Title: Interface to 'NetCDF' Datasets
Description: An interface to the 'NetCDF' file formats designed by Unidata
for efficient storage of array-oriented scientific data and descriptions.
Most capabilities of 'NetCDF' version 4 are supported. Optional conversions
of time units are enabled by 'UDUNITS' version 2, also from Unidata.
Author: Pavel Michna [aut],
Milton Woods [aut, cre]
Maintainer: Milton Woods <miltonjwoods@gmail.com>
Diff between RNetCDF versions 2.9-1 dated 2024-01-09 and 2.9-2 dated 2024-03-24
DESCRIPTION | 8 ++++---- INSTALL | 4 ++-- LICENSE | 2 +- MD5 | 48 ++++++++++++++++++++++++------------------------ NEWS | 3 +++ R/RNetCDF.R | 2 +- R/config.R.in | 2 +- configure | 18 +++++++++--------- configure.ac | 2 +- configure.win | 7 ++++++- src/RNetCDF.h | 4 ++-- src/attribute.c | 4 ++-- src/common.c | 4 ++-- src/common.h | 4 ++-- src/convert.c | 4 ++-- src/convert.h | 4 ++-- src/dataset.c | 4 ++-- src/dimension.c | 4 ++-- src/group.c | 4 ++-- src/init.c | 4 ++-- src/type.c | 4 ++-- src/udunits.c | 4 ++-- src/variable.c | 4 ++-- tests/RNetCDF-test.R | 4 ++-- tools/convert.m4 | 4 ++-- 25 files changed, 82 insertions(+), 74 deletions(-)
Title: Logging Setup for the 'teal' Family of Packages
Description: Utilizing the 'logger' framework to record events within a
package, specific to 'teal' family of packages. Supports logging
namespaces, hierarchical logging, various log destinations,
vectorization, and more.
Author: Dawid Kaledkowski [aut, cre],
Konrad Pagacz [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>
Diff between teal.logger versions 0.1.3 dated 2023-09-08 and 0.2.0 dated 2024-03-24
DESCRIPTION | 28 ++++++++++++------ MD5 | 34 +++++++++++++--------- NAMESPACE | 1 NEWS.md | 6 ++++ R/register_handlers.R |only R/register_logger.R | 18 ++++++------ R/utils.R | 12 ++++++++ R/zzz.R | 4 ++ README.md | 12 +++----- build/vignette.rds |binary inst/doc/teal-logger.Rmd | 10 +++--- inst/doc/teal-logger.html | 30 ++++++++++---------- man/get_val.Rd |only man/register_handlers.Rd |only man/register_logger.Rd | 2 - man/teal.logger-package.Rd | 9 ++++++ tests/testthat/setup-options.R |only tests/testthat/test-register_handlers.R |only tests/testthat/test-register_logger.R | 48 ++++++++++++++++++-------------- tests/testthat/test-utils.R |only vignettes/teal-logger.Rmd | 10 +++--- 21 files changed, 138 insertions(+), 86 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to
encode spatial vector data. Binds to 'GDAL' for reading and writing
data, to 'GEOS' for geometrical operations, and to 'PROJ' for
projection conversions and datum transformations. Uses by default the 's2'
package for spherical geometry operations on ellipsoidal (long/lat) coordinates.
Author: Edzer Pebesma [aut, cre] ,
Roger Bivand [ctb] ,
Etienne Racine [ctb],
Michael Sumner [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb] ,
Kirill Mueller [ctb],
Thomas Lin Pedersen [ctb],
Dan Baston [c [...truncated...]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 1.0-15 dated 2023-12-18 and 1.0-16 dated 2024-03-24
sf-1.0-15/sf/tests/testthat/s2.R |only sf-1.0-15/sf/tests/testthat/test_bbox.R |only sf-1.0-15/sf/tests/testthat/test_collection_extract.R |only sf-1.0-15/sf/tests/testthat/test_crs.R |only sf-1.0-15/sf/tests/testthat/test_gdal.R |only sf-1.0-15/sf/tests/testthat/test_geos.R |only sf-1.0-15/sf/tests/testthat/test_plot.R |only sf-1.0-15/sf/tests/testthat/test_postgis_ODBC.R |only sf-1.0-15/sf/tests/testthat/test_postgis_RPostgreSQL.R |only sf-1.0-15/sf/tests/testthat/test_postgis_RPostgres.R |only sf-1.0-15/sf/tests/testthat/test_project.R |only sf-1.0-15/sf/tests/testthat/test_read.R |only sf-1.0-15/sf/tests/testthat/test_sample.R |only sf-1.0-15/sf/tests/testthat/test_sf.R |only sf-1.0-15/sf/tests/testthat/test_sfc.R |only sf-1.0-15/sf/tests/testthat/test_sfg.R |only sf-1.0-15/sf/tests/testthat/test_sp.R |only sf-1.0-15/sf/tests/testthat/test_st_cast.R |only sf-1.0-15/sf/tests/testthat/test_tidy.R |only sf-1.0-15/sf/tests/testthat/test_tm.R |only sf-1.0-15/sf/tests/testthat/test_valid.R |only sf-1.0-15/sf/tests/testthat/test_vctrs.R |only sf-1.0-15/sf/tests/testthat/test_wkb.R |only sf-1.0-15/sf/tests/testthat/test_wkt.R |only sf-1.0-15/sf/tests/testthat/test_write.R |only sf-1.0-15/sf/tests/testthat/test_zm_range.R |only sf-1.0-16/sf/DESCRIPTION | 34 + sf-1.0-16/sf/LICENSE | 2 sf-1.0-16/sf/MD5 | 298 ++++++++--------- sf-1.0-16/sf/NAMESPACE | 5 sf-1.0-16/sf/NEWS.md | 30 + sf-1.0-16/sf/R/RcppExports.R | 28 - 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Title: Bayesian Ordination and Regression AnaLysis
Description: Bayesian approaches for analyzing multivariate data in ecology. Estimation is performed using Markov Chain Monte Carlo (MCMC) methods via Three. JAGS types of models may be fitted: 1) With explanatory variables only, boral fits independent column Generalized Linear Models (GLMs) to each column of the response matrix; 2) With latent variables only, boral fits a purely latent variable model for model-based unconstrained ordination; 3) With explanatory and latent variables, boral fits correlated column GLMs with latent variables to account for any residual correlation between the columns of the response matrix.
Author: Francis K.C. Hui [aut, cre],
Wade Blanchard [aut]
Maintainer: Francis K.C. Hui <fhui28@gmail.com>
Diff between boral versions 2.0.1 dated 2024-03-19 and 2.0.2 dated 2024-03-24
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/varpart.R | 2 +- build/boral.pdf |binary build/partial.rdb |binary 5 files changed, 9 insertions(+), 9 deletions(-)
Title: Bayesian Network Meta-Analysis with Missing Participants
Description: A comprehensive suite of functions to perform and visualise
pairwise and network meta-analysis with aggregate binary or continuous
missing participant outcome data. The package covers core Bayesian one-stage
models implemented in a systematic review with multiple interventions,
including fixed-effect and random-effects network meta-analysis,
meta-regression, evaluation of the consistency assumption via the
node-splitting approach and the unrelated mean effects model, and
sensitivity analysis. Missing participant outcome data are addressed in all
models of the package. The robustness to primary analysis results can
also be investigated using a novel intuitive index. Methods to evaluate the
transitivity assumption quantitatively are provided. The package also offers
a rich, user-friendly visualisation toolkit that aids in appraising and
interpreting the results thoroughly and preparing the manuscript for journal
submission. The visualisation tools comprise the network plot, forest plots, [...truncated...]
Author: Loukia Spineli [aut, cre],
Chrysostomos Kalyvas [ctb],
Katerina Papadimitropoulou [ctb]
Maintainer: Loukia Spineli <Spineli.Loukia@mh-hannover.de>
Diff between rnmamod versions 0.3.0 dated 2022-11-01 and 0.4.0 dated 2024-03-24
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rnmamod-0.4.0/rnmamod/man/league_table_absolute_user.Rd | 284 +- rnmamod-0.4.0/rnmamod/man/mcmc_diagnostics.Rd | 65 rnmamod-0.4.0/rnmamod/man/metareg_plot.Rd | 6 rnmamod-0.4.0/rnmamod/man/miss_characteristics.Rd |only rnmamod-0.4.0/rnmamod/man/netplot.Rd | 236 +- rnmamod-0.4.0/rnmamod/man/nodesplit_plot.Rd | 4 rnmamod-0.4.0/rnmamod/man/rankosucra_plot.Rd | 11 rnmamod-0.4.0/rnmamod/man/rnmamod-package.Rd | 53 rnmamod-0.4.0/rnmamod/man/robustness_index_user.Rd | 275 +- rnmamod-0.4.0/rnmamod/man/run_metareg.Rd | 17 rnmamod-0.4.0/rnmamod/man/run_model.Rd | 20 rnmamod-0.4.0/rnmamod/man/run_nodesplit.Rd | 15 rnmamod-0.4.0/rnmamod/man/run_sensitivity.Rd | 17 rnmamod-0.4.0/rnmamod/man/run_series_meta.Rd | 12 rnmamod-0.4.0/rnmamod/man/run_ume.Rd | 17 rnmamod-0.4.0/rnmamod/man/scatterplots_dev.Rd | 2 rnmamod-0.4.0/rnmamod/man/series_meta_plot.Rd | 2 rnmamod-0.4.0/rnmamod/man/taylor_continuous.Rd | 10 rnmamod-0.4.0/rnmamod/man/taylor_imor.Rd | 10 rnmamod-0.4.0/rnmamod/man/ume_plot.Rd | 4 rnmamod-0.4.0/rnmamod/vignettes/network_description.Rmd | 30 rnmamod-0.4.0/rnmamod/vignettes/perform_network_metaanalysis.Rmd | 2 109 files changed, 3587 insertions(+), 2339 deletions(-)
Title: Decision Analysis Modelling Package with Parameters Estimation
Ability from Individual Patient Level Data
Description: A collection of functions to construct Markov model for model-based
cost-effectiveness analysis. This includes creating Markov model (both time
homogenous and time dependent models), decision analysis, sensitivity
analysis (deterministic and probabilistic). The package allows estimation
of parameters for the Markov model from a given individual patient level
data, provided the data file follows some standard data entry rules.
Author: Sheeja Manchira Krishnan [aut, cre]
Maintainer: Sheeja Manchira Krishnan <sheejamk@gmail.com>
Diff between packDAMipd versions 0.2.2 dated 2021-03-03 and 1.1.0 dated 2024-03-24
packDAMipd-0.2.2/packDAMipd/R/3c_costing_medication_functions.R |only packDAMipd-0.2.2/packDAMipd/data/adl_scoring.rda |only packDAMipd-0.2.2/packDAMipd/data/blank.rda |only packDAMipd-0.2.2/packDAMipd/data/cost_data.rda |only packDAMipd-0.2.2/packDAMipd/data/table_param.rda |only packDAMipd-0.2.2/packDAMipd/data/trace_data.rda |only packDAMipd-0.2.2/packDAMipd/data/trial_data.rda |only packDAMipd-0.2.2/packDAMipd/data/utility_data.rda |only packDAMipd-0.2.2/packDAMipd/inst/doc/Deterministic_sensitivity_analysis.R |only packDAMipd-0.2.2/packDAMipd/inst/doc/Deterministic_sensitivity_analysis.Rmd |only packDAMipd-0.2.2/packDAMipd/inst/doc/Deterministic_sensitivity_analysis.html |only packDAMipd-0.2.2/packDAMipd/inst/doc/Probabilstic_sensitivity_analysis.R |only packDAMipd-0.2.2/packDAMipd/inst/doc/Probabilstic_sensitivity_analysis.Rmd |only packDAMipd-0.2.2/packDAMipd/inst/doc/Probabilstic_sensitivity_analysis.html |only packDAMipd-0.2.2/packDAMipd/inst/doc/Sick_sicker_age_dependent.R |only packDAMipd-0.2.2/packDAMipd/inst/doc/Sick_sicker_age_dependent.Rmd |only packDAMipd-0.2.2/packDAMipd/inst/doc/Sick_sicker_age_dependent.html |only packDAMipd-0.2.2/packDAMipd/inst/doc/Simple_sick_sicker.R |only packDAMipd-0.2.2/packDAMipd/inst/doc/Simple_sick_sicker.Rmd |only packDAMipd-0.2.2/packDAMipd/inst/doc/Simple_sick_sicker.html |only packDAMipd-0.2.2/packDAMipd/inst/doc/cycle_dependent.R |only packDAMipd-0.2.2/packDAMipd/inst/doc/cycle_dependent.Rmd |only packDAMipd-0.2.2/packDAMipd/inst/doc/cycle_dependent.html |only packDAMipd-0.2.2/packDAMipd/inst/extdata/National_schedule_of_NHS_costs_2019_error.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med_brand.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med_brand_bottlevol_notmatching.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med_brand_brandcolname_error.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med_brand_errorbrand.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med_brand_nodosage.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med_brand_nomatchingdose.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med_brand_notcostedperbottle.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med_brand_nounitcostcol.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med_brand_sizecol_error.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med_brand_unitnotidentify.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med_formcolname_error.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med_namecolname_error.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/average_unit_costs_med_nounitcost.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/desktop.ini |only packDAMipd-0.2.2/packDAMipd/inst/extdata/patient_adm_cost_NEL.xlsx |only packDAMipd-0.2.2/packDAMipd/inst/extdata/resource_use_hc_ip_nocol_numuse.csv |only packDAMipd-0.2.2/packDAMipd/inst/extdata/table_param_nostrategycol.csv |only packDAMipd-0.2.2/packDAMipd/man/adl_scoring.Rd |only packDAMipd-0.2.2/packDAMipd/man/blank.Rd |only packDAMipd-0.2.2/packDAMipd/man/cost_data.Rd |only packDAMipd-0.2.2/packDAMipd/man/get_col_multiple_pattern.Rd |only packDAMipd-0.2.2/packDAMipd/man/plot_ceac.Rd |only packDAMipd-0.2.2/packDAMipd/man/table_param.Rd |only packDAMipd-0.2.2/packDAMipd/man/trace_data.Rd |only packDAMipd-0.2.2/packDAMipd/man/trial_data.Rd |only packDAMipd-0.2.2/packDAMipd/man/utility_data.Rd |only packDAMipd-0.2.2/packDAMipd/tests/testthat.R |only packDAMipd-0.2.2/packDAMipd/tests/testthat/test-3c_costing_medication_functions.R |only packDAMipd-0.2.2/packDAMipd/vignettes/Deterministic_sensitivity_analysis.Rmd |only packDAMipd-0.2.2/packDAMipd/vignettes/Probabilstic_sensitivity_analysis.Rmd |only packDAMipd-0.2.2/packDAMipd/vignettes/Sick_sicker_age_dependent.Rmd |only packDAMipd-0.2.2/packDAMipd/vignettes/Simple_sick_sicker.Rmd |only packDAMipd-0.2.2/packDAMipd/vignettes/cycle_dependent.Rmd |only packDAMipd-1.1.0/packDAMipd/DESCRIPTION | 20 packDAMipd-1.1.0/packDAMipd/MD5 | 335 ++++++---- packDAMipd-1.1.0/packDAMipd/NAMESPACE | 31 packDAMipd-1.1.0/packDAMipd/R/1_model_functions.R | 48 - packDAMipd-1.1.0/packDAMipd/R/1b_model_tunnelstate_functions.R |only packDAMipd-1.1.0/packDAMipd/R/2a_parameter_estimation_functions.R | 38 - packDAMipd-1.1.0/packDAMipd/R/2b_parameter_estimation_survival_functions.R | 13 packDAMipd-1.1.0/packDAMipd/R/3b_outcome_analysis_functions.R | 282 +++++++- packDAMipd-1.1.0/packDAMipd/R/3c_costing_medication_liquid_functions.R |only packDAMipd-1.1.0/packDAMipd/R/3c_costing_medication_patches_functions.R |only packDAMipd-1.1.0/packDAMipd/R/3c_costing_medication_tablets_functions.R |only packDAMipd-1.1.0/packDAMipd/R/3c_costing_opioid_liquids_averageMED_functions.R |only packDAMipd-1.1.0/packDAMipd/R/3c_costing_opioid_patches_averageMED_functions.R |only packDAMipd-1.1.0/packDAMipd/R/3c_costing_opioid_tablets_MED_functions.R |only packDAMipd-1.1.0/packDAMipd/R/3c_costing_opioid_tablets_averageMED_functions.R |only packDAMipd-1.1.0/packDAMipd/R/3c_costing_resource_use_functions.R | 176 +++-- packDAMipd-1.1.0/packDAMipd/R/3d_decision_analysis_functions.R | 17 packDAMipd-1.1.0/packDAMipd/R/4a_deterministic_sensitivity_analysis_functions.R | 93 +- packDAMipd-1.1.0/packDAMipd/R/4b_probabilistic_sensitivity_analysis_functions.R | 67 +- packDAMipd-1.1.0/packDAMipd/R/data.R | 19 packDAMipd-1.1.0/packDAMipd/R/general_help_functions.R |only packDAMipd-1.1.0/packDAMipd/R/globals.R | 8 packDAMipd-1.1.0/packDAMipd/R/help_cost_analysis_functions.R | 124 ++- packDAMipd-1.1.0/packDAMipd/R/help_model_functions.R | 2 packDAMipd-1.1.0/packDAMipd/R/help_parameter_estimation_functions.R | 28 packDAMipd-1.1.0/packDAMipd/R/help_parameter_estimation_survival.R | 21 packDAMipd-1.1.0/packDAMipd/R/sysdata.rda |only packDAMipd-1.1.0/packDAMipd/README.md | 24 packDAMipd-1.1.0/packDAMipd/build/vignette.rds |binary packDAMipd-1.1.0/packDAMipd/data/adl_scoring.df.rda |only packDAMipd-1.1.0/packDAMipd/data/blank.df.rda |only packDAMipd-1.1.0/packDAMipd/data/cost_data.df.rda |only packDAMipd-1.1.0/packDAMipd/data/promis3a_scoring.df.rda |only packDAMipd-1.1.0/packDAMipd/data/table_param.df.rda |only packDAMipd-1.1.0/packDAMipd/data/trace_data.df.rda |only packDAMipd-1.1.0/packDAMipd/data/trial_data.df.rda |only packDAMipd-1.1.0/packDAMipd/data/utility_data.df.rda |only packDAMipd-1.1.0/packDAMipd/inst/doc/Cycledep.R |only packDAMipd-1.1.0/packDAMipd/inst/doc/Cycledep.Rmd |only packDAMipd-1.1.0/packDAMipd/inst/doc/Cycledep.html |only 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|binary packDAMipd-1.1.0/packDAMipd/inst/extdata/Med_calc_noconvfactorcol.xlsx |binary packDAMipd-1.1.0/packDAMipd/inst/extdata/Med_calc_nodrugcol.xlsx |binary packDAMipd-1.1.0/packDAMipd/inst/extdata/Med_calc_noformcol.xlsx |binary packDAMipd-1.1.0/packDAMipd/inst/extdata/Med_calc_nounitcol.xlsx |binary packDAMipd-1.1.0/packDAMipd/inst/extdata/Med_calc_patchunitwrong.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/Med_calc_tabletunitwrong.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/Med_calc_testNA.xlsx |binary packDAMipd-1.1.0/packDAMipd/inst/extdata/Med_calc_unit_notright.xlsx |binary packDAMipd-1.1.0/packDAMipd/inst/extdata/Medications_unit_costs_all.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/National_schedule_of_NHS_costs_2019.csv | 2 packDAMipd-1.1.0/packDAMipd/inst/extdata/National_schedule_of_NHS_costs_2019_error.xlsx |binary packDAMipd-1.1.0/packDAMipd/inst/extdata/blank.csv |only packDAMipd-1.1.0/packDAMipd/inst/extdata/costs_resource_use_unitexpressed_notright.csv | 2 packDAMipd-1.1.0/packDAMipd/inst/extdata/med_liquids_timepoints.csv |only packDAMipd-1.1.0/packDAMipd/inst/extdata/med_patches_timepoints.csv |only packDAMipd-1.1.0/packDAMipd/inst/extdata/med_tablets_timepoints.csv |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication.xlsx |binary packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_all.xlsx |binary packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_all_2.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_all_brandNull.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_all_strengthnotgiven.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_all_test.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_all_test_error.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_all_unitnotseparate.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_brandmissing_ipd.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_costs_all_bottlevol_notmatching.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_costs_all_brand_nounitcostcol.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_costs_all_nomatchingdose.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_costs_all_notcostedperbottle.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_incorrect_brand.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_liq.xlsx |binary packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_liq_brand_empty.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_liq_emptyrow.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medication_liq_strength_unitdiff.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medicaton_costs_all.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medicaton_costs_all_brandcolname_error.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medicaton_costs_all_errorbrand.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medicaton_costs_all_formcol_nameerror.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medicaton_costs_all_namecol_nameerror.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medicaton_costs_all_nobrandcol.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medicaton_costs_all_nodosage.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medicaton_costs_all_nosizecol.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medicaton_costs_all_nounitcost.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medicaton_costs_all_preparation_unitwrong.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medicaton_costs_all_sizecol_error.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/medicaton_costs_all_unitdiff.xlsx |only packDAMipd-1.1.0/packDAMipd/inst/extdata/test.xlsx |binary packDAMipd-1.1.0/packDAMipd/man/add_entries_sameuse_timepoint.Rd |only packDAMipd-1.1.0/packDAMipd/man/adl_scoring.df.Rd |only packDAMipd-1.1.0/packDAMipd/man/blank.df.Rd |only packDAMipd-1.1.0/packDAMipd/man/check_equal_columncontents_NAomitted.Rd |only packDAMipd-1.1.0/packDAMipd/man/check_equal_sumcolumncontents_NAomitted.Rd |only packDAMipd-1.1.0/packDAMipd/man/convert_wtpervoldiff_basis.Rd |only packDAMipd-1.1.0/packDAMipd/man/cost_data.df.Rd |only packDAMipd-1.1.0/packDAMipd/man/costing_AandE_admission.Rd | 146 ++-- packDAMipd-1.1.0/packDAMipd/man/costing_inpatient_daycase_admission.Rd | 136 ++-- packDAMipd-1.1.0/packDAMipd/man/costing_opioid_liquids_averageMED_long.Rd |only packDAMipd-1.1.0/packDAMipd/man/costing_opioid_liquids_averageMED_wide.Rd |only packDAMipd-1.1.0/packDAMipd/man/costing_opioid_patches_averageMED_long.Rd |only packDAMipd-1.1.0/packDAMipd/man/costing_opioid_patches_averageMED_wide.Rd |only packDAMipd-1.1.0/packDAMipd/man/costing_opioid_tablets_MED_wide.Rd |only packDAMipd-1.1.0/packDAMipd/man/costing_opioid_tablets_averageMED_long.Rd |only packDAMipd-1.1.0/packDAMipd/man/costing_opioid_tablets_averageMED_wide.Rd |only packDAMipd-1.1.0/packDAMipd/man/costing_resource_use.Rd | 2 packDAMipd-1.1.0/packDAMipd/man/create_shorttable_from_gtsummary_compare_twogroups_timpoints.Rd |only packDAMipd-1.1.0/packDAMipd/man/create_table_from_gtsummary_compare_twogroups.Rd |only packDAMipd-1.1.0/packDAMipd/man/define_parameters_sens_anal.Rd | 4 packDAMipd-1.1.0/packDAMipd/man/encode_codes_data.Rd | 58 - packDAMipd-1.1.0/packDAMipd/man/find_rowwise_sum_multiplecol.Rd |only packDAMipd-1.1.0/packDAMipd/man/form_expression_mixed_model_lme4.Rd | 146 ++-- packDAMipd-1.1.0/packDAMipd/man/generate_wt_time_units.Rd | 34 - packDAMipd-1.1.0/packDAMipd/man/generate_wt_vol_units.Rd | 34 - packDAMipd-1.1.0/packDAMipd/man/get_cost_AandE_code.Rd | 92 +- packDAMipd-1.1.0/packDAMipd/man/get_cost_AandE_description.Rd | 92 +- packDAMipd-1.1.0/packDAMipd/man/get_cost_ip_dc_description.Rd | 80 +- packDAMipd-1.1.0/packDAMipd/man/get_cost_ip_dc_hrg.Rd | 78 +- packDAMipd-1.1.0/packDAMipd/man/get_doses_combination.Rd |only packDAMipd-1.1.0/packDAMipd/man/get_doses_combination_units.Rd |only packDAMipd-1.1.0/packDAMipd/man/get_single_col_multiple_pattern.Rd |only packDAMipd-1.1.0/packDAMipd/man/get_slope_intercept.Rd | 62 - packDAMipd-1.1.0/packDAMipd/man/get_slope_intercept_cross.Rd | 70 +- packDAMipd-1.1.0/packDAMipd/man/get_slope_intercept_nested.Rd | 70 +- packDAMipd-1.1.0/packDAMipd/man/init_trace_sjtime.Rd |only packDAMipd-1.1.0/packDAMipd/man/map_resource_use_categories.Rd |only packDAMipd-1.1.0/packDAMipd/man/markov_model_sojourntime.Rd |only packDAMipd-1.1.0/packDAMipd/man/microcosting_liquids_long.Rd | 250 +++---- packDAMipd-1.1.0/packDAMipd/man/microcosting_liquids_wide.Rd | 232 +++--- packDAMipd-1.1.0/packDAMipd/man/microcosting_patches_long.Rd | 220 +++--- packDAMipd-1.1.0/packDAMipd/man/microcosting_patches_wide.Rd | 230 +++--- packDAMipd-1.1.0/packDAMipd/man/microcosting_tablets_long.Rd | 212 +++--- packDAMipd-1.1.0/packDAMipd/man/microcosting_tablets_wide.Rd | 212 +++--- packDAMipd-1.1.0/packDAMipd/man/plot_ceac_psa.Rd |only packDAMipd-1.1.0/packDAMipd/man/plot_histogram_onetimepoint_twogroups.Rd |only packDAMipd-1.1.0/packDAMipd/man/plot_meanSE_longitudinal_twogroups.Rd |only packDAMipd-1.1.0/packDAMipd/man/plot_nmb_lambda.Rd |only packDAMipd-1.1.0/packDAMipd/man/prediction_regression.Rd | 10 packDAMipd-1.1.0/packDAMipd/man/promis3a_scoring.df.Rd |only packDAMipd-1.1.0/packDAMipd/man/return0_if_not_null_na.Rd | 50 - packDAMipd-1.1.0/packDAMipd/man/return_equal_liststring_col.Rd | 56 - packDAMipd-1.1.0/packDAMipd/man/return_equal_liststring_listcol.Rd | 58 - packDAMipd-1.1.0/packDAMipd/man/return_equal_str_col.Rd | 56 - packDAMipd-1.1.0/packDAMipd/man/table_param.df.Rd |only packDAMipd-1.1.0/packDAMipd/man/trace_data.df.Rd |only packDAMipd-1.1.0/packDAMipd/man/trial_data.df.Rd |only packDAMipd-1.1.0/packDAMipd/man/utility_data.df.Rd |only packDAMipd-1.1.0/packDAMipd/man/value_Shows_IPD.Rd | 4 packDAMipd-1.1.0/packDAMipd/man/value_eq5d3L_IPD.Rd | 54 - packDAMipd-1.1.0/packDAMipd/man/value_promis3a_scores_IPD.Rd |only packDAMipd-1.1.0/packDAMipd/tests/testthat/test-1_model_functions.R | 9 packDAMipd-1.1.0/packDAMipd/tests/testthat/test-2a_parameter_estimation_functions.R | 1 packDAMipd-1.1.0/packDAMipd/tests/testthat/test-3b_outcome_analysis_functions.R | 197 ++++- packDAMipd-1.1.0/packDAMipd/tests/testthat/test-3c_costing_medication_liquid_functions.R |only packDAMipd-1.1.0/packDAMipd/tests/testthat/test-3c_costing_medication_patches_functions.R |only packDAMipd-1.1.0/packDAMipd/tests/testthat/test-3c_costing_medication_tablets_functions.R |only packDAMipd-1.1.0/packDAMipd/tests/testthat/test-3c_costing_opiod_tablet_MED_functions.R |only packDAMipd-1.1.0/packDAMipd/tests/testthat/test-3c_costing_opioid_liquids_averageMED_functions.R |only packDAMipd-1.1.0/packDAMipd/tests/testthat/test-3c_costing_opioid_patches_averageMED_functions.R |only packDAMipd-1.1.0/packDAMipd/tests/testthat/test-3c_costing_opioid_tablets_averageMED_functions.R |only packDAMipd-1.1.0/packDAMipd/tests/testthat/test-3c_costing_resource_use_functions.R | 8 packDAMipd-1.1.0/packDAMipd/tests/testthat/test-3d_decision_analysis_functions.R | 8 packDAMipd-1.1.0/packDAMipd/tests/testthat/test-4a_deterministic_sensitivity_analysis_functions.R | 2 packDAMipd-1.1.0/packDAMipd/tests/testthat/test-4b_probabilistic_sensitivity_analysis_functions.R | 34 + packDAMipd-1.1.0/packDAMipd/tests/testthat/test-help_cost_analysis_functions.R | 31 packDAMipd-1.1.0/packDAMipd/tests/testthat/test-help_parameter_estimation_functions.R | 28 packDAMipd-1.1.0/packDAMipd/vignettes/Cycledep.Rmd |only packDAMipd-1.1.0/packDAMipd/vignettes/Sicksicker.Rmd |only packDAMipd-1.1.0/packDAMipd/vignettes/Sicksicker_age.Rmd |only packDAMipd-1.1.0/packDAMipd/vignettes/cost.csv |only packDAMipd-1.1.0/packDAMipd/vignettes/dsa.Rmd |only packDAMipd-1.1.0/packDAMipd/vignettes/psa.Rmd |only packDAMipd-1.1.0/packDAMipd/vignettes/psa_2.Rmd |only packDAMipd-1.1.0/packDAMipd/vignettes/util.csv |only 248 files changed, 2529 insertions(+), 1887 deletions(-)
Title: An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Description: Extends the functionality of 'ggplot2', providing the capability
to plot ternary diagrams for (subset of) the 'ggplot2' geometries. Additionally,
'ggtern' has implemented several NEW geometries which are unavailable to the
standard 'ggplot2' release. For further examples and documentation, please
proceed to the 'ggtern' website.
Author: Nicholas Hamilton [aut, cre]
Maintainer: Nicholas Hamilton <nick@ggtern.com>
Diff between ggtern versions 3.4.2 dated 2023-06-06 and 3.5.0 dated 2024-03-24
DESCRIPTION | 16 - MD5 | 46 +- NAMESPACE | 9 NEWS | 4 R/calc-tern-tlr2xy.R | 7 R/coord-tern.R | 92 +++-- R/geom-label-viewport.R | 8 R/geom-mask.R | 4 R/gg-internal.R | 19 + R/plot-build.R | 668 ++++++++++++++++++++++++++++--------------- R/plot.R | 32 +- R/scales-tern.R | 22 - R/stat-interpolate-methods.R | 4 R/theme-defaults.R | 2 R/theme-elements.R | 6 R/utilities.R | 14 build/partial.rdb |binary man/ggplot.Rd | 1 man/ggplot_build.Rd | 2 man/ggplot_gtable.Rd | 2 man/scale_X_continuous.Rd | 6 man/theme_complete.Rd | 2 man/theme_elements.Rd | 2 man/undocumented.Rd | 18 - 24 files changed, 644 insertions(+), 342 deletions(-)
Title: Ecological Inference of RxC Tables by Overdispersed-Multinomial
Models
Description: Estimates RxC (R by C) vote transfer matrices (ecological contingency tables) from aggregate data using the model described in Forcina et al. (2012), as extension of the model proposed in Brown and Payne (1986). Allows incorporation of covariates.
References:
Brown, P. and Payne, C. (1986). ''Aggregate data, ecological regression and voting transitions''. Journal of the American Statistical Association, 81, 453–460. <DOI:10.1080/01621459.1986.10478290>.
Forcina, A., Gnaldi, M. and Bracalente, B. (2012). ''A revised Brown and Payne model of voting behaviour applied to the 2009 elections in Italy''. Statistical Methods & Applications, 21, 109–119. <DOI:10.1007/s10260-011-0184-x>.
Author: Antonio Forcina [aut] ,
Jose M. Pavia [aut, cre]
Maintainer: Jose M. Pavia <jose.m.pavia@uv.es>
Diff between eiCircles versions 0.0.1-6 dated 2024-02-17 and 0.0.1-7 dated 2024-03-24
DESCRIPTION | 10 +- MD5 | 11 +- NAMESPACE | 16 ++- NEWS.md |only R/BPF.R | 43 ++++++--- R/auxiliary_functions.R | 216 ++++++++++++++++++++++++++++++++++++++++++++++++ man/BPF.Rd | 2 7 files changed, 266 insertions(+), 32 deletions(-)
Title: Model Visualisation Toolbox for 'easystats' and 'ggplot2'
Description: Provides plotting utilities supporting packages in the 'easystats'
ecosystem (<https://github.com/easystats/easystats>) and some extra themes,
geoms, and scales for 'ggplot2'. Color scales are based on
<https://materialui.co/colors>.
References: Lüdecke et al. (2021) <doi:10.21105/joss.03393>.
Author: Daniel Luedecke [aut, ctb] ,
Dominique Makowski [aut, inv] ,
Indrajeet Patil [aut, cre] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Brenton M. Wiernik [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Jeffrey R. Stevens [ctb] ,
Matthew Smith [rev] ,
Jakob Bossek [re [...truncated...]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between see versions 0.8.2 dated 2024-02-14 and 0.8.3 dated 2024-03-24
DESCRIPTION | 26 MD5 | 96 +- NAMESPACE | 2 NEWS.md | 17 R/coord_radar.R | 6 R/data_plot.R | 399 ++++++------ R/plot.check_heteroscedasticity.R | 168 ++--- R/plot.check_homogeneity.R | 4 R/plot.check_model.R | 537 ++++++++-------- R/plot.check_normality.R | 828 +++++++++++++------------ R/plot.check_overdisp.R | 124 +-- R/plot.check_predictions.R | 941 ++++++++++++++--------------- R/plot.compare_parameters.R | 4 R/plot.estimate_contrasts.R | 4 R/plot.estimate_density.R | 564 ++++++++--------- R/plot.n_factors.R | 390 ++++++------ R/plot.parameters_brms_meta.R | 488 +++++++-------- R/plot.parameters_model.R | 44 - R/plot.performance_simres.R |only R/plot.point_estimates.R | 550 ++++++++-------- R/plots.R | 240 +++---- R/scale_color_bluebrown.R | 11 R/scale_color_colorhex.R | 8 R/scale_color_flat.R | 4 R/scale_color_material.R | 4 R/scale_color_metro.R | 4 R/scale_color_okabeito.R | 2 R/scale_color_pizza.R | 4 R/scale_color_see.R | 4 R/scale_color_social.R | 4 build/partial.rdb |binary inst/WORDLIST | 3 man/add_plot_attributes.Rd | 4 man/coord_radar.Rd | 6 man/plot.see_check_heteroscedasticity.Rd | 4 man/plot.see_check_homogeneity.Rd | 5 man/plot.see_check_model.Rd | 4 man/plot.see_check_normality.Rd | 7 man/plot.see_compare_parameters.Rd | 4 man/plot.see_estimate_contrasts.Rd | 4 man/plot.see_n_factors.Rd | 4 man/plot.see_parameters_brms_meta.Rd | 2 man/plot.see_performance_simres.Rd |only man/print.see_performance_pp_check.Rd | 8 man/theme_abyss.Rd | 4 man/theme_blackboard.Rd | 4 man/theme_lucid.Rd | 4 man/theme_modern.Rd | 4 man/theme_radar.Rd | 4 tests/testthat/test-plot.performance_roc.R | 7 50 files changed, 2828 insertions(+), 2731 deletions(-)
Title: Analyze Cricket Performances Based on Data from Cricsheet
Description: Analyzing performances of cricketers and cricket teams
based on 'yaml' match data from Cricsheet <https://cricsheet.org/>.
Author: Tinniam V Ganesh
Maintainer: Tinniam V Ganesh <tvganesh.85@gmail.com>
Diff between yorkr versions 0.0.41 dated 2023-05-08 and 0.0.42 dated 2024-03-24
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/getIPLBattingDetails.R | 3 ++- R/getIPLBowlingDetails.R | 3 ++- R/saveAllMatchesAllOppositionIPLT20.R | 3 ++- R/saveAllMatchesBetween2IPLTeams.R | 3 ++- 6 files changed, 17 insertions(+), 13 deletions(-)
Title: A Graphical User Interface for the MuToss Project
Description: Provides a graphical user interface for the MuToss Project.
Author: MuToss Coding Team , Gilles Blanchard, Thorsten Dickhaus,
Niklas Hack, Frank Konietschke, Kornelius Rohmeyer,
Jonathan Rosenblatt, Marsel Scheer, Wiebke Werft
Maintainer: Kornelius Rohmeyer <rohmeyer@small-projects.de>
Diff between mutossGUI versions 0.1-11 dated 2017-12-04 and 0.1-12 dated 2024-03-24
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/onLoad.R | 2 +- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Interpolation and Extrapolation for Species Diversity
Description: Provides simple functions to compute and plot two types
(sample-size- and coverage-based) rarefaction and extrapolation curves for species
diversity (Hill numbers) based on individual-based abundance data or sampling-unit-
based incidence data; see Chao and others (2014, Ecological Monographs) for pertinent
theory and methodologies, and Hsieh, Ma and Chao (2016, Methods in Ecology and Evolution)
for an introduction of the R package.
Author: T. C. Hsieh, K. H. Ma and Anne Chao
Maintainer: T. C. Hsieh <euler96@gmail.com>
Diff between iNEXT versions 3.0.0 dated 2022-08-29 and 3.0.1 dated 2024-03-24
DESCRIPTION | 6 MD5 | 12 NEWS | 179 ++++++------ R/ggiNEXT.R | 664 ++++++++++++++++++++++++---------------------- build/vignette.rds |binary inst/CITATION | 66 ++-- inst/doc/Introduction.pdf |binary 7 files changed, 481 insertions(+), 446 deletions(-)
Title: Geometrically Designed Spline Regression
Description: Spline Regression, Generalized Additive Models, and Component-wise Gradient
Boosting, utilizing Geometrically Designed (GeD) Splines. GeDS regression is a
non-parametric method inspired by geometric principles, for fitting spline regression
models with variable knots in one or two independent variables. It efficiently estimates
the number of knots and their positions, as well as the spline order, assuming the
response variable follows a distribution from the exponential family. GeDS models
integrate the broader category of Generalized (Non-)Linear Models, offering a flexible
approach to modeling complex relationships. A description of the method can be found in
Kaishev et al. (2016) <doi:10.1007/s00180-015-0621-7> and Dimitrova et al. (2023)
<doi:10.1016/j.amc.2022.127493>. Further extending its capabilities, GeDS's implementation
includes Generalized Additive Models (GAM) and Functional Gradient Boosting (FGB),
enabling versatile multivariate predictor modeling, as discuss [...truncated...]
Author: Dimitrina S. Dimitrova <D.Dimitrova@city.ac.uk>,
Emilio S. Guillen <Emilio.Saenz-Guillen@bayes.city.ac.uk>,
Vladimir K. Kaishev <V.Kaishev@city.ac.uk>,
Andrea Lattuada <andrea.lattuada@hotmail.com> and
Richard J. Verrall <R.J.Verrall@city.ac.uk>
Maintainer: Emilio S. Guillen <Emilio.Saenz-Guillen@bayes.city.ac.uk>
Diff between GeDS versions 0.1.4 dated 2023-12-06 and 0.2.0 dated 2024-03-24
GeDS-0.1.4/GeDS/R/GEDSClass.R |only GeDS-0.1.4/GeDS/R/SplineReg_fast_biv.R |only GeDS-0.1.4/GeDS/R/SplineReg_fast_weighted_zed.R |only GeDS-0.1.4/GeDS/R/lm.wfit.light.R |only GeDS-0.1.4/GeDS/R/makeNewMatr.R |only GeDS-0.1.4/GeDS/R/makeNewRes.R |only GeDS-0.1.4/GeDS/man/Fitters.Rd |only GeDS-0.2.0/GeDS/DESCRIPTION | 35 GeDS-0.2.0/GeDS/MD5 | 104 +- GeDS-0.2.0/GeDS/NAMESPACE | 37 GeDS-0.2.0/GeDS/R/BivariateFitter.R | 1174 +++++++++++++++-------- GeDS-0.2.0/GeDS/R/GGeDS.R | 522 +++++----- GeDS-0.2.0/GeDS/R/GeDS-package.R | 162 +-- GeDS-0.2.0/GeDS/R/GeDSClass.R |only GeDS-0.2.0/GeDS/R/IRLSfit.R | 129 +- GeDS-0.2.0/GeDS/R/IntegrateDerive.R | 166 +-- GeDS-0.2.0/GeDS/R/NGeDS.R | 495 +++++---- GeDS-0.2.0/GeDS/R/NGeDSboost.R |only GeDS-0.2.0/GeDS/R/NGeDSgam.R |only GeDS-0.2.0/GeDS/R/S3methods.R | 779 +++++++++------ GeDS-0.2.0/GeDS/R/S3methods_GeDSboost-GeDSgam.R |only GeDS-0.2.0/GeDS/R/SplineReg.R | 420 ++++---- GeDS-0.2.0/GeDS/R/SplineReg_Multivar.R |only GeDS-0.2.0/GeDS/R/SplineReg_biv.R | 122 ++ GeDS-0.2.0/GeDS/R/UnivariateFitter.R | 831 ++++++++++------ GeDS-0.2.0/GeDS/R/dynlib.R | 138 +- GeDS-0.2.0/GeDS/R/helpers.R |only GeDS-0.2.0/GeDS/R/helpers_NGeDSboost-NGeDSgam.R |only GeDS-0.2.0/GeDS/R/lines_GeDSMethod.R | 125 +- GeDS-0.2.0/GeDS/R/plot_GeDSMethod.R | 803 +++++++++------ GeDS-0.2.0/GeDS/R/pprep.R | 75 - GeDS-0.2.0/GeDS/R/read.formula.R | 266 +++-- GeDS-0.2.0/GeDS/R/unexported.R | 1 GeDS-0.2.0/GeDS/README.md | 2 GeDS-0.2.0/GeDS/man/BaFe2As2.Rd | 26 GeDS-0.2.0/GeDS/man/BivariateFitters.Rd |only GeDS-0.2.0/GeDS/man/Derive.Rd | 46 GeDS-0.2.0/GeDS/man/EWmortality.Rd | 9 GeDS-0.2.0/GeDS/man/GGeDS.Rd | 310 +++--- GeDS-0.2.0/GeDS/man/GeDS-class.Rd | 108 +- GeDS-0.2.0/GeDS/man/GeDS-package.Rd | 133 +- GeDS-0.2.0/GeDS/man/GeDSboost-class.Rd |only GeDS-0.2.0/GeDS/man/GeDSgam-class.Rd |only GeDS-0.2.0/GeDS/man/IRLSfit.Rd | 111 +- GeDS-0.2.0/GeDS/man/Integrate.Rd | 54 - GeDS-0.2.0/GeDS/man/NGeDS.Rd | 267 ++--- GeDS-0.2.0/GeDS/man/NGeDSboost.Rd |only GeDS-0.2.0/GeDS/man/NGeDSgam.Rd |only GeDS-0.2.0/GeDS/man/PPolyRep.Rd | 51 GeDS-0.2.0/GeDS/man/SplineReg.Rd | 238 ++-- GeDS-0.2.0/GeDS/man/UnivariateFitters.Rd |only GeDS-0.2.0/GeDS/man/bl_imp.Rd |only GeDS-0.2.0/GeDS/man/coalMining.Rd | 9 GeDS-0.2.0/GeDS/man/coef.GeDSboost_GeDSgam.Rd |only GeDS-0.2.0/GeDS/man/coef.Rd | 61 - GeDS-0.2.0/GeDS/man/deviance.GeDS.Rd | 47 GeDS-0.2.0/GeDS/man/f.Rd | 35 GeDS-0.2.0/GeDS/man/formula.GeDS.Rd | 78 - GeDS-0.2.0/GeDS/man/knots.Rd | 59 - GeDS-0.2.0/GeDS/man/lines-GeDS-method.Rd | 50 GeDS-0.2.0/GeDS/man/plot-GeDS-method.Rd | 102 + GeDS-0.2.0/GeDS/man/predict.GeDS.Rd | 77 - GeDS-0.2.0/GeDS/man/predict.GeDSboost_GeDSgam.Rd |only GeDS-0.2.0/GeDS/man/print.GeDS.Rd | 43 GeDS-0.2.0/GeDS/man/visualize_boosting.Rd |only 65 files changed, 5047 insertions(+), 3253 deletions(-)
Title: Maximum Likelihood Estimation and Related Tools
Description: Functions for Maximum Likelihood (ML) estimation, non-linear
optimization, and related tools. It includes a unified way to call
different optimizers, and classes and methods to handle the results from
the Maximum Likelihood viewpoint. It also includes a number of convenience
tools for testing and developing your own models.
Author: Ott Toomet [aut, cre],
Arne Henningsen [aut],
Spencer Graves [ctb],
Yves Croissant [ctb],
David Hugh-Jones [ctb],
Luca Scrucca [ctb]
Maintainer: Ott Toomet <otoomet@gmail.com>
Diff between maxLik versions 1.5-2 dated 2021-07-26 and 1.5-2.1 dated 2024-03-24
DESCRIPTION | 7 +++---- MD5 | 23 +++++++++++++---------- NEWS | 5 ----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/intro-to-maximum-likelihood.R |only inst/doc/intro-to-maximum-likelihood.pdf |binary inst/doc/stochastic-gradient-maxLik.R |only inst/doc/stochastic-gradient-maxLik.pdf |binary inst/doc/using-maxlik.R |only inst/doc/using-maxlik.pdf |binary man/maxControl.Rd | 2 +- man/maxNR.Rd | 6 +++--- man/returnCode.Rd | 2 +- 14 files changed, 21 insertions(+), 24 deletions(-)
Title: Marginal Effects for Model Objects
Description: An R port of Stata's 'margins' command, which can be used to
calculate marginal (or partial) effects from model objects.
Author: Thomas J. Leeper [aut, cre] ,
Jeffrey Arnold [ctb],
Vincent Arel-Bundock [ctb],
Jacob A. Long [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between margins versions 0.3.26 dated 2021-01-22 and 0.3.26.1 dated 2024-03-24
DESCRIPTION | 7 MD5 | 22 build/vignette.rds |binary inst/doc/Introduction.R | 368 +-- inst/doc/Introduction.Rmd |only inst/doc/Introduction.html | 4508 ++++++++++++++++++++++------------------- inst/doc/Stata.R | 120 - inst/doc/Stata.Rmd |only inst/doc/Stata.html | 4072 ++++++++++++++++++------------------- inst/doc/TechnicalDetails.R | 334 +-- inst/doc/TechnicalDetails.Rnw | 2 inst/doc/TechnicalDetails.pdf |binary vignettes/TechnicalDetails.Rnw | 2 13 files changed, 4883 insertions(+), 4552 deletions(-)
Title: Pedigree Functions
Description: Routines to handle family data with a pedigree object. The initial purpose
was to create correlation structures that describe family relationships such
as kinship and identity-by-descent, which can be used to model family data
in mixed effects models, such as in the coxme function. Also includes a tool
for pedigree drawing which is focused on producing compact layouts without
intervention. Recent additions include utilities to trim the pedigree object
with various criteria, and kinship for the X chromosome.
Author: Jason Sinnwell [aut, cre],
Terry Therneau [aut],
Daniel Schaid [ctb],
Elizabeth Atkinson [ctb],
Carly Mester [ctb]
Maintainer: Jason Sinnwell <sinnwell.jason@mayo.edu>
Diff between kinship2 versions 1.9.6 dated 2022-10-05 and 1.9.6.1 dated 2024-03-24
DESCRIPTION | 7 MD5 | 20 - build/vignette.rds |binary data/minnbreast.rda |binary inst/doc/align_code_details.html | 450 ++++++++++++++++------ inst/doc/kinship_code_details.R |only inst/doc/kinship_code_details.html | 589 +++++++++++++++++------------ inst/doc/pedigree.R |only inst/doc/pedigree.html | 719 ++++++++++++++++++++++-------------- inst/doc/pedigree_code_details.html | 142 ++++--- inst/doc/plot_code_details.html | 243 +++++++++--- man/plot.pedigree.Rd | 3 12 files changed, 1420 insertions(+), 753 deletions(-)
Title: Group Lasso Penalized Learning Using a Unified BMD Algorithm
Description: A unified algorithm, blockwise-majorization-descent (BMD), for efficiently computing the solution paths of the group-lasso penalized least squares, logistic regression, Huberized SVM and squared SVM. The package is an implementation of Yang, Y. and Zou, H. (2015) DOI: <doi:10.1007/s11222-014-9498-5>.
Author: Yi Yang [aut, cre] ,
Hui Zou [aut] ,
Sahir Bhatnagar [aut]
Maintainer: Yi Yang <yi.yang6@mcgill.ca>
Diff between gglasso versions 1.5 dated 2020-03-18 and 1.5.1 dated 2024-03-24
DESCRIPTION | 7 MD5 | 12 build/vignette.rds |binary data/bardet.rda |binary data/colon.rda |binary inst/doc/Introduction_to_gglasso_package.R |only inst/doc/Introduction_to_gglasso_package.Rmd |only inst/doc/Introduction_to_gglasso_package.html | 616 ++++++++++++++++++-------- 8 files changed, 443 insertions(+), 192 deletions(-)
Title: Safely Access the RStudio API
Description: Access the RStudio API (if available) and provide informative error
messages when it's not.
Author: Kevin Ushey [aut, cre],
JJ Allaire [aut],
Hadley Wickham [aut],
Gary Ritchie [aut],
RStudio [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between rstudioapi versions 0.15.0 dated 2023-07-07 and 0.16.0 dated 2024-03-24
DESCRIPTION | 8 +-- MD5 | 81 +++++++++++++++++---------------- NAMESPACE | 5 ++ NEWS.md | 8 +++ R/bug-report.R | 2 R/commands.R | 5 +- R/jobs.R | 88 ++++++++++++++++++------------------ R/remote.R | 18 +++++++ R/stubs.R | 25 +++++++++- build/vignette.rds |binary inst/doc/dialogs.html | 4 - inst/doc/document-manipulation.html | 4 - inst/doc/projects.html | 4 - inst/doc/r-session.html | 4 - inst/doc/terminal.html | 4 - inst/doc/visual-mode.R | 2 inst/doc/visual-mode.html | 4 - inst/resources/bug-report.md | 14 +++++ man/executeCommand.Rd | 4 - man/isJob.Rd | 12 ++++ man/jobAdd.Rd | 15 ++++-- man/jobAddOutput.Rd | 13 ++++- man/jobAddProgress.Rd | 13 ++++- man/jobGetState.Rd |only man/jobList.Rd |only man/jobRemove.Rd | 15 ++++-- man/jobRunScript.Rd | 15 ++++-- man/jobSetProgress.Rd | 15 ++++-- man/jobSetState.Rd | 15 ++++-- man/jobSetStatus.Rd | 15 ++++-- man/launcherAvailable.Rd | 2 man/launcherConfig.Rd | 2 man/launcherContainer.Rd | 2 man/launcherControlJob.Rd | 2 man/launcherGetInfo.Rd | 2 man/launcherHostMount.Rd | 2 man/launcherNfsMount.Rd | 2 man/launcherPlacementConstraint.Rd | 2 man/launcherResourceLimit.Rd | 2 man/launcherSubmitJob.Rd | 2 man/launcherSubmitR.Rd | 2 man/restartSession.Rd | 9 ++- man/setGhostText.Rd |only 43 files changed, 292 insertions(+), 151 deletions(-)
Title: Data Only: Tools for Approximate Bayesian Computation (ABC)
Description: Contains data which are used by functions of the 'abc' package.
Author: Csillery Katalin [aut],
Lemaire Louisiane [aut],
Francois Olivier [aut],
Blum Michael [aut, cre]
Maintainer: Blum Michael <michael.blum.temp@gmail.com>
Diff between abc.data versions 1.0 dated 2015-05-05 and 1.1 dated 2024-03-24
DESCRIPTION | 11 +++++------ MD5 | 8 ++++---- data/human.rda |binary data/musigma2.rda |binary data/ppc.rda |binary 5 files changed, 9 insertions(+), 10 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-29 1.8
2020-04-12 1.7
2019-06-07 1.6
2019-05-20 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-02 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-03 2.1-5
2018-12-17 2.1-4
2018-02-21 2.1-3
2017-10-27 2.1-2
2017-09-14 2.1-1
2017-06-12 2.1-0
2017-03-23 2.0-1
2016-04-27 2.0-0
2015-09-29 1.0-2
2015-02-24 1.0-1
2014-11-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-09 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-08 0.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-10 1.1-1
2016-03-10 1.0-8
2015-10-01 1.0-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-03 1.2.2
2020-02-28 1.2
2014-08-01 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-10 3.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-24 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-01 2012.4-2
2012-05-03 2012.4-1
2009-06-25 2009.3-1
2007-06-11 2007.6-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-12 1.0.3
2022-08-16 1.0.2
2021-03-04 1.0.1
2021-01-25 1.0.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-10 1.1
2014-03-26 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-02 0.1.9.1
2013-07-28 0.1.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-12 0.99.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-09 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-24 1.0.1
2016-01-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-27 1.3
2014-08-12 1.2
2014-07-30 1.01
2013-05-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-14 0.2.4
2018-06-25 0.2.2
2018-02-14 0.1.2
2018-02-11 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-07-19 1.1.0
2023-05-30 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-06-01 0.3-1
2007-03-25 0.3-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-06 0.1.2
2018-08-16 0.1.1
2018-06-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-09 0.0.6
2014-03-03 0.0.5
2014-01-23 0.0.4
2014-01-16 0.0.3
2014-01-04 0.0.2
2013-10-19 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-17 0.1.1
2023-11-10 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-08 0.6-3
2015-10-07 0.6-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-17 0.6.5
2018-06-22 0.6.0
2017-05-29 0.5-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-13 2.2.10
2017-05-06 2.2.7
2017-04-26 2.2.6
2016-10-31 2.1.11
2016-10-25 2.1.10
2016-08-20 2.1.9
2016-02-11 2.0.5
2015-12-21 1.1.0