggestion is
to start by working with functions SuppressSmallCounts() and
SuppressDominantCells(). These functions use primary suppression functions for
the minimum frequency rule and the dominance rule, respectively. Novel
functionality for suppression of disclosive cells is also included. General
primary suppression functions can be supplied as input to the general working
horse function, GaussSuppressionFromData(). Suppressed frequencies can be
replaced by synthetic decimal numbers as described in
Langsrud (2019) <doi:10.1007/s11222-018-9848-9>.
Author: Oeyvind Langsrud [aut, cre],
Daniel Lupp [aut],
Hege Boevelstad [ctb],
Statistics Norway [cph]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between GaussSuppression versions 0.8.0 dated 2024-02-02 and 0.8.3 dated 2024-03-22
DESCRIPTION | 10 - MD5 | 28 ++- NAMESPACE | 6 NEWS.md | 8 R/FixRiskyIntervals.R |only R/GaussSuppressionFromData.R | 25 ++ R/IncrementalTimeSuppression.R | 18 + R/Intervals.R | 297 +++++++++++++++++++------------- R/NewIndependentIdx.R |only R/OutputFixRiskyIntervals.R |only R/OutputIntervalIteration.R |only R/PrimaryFromRisky.R |only R/RangeLimits.R |only R/SmartOrder.R |only man/ComputeIntervals.Rd | 2 man/FixRiskyIntervals.Rd |only man/GaussSuppressionFromData.Rd | 24 ++ man/PrimaryFromRiskyDefault.Rd |only man/RangeLimitsDefault.Rd |only man/RangeOutputFunction.Rd |only tests/testthat/test-FixRiskyIntervals.R |only 21 files changed, 276 insertions(+), 142 deletions(-)
More information about GaussSuppression at CRAN
Permanent link
Title: Optimal Nonparametric Testing of Missing Completely at Random
Description: Provides functions for carrying out nonparametric hypothesis tests of the MCAR hypothesis based on the theory of Frechet classes and compatibility. Also gives functions for computing halfspace representations of the marginal polytope and related geometric objects.
Author: Thomas B. Berrett <tom.berrett@warwick.ac.uk> [aut,cre] , Alberto Bordino <alberto.bordino@warwick.ac.uk> [aut], Danat Duisenbekov <dd583@cam.ac.uk> [aut], Sean Jaffe <scj47@cam.ac.uk> [aut], Richard J. Samworth <r.samworth@statslab.cam.ac.uk> [aut]
Maintainer: Thomas B. Berrett <tom.berrett@warwick.ac.uk>
Diff between MCARtest versions 1.2 dated 2024-01-19 and 1.2.1 dated 2024-03-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NAMESPACE | 4 ++-- build/partial.rdb |binary 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Bayesian Emulation of Computer Programs
Description: Allows one to estimate the output of a computer program,
as a function of the input parameters, without actually running it.
The computer program is assumed to be a Gaussian process, whose
parameters are estimated using Bayesian techniques that give a PDF of
expected program output. This PDF is conditional on a training set
of runs, each consisting of a point in parameter space and the model
output at that point. The emphasis is on complex codes that take
weeks or months to run, and that have a large number of undetermined
input parameters; many climate prediction models fall into this
class. The emulator essentially determines Bayesian posterior
estimates of the PDF of the output of a model, conditioned on results
from previous runs and a user-specified prior linear model. The
package includes functionality to evaluate quadratic forms
efficiently.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between emulator versions 1.2-21 dated 2021-04-25 and 1.2-24 dated 2024-03-22
emulator-1.2-21/emulator/inst/doc/quad_form_test.R |only emulator-1.2-21/emulator/inst/doc/quad_form_test.Rmd |only emulator-1.2-21/emulator/inst/doc/quad_form_test.html |only emulator-1.2-21/emulator/vignettes/quad_form_test.Rmd |only emulator-1.2-24/emulator/DESCRIPTION | 6 +- emulator-1.2-24/emulator/MD5 | 42 +++++++++--------- emulator-1.2-24/emulator/README.md |only emulator-1.2-24/emulator/build/partial.rdb |binary emulator-1.2-24/emulator/build/vignette.rds |binary emulator-1.2-24/emulator/data/expert.estimates.rda |binary emulator-1.2-24/emulator/data/results.table.rda |binary emulator-1.2-24/emulator/data/toy.rda |binary emulator-1.2-24/emulator/inst/CITATION | 9 +-- emulator-1.2-24/emulator/inst/doc/emulex.R | 18 +++---- emulator-1.2-24/emulator/inst/doc/emulex.Rnw | 34 ++++++++------ emulator-1.2-24/emulator/inst/doc/emulex.pdf |binary emulator-1.2-24/emulator/inst/emulator_stickermaker.R |only emulator-1.2-24/emulator/inst/quad_form_test.Rmd |only emulator-1.2-24/emulator/man/estimator.Rd | 6 +- emulator-1.2-24/emulator/man/figures |only emulator-1.2-24/emulator/man/optimal.scales.Rd | 13 +++-- emulator-1.2-24/emulator/man/quad.form.Rd | 6 +- emulator-1.2-24/emulator/man/regressor.basis.Rd | 2 emulator-1.2-24/emulator/man/sample.n.fit.Rd | 3 - emulator-1.2-24/emulator/vignettes/emulex.Rnw | 34 ++++++++------ emulator-1.2-24/emulator/vignettes/val.txt |only emulator-1.2-24/emulator/vignettes/z.txt |only 27 files changed, 89 insertions(+), 84 deletions(-)
Title: Random Forest with Multivariate Longitudinal Predictors
Description: Based on random forest principle, 'DynForest' is able to include
multiple longitudinal predictors to provide individual predictions.
Longitudinal predictors are modeled through the random forest. The
methodology is fully described for a survival outcome in:
Devaux, Helmer, Genuer & Proust-Lima (2023)
<doi: 10.1177/09622802231206477>.
Author: Anthony Devaux [aut, cre] ,
Robin Genuer [aut] ,
Cecile Proust-Lima [aut] ,
Louis Capitaine [aut]
Maintainer: Anthony Devaux <anthony.devauxbarault@gmail.com>
Diff between DynForest versions 1.1.2 dated 2023-12-11 and 1.1.3 dated 2024-03-22
DynForest-1.1.2/DynForest/R/read_Xarg.R |only DynForest-1.1.2/DynForest/R/var_split.R |only DynForest-1.1.2/DynForest/R/var_split_surv.R |only DynForest-1.1.2/DynForest/man/read.Xarg.Rd |only DynForest-1.1.2/DynForest/man/var_split.Rd |only DynForest-1.1.2/DynForest/man/var_split_surv.Rd |only DynForest-1.1.3/DynForest/DESCRIPTION | 6 DynForest-1.1.3/DynForest/MD5 | 50 +- DynForest-1.1.3/DynForest/NAMESPACE | 1 DynForest-1.1.3/DynForest/NEWS.md | 6 DynForest-1.1.3/DynForest/R/DynForest.R | 7 DynForest-1.1.3/DynForest/R/DynTree.R | 471 +++++++++------------- DynForest-1.1.3/DynForest/R/DynTree_surv.R | 462 ++++++++------------- DynForest-1.1.3/DynForest/R/Fact_partitions.R | 13 DynForest-1.1.3/DynForest/R/OOB_rfshape.R | 34 - DynForest-1.1.3/DynForest/R/OOB_tree.R | 18 DynForest-1.1.3/DynForest/R/checking.R | 20 DynForest-1.1.3/DynForest/R/getParamMM.R | 31 - DynForest-1.1.3/DynForest/R/plot.R | 14 DynForest-1.1.3/DynForest/R/pred_MMT.R | 16 DynForest-1.1.3/DynForest/R/predict.R | 29 - DynForest-1.1.3/DynForest/R/print.R | 28 + DynForest-1.1.3/DynForest/R/var_split_factor.R |only DynForest-1.1.3/DynForest/R/var_split_long.R |only DynForest-1.1.3/DynForest/R/var_split_num.R |only DynForest-1.1.3/DynForest/README.md | 10 DynForest-1.1.3/DynForest/man/checking.Rd | 5 DynForest-1.1.3/DynForest/man/plot.DynForest.Rd | 6 DynForest-1.1.3/DynForest/man/print.DynForest.Rd | 3 DynForest-1.1.3/DynForest/man/var_split_factor.Rd |only DynForest-1.1.3/DynForest/man/var_split_long.Rd |only DynForest-1.1.3/DynForest/man/var_split_num.Rd |only 32 files changed, 560 insertions(+), 670 deletions(-)
Title: Sparse and Dense Matrix Classes and Methods
Description: A rich hierarchy of sparse and dense matrix classes,
including general, symmetric, triangular, and diagonal matrices
with numeric, logical, or pattern entries. Efficient methods for
operating on such matrices, often wrapping the 'BLAS', 'LAPACK',
and 'SuiteSparse' libraries.
Author: Douglas Bates [aut] ,
Martin Maechler [aut, cre] ,
Mikael Jagan [aut] ,
Timothy A. Davis [ctb] )),
Jens Oehlschlaegel [ctb] ),
Jason Riedy [ctb] and onenormest, Copyright: Regents of the
University of California),
R Core Team [ctb]
Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>
Diff between Matrix versions 1.6-5 dated 2024-01-11 and 1.7-0 dated 2024-03-22
Matrix-1.6-5/Matrix/R/AllClass.R |only Matrix-1.6-5/Matrix/R/AllGeneric.R |only Matrix-1.6-5/Matrix/R/LU.R |only Matrix-1.6-5/Matrix/R/SparseM-conv.R |only Matrix-1.6-5/Matrix/R/abIndex.R |only Matrix-1.6-5/Matrix/R/bind2.R |only Matrix-1.6-5/Matrix/R/chol.R |only Matrix-1.6-5/Matrix/R/denseMatrix.R |only Matrix-1.6-5/Matrix/R/diagMatrix.R |only Matrix-1.6-5/Matrix/R/eigen.R |only Matrix-1.6-5/Matrix/R/graph-conv.R |only Matrix-1.6-5/Matrix/R/indMatrix.R |only Matrix-1.6-5/Matrix/R/products.R |only Matrix-1.6-5/Matrix/R/spModels.R |only Matrix-1.6-5/Matrix/R/sparseMatrix.R |only Matrix-1.6-5/Matrix/R/sparseVector.R |only Matrix-1.6-5/Matrix/build/Matrix.pdf |only Matrix-1.6-5/Matrix/build/stage23.rdb |only Matrix-1.6-5/Matrix/inst/doc/SuiteSparse/AMD.txt |only Matrix-1.6-5/Matrix/inst/doc/SuiteSparse/CHOLMOD.txt |only Matrix-1.6-5/Matrix/inst/doc/SuiteSparse/COLAMD.txt |only Matrix-1.6-5/Matrix/inst/doc/SuiteSparse/SPQR.txt |only Matrix-1.6-5/Matrix/inst/doc/SuiteSparse/SuiteSparse_config.txt |only Matrix-1.6-5/Matrix/man/Cholesky.Rd |only Matrix-1.6-5/Matrix/man/LU-class.Rd |only Matrix-1.6-5/Matrix/man/Schur.Rd |only Matrix-1.6-5/Matrix/man/SparseM-conv.Rd |only Matrix-1.6-5/Matrix/man/Subassign-methods.Rd |only Matrix-1.6-5/Matrix/man/Xtrct-methods.Rd |only Matrix-1.6-5/Matrix/man/atomicVector-class.Rd |only Matrix-1.6-5/Matrix/man/band.Rd |only Matrix-1.6-5/Matrix/man/boolean-matprod.Rd |only Matrix-1.6-5/Matrix/man/cBind.Rd |only Matrix-1.6-5/Matrix/man/chol.Rd |only Matrix-1.6-5/Matrix/man/colSums.Rd |only Matrix-1.6-5/Matrix/man/compMatrix-class.Rd |only Matrix-1.6-5/Matrix/man/dtRMatrix-class-def.Rd |only Matrix-1.6-5/Matrix/man/dtrMatrix-class.Rd |only Matrix-1.6-5/Matrix/man/expand.Rd |only Matrix-1.6-5/Matrix/man/expm.Rd |only Matrix-1.6-5/Matrix/man/facmul.Rd |only Matrix-1.6-5/Matrix/man/forceSymmetric.Rd |only Matrix-1.6-5/Matrix/man/graph2T.Rd |only Matrix-1.6-5/Matrix/man/invPerm.Rd |only 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Matrix-1.6-5/Matrix/src/chm_common.c |only Matrix-1.6-5/Matrix/src/chm_common.h |only Matrix-1.6-5/Matrix/src/cs.c |only Matrix-1.6-5/Matrix/src/cs.h |only Matrix-1.6-5/Matrix/src/dgCMatrix.c |only Matrix-1.6-5/Matrix/src/dgCMatrix.h |only Matrix-1.6-5/Matrix/src/dgeMatrix.c |only Matrix-1.6-5/Matrix/src/dgeMatrix.h |only Matrix-1.6-5/Matrix/src/factorizations.c |only Matrix-1.6-5/Matrix/src/factorizations.h |only Matrix-1.6-5/Matrix/src/products.c |only Matrix-1.6-5/Matrix/src/products.h |only Matrix-1.6-5/Matrix/src/scripts |only Matrix-1.6-5/Matrix/src/sparseVector.c |only Matrix-1.6-5/Matrix/src/sparseVector.h |only Matrix-1.6-5/Matrix/src/t_Csparse_subassign.c |only Matrix-1.6-5/Matrix/src/t_Matrix_rle.c |only Matrix-1.7-0/Matrix/DESCRIPTION | 32 Matrix-1.7-0/Matrix/LICENCE | 20 Matrix-1.7-0/Matrix/MD5 | 1220 +- Matrix-1.7-0/Matrix/NAMESPACE | 69 Matrix-1.7-0/Matrix/R/00_Class.R |only Matrix-1.7-0/Matrix/R/00_Generic.R |only Matrix-1.7-0/Matrix/R/Auxiliaries.R | 4 Matrix-1.7-0/Matrix/R/BunchKaufman.R | 14 Matrix-1.7-0/Matrix/R/Cholesky.R |only Matrix-1.7-0/Matrix/R/HBMM.R | 6 Matrix-1.7-0/Matrix/R/Math.R | 34 Matrix-1.7-0/Matrix/R/Ops.R | 374 Matrix-1.7-0/Matrix/R/Schur.R |only Matrix-1.7-0/Matrix/R/Summary.R | 10 Matrix-1.7-0/Matrix/R/abstract.R |only Matrix-1.7-0/Matrix/R/all.equal.R | 19 Matrix-1.7-0/Matrix/R/cbind2.R |only Matrix-1.7-0/Matrix/R/coerce-SparseM.R |only Matrix-1.7-0/Matrix/R/coerce-graph.R |only Matrix-1.7-0/Matrix/R/coerce.R | 28 Matrix-1.7-0/Matrix/R/colSums.R | 32 Matrix-1.7-0/Matrix/R/dense.R |only Matrix-1.7-0/Matrix/R/determinant.R | 44 Matrix-1.7-0/Matrix/R/diagonal.R |only Matrix-1.7-0/Matrix/R/dim.R | 44 Matrix-1.7-0/Matrix/R/expm.R | 28 Matrix-1.7-0/Matrix/R/image.R | 6 Matrix-1.7-0/Matrix/R/index.R |only Matrix-1.7-0/Matrix/R/is.na.R | 70 Matrix-1.7-0/Matrix/R/kappa.R | 26 Matrix-1.7-0/Matrix/R/kronecker.R | 48 Matrix-1.7-0/Matrix/R/lu.R |only Matrix-1.7-0/Matrix/R/matmult.R |only Matrix-1.7-0/Matrix/R/models.R |only Matrix-1.7-0/Matrix/R/nnzero.R | 14 Matrix-1.7-0/Matrix/R/not.R | 22 Matrix-1.7-0/Matrix/R/objects.R | 21 Matrix-1.7-0/Matrix/R/posdef.R | 48 Matrix-1.7-0/Matrix/R/qr.R | 54 Matrix-1.7-0/Matrix/R/show.R | 59 Matrix-1.7-0/Matrix/R/solve.R | 126 Matrix-1.7-0/Matrix/R/sparse.R |only Matrix-1.7-0/Matrix/R/subassign.R | 172 Matrix-1.7-0/Matrix/R/subscript.R | 43 Matrix-1.7-0/Matrix/R/vector.R |only Matrix-1.7-0/Matrix/R/which.R | 18 Matrix-1.7-0/Matrix/R/zzz.R | 2 Matrix-1.7-0/Matrix/build/partial.rdb |only Matrix-1.7-0/Matrix/build/vignette.rds |binary Matrix-1.7-0/Matrix/cleanup | 6 Matrix-1.7-0/Matrix/inst/NEWS.Rd | 189 Matrix-1.7-0/Matrix/inst/doc/Comparisons.pdf |binary Matrix-1.7-0/Matrix/inst/doc/Design-issues.pdf |binary Matrix-1.7-0/Matrix/inst/doc/Intro2Matrix.pdf |binary Matrix-1.7-0/Matrix/inst/doc/Introduction.pdf |binary Matrix-1.7-0/Matrix/inst/doc/SuiteSparse/AMD |only Matrix-1.7-0/Matrix/inst/doc/SuiteSparse/CAMD |only Matrix-1.7-0/Matrix/inst/doc/SuiteSparse/CCOLAMD |only Matrix-1.7-0/Matrix/inst/doc/SuiteSparse/CHOLMOD |only Matrix-1.7-0/Matrix/inst/doc/SuiteSparse/COLAMD |only Matrix-1.7-0/Matrix/inst/doc/SuiteSparse/CXSparse |only Matrix-1.7-0/Matrix/inst/doc/SuiteSparse/ChangeLog |only Matrix-1.7-0/Matrix/inst/doc/SuiteSparse/LICENSE.txt |only Matrix-1.7-0/Matrix/inst/doc/SuiteSparse/README.md |only Matrix-1.7-0/Matrix/inst/doc/SuiteSparse/SuiteSparse_config |only Matrix-1.7-0/Matrix/inst/doc/sparseModels.pdf |binary Matrix-1.7-0/Matrix/inst/include/Matrix/cholmod.h | 5042 ++++++++-- Matrix-1.7-0/Matrix/inst/include/Matrix/stubs.c | 2 Matrix-1.7-0/Matrix/inst/include/Matrix/version.h | 16 Matrix-1.7-0/Matrix/inst/po/de/LC_MESSAGES/Matrix.mo |binary Matrix-1.7-0/Matrix/inst/po/en@quot/LC_MESSAGES/Matrix.mo |binary Matrix-1.7-0/Matrix/inst/po/en@quot/LC_MESSAGES/R-Matrix.mo |binary Matrix-1.7-0/Matrix/inst/po/fr/LC_MESSAGES/Matrix.mo |binary Matrix-1.7-0/Matrix/inst/po/it/LC_MESSAGES/Matrix.mo |binary Matrix-1.7-0/Matrix/inst/po/ko/LC_MESSAGES/Matrix.mo |binary Matrix-1.7-0/Matrix/inst/po/lt/LC_MESSAGES/Matrix.mo |binary Matrix-1.7-0/Matrix/inst/po/pl/LC_MESSAGES/Matrix.mo |binary Matrix-1.7-0/Matrix/inst/scripts |only Matrix-1.7-0/Matrix/inst/test-tools-Matrix.R | 2 Matrix-1.7-0/Matrix/man/CHMfactor-class.Rd | 4 Matrix-1.7-0/Matrix/man/Cholesky-methods.Rd |only Matrix-1.7-0/Matrix/man/Matrix-class.Rd | 6 Matrix-1.7-0/Matrix/man/Matrix-defunct.Rd | 7 Matrix-1.7-0/Matrix/man/Matrix-deprecated.Rd | 11 Matrix-1.7-0/Matrix/man/Matrix-notyet.Rd |only Matrix-1.7-0/Matrix/man/MatrixFactorization-class.Rd | 3 Matrix-1.7-0/Matrix/man/Schur-methods.Rd |only Matrix-1.7-0/Matrix/man/asUniqueT.Rd |only Matrix-1.7-0/Matrix/man/band-methods.Rd |only Matrix-1.7-0/Matrix/man/boolmatmult-methods.Rd |only Matrix-1.7-0/Matrix/man/cbind2-methods.Rd |only Matrix-1.7-0/Matrix/man/chol-methods.Rd |only Matrix-1.7-0/Matrix/man/coerce-methods-SparseM.Rd |only Matrix-1.7-0/Matrix/man/coerce-methods-graph.Rd |only Matrix-1.7-0/Matrix/man/colSums-methods.Rd |only Matrix-1.7-0/Matrix/man/dMatrix-class.Rd | 1 Matrix-1.7-0/Matrix/man/denseLU-class.Rd |only Matrix-1.7-0/Matrix/man/dpoMatrix-class.Rd | 14 Matrix-1.7-0/Matrix/man/dsRMatrix-class.Rd | 13 Matrix-1.7-0/Matrix/man/dsyMatrix-class.Rd | 2 Matrix-1.7-0/Matrix/man/dtRMatrix-class-sparse.Rd |only Matrix-1.7-0/Matrix/man/dtrMatrix-class-dense.Rd |only Matrix-1.7-0/Matrix/man/expand-methods.Rd |only Matrix-1.7-0/Matrix/man/expm-methods.Rd |only Matrix-1.7-0/Matrix/man/facmul-methods.Rd |only Matrix-1.7-0/Matrix/man/forceSymmetric-methods.Rd |only Matrix-1.7-0/Matrix/man/generalMatrix-class.Rd | 21 Matrix-1.7-0/Matrix/man/index-class.Rd | 24 Matrix-1.7-0/Matrix/man/invertPerm.Rd |only Matrix-1.7-0/Matrix/man/isTriangular-methods.Rd |only Matrix-1.7-0/Matrix/man/lsparseMatrix-class.Rd |only Matrix-1.7-0/Matrix/man/lu-methods.Rd |only Matrix-1.7-0/Matrix/man/matmult-methods.Rd |only Matrix-1.7-0/Matrix/man/nnzero-methods.Rd |only Matrix-1.7-0/Matrix/man/norm-methods.Rd |only Matrix-1.7-0/Matrix/man/nsparseMatrix-class.Rd |only Matrix-1.7-0/Matrix/man/pack-methods.Rd |only Matrix-1.7-0/Matrix/man/packedMatrix-class.Rd | 5 Matrix-1.7-0/Matrix/man/printSpMatrix.Rd | 7 Matrix-1.7-0/Matrix/man/qr-methods.Rd | 6 Matrix-1.7-0/Matrix/man/rcond-methods.Rd |only Matrix-1.7-0/Matrix/man/solve-methods.Rd | 2 Matrix-1.7-0/Matrix/man/sparseQR-class.Rd | 4 Matrix-1.7-0/Matrix/man/sparseVector-class.Rd | 12 Matrix-1.7-0/Matrix/man/subassign-methods.Rd |only Matrix-1.7-0/Matrix/man/subscript-methods.Rd |only Matrix-1.7-0/Matrix/man/symmetricMatrix-class.Rd | 23 Matrix-1.7-0/Matrix/man/symmpart-methods.Rd |only Matrix-1.7-0/Matrix/man/unpackedMatrix-class.Rd | 5 Matrix-1.7-0/Matrix/man/updown-methods.Rd |only Matrix-1.7-0/Matrix/po/Matrix.pot | 491 Matrix-1.7-0/Matrix/po/R-Matrix.pot | 139 Matrix-1.7-0/Matrix/po/R-de.po | 178 Matrix-1.7-0/Matrix/po/R-fr.po | 188 Matrix-1.7-0/Matrix/po/R-it.po | 184 Matrix-1.7-0/Matrix/po/R-ko.po | 180 Matrix-1.7-0/Matrix/po/R-lt.po | 180 Matrix-1.7-0/Matrix/po/R-pl.po | 258 Matrix-1.7-0/Matrix/po/de.po | 513 - Matrix-1.7-0/Matrix/po/fr.po | 513 - Matrix-1.7-0/Matrix/po/it.po | 513 - Matrix-1.7-0/Matrix/po/ko.po | 509 - Matrix-1.7-0/Matrix/po/lt.po | 513 - Matrix-1.7-0/Matrix/po/pl.po | 581 - Matrix-1.7-0/Matrix/src/Csparse.c | 153 Matrix-1.7-0/Matrix/src/Csparse.h | 13 Matrix-1.7-0/Matrix/src/Makevars | 77 Matrix-1.7-0/Matrix/src/Mdefines.h | 6 Matrix-1.7-0/Matrix/src/Msymbols.h |only Matrix-1.7-0/Matrix/src/SuiteSparse |only Matrix-1.7-0/Matrix/src/cholmod-common.c |only Matrix-1.7-0/Matrix/src/cholmod-common.h |only Matrix-1.7-0/Matrix/src/cholmod-etc.c | 7 Matrix-1.7-0/Matrix/src/cholmod-etc.h | 4 Matrix-1.7-0/Matrix/src/coerce.c | 54 Matrix-1.7-0/Matrix/src/cs-etc.h | 2 Matrix-1.7-0/Matrix/src/dense.c | 13 Matrix-1.7-0/Matrix/src/expm.c |only Matrix-1.7-0/Matrix/src/expm.h |only Matrix-1.7-0/Matrix/src/factor.c |only Matrix-1.7-0/Matrix/src/factor.h |only Matrix-1.7-0/Matrix/src/init.c | 54 Matrix-1.7-0/Matrix/src/matmult.c |only Matrix-1.7-0/Matrix/src/matmult.h |only Matrix-1.7-0/Matrix/src/objects.c | 10 Matrix-1.7-0/Matrix/src/solve.c | 8 Matrix-1.7-0/Matrix/src/subassign.c |only Matrix-1.7-0/Matrix/src/subassign.h |only Matrix-1.7-0/Matrix/src/t_rle.c |only Matrix-1.7-0/Matrix/src/t_subassign.c |only Matrix-1.7-0/Matrix/src/utils-R.c | 8 Matrix-1.7-0/Matrix/src/utils-R.h | 5 Matrix-1.7-0/Matrix/src/validity.c | 281 Matrix-1.7-0/Matrix/src/validity.h | 5 Matrix-1.7-0/Matrix/src/vector.c |only Matrix-1.7-0/Matrix/src/vector.h |only Matrix-1.7-0/Matrix/src/version.h | 16 Matrix-1.7-0/Matrix/tests/Class+Meth.R | 12 Matrix-1.7-0/Matrix/tests/indexing.R | 8 Matrix-1.7-0/Matrix/tests/indexing.Rout.save | 44 Matrix-1.7-0/Matrix/tests/packed-unpacked.R | 10 Matrix-1.7-0/Matrix/tests/validObj.R | 2 266 files changed, 8993 insertions(+), 4873 deletions(-)
Title: Serializable Representations
Description: String and binary representations of objects for several formats /
mime types.
Author: Philipp Angerer [aut, cre] ,
Thomas Kluyver [aut],
Jan Schulz [aut],
abielr [ctb],
Denilson Figueiredo de Sa [ctb],
Jim Hester [ctb],
karldw [ctb],
Dave Foster [ctb],
Carson Sievert [ctb]
Maintainer: Philipp Angerer <phil.angerer@gmail.com>
Diff between repr versions 1.1.6 dated 2023-01-26 and 1.1.7 dated 2024-03-22
DESCRIPTION | 8 +-- MD5 | 16 +++---- R/package.r | 3 - R/repr_htmlwidget.r | 63 ++++++++++++++++++------------- R/repr_matrix_df.r | 25 +++++++++++- man/repr-package.Rd | 20 +++++++++ tests/testthat/test_array_manipulation.r | 4 - tests/testthat/test_escaping.r | 2 tests/testthat/test_repr_htmlwidget.r | 8 +-- 9 files changed, 100 insertions(+), 49 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb]
,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between insight versions 0.19.9 dated 2024-03-15 and 0.19.10 dated 2024-03-22
DESCRIPTION | 6 MD5 | 56 ++++---- NEWS.md | 11 + R/clean_names.R | 58 +++++--- R/helper_functions.R | 6 R/standardize_names.R | 45 +++--- R/utils_get_data.R | 24 +-- inst/doc/display.html | 214 ++++++++++++++++---------------- inst/doc/export.html | 2 inst/doc/insight.html | 2 man/standardize_column_order.Rd | 11 - man/standardize_names.Rd | 29 +--- tests/testthat/test-GLMMadaptive.R | 25 +-- tests/testthat/test-brms.R | 1 tests/testthat/test-brms_aterms.R | 1 tests/testthat/test-clean_names.R | 32 ++++ tests/testthat/test-cpglmm.R | 3 tests/testthat/test-format_table.R | 1 tests/testthat/test-get_data.R | 17 ++ tests/testthat/test-get_datagrid.R | 77 +++++------ tests/testthat/test-get_loglikelihood.R | 2 tests/testthat/test-get_predicted.R | 4 tests/testthat/test-get_variance.R | 69 +++++----- tests/testthat/test-glmmTMB.R | 11 + tests/testthat/test-is_converged.R | 1 tests/testthat/test-model_data.R | 1 tests/testthat/test-model_info.R | 1 tests/testthat/test-null_model.R | 1 tests/testthat/test-spatial.R | 1 29 files changed, 404 insertions(+), 308 deletions(-)