Title: Tools for Handling Indices and Proportions in Small Area
Estimation
Description: It allows for mapping proportions and indicators defined on the unit interval. It implements Beta-based small area methods comprising the classical Beta regression models, the Flexible Beta model and Zero and/or One Inflated extensions (Janicki 2020 <doi:10.1080/03610926.2019.1570266>). Such methods, developed within a Bayesian framework through Stan <https://mc-stan.org/>, come equipped with a set of diagnostics and complementary tools, visualizing and exporting functions. A Shiny application with a user-friendly interface can be launched to further simplify the process. For further details, refer to De Nicolò and Gardini (2024 <doi:10.18637/jss.v108.i01>).
Author: Silvia De Nicolo [aut, cre] ,
Aldo Gardini [aut]
Maintainer: Silvia De Nicolo <silvia.denicolo@unibo.it>
Diff between tipsae versions 0.0.18 dated 2023-09-18 and 1.0.0 dated 2024-03-26
DESCRIPTION | 10 MD5 | 40 R/benchmark.R | 16 R/extract.R | 11 R/fit_sae.R | 14 R/smoothing.R | 12 R/summary_fitsae.R | 13 R/tipsae-package.R | 7 build/partial.rdb |binary configure | 3 configure.win | 3 inst/CITATION |only inst/REFERENCES.bib | 23 man/benchmark.Rd | 2 man/fit_sae.Rd | 2 man/print.benchmark_fitsae.Rd |only man/print.estimates_fitsae.Rd |only man/print.fitsae.Rd |only man/print.smoothing_fitsae.Rd |only man/print.summary_fitsae.Rd |only man/smoothing.Rd | 2 man/summary.fitsae.Rd | 2 man/tipsae-package.Rd | 4 src/stanExports_global.h | 9270 +++++++++++++++++++++--------------------- 24 files changed, 4803 insertions(+), 4631 deletions(-)
Title: Embed 'SWI'-'Prolog'
Description: Interface to 'SWI'-'Prolog', <https://www.swi-prolog.org/>. This package is normally not loaded directly, please refer to package 'rolog' instead. The purpose of this package is to provide the 'Prolog' runtime on systems that do not have a software installation of 'SWI'-'Prolog'.
Author: Matthias Gondan [aut, com, cre] ,
Jan Wielemaker [ctb, cph] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rswipl versions 9.3.3 dated 2024-03-16 and 9.3.3.1 dated 2024-03-26
rswipl-9.3.3.1/rswipl/DESCRIPTION | 8 rswipl-9.3.3.1/rswipl/MD5 | 85 +-- rswipl-9.3.3.1/rswipl/NEWS.md | 6 rswipl-9.3.3.1/rswipl/src/Makevars | 29 - rswipl-9.3.3.1/rswipl/src/Makevars.win | 14 rswipl-9.3.3.1/rswipl/src/swipl-devel/boot/init.pl | 41 - rswipl-9.3.3.1/rswipl/src/swipl-devel/boot/messages.pl | 9 rswipl-9.3.3.1/rswipl/src/swipl-devel/cmake/Config.cmake | 1 rswipl-9.3.3.1/rswipl/src/swipl-devel/library/prolog_stack.pl | 3 rswipl-9.3.3.1/rswipl/src/swipl-devel/library/sandbox.pl | 1 rswipl-9.3.3.1/rswipl/src/swipl-devel/packages/clib/bsd-crypt.c | 2 rswipl-9.3.3.1/rswipl/src/swipl-devel/packages/clib/process.c | 2 rswipl-9.3.3.1/rswipl/src/swipl-devel/packages/cpp/SWI-cpp2-plx.h | 2 rswipl-9.3.3.1/rswipl/src/swipl-devel/packages/cpp/SWI-cpp2.cpp | 14 rswipl-9.3.3.1/rswipl/src/swipl-devel/packages/cpp/SWI-cpp2.h | 58 +- rswipl-9.3.3.1/rswipl/src/swipl-devel/packages/cpp/pl2cpp2.doc | 9 rswipl-9.3.3.1/rswipl/src/swipl-devel/packages/cpp/test_cpp.cpp | 129 ++++ rswipl-9.3.3.1/rswipl/src/swipl-devel/packages/cpp/test_cpp.pl | 37 + rswipl-9.3.3.1/rswipl/src/swipl-devel/packages/ssl/CMakeLists.txt | 4 rswipl-9.3.3.1/rswipl/src/swipl-devel/src/ATOMS | 1 rswipl-9.3.3.1/rswipl/src/swipl-devel/src/SWI-Prolog.h | 3 rswipl-9.3.3.1/rswipl/src/swipl-devel/src/Tests/core/test_arith.pl | 33 + rswipl-9.3.3.1/rswipl/src/swipl-devel/src/os/SWI-Stream.h | 4 rswipl-9.3.3.1/rswipl/src/swipl-devel/src/os/pl-fmt.c | 35 - rswipl-9.3.3.1/rswipl/src/swipl-devel/src/os/pl-stream.c | 9 rswipl-9.3.3.1/rswipl/src/swipl-devel/src/pl-arith.c | 76 +- rswipl-9.3.3.1/rswipl/src/swipl-devel/src/pl-debug.c | 2 rswipl-9.3.3.1/rswipl/src/swipl-devel/src/pl-debug.h | 4 rswipl-9.3.3.1/rswipl/src/swipl-devel/src/pl-global.h | 7 rswipl-9.3.3.1/rswipl/src/swipl-devel/src/pl-gmp.c | 270 +++++++--- rswipl-9.3.3.1/rswipl/src/swipl-devel/src/pl-gmp.h | 41 - rswipl-9.3.3.1/rswipl/src/swipl-devel/src/pl-init.c | 8 rswipl-9.3.3.1/rswipl/src/swipl-devel/src/pl-ntmain.c | 2 rswipl-9.3.3.1/rswipl/src/swipl-devel/src/pl-segstack.c | 2 rswipl-9.3.3.1/rswipl/src/swipl-devel/src/pl-vmi.c | 8 rswipl-9.3.3.1/rswipl/src/swipl-devel/src/pl-wam.c | 19 rswipl-9.3.3.1/rswipl/src/swipl-devel/src/pl-write.c | 21 rswipl-9.3.3/rswipl/src/swipl-devel/packages/table |only 38 files changed, 670 insertions(+), 329 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of multiple standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for comprehensive summary statistics via pivot tables, a comprehensive regression analysis, ANOVA and t-test, visualizations including the Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, and Trellis graphics. Also includes a confirmatory factor analysis of multiple indicator measurement models, pedagogical routines for data simulation such as for the Central Limit Theorem, generation and rendering of regression instructions for interpretative output, and interactive visualizations.
Author: David Gerbing, The School of Business, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.3.0 dated 2023-11-11 and 4.3.1 dated 2024-03-26
DESCRIPTION | 13 - MD5 | 126 +++++----- NEWS.md | 86 ++++-- R/BarChart.R | 310 ++++++++++--------------- R/Histogram.R | 39 +-- R/Plot.R | 132 +++++----- R/Read.R | 57 +++- R/Write.R | 41 +++ R/bc.data.frame.R | 8 R/bc.main.R | 43 +++ R/details.R | 42 ++- R/logit.3Residual.R | 2 R/pivot.R | 32 +- R/plt.bad.R | 2 R/plt.lattice.R | 10 R/plt.main.R | 29 +- R/plt.panel.R | 2 R/plt.shapes.R | 20 - R/reg.1fitBasic.R | 12 R/rename.R | 27 +- R/zzz.R | 2 build/vignette.rds |binary inst/doc/BarChart.html | 12 inst/doc/Customize.html | 4 inst/doc/Extract.html | 26 +- inst/doc/FactorAnalysis.html | 4 inst/doc/Histogram.html | 10 inst/doc/Means.html | 16 - inst/doc/Plot.R | 9 inst/doc/Plot.Rmd | 14 + inst/doc/Plot.html | 120 ++++++--- inst/doc/Proportions.html | 4 inst/doc/ReadWrite.R | 3 inst/doc/ReadWrite.Rmd | 7 inst/doc/ReadWrite.html | 64 ++++- inst/doc/Regression.html | 76 +++--- inst/doc/Time.Rmd | 8 inst/doc/Time.html | 67 +++-- inst/doc/pivot.Rmd | 2 inst/doc/pivot.html | 471 ++++++++++++++++++++++++++++++-------- inst/doc/utilities.Rmd | 2 inst/doc/utilities.html | 8 inst/shiny_apps/BarChart/app.R | 6 inst/shiny_apps/Histogram/app.R | 2 inst/shiny_apps/PieChart/app.R | 2 inst/shiny_apps/ScatterPlot/app.R | 13 - inst/shiny_apps/Trellis/app.R | 2 man/BarChart.Rd | 317 ++++++++++++++----------- man/Histogram.Rd | 196 +++++++++------ man/Plot.Rd | 297 ++++++++++++++--------- man/Read.Rd | 14 - man/Regression.Rd | 4 man/SummaryStats.Rd | 3 man/Write.Rd | 7 man/details.Rd | 7 man/pivot.Rd | 13 - man/recode.Rd | 2 man/rename.Rd | 25 +- man/style.Rd | 9 vignettes/Plot.Rmd | 14 + vignettes/ReadWrite.Rmd | 7 vignettes/Time.Rmd | 8 vignettes/pivot.Rmd | 2 vignettes/utilities.Rmd | 2 64 files changed, 1859 insertions(+), 1055 deletions(-)
Title: Computation of Optimal Transport Plans and Wasserstein Distances
Description: Solve optimal transport problems. Compute Wasserstein distances (a.k.a. Kantorovitch, Fortet--Mourier, Mallows, Earth Mover's, or minimal L_p distances), return the corresponding transference plans, and display them graphically. Objects that can be compared include grey-scale images, (weighted) point patterns, and mass vectors.
Author: Dominic Schuhmacher [aut, cre],
Bjoern Baehre [aut] ,
Nicolas Bonneel [aut] ,
Carsten Gottschlich [aut] ,
Valentin Hartmann [aut] ,
Florian Heinemann [aut] ,
Bernhard Schmitzer [aut] ,
Joern Schrieber [aut] ,
Timo Wilm [ctb]
Maintainer: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>
Diff between transport versions 0.14-7 dated 2024-02-18 and 0.15-0 dated 2024-03-26
transport-0.14-7/transport/man/plot.ubtrans.Rd |only transport-0.15-0/transport/DESCRIPTION | 10 - transport-0.15-0/transport/MD5 | 30 ++-- transport-0.15-0/transport/NAMESPACE | 11 + transport-0.15-0/transport/NEWS | 25 +++ transport-0.15-0/transport/R/fundament.R | 76 ++-------- transport-0.15-0/transport/R/lilhelpers.R | 7 transport-0.15-0/transport/R/unbalanced.R | 111 +++++++++------ transport-0.15-0/transport/R/unbalanced_wpp.R |only transport-0.15-0/transport/build/partial.rdb |binary transport-0.15-0/transport/man/aha.Rd | 6 transport-0.15-0/transport/man/plot.Rd | 2 transport-0.15-0/transport/man/plot.ut_pgrid.Rd |only transport-0.15-0/transport/man/plot.ut_wpp.Rd |only transport-0.15-0/transport/man/transport.Rd | 2 transport-0.15-0/transport/man/unbalanced.Rd | 89 +++++++----- transport-0.15-0/transport/tests/testthat/_snaps/main.md | 50 +++--- transport-0.15-0/transport/tests/testthat/test-main.R | 76 +++++++++- 18 files changed, 296 insertions(+), 199 deletions(-)
Title: The Fisheries Scientist's Toolbox
Description: A bundle of analytics tools for fisheries scientists. A 'shiny' R App is included for a 'no-code' solution for retrieval, analysis, and visualization.
Author: Pasquale Buonomo [cre, aut]
Maintainer: Pasquale Buonomo <pasqualebuonomo@hotmail.it>
Diff between fishRman versions 1.2.2 dated 2023-12-08 and 1.2.3 dated 2024-03-26
fishRman-1.2.2/fishRman/R/bait.gfw.effort.R |only fishRman-1.2.2/fishRman/R/bait.mr.boundaries.R |only fishRman-1.2.2/fishRman/R/fish.R |only fishRman-1.2.2/fishRman/man/bait.gfw.effort.Rd |only fishRman-1.2.2/fishRman/man/bait.mr.boundaries.Rd |only fishRman-1.2.2/fishRman/man/fish.Rd |only fishRman-1.2.2/fishRman/tests/testthat/test-bait.gfw.effort.R |only fishRman-1.2.2/fishRman/tests/testthat/test-bait.mr.boundaries.R |only fishRman-1.2.2/fishRman/tests/testthat/test-fish.R |only fishRman-1.2.3/fishRman/DESCRIPTION | 10 fishRman-1.2.3/fishRman/MD5 | 35 - fishRman-1.2.3/fishRman/NAMESPACE | 8 fishRman-1.2.3/fishRman/R/app_server.R | 313 ---------- fishRman-1.2.3/fishRman/R/app_ui.R | 198 ------ fishRman-1.2.3/fishRman/R/df.type.R | 3 fishRman-1.2.3/fishRman/R/gfw.summarize.R | 20 fishRman-1.2.3/fishRman/R/top.percent.by.R | 18 fishRman-1.2.3/fishRman/R/utils_server.R | 41 - fishRman-1.2.3/fishRman/R/utils_ui.R | 36 - fishRman-1.2.3/fishRman/README.md | 4 fishRman-1.2.3/fishRman/man/df.type.Rd | 6 fishRman-1.2.3/fishRman/man/gfw.summarize.Rd | 20 fishRman-1.2.3/fishRman/man/top.percent.by.Rd | 21 23 files changed, 113 insertions(+), 620 deletions(-)
Title: Perform Boolean Operations on Large Numbers
Description: These tools accept integers in any base from 2 to 36, including 2's complement format, and perform actions like "AND," "OR", "NOT", "SHIFTR/L" etc. The output can be in any base specified. A direct base to base converter is included.
Author: Carl Witthoft [aut, cre]
Maintainer: Carl Witthoft <cellocgw@gmail.com>
Diff between bigBits versions 1.1 dated 2023-09-06 and 1.2 dated 2024-03-26
ChangeLog | 3 ++ DESCRIPTION | 8 +++--- MD5 | 16 ++++++------- NAMESPACE | 4 +-- R/base2base.R | 65 +++++++++++++++++++++++++++++++++++++++++++----------- R/fracB2B.R | 6 ++++ build/partial.rdb |binary man/base2base.Rd | 8 +++--- man/fracB2B.Rd | 4 +-- 9 files changed, 80 insertions(+), 34 deletions(-)
Title: Simulation and Prediction with Seasonal ARIMA Models
Description: Functions, classes and methods for time series modelling with ARIMA
and related models. The aim of the package is to provide consistent
interface for the user. For example, a single function autocorrelations()
computes various kinds of theoretical and sample autocorrelations. This is
work in progress, see the documentation and vignettes for the current
functionality. Function sarima() fits extended multiplicative seasonal
ARIMA models with trends, exogenous variables and arbitrary roots on the
unit circle, which can be fixed or estimated (for the algebraic basis for
this see <arXiv:2208.05055>, a paper on the methodology is being prepared).
Author: Georgi N. Boshnakov [aut, cre],
Jamie Halliday [aut]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between sarima versions 0.9.2 dated 2024-03-01 and 0.9.3 dated 2024-03-26
DESCRIPTION | 11 +--- MD5 | 24 ++++----- NEWS.md | 104 ++++++++++++++++++++++----------------- R/fitTools.R | 21 +++---- R/zzz.R | 32 ------------ build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 13 +++- inst/auto/REFERENCES.el | 2 inst/doc/garch_tests_example.pdf |binary inst/doc/white_noise_tests.pdf |binary man/FisherInformation-methods.Rd | 4 - man/tsdiag.Sarima.Rd | 31 +++++++---- 13 files changed, 113 insertions(+), 129 deletions(-)
Title: Pedigree-based Relatedness Coefficients
Description: Recursive algorithms for computing various relatedness
coefficients, including pairwise kinship, kappa and identity
coefficients. Both autosomal and X-linked coefficients are computed.
Founders are allowed to be inbred, which enables construction of any
given kappa coefficients, as described in Vigeland (2020)
<doi:10.1007/s00285-020-01505-x>. In addition to the standard
coefficients, 'ribd' also computes a range of lesser-known
coefficients, including generalised kinship coefficients, multi-person
coefficients and two-locus coefficients (Vigeland, 2023,
<doi:10.1093/g3journal/jkac326>). Many features of 'ribd' are
available through the online app 'QuickPed' at
<https://magnusdv.shinyapps.io/quickped>; see Vigeland (2022)
<doi:10.1186/s12859-022-04759-y>.
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between ribd versions 1.6.1 dated 2023-08-10 and 1.7.0 dated 2024-03-26
DESCRIPTION | 22 - MD5 | 54 +-- NAMESPACE | 5 NEWS.md | 24 + R/condensedIdentity.R | 5 R/constructPedigree.R | 2 R/data.R | 14 R/external_relatedness.R | 15 R/ibdTriangle.R | 537 +++++++++++++++++++++++++------- R/identity_LS.R | 2 R/inbreeding.R | 33 - R/kappaIbd.R | 56 +-- R/kinship.R | 224 +++++-------- R/utils.R | 2 README.md | 7 build/partial.rdb |binary data/basicRelationships.rda |only man/basicRelationships.Rd |only man/external_coefs.Rd | 8 man/figures/README-coef-construct-1.png |binary man/figures/README-halfsibstack-1.png |binary man/figures/README-triangle-S-1.png |binary man/ibdTriangle.Rd | 81 ++-- man/inbreeding.Rd | 3 man/kappaIBD.Rd | 52 +-- man/kinship.Rd | 25 - man/ribd-package.Rd | 2 man/showInTriangle.Rd | 79 +++- tests/testthat/test-kinship.R | 58 +++ 29 files changed, 840 insertions(+), 470 deletions(-)
Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] ,
Lennart Schneider [aut] ,
Bernd Bischl [aut] ,
Michel Lang [aut] ,
Sebastian Fischer [ctb] ,
Susanne Dandl [aut]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.5.0-2 dated 2023-12-08 and 0.5.1 dated 2024-03-26
DESCRIPTION | 8 MD5 | 186 ++++++++++----------- NAMESPACE | 1 NEWS.md | 8 R/Graph.R | 13 - R/LearnerAvg.R | 29 +-- R/PipeOp.R | 8 R/PipeOpBoxCox.R | 12 - R/PipeOpBranch.R | 10 - R/PipeOpChunk.R | 6 R/PipeOpClassBalancing.R | 14 - R/PipeOpClassWeights.R | 6 R/PipeOpColApply.R | 6 R/PipeOpColRoles.R | 6 R/PipeOpCollapseFactors.R | 8 R/PipeOpDateFeatures.R | 28 +-- R/PipeOpEncode.R | 6 R/PipeOpEncodeImpact.R | 8 R/PipeOpEncodeLmer.R | 6 R/PipeOpEnsemble.R | 11 - R/PipeOpFeatureUnion.R | 1 R/PipeOpFilter.R | 30 ++- R/PipeOpFixFactors.R | 6 R/PipeOpHistBin.R | 6 R/PipeOpICA.R | 24 +- R/PipeOpImpute.R | 18 +- R/PipeOpImputeConstant.R | 8 R/PipeOpImputeLearner.R | 6 R/PipeOpImputeOOR.R | 8 R/PipeOpKernelPCA.R | 14 - R/PipeOpLearner.R | 6 R/PipeOpLearnerCV.R | 22 +- R/PipeOpMissingIndicators.R | 8 R/PipeOpModelMatrix.R | 6 R/PipeOpMultiplicity.R | 6 R/PipeOpMutate.R | 8 R/PipeOpNMF.R | 49 ++--- R/PipeOpPCA.R | 10 - R/PipeOpProxy.R | 6 R/PipeOpQuantileBin.R | 6 R/PipeOpRandomProjection.R | 6 R/PipeOpRandomResponse.R | 7 R/PipeOpRemoveConstants.R | 12 - R/PipeOpRenameColumns.R | 8 R/PipeOpScale.R | 10 - R/PipeOpScaleMaxAbs.R | 6 R/PipeOpScaleRange.R | 8 R/PipeOpSelect.R | 6 R/PipeOpSmote.R | 8 R/PipeOpSpatialSign.R | 8 R/PipeOpSubsample.R | 10 - R/PipeOpTaskPreproc.R | 16 + R/PipeOpTextVectorizer.R | 77 +++----- R/PipeOpThreshold.R | 4 R/PipeOpTrafo.R | 33 +-- R/PipeOpTuneThreshold.R | 13 - R/PipeOpVtreat.R | 51 ++--- R/PipeOpYeoJohnson.R | 12 - R/assert_graph.R | 6 R/pipeline_bagging.R | 14 + R/pipeline_robustify.R | 2 R/pipeline_stacking.R | 2 R/ppl.R | 2 R/zzz.R | 3 build/partial.rdb |binary build/vignette.rds |binary inst/doc/comparison_mlr3pipelines_mlr_sklearn.html |only inst/doc/extending.html | 38 +++- inst/doc/introduction.html |only man/Graph.Rd | 9 - man/PipeOp.Rd | 2 man/PipeOpEnsemble.Rd | 2 man/PipeOpImpute.Rd | 2 man/PipeOpTargetTrafo.Rd | 2 man/PipeOpTaskPreproc.Rd | 2 man/PipeOpTaskPreprocSimple.Rd | 2 man/mlr_graphs_bagging.Rd | 19 +- man/mlr_pipeops_branch.Rd | 4 man/mlr_pipeops_updatetarget.Rd | 2 man/ppl.Rd | 2 tests/testthat/helper_functions.R | 34 ++- tests/testthat/helper_test_pipeops.R | 15 + tests/testthat/test_GraphLearner.R | 2 tests/testthat/test_dictionary.R | 32 ++- tests/testthat/test_mlr_graphs_bagging.R | 33 +++ tests/testthat/test_mlr_graphs_stacking.R | 8 tests/testthat/test_multiplicities.R | 4 tests/testthat/test_parvals.R | 2 tests/testthat/test_pipeop_featureunion.R | 15 + tests/testthat/test_pipeop_filter.R | 2 tests/testthat/test_pipeop_impute.R | 12 - tests/testthat/test_pipeop_learner.R | 12 + tests/testthat/test_pipeop_learnercv.R | 2 tests/testthat/test_po.R | 4 tests/testthat/test_ppl.R | 15 + 95 files changed, 704 insertions(+), 526 deletions(-)
Title: Create Interactive Web Maps with the JavaScript 'Leaflet'
Library
Description: Create and customize interactive maps using the 'Leaflet'
JavaScript library and the 'htmlwidgets' package. These maps can be
used directly from the R console, from 'RStudio', in Shiny
applications and R Markdown documents.
Author: Joe Cheng [aut, cre],
Barret Schloerke [aut] ,
Bhaskar Karambelkar [aut],
Yihui Xie [aut],
Hadley Wickham [ctb],
Kenton Russell [ctb],
Kent Johnson [ctb],
Vladimir Agafonkin [ctb, cph] ,
CloudMade [cph] ,
Leaflet contributors [ctb] ,
Brandon Copeland [...truncated...]
Maintainer: Joe Cheng <joe@posit.co>
Diff between leaflet versions 2.2.1 dated 2023-11-13 and 2.2.2 dated 2024-03-26
DESCRIPTION | 17 +++++++++-------- MD5 | 22 +++++++++++----------- NAMESPACE | 4 ++++ NEWS.md | 8 ++++++++ R/colors.R | 5 ++++- R/layers.R | 34 ++++++++++++++++++++++++++++++++-- R/leaflet-package.R | 1 - R/normalize-terra.R | 25 +++---------------------- README.md | 2 +- inst/htmlwidgets/assets/leaflet.js | 8 +++----- man/addRasterImage.Rd | 4 ++++ man/map-options.Rd | 12 ++++++++++++ 12 files changed, 91 insertions(+), 51 deletions(-)
Title: Access the 'Strava' API
Description: Functions to access data from the 'Strava v3 API' <https://developers.strava.com/>.
Author: Marcus W. Beck [cre],
Pedro Villarroel [aut],
Daniel Padfield [aut],
Lorenzo Gaborini [aut],
Niklas von Maltzahn [aut]
Maintainer: Marcus W. Beck <mbafs2012@gmail.com>
Diff between rStrava versions 1.3.0 dated 2023-10-20 and 1.3.1 dated 2024-03-26
DESCRIPTION | 10 ++--- MD5 | 28 +++++++-------- NAMESPACE | 2 - R/compile_activities.R | 6 +-- R/compile_activity.R | 19 +++++++++- R/get_heat_map.R | 65 +++++++++++++++++++++++++----------- R/globalVariables.R | 2 - R/recent_fun.R | 2 - man/figures/unnamed-chunk-12-1.png |binary man/figures/unnamed-chunk-13-1.png |binary man/figures/unnamed-chunk-13-2.png |binary man/figures/unnamed-chunk-17-1.png |binary man/get_heat_map.Rd | 20 ++++++----- man/get_laps.Rd | 66 ++++++++++++++++++------------------- man/seltime_fun.Rd | 52 ++++++++++++++--------------- 15 files changed, 155 insertions(+), 117 deletions(-)
Title: Tools for Managing Classes on GitHub
Description: Interface for the GitHub API that enables efficient
management of courses on GitHub. It has a functionality for
managing organizations, teams, repositories, and users on GitHub
and helps automate most of the tedious and repetitive tasks
around creating and distributing assignments.
Author: Colin Rundel [aut, cre],
Mine Cetinkaya-Rundel [aut],
Therese Anders [ctb]
Maintainer: Colin Rundel <rundel@gmail.com>
Diff between ghclass versions 0.2.1 dated 2022-01-06 and 0.3.0 dated 2024-03-26
ghclass-0.2.1/ghclass/R/action_status.R |only ghclass-0.3.0/ghclass/DESCRIPTION | 10 - ghclass-0.3.0/ghclass/MD5 | 56 +++--- ghclass-0.3.0/ghclass/NAMESPACE | 13 + ghclass-0.3.0/ghclass/NEWS.md | 32 +++ ghclass-0.3.0/ghclass/R/action.R | 32 +++ ghclass-0.3.0/ghclass/R/action_artifacts.R |only ghclass-0.3.0/ghclass/R/action_artifacts_delete.R |only ghclass-0.3.0/ghclass/R/action_artifacts_download.R |only ghclass-0.3.0/ghclass/R/action_runs.R | 162 ++++++++++++++------ ghclass-0.3.0/ghclass/R/action_runtime.R |only ghclass-0.3.0/ghclass/R/github_api_limit.R | 4 ghclass-0.3.0/ghclass/R/github_rate_limit.R |only ghclass-0.3.0/ghclass/R/github_token.R | 32 +++ ghclass-0.3.0/ghclass/R/issue_create.R | 30 +++ ghclass-0.3.0/ghclass/R/org_create_assignment.R | 24 ++ ghclass-0.3.0/ghclass/R/org_repos.R | 43 +++-- ghclass-0.3.0/ghclass/R/pages.R |only ghclass-0.3.0/ghclass/R/repo_create.R | 4 ghclass-0.3.0/ghclass/R/repo_put_file.R | 2 ghclass-0.3.0/ghclass/R/util_args.R | 17 ++ ghclass-0.3.0/ghclass/R/util_filter.R | 40 ++-- ghclass-0.3.0/ghclass/R/util_github.R | 48 +++++ ghclass-0.3.0/ghclass/R/util_repo.R | 6 ghclass-0.3.0/ghclass/README.md | 7 ghclass-0.3.0/ghclass/man/action.Rd | 104 +++++++++++- ghclass-0.3.0/ghclass/man/github_api_limit.Rd | 2 ghclass-0.3.0/ghclass/man/github_token.Rd | 20 ++ ghclass-0.3.0/ghclass/man/issue.Rd | 11 + ghclass-0.3.0/ghclass/man/org_create_assignment.Rd | 8 ghclass-0.3.0/ghclass/man/org_details.Rd | 19 ++ ghclass-0.3.0/ghclass/man/pages.Rd |only ghclass-0.3.0/ghclass/man/repo_core.Rd | 4 33 files changed, 580 insertions(+), 150 deletions(-)
Title: Estimate Migratory Connectivity for Migratory Animals
Description: Allows the user to estimate transition probabilities for
migratory animals between any two phases of the annual cycle, using a
variety of different data types. Also quantifies the strength of
migratory connectivity (MC), a standardized metric to quantify the
extent to which populations co-occur between two phases of the annual
cycle. Includes functions to estimate MC and the more traditional
metric of migratory connectivity strength (Mantel correlation)
incorporating uncertainty from multiple sources of sampling error. For
cross-species comparisons, methods are provided to estimate
differences in migratory connectivity strength, incorporating
uncertainty. See Cohen et al. (2018) <doi:10.1111/2041-210X.12916>,
Cohen et al. (2019) <doi:10.1111/ecog.03974>, and Roberts et al.
(2023) <doi:10.1002/eap.2788> for details on some of these methods.
Author: Jeffrey A. Hostetler [cre, aut],
Michael T. Hallworth [aut],
Clark S. Rushing [ctb],
Emily B. Cohen [ctb],
Valentine Herrmann [ctb]
Maintainer: Jeffrey A. Hostetler <jhostetler@usgs.gov>
Diff between MigConnectivity versions 0.4.6 dated 2024-03-18 and 0.4.7 dated 2024-03-26
DESCRIPTION | 8 +++---- MD5 | 12 +++++----- R/estConnectivity.R | 2 - inst/NEWS.md | 4 +++ inst/doc/MigConnectivity.html | 4 +-- inst/doc/olderFunctionality.html | 44 +++++++++++++++++++-------------------- inst/doc/simulateIsoMC.html | 4 +-- 7 files changed, 41 insertions(+), 37 deletions(-)
More information about MigConnectivity at CRAN
Permanent link
Title: Non-Parametric Causal Effects of Feasible Interventions Based on
Modified Treatment Policies
Description: Non-parametric estimators for casual effects based on longitudinal modified treatment
policies as described in Diaz, Williams, Hoffman, and Schenck <doi:10.1080/01621459.2021.1955691>, traditional point treatment,
and traditional longitudinal effects. Continuous, binary, and categorical treatments are allowed as well are
censored outcomes. The treatment mechanism is estimated via a density ratio classification procedure
irrespective of treatment variable type. For both continuous and binary outcomes, additive treatment effects
can be calculated and relative risks and odds ratios may be calculated for binary outcomes.
Author: Nicholas Williams [aut, cre, cph]
,
Ivan Diaz [aut, cph]
Maintainer: Nicholas Williams <ntwilliams.personal@gmail.com>
Diff between lmtp versions 1.3.2 dated 2023-07-19 and 1.3.3 dated 2024-03-26
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 10 ++++++++++ R/gcomp.R | 13 ++++++++++--- R/sdr.R | 13 ++++++++++--- R/tmle.R | 13 ++++++++++--- 6 files changed, 48 insertions(+), 17 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multisession)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implement additional backends for
processing futures via compute cluster schedulers, etc.
Because of its unified API, there is no need to modify any code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.33.1 dated 2023-12-22 and 1.33.2 dated 2024-03-26
DESCRIPTION | 9 MD5 | 41 - NAMESPACE | 2 NEWS.md | 23 R/ClusterRegistry.R | 3 R/Future-class.R | 26 R/globals.R | 2 R/journal.R | 48 - R/options.R | 23 R/zzz.plan.R | 24 build/vignette.rds |binary inst/WORDLIST | 692 +++++++++++------------ inst/doc/future-4-non-exportable-objects.html | 186 +++++- inst/doc/future-4-non-exportable-objects.md.rsp | 211 ++++++- inst/doc/future-7-for-package-developers.html | 11 inst/doc/future-7-for-package-developers.md.rsp | 17 man/future.options.Rd | 20 man/getGlobalsAndPackages.Rd | 2 man/plan.Rd | 24 tests/capture_journals.R |only vignettes/future-4-non-exportable-objects.md.rsp | 211 ++++++- vignettes/future-7-for-package-developers.md.rsp | 17 22 files changed, 1078 insertions(+), 514 deletions(-)
Title: IRT Equating Methods
Description: Computation of direct, chain and average (bisector) equating coefficients with
standard errors using Item Response Theory (IRT) methods for dichotomous items
(Battauz (2013) <doi:10.1007/s11336-012-9316-y>,
Battauz (2015) <doi:10.18637/jss.v068.i07>).
Test scoring can be performed by true score equating and observed score equating methods.
DIF detection can be performed using a Wald-type test
(Battauz (2019) <doi:10.1007/s10260-018-00442-w>).
The package includes tests to access the stability of the equating transformations
(Battauz(2022) <doi:10.1111/stan.12277>).
Author: Michela Battauz
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between equateIRT versions 2.3.0 dated 2022-08-08 and 2.4.0 dated 2024-03-26
DESCRIPTION | 6 MD5 | 18 NAMESPACE | 2 R/functions.r | 3847 +++++++++++++++++++-------------------- build/vignette.rds |binary inst/NEWS | 5 inst/doc/equateIRT_paper.pdf |binary inst/doc/equateIRT_tutorial.R | 6 inst/doc/equateIRT_tutorial.html | 499 ++--- man/score.Rd | 29 10 files changed, 2221 insertions(+), 2191 deletions(-)
Title: Exact Multinomial Test: Goodness-of-Fit Test for Discrete
Multivariate Data
Description: Goodness-of-fit tests for discrete multivariate data. It is
tested if a given observation is likely to have occurred under
the assumption of an ab-initio model. Monte Carlo methods are provided to
make the package capable of solving high-dimensional problems.
Author: Uwe Menzel
Maintainer: Uwe Menzel <uwemenzel@gmail.com>
Diff between EMT versions 1.3 dated 2023-02-06 and 1.3.1 dated 2024-03-26
DESCRIPTION | 8 +++--- MD5 | 8 +++--- NEWS | 9 ++++--- R/EMT.R | 10 ++------ man/EMT-package.Rd | 66 ++++++++++++++++++++++++++--------------------------- 5 files changed, 49 insertions(+), 52 deletions(-)
Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images.
Contains over 3000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.
Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks.
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlatio [...truncated...]
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat versions 3.0-7 dated 2023-10-30 and 3.0-8 dated 2024-03-26
DESCRIPTION | 16 +++++++------- MD5 | 32 +++++++++++++++------------- NEWS | 14 ++++++++++++ build/vignette.rds |binary inst/doc/bugfixes.Rnw | 36 ++++++++++++++++++++++++++++++- inst/doc/bugfixes.pdf |binary inst/doc/datasets.pdf |binary inst/doc/fv.pdf |binary inst/doc/getstart.pdf |binary inst/doc/packagesizes.txt | 1 inst/doc/replicated.pdf |binary inst/doc/shapefiles.R |only inst/doc/shapefiles.Rnw |only inst/doc/shapefiles.pdf |only inst/doc/updates.Rnw | 52 ++++++++++++++++++++++++++++++++++++++++++---- inst/doc/updates.pdf |binary vignettes/bugfixes.Rnw | 36 ++++++++++++++++++++++++++++++- vignettes/shapefiles.Rnw |only vignettes/updates.Rnw | 52 ++++++++++++++++++++++++++++++++++++++++++---- 19 files changed, 205 insertions(+), 34 deletions(-)
Title: Multiscale Geographically Weighted Negative Binomial Regression
Description: Fits a geographically weighted regression model with different scales
for each covariate. Uses the negative binomial distribution as default,
but also accepts the normal, Poisson, or logistic distributions.
Can fit the global versions of each regression and also the geographically
weighted alternatives with only one scale, since they are all particular
cases of the multiscale approach.
Hanchen Yu (2024). "Exploring Multiscale Geographically Weighted Negative Binomial Regression", Annals of the American Association of Geographers <doi:10.1080/24694452.2023.2289986>.
Fotheringham AS, Yang W, Kang W (2017). "Multiscale Geographically Weighted Regression (MGWR)", Annals of the American Association of Geographers <doi:10.1080/24694452.2017.1352480>.
Da Silva AR, Rodrigues TCV (2014). "Geographically Weighted Negative Binomial Regression - incorporating overdispersion", Statistics and Computing <doi:10.1007/s11222-013-9401-9>.
Author: Juliana Rosa [aut, cre],
Jessica Vasconcelos [aut],
Alan da Silva [aut]
Maintainer: Juliana Rosa <julianamrosa00@gmail.com>
Diff between mgwnbr versions 0.1.0 dated 2024-02-23 and 0.2.0 dated 2024-03-26
DESCRIPTION | 12 ++++++------ MD5 | 9 +++++---- NEWS.md | 4 ++-- R/globals.R |only R/mgwnbr.R | 50 ++++++++++++++++++++++++++++++++++++++++++-------- man/mgwnbr.Rd | 2 ++ 6 files changed, 57 insertions(+), 20 deletions(-)
Title: Lomb-Scargle Periodogram
Description: Computes the Lomb-Scargle Periodogram and actogram for evenly or unevenly sampled time series. Includes a randomization procedure to obtain exact p-values. Partially based on C original by Press et al. (Numerical Recipes) and the Python module Astropy. For more information see Ruf, T. (1999). The Lomb-Scargle periodogram in biological rhythm research: analysis of incomplete and unequally spaced time-series. Biological Rhythm Research, 30(2), 178-201.
Author: Thomas Ruf [aut, cre]
Maintainer: Thomas Ruf <Thomas.P.Ruf@me.com>
Diff between lomb versions 2.2.0 dated 2024-01-26 and 2.5.0 dated 2024-03-26
lomb-2.2.0/lomb/R/lspfunctions.R |only lomb-2.5.0/lomb/DESCRIPTION | 23 +++++++----- lomb-2.5.0/lomb/MD5 | 61 ++++++++++++++++++++++++--------- lomb-2.5.0/lomb/NAMESPACE | 2 + lomb-2.5.0/lomb/R/actogram.R |only lomb-2.5.0/lomb/R/getpeaks.R |only lomb-2.5.0/lomb/R/ggamma.R |only lomb-2.5.0/lomb/R/levopt.R |only lomb-2.5.0/lomb/R/lsp.R |only lomb-2.5.0/lomb/R/makedf.R |only lomb-2.5.0/lomb/R/pbaluev.R |only lomb-2.5.0/lomb/R/pershow.R |only lomb-2.5.0/lomb/R/photoperiod.R |only lomb-2.5.0/lomb/R/plot.lsp.R |only lomb-2.5.0/lomb/R/randlsp.R |only lomb-2.5.0/lomb/R/summary.lsp.R |only lomb-2.5.0/lomb/R/summary.randlsp.R |only lomb-2.5.0/lomb/R/theme_lsp.R |only lomb-2.5.0/lomb/build |only lomb-2.5.0/lomb/data/caradat.RData |only lomb-2.5.0/lomb/data/deerdat.RData |only lomb-2.5.0/lomb/data/ibex.RData |binary lomb-2.5.0/lomb/data/layla.RData |only lomb-2.5.0/lomb/inst/doc |only lomb-2.5.0/lomb/man/actogram.Rd |only lomb-2.5.0/lomb/man/caradat.Rd |only lomb-2.5.0/lomb/man/deerdat.Rd |only lomb-2.5.0/lomb/man/getpeaks.Rd | 2 - lomb-2.5.0/lomb/man/ggamma.Rd | 2 - lomb-2.5.0/lomb/man/layla.Rd |only lomb-2.5.0/lomb/man/levopt.Rd | 2 - lomb-2.5.0/lomb/man/lomb-package.Rd | 6 +-- lomb-2.5.0/lomb/man/lsp.Rd | 2 - lomb-2.5.0/lomb/man/makedf.Rd |only lomb-2.5.0/lomb/man/pbaluev.Rd | 3 - lomb-2.5.0/lomb/man/pershow.Rd | 2 - lomb-2.5.0/lomb/man/photoperiod.Rd |only lomb-2.5.0/lomb/man/plot.lsp.Rd | 2 - lomb-2.5.0/lomb/man/randlsp.Rd | 2 - lomb-2.5.0/lomb/man/summary.lsp.Rd | 2 - lomb-2.5.0/lomb/man/summary.randlsp.Rd | 2 - lomb-2.5.0/lomb/vignettes |only 42 files changed, 75 insertions(+), 38 deletions(-)
Title: Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
Description: Analyze and model heteroskedastic behavior in financial time series.
Author: Diethelm Wuertz [aut] ,
Yohan Chalabi [aut],
Tobias Setz [aut],
Martin Maechler [aut] ,
Chris Boudt [ctb],
Pierre Chausse [ctb],
Michal Miklovac [ctb],
Georgi N. Boshnakov [aut, cre]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between fGarch versions 4032.91 dated 2024-02-01 and 4033.92 dated 2024-03-26
DESCRIPTION | 9 ++-- MD5 | 20 +++++----- NAMESPACE | 1 NEWS.md | 31 +++++++++++++++- R/methods-plot.R | 96 ++++++++++++++++++++++++++++++++++++++++++--------- build/partial.rdb |binary inst/NEWS.Rd | 40 +++++++++++++++------ inst/_pkgdown.yml | 2 + inst/pkgdown.yml | 2 - man/VaR.Rd | 32 ++++++++++++++++- man/methods-plot.Rd | 97 ++++++++++++++++++++++++++++++++-------------------- 11 files changed, 247 insertions(+), 83 deletions(-)
Title: Spatial Price Level Comparisons
Description: Price comparisons within or between countries provide an overall measure of the relative difference in prices, often denoted as price levels. This package provides index number methods for such price comparisons (e.g., The World Bank, 2011, <doi:10.1596/978-0-8213-9728-2>). Moreover, it contains functions for sampling and characterizing price data.
Author: Sebastian Weinand [aut, cre]
Maintainer: Sebastian Weinand <s.weinand90@googlemail.com>
Diff between pricelevels versions 1.0.2 dated 2024-02-08 and 1.1.0 dated 2024-03-26
DESCRIPTION | 6 MD5 | 43 +- NAMESPACE | 7 NEWS.md | 10 R/cpd.R | 101 +++--- R/geks.R | 5 R/gerardi.r |only R/gkhamis.r | 227 ++++++++++++-- R/helper.r | 4 R/pricelevels.R | 66 +++- R/sysdata.rda |binary README.md | 10 inst/doc/pricelevels-intro.R | 17 - inst/doc/pricelevels-intro.Rmd | 85 +++-- inst/doc/pricelevels-intro.html | 543 +++++++++++++++++++--------------- man/cpd.Rd | 26 - man/gerardi.Rd |only man/gkhamis.Rd | 51 ++- tests/testthat/test-bilateral.index.R | 165 ++++------ tests/testthat/test-cpd.R | 16 - tests/testthat/test-geks.R | 66 ++-- tests/testthat/test-gerardi.R |only tests/testthat/test-gkhamis.R | 135 +++----- vignettes/pricelevels-intro.Rmd | 85 +++-- 24 files changed, 1025 insertions(+), 643 deletions(-)
Title: Easy Data Wrangling and Statistical Transformations
Description: A lightweight package to assist in key steps involved in any data
analysis workflow: (1) wrangling the raw data to get it in the needed form,
(2) applying preprocessing steps and statistical transformations, and
(3) compute statistical summaries of data properties and distributions.
It is also the data wrangling backend for packages in 'easystats' ecosystem.
References: Patil et al. (2022) <doi:10.21105/joss.04684>.
Author: Indrajeet Patil [aut] ,
Etienne Bacher [aut, cre] ,
Dominique Makowski [aut] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Brenton M. Wiernik [aut] ,
Remi Theriault [ctb] ,
Thomas J. Faulkenberry [rev],
Robert Garrett [rev]
Maintainer: Etienne Bacher <etienne.bacher@protonmail.com>
Diff between datawizard versions 0.9.1 dated 2023-12-21 and 0.10.0 dated 2024-03-26
DESCRIPTION | 10 MD5 | 120 +-- NAMESPACE | 13 NEWS.md | 29 R/adjust.R | 36 - R/assign_labels.R | 10 R/categorize.R | 112 +-- R/data_arrange.R | 6 R/data_modify.R | 300 +++++--- R/data_partition.R | 12 R/data_read.R | 14 R/data_replicate.R |only R/data_summary.R |only R/data_tabulate.R | 240 ++++++ R/data_to_long.R | 15 R/data_to_wide.R | 50 - R/data_xtabulate.R |only R/normalize.R | 12 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/selection_syntax.html | 182 +++++ inst/doc/standardize_data.html | 186 +++++ inst/doc/tidyverse_translation.html | 182 +++++ man/data_modify.Rd | 48 + man/data_partition.Rd | 3 man/data_replicate.Rd |only man/data_summary.Rd |only man/data_tabulate.Rd | 96 ++ man/data_to_long.Rd | 8 man/data_to_wide.Rd | 16 man/datawizard-package.Rd | 1 tests/testthat/_snaps/contr.deviation.md | 46 - tests/testthat/_snaps/data_codebook.md | 854 ++++++++++++------------ tests/testthat/_snaps/data_modify.md | 182 ++--- tests/testthat/_snaps/data_partition.md | 272 +++---- tests/testthat/_snaps/data_peek.md | 86 +- tests/testthat/_snaps/data_read.md | 240 +++--- tests/testthat/_snaps/data_rescale.md | 86 +- tests/testthat/_snaps/data_seek.md | 34 tests/testthat/_snaps/data_separate.md | 308 ++++---- tests/testthat/_snaps/data_summary.md |only tests/testthat/_snaps/data_tabulate.md | 402 +++++++++++ tests/testthat/_snaps/data_to_factor.md | 168 ++-- tests/testthat/_snaps/data_to_long.md | 26 tests/testthat/_snaps/data_to_numeric.md | 86 +- tests/testthat/_snaps/demean.md | 138 +-- tests/testthat/_snaps/describe_distribution.md | 54 - tests/testthat/_snaps/empty-dataframe.md | 68 - tests/testthat/_snaps/means_by_group.md | 344 ++++----- tests/testthat/_snaps/normalize.md | 26 tests/testthat/_snaps/print.dw_transformer.md | 256 +++---- tests/testthat/_snaps/ranktransform.md | 26 tests/testthat/_snaps/rescale_weights.md | 204 ++--- tests/testthat/_snaps/reshape_ci.md | 56 - tests/testthat/_snaps/skewness-kurtosis.md | 192 ++--- tests/testthat/_snaps/smoothness.md | 22 tests/testthat/_snaps/text_format.md | 110 +-- tests/testthat/_snaps/windows/means_by_group.md | 68 - tests/testthat/_snaps/winsorization.md | 14 tests/testthat/test-data_modify.R | 60 + tests/testthat/test-data_reorder.R | 11 tests/testthat/test-data_replicate.R |only tests/testthat/test-data_summary.R |only tests/testthat/test-data_tabulate.R | 200 +++++ 65 files changed, 3989 insertions(+), 2353 deletions(-)
Title: Interact with the 'Databrary.org' API
Description: 'Databrary.org' is a restricted access repository for research data, especially video and audio.
This package provides commands to interact with the data stored on 'Databrary.org'.
Author: Rick O. Gilmore [aut, cre, cph],
Jeffrey Spies [aut],
National Science Foundation OAC-2032713 [fnd],
National Institutes of Health R01HD094830 [fnd]
Maintainer: Rick O. Gilmore <rog1@psu.edu>
Diff between databraryr versions 0.6.2 dated 2024-03-15 and 0.6.3 dated 2024-03-26
DESCRIPTION | 6 MD5 | 106 + NAMESPACE | 3 NEWS.md | 12 R/download_session_asset.R | 7 R/download_session_asset_fr_df.R |only R/download_session_assets_fr_df.R |only R/download_session_csv.R | 23 R/download_session_zip.R | 2 R/download_video.R | 2 R/get_db_stats.R | 90 - R/get_party_by_id.R | 2 R/get_session_by_id.R | 2 R/get_session_by_name.R | 2 R/get_volume_by_id.R | 2 R/list_authorized_investigators.R | 2 R/list_individual_sponsors.R | 2 R/list_party_affiliates.R | 2 R/list_party_sponsors.R | 2 R/list_party_volumes.R | 2 R/list_session_activity.R | 2 R/list_session_assets.R | 208 +-- R/list_volume_activity.R | 2 R/list_volume_assets.R | 2 R/list_volume_excerpts.R | 2 R/list_volume_funding.R | 29 R/list_volume_links.R | 2 R/list_volume_owners.R | 2 R/list_volume_session_assets.R |only R/list_volume_sessions.R | 2 R/list_volume_tags.R | 2 R/search_for_funder.R | 2 R/search_for_keywords.R | 2 R/search_for_tags.R | 2 R/utils.R | 6 README.md | 11 build/vignette.rds |binary inst/doc/accessing-data.R | 5 inst/doc/accessing-data.Rmd | 34 inst/doc/accessing-data.html | 1109 ++++++++++---------- inst/doc/authorized-users.Rmd | 13 inst/doc/authorized-users.html | 12 inst/doc/databrary.Rmd | 15 inst/doc/databrary.html | 253 +--- man/download_session_asset.Rd | 2 man/download_session_asset_fr_df.Rd |only man/download_session_assets_fr_df.Rd |only man/list_session_assets.Rd | 22 man/list_volume_funding.Rd | 4 man/list_volume_session_assets.Rd |only tests/testthat/test-download_session_asset.R | 4 tests/testthat/test-download_session_assets_fr_df.R |only tests/testthat/test-download_session_csv.R | 14 tests/testthat/test-get_video_stats.R | 8 tests/testthat/test-list_volume_session_assets.R |only vignettes/accessing-data.Rmd | 34 vignettes/authorized-users.Rmd | 13 vignettes/databrary.Rmd | 15 58 files changed, 1076 insertions(+), 1026 deletions(-)
Title: Motion Trajectory Analysis
Description: Methods for analyzing (cell) motion in two or three dimensions.
Available measures include displacement, confinement ratio, autocorrelation,
straightness, turning angle, and fractal dimension. Measures can be applied to entire tracks,
steps, or subtracks with varying length. While the methodology has been developed for
cell trajectory analysis, it is applicable to anything that moves including animals,
people, or vehicles.
Some of the methodology implemented in this packages was described by:
Beauchemin, Dixit, and Perelson (2007) <doi:10.4049/jimmunol.178.9.5505>,
Beltman, Maree, and de Boer (2009) <doi:10.1038/nri2638>,
Gneiting and Schlather (2004) <doi:10.1137/S0036144501394387>,
Mokhtari, Mech, Zitzmann, Hasenberg, Gunzer, and Figge (2013) <doi:10.1371/journal.pone.0080808>,
Moreau, Lemaitre, Terriac, Azar, Piel, Lennon-Dumenil, and Bousso (2012) <doi:10.1016/j.immuni.2012.05.014>,
Textor, Peixoto, Henrickson, Sinn, von Andrian, and Westermann (2011) [...truncated...]
Author: Johannes Textor [aut, cre],
Katharina Dannenberg [aut],
Jeffrey Berry [aut],
Gerhard Burger [aut],
Annie Liu [aut],
Mark Miller [aut],
Inge Wortel [aut]
Maintainer: Johannes Textor <johannes.textor@gmx.de>
Diff between celltrackR versions 1.1.0 dated 2022-03-21 and 1.2.0 dated 2024-03-26
DESCRIPTION | 24 MD5 | 77 - NAMESPACE | 4 NEWS.md | 27 R/celltrackR-package.R | 1 R/data-structures.R | 2 R/datasets.R |only R/functions.R | 28 R/immunemap-integration.R |only R/track-set-transformations.R | 9 build/vignette.rds |binary inst/CITATION | 4 inst/doc/QC.R | 108 +- inst/doc/QC.html | 1542 +++++++++++++++++++----------- inst/doc/ana-methods.R | 34 inst/doc/ana-methods.html | 1319 ++++++++++++++++--------- inst/doc/clustering.R | 7 inst/doc/clustering.Rmd | 9 inst/doc/clustering.html | 667 +++++++++--- inst/doc/data-QC.R | 6 inst/doc/data-QC.html | 935 +++++++++++------- inst/doc/reading-converting-data.R | 6 inst/doc/reading-converting-data.html | 700 +++++++++---- inst/doc/simulation.html | 1023 ++++++++++++------- inst/extdata/immunemap.json |only man/BCells.Rd | 80 - man/Neutrophils.Rd | 87 - man/ReadImmuneMap.Rd |only man/TCells.Rd | 80 - man/aggregate.tracks.Rd | 28 man/celltrackR.Rd | 1 man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-4-2.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/get.immap.metadata.Rd |only man/repairGaps.Rd | 9 tests/testthat/immunemap.json |only tests/testthat/testClusterFunctions.R | 14 tests/testthat/testImmuneMapIntegration.R |only vignettes/clustering.Rmd | 9 43 files changed, 4408 insertions(+), 2432 deletions(-)
Title: Measure Climate Scenario Alignment of Corporate Loans
Description: These tools help you to assess if a corporate lending
portfolio aligns with climate goals. They summarize key climate
indicators attributed to the portfolio (e.g. production, emission
factors), and calculate alignment targets based on climate scenarios.
They implement in R the last step of the free software 'PACTA' (Paris
Agreement Capital Transition Assessment;
<https://www.transitionmonitor.com/>). Financial institutions use 'PACTA'
to study how their capital allocation decisions align with climate
change mitigation goals.
Author: Alex Axthelm [aut, cre] ,
Jackson Hoffart [aut, ctr] ,
Mauro Lepore [aut, ctr] ,
Klaus Hogedorn [aut],
Nicky Halterman [aut],
Rocky Mountain Institute [cph, fnd]
Maintainer: Alex Axthelm <aaxthelm@rmi.org>
Diff between r2dii.analysis versions 0.3.0 dated 2023-10-23 and 0.4.0 dated 2024-03-26
r2dii.analysis-0.3.0/r2dii.analysis/R/join_ald_scenario.R |only r2dii.analysis-0.3.0/r2dii.analysis/man/join_ald_scenario.Rd |only r2dii.analysis-0.3.0/r2dii.analysis/tests/testthat/_snaps/join_ald_scenario.md |only r2dii.analysis-0.3.0/r2dii.analysis/tests/testthat/test-join_ald_scenario.R |only r2dii.analysis-0.4.0/r2dii.analysis/DESCRIPTION | 9 r2dii.analysis-0.4.0/r2dii.analysis/MD5 | 42 +-- r2dii.analysis-0.4.0/r2dii.analysis/NAMESPACE | 1 r2dii.analysis-0.4.0/r2dii.analysis/NEWS.md | 7 r2dii.analysis-0.4.0/r2dii.analysis/R/join_abcd_scenario.R | 112 +++++++-- r2dii.analysis-0.4.0/r2dii.analysis/R/summarize_weighted_production.R | 80 +++---- r2dii.analysis-0.4.0/r2dii.analysis/R/target_market_share.R | 113 ++++----- r2dii.analysis-0.4.0/r2dii.analysis/R/target_sda.R | 79 ++---- r2dii.analysis-0.4.0/r2dii.analysis/R/utils.R | 66 +---- r2dii.analysis-0.4.0/r2dii.analysis/README.md | 114 ++++------ r2dii.analysis-0.4.0/r2dii.analysis/inst/WORDLIST | 2 r2dii.analysis-0.4.0/r2dii.analysis/man/join_abcd_scenario.Rd | 30 +- r2dii.analysis-0.4.0/r2dii.analysis/man/summarize_weighted_production.Rd | 44 +-- r2dii.analysis-0.4.0/r2dii.analysis/man/target_market_share.Rd | 79 +++--- r2dii.analysis-0.4.0/r2dii.analysis/man/target_sda.Rd | 69 ++---- r2dii.analysis-0.4.0/r2dii.analysis/tests/testthat/_snaps/join_abcd_scenario.md | 6 r2dii.analysis-0.4.0/r2dii.analysis/tests/testthat/helper-fake_data.R | 24 -- r2dii.analysis-0.4.0/r2dii.analysis/tests/testthat/test-join_abcd_scenario.R | 63 +++++ r2dii.analysis-0.4.0/r2dii.analysis/tests/testthat/test-summarize_weighted_production.R | 2 r2dii.analysis-0.4.0/r2dii.analysis/tests/testthat/test-target_market_share.R | 50 ++++ 24 files changed, 511 insertions(+), 481 deletions(-)
More information about r2dii.analysis at CRAN
Permanent link
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Oliver Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.4 dated 2024-02-15 and 1.5 dated 2024-03-26
DESCRIPTION | 6 MD5 | 102 ++--- NAMESPACE | 3 NEWS.md | 33 + R/RcppExports.R | 8 R/class-comment.R | 80 +--- R/class-workbook-wrappers.R | 264 +++++++++++---- R/class-workbook.R | 443 ++++++++++++++++++++------ R/dates.R | 2 R/helper-functions.R | 218 ++++++++++++ R/openxlsx2-package.R | 4 R/pugixml.R | 4 R/utils.R | 92 ++++- R/write.R | 199 +++++++---- R/write_xlsx.R | 22 - build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/Update-from-openxlsx.html | 2 inst/doc/conditional-formatting.html | 32 - inst/doc/openxlsx2.html | 2 inst/doc/openxlsx2_charts_manual.html | 4 inst/doc/openxlsx2_formulas_manual.html | 2 inst/doc/openxlsx2_style_manual.R | 2 inst/doc/openxlsx2_style_manual.Rmd | 2 inst/doc/openxlsx2_style_manual.html | 10 man/col_widths-wb.Rd | 2 man/convert_date.Rd | 12 man/openxlsx2-deprecated.Rd | 2 man/openxlsx2_options.Rd | 2 man/wbWorkbook.Rd | 168 +++++++++ man/wb_add_comment.Rd | 3 man/wb_add_data.Rd | 3 man/wb_add_data_table.Rd | 28 + man/wb_add_formula.Rd | 18 - man/wb_add_thread.Rd | 3 man/wb_dims.Rd | 6 man/wb_page_setup.Rd | 49 ++ man/write_data.Rd | 3 man/write_datatable.Rd | 6 man/write_xlsx.Rd | 8 src/RcppExports.cpp | 30 + src/helper_functions.cpp | 168 +++++++++ tests/testthat/test-class-comment.R | 8 tests/testthat/test-class-workbook-wrappers.R | 25 + tests/testthat/test-class-workbook.R | 51 ++ tests/testthat/test-formulas.R | 48 ++ tests/testthat/test-helper-functions.R | 4 tests/testthat/test-options.R | 27 + tests/testthat/test-page_setup.R | 19 - tests/testthat/test-utils.R | 71 ++++ tests/testthat/test-write.R | 157 +++++++++ vignettes/openxlsx2_style_manual.Rmd | 2 52 files changed, 2044 insertions(+), 419 deletions(-)
Title: Inflators for Australian Policy Analysis
Description: Using Australian Bureau of Statistics indices, provides functions
that convert historical, nominal statistics to real, contemporary values
without worrying about date input quality, performance, or the ABS catalogue.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between grattanInflators versions 0.5.0 dated 2023-12-01 and 0.5.1 dated 2024-03-26
DESCRIPTION | 6 MD5 | 40 +-- NEWS.md | 48 ++- R/Inflate.R | 409 ++++++++++++++++---------------- R/YearMonthSplit.R | 42 +-- R/check_input.R | 37 +- R/cpi_inflator.R | 445 ++++++++++++++++++----------------- R/fast_as_idate.R | 74 ++--- R/lf_inflator.R | 209 ++++++++-------- R/wage_inflator.R | 201 ++++++++------- inst/tinytest/test_cpi_inflator.R | 190 +++++++------- inst/tinytest/test_inflator_annual.R | 138 +++++----- inst/tinytest/test_lf_inflator.R | 37 +- man/lf_inflator.Rd | 135 +++++----- man/wage_inflator.Rd | 121 ++++----- src/SEXP2YearMonth.c | 9 src/check_input.c | 200 ++++++++++++++- src/grattanInflator.h | 8 src/idate_YearMonth.c | 43 ++- src/init.c | 6 src/minmaxDate.c | 213 ++-------------- 21 files changed, 1357 insertions(+), 1254 deletions(-)
More information about grattanInflators at CRAN
Permanent link
Title: Supervised Machine Learning for Textual Data Using Transformers
and 'Quanteda'
Description: Duct tape the 'quanteda' ecosystem (Benoit et al., 2018) <doi:10.21105/joss.00774> to modern Transformer-based text classification models (Wolf et al., 2020) <doi:10.18653/v1/2020.emnlp-demos.6>, in order to facilitate supervised machine learning for textual data. This package mimics the behaviors of 'quanteda.textmodels' and provides a function to setup the 'Python' environment to use the pretrained models from 'Hugging Face' <https://huggingface.co/>. More information: <doi:10.5117/CCR2023.1.003.CHAN>.
Author: Chung-hong Chan [aut, cre]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between grafzahl versions 0.0.8 dated 2023-04-12 and 0.0.11 dated 2024-03-26
DESCRIPTION | 18 ++++---- MD5 | 28 ++++++++---- NAMESPACE | 1 R/misc.R | 6 ++ R/setup.R | 92 +++++++++++++++++++++++++++++++---------- R/train.R | 15 +++--- build |only data/supported_model_types.rda |only inst/doc |only inst/grafzahl.yml | 7 +-- inst/grafzahl_gpu.yml | 4 - inst/python/cuda.py |only man/figures/grafzahl_logo.png |only man/grafzahl.Rd | 2 man/hydrate.Rd | 2 man/supported_model_types.Rd |only man/use_nonconda.Rd |only vignettes |only 18 files changed, 124 insertions(+), 51 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-15 0.9.0
Title: A Unified Time Series Event Detection Framework
Description: By analyzing time series, it is possible to observe significant changes in the behavior of observations that frequently characterize events. Events present themselves as anomalies, change points, or motifs. In the literature, there are several methods for detecting events. However, searching for a suitable time series method is a complex task, especially considering that the nature of events is often unknown. This work presents Harbinger, a framework for integrating and analyzing event detection methods. Harbinger contains several state-of-the-art methods described in Salles et al. (2020) <doi:10.5753/sbbd.2020.13626>.
Author: Eduardo Ogasawara [aut, ths, cre]
,
Antonio Castro [aut],
Antonio Mello [aut],
Ellen Paixao [aut],
Fernando Fraga [aut],
Heraldo Borges [aut],
Janio Lima [aut],
Jessica Souza [aut],
Lais Baroni [aut],
Lucas Tavares [aut],
Rebecca Salles [aut],
Diego [...truncated...]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between harbinger versions 1.0.737 dated 2023-11-11 and 1.0.747 dated 2024-03-26
harbinger-1.0.737/harbinger/R/har_conv1d.R |only harbinger-1.0.737/harbinger/R/har_lstm.R |only harbinger-1.0.737/harbinger/inst/python |only harbinger-1.0.737/harbinger/man/har_conv1d.Rd |only harbinger-1.0.737/harbinger/man/har_lstm.Rd |only harbinger-1.0.747/harbinger/DESCRIPTION | 131 +++++++------------------- harbinger-1.0.747/harbinger/MD5 | 22 +--- harbinger-1.0.747/harbinger/NAMESPACE | 9 - harbinger-1.0.747/harbinger/R/hcp_cf_arima.R | 5 harbinger-1.0.747/harbinger/R/hcp_cf_ets.R | 5 harbinger-1.0.747/harbinger/R/hcp_cf_lr.R | 5 harbinger-1.0.747/harbinger/R/hcp_garch.R | 2 harbinger-1.0.747/harbinger/R/mas.R |only harbinger-1.0.747/harbinger/README.md | 21 +++- harbinger-1.0.747/harbinger/man/mas.Rd |only 15 files changed, 70 insertions(+), 130 deletions(-)
Title: Generalized Extended Triangular Designs ('GETdesigns')
Description: Since their introduction by Bose and Nair (1939) <https://www.jstor.org/stable/40383923>, partially balanced incomplete block (PBIB) designs remain an important class of incomplete block designs. The concept of association scheme was used by Bose and Shimamoto (1952) <doi:10.1080/01621459.1952.10501161> for the classification of these designs. The constraint of resources always motivates the experimenter to advance towards PBIB designs, more specifically to higher associate class PBIB designs from balanced incomplete block designs. It is interesting to note that many times higher associate PBIB designs perform better than their counterpart lower associate PBIB designs for the same set of parameters v, b, r, k and lambda_i (i=1,2...m). This package contains functions named GETD() for generating m-associate (m>=2) class PBIB designs along with parameters (v, b, r, k and lambda_i, i = 1, 2,…,m) based on Generalized Triangular (GT) Association Scheme. It also calculates the [...truncated...]
Author: Mohd Harun [aut, ctb],
Cini Varghese [aut, ctb],
Ashutosh Dalal [aut, cre]
Maintainer: Ashutosh Dalal <ashutosh.dalal97@gmail.com>
Diff between GETdesigns versions 1.1.0 dated 2022-11-24 and 1.2.0 dated 2024-03-26
DESCRIPTION | 8 ++--- MD5 | 6 ++-- R/GETD.R | 88 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++--- man/GETD.Rd | 58 ++++++++++++++++++++------------------- 4 files changed, 121 insertions(+), 39 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-05 0.1.3.2
2022-03-28 0.1.2
2022-03-11 0.1.1
2022-01-28 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-26 1.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-26 0.1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-01 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-27 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-22 1.0.1
2019-05-16 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-06 0.2.5
2022-09-22 0.2.4
2022-02-16 0.2.1
2021-12-06 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-09 1.0.1
2020-05-29 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-02 1.0.2
2020-04-19 1.0.1
2020-03-23 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-26 0.1.0
Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between inputs and
outputs and extensive prebuilt widgets make it possible to build
beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre] ,
Joe Cheng [aut],
JJ Allaire [aut],
Carson Sievert [aut] ,
Barret Schloerke [aut] ,
Yihui Xie [aut],
Jeff Allen [aut],
Jonathan McPherson [aut],
Alan Dipert [aut],
Barbara Borges [aut],
Posit Software, PBC [cph, fnd],
jQuery [...truncated...]
Maintainer: Winston Chang <winston@posit.co>
Diff between shiny versions 1.8.0 dated 2023-11-17 and 1.8.1 dated 2024-03-26
shiny-1.8.0/shiny/inst/examples/08_html |only shiny-1.8.0/shiny/inst/www/shared/datatables/css/dataTables.extra.css |only shiny-1.8.1/shiny/DESCRIPTION | 42 shiny-1.8.1/shiny/MD5 | 169 shiny-1.8.1/shiny/NAMESPACE | 8 shiny-1.8.1/shiny/NEWS.md | 30 shiny-1.8.1/shiny/R/bind-cache.R | 2 shiny-1.8.1/shiny/R/bookmark-state.R | 2 shiny-1.8.1/shiny/R/bootstrap.R | 72 shiny-1.8.1/shiny/R/extended-task.R |only shiny-1.8.1/shiny/R/graph.R | 59 shiny-1.8.1/shiny/R/history.R | 2 shiny-1.8.1/shiny/R/input-action.R | 6 shiny-1.8.1/shiny/R/map.R | 3 shiny-1.8.1/shiny/R/mock-session.R | 28 shiny-1.8.1/shiny/R/react.R | 14 shiny-1.8.1/shiny/R/reactives.R | 4 shiny-1.8.1/shiny/R/runapp.R | 64 shiny-1.8.1/shiny/R/shiny-options.R | 2 shiny-1.8.1/shiny/R/shiny-package.R | 3 shiny-1.8.1/shiny/R/shiny.R | 169 shiny-1.8.1/shiny/R/shinyapp.R | 36 shiny-1.8.1/shiny/R/shinyui.R | 17 shiny-1.8.1/shiny/R/shinywrappers.R | 78 shiny-1.8.1/shiny/R/update-input.R | 14 shiny-1.8.1/shiny/R/utils.R | 10 shiny-1.8.1/shiny/README.md | 4 shiny-1.8.1/shiny/inst/examples-shiny |only shiny-1.8.1/shiny/inst/www/shared/datatables/css/dataTables.bootstrap.css | 457 shiny-1.8.1/shiny/inst/www/shared/datatables/images/sort_asc.png |binary shiny-1.8.1/shiny/inst/www/shared/datatables/images/sort_asc_disabled.png |binary shiny-1.8.1/shiny/inst/www/shared/datatables/images/sort_both.png |binary shiny-1.8.1/shiny/inst/www/shared/datatables/images/sort_desc.png |binary shiny-1.8.1/shiny/inst/www/shared/datatables/images/sort_desc_disabled.png |binary shiny-1.8.1/shiny/inst/www/shared/datatables/js/dataTables.bootstrap.js | 138 shiny-1.8.1/shiny/inst/www/shared/datatables/js/jquery.dataTables.min.js | 342 shiny-1.8.1/shiny/inst/www/shared/shiny-autoreload.js | 2 shiny-1.8.1/shiny/inst/www/shared/shiny-showcase.css | 2 shiny-1.8.1/shiny/inst/www/shared/shiny-showcase.js | 2 shiny-1.8.1/shiny/inst/www/shared/shiny-testmode.js | 2 shiny-1.8.1/shiny/inst/www/shared/shiny.js |11670 ++++++---- shiny-1.8.1/shiny/inst/www/shared/shiny.js.map | 8 shiny-1.8.1/shiny/inst/www/shared/shiny.min.css | 4 shiny-1.8.1/shiny/inst/www/shared/shiny.min.js | 19 shiny-1.8.1/shiny/inst/www/shared/shiny.min.js.map | 8 shiny-1.8.1/shiny/inst/www/shared/shiny_scss/shiny.bootstrap5.scss | 8 shiny-1.8.1/shiny/inst/www/shared/shiny_scss/shiny.scss | 1 shiny-1.8.1/shiny/man/ExtendedTask.Rd |only shiny-1.8.1/shiny/man/MockShinySession.Rd | 27 shiny-1.8.1/shiny/man/actionButton.Rd | 5 shiny-1.8.1/shiny/man/bindCache.Rd | 2 shiny-1.8.1/shiny/man/debounce.Rd | 2 shiny-1.8.1/shiny/man/getQueryString.Rd | 2 shiny-1.8.1/shiny/man/onFlush.Rd | 83 shiny-1.8.1/shiny/man/renderDataTable.Rd | 19 shiny-1.8.1/shiny/man/req.Rd | 7 shiny-1.8.1/shiny/man/runExample.Rd | 14 shiny-1.8.1/shiny/man/session.Rd | 2 shiny-1.8.1/shiny/man/shiny-package.Rd | 46 shiny-1.8.1/shiny/man/shinyOptions.Rd | 2 shiny-1.8.1/shiny/man/shinyUI.Rd | 2 shiny-1.8.1/shiny/man/updateActionButton.Rd | 10 shiny-1.8.1/shiny/man/updateQueryString.Rd | 2 shiny-1.8.1/shiny/tests/testthat/_snaps/tabPanel.md | 136 shiny-1.8.1/shiny/tests/testthat/test-bind-cache.R | 2 shiny-1.8.1/shiny/tests/testthat/test-mock-session.R | 2 shiny-1.8.1/shiny/tests/testthat/test-reactivity.r | 38 shiny-1.8.1/shiny/tests/testthat/test-reactlog.R | 13 shiny-1.8.1/shiny/tests/testthat/test-tabPanel.R | 2 shiny-1.8.1/shiny/tests/testthat/test-test-server.R | 96 70 files changed, 9511 insertions(+), 4504 deletions(-)
Title: Site Occupancy Modeling for Environmental DNA Metabarcoding
Description: Fits multispecies site occupancy models to environmental DNA
metabarcoding data collected using spatially-replicated survey design.
Model fitting results can be used to evaluate and compare the effectiveness
of species detection to find an efficient survey design.
Reference: Fukaya et al. (2022) <doi:10.1111/2041-210X.13732>.
Author: Keiichi Fukaya [aut, cre],
Ken Kellner [cph]
Maintainer: Keiichi Fukaya <fukayak99@gmail.com>
Diff between occumb versions 1.0.3 dated 2024-01-08 and 1.1.0 dated 2024-03-26
DESCRIPTION | 10 MD5 | 71 - NAMESPACE | 1 NEWS.md | 30 R/fish.R | 17 R/fish_raw.R | 17 R/get_posterior.R | 24 R/gof.R | 14 R/occumb.R | 44 - R/occumbData.R | 16 R/predict.R |only R/summary.R | 16 R/utility.R | 344 ++++---- README.md | 6 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 5 inst/doc/model_specification.R | 4 inst/doc/model_specification.Rmd | 132 +-- inst/doc/model_specification.html | 332 +++++++- inst/doc/occumb.R | 350 +++++++- inst/doc/occumb.Rmd | 418 +++++++++- inst/doc/occumb.html | 1513 +++++++++++++++++++++++++------------- man/eval_util_L.Rd | 96 +- man/eval_util_R.Rd | 132 +-- man/fish.Rd | 16 man/fish_raw.Rd | 16 man/get_posterior.Rd | 24 man/gof.Rd | 14 man/list_cond_L.Rd | 25 man/list_cond_R.Rd | 41 - man/occumb.Rd | 44 - man/occumbData.Rd | 16 man/predict-occumbFit-method.Rd |only tests/testthat/test-predict.R |only tests/testthat/test-utility.R | 437 ++++++++++ vignettes/model_specification.Rmd | 132 +-- vignettes/occumb.Rmd | 418 +++++++++- 38 files changed, 3450 insertions(+), 1325 deletions(-)
Title: Bindings to the 'Geospatial Data Abstraction Library' Raster API
Description: Interface to the Raster API of the 'Geospatial Data Abstraction
Library' ('GDAL', <https://gdal.org>). Bindings are implemented in an
exposed C++ class encapsulating a 'GDALDataset' and its raster band
objects, along with several stand-alone functions. These support manual
creation of uninitialized datasets, creation from existing raster as
template, read/set dataset parameters, low level I/O, color tables, raster
attribute tables, virtual raster (VRT), and 'gdalwarp' wrapper for
reprojection and mosaicing. Includes 'GDAL' algorithms ('dem_proc()',
'polygonize()', 'rasterize()', etc.), and functions for coordinate
transformation and spatial reference systems. Calling signatures resemble
the native C, C++ and Python APIs provided by the 'GDAL' project. Includes
raster 'calc()' to evaluate a given R expression on a layer or stack of
layers, with pixel x/y available as variables in the expression; and raster
'combine()' to identify and count unique pixel combinations across multiple [...truncated...]
Author: Chris Toney [aut, cre] ,
Frank Warmerdam [ctb, cph] ,
Even Rouault [ctb, cph] ,
Marius Appel [ctb, cph] ,
Daniel James [ctb, cph] ,
Peter Dimov [ctb, cph]
Maintainer: Chris Toney <chris.toney@usda.gov>
Diff between gdalraster versions 1.9.0 dated 2024-02-25 and 1.10.0 dated 2024-03-26
DESCRIPTION | 20 MD5 | 199 +- NEWS.md | 45 R/RcppExports.R | 714 +++++-- R/cmb_table.R | 85 R/display.R | 576 +++--- R/gdal_helpers.R | 324 +-- R/gdal_rat.R | 328 +-- R/gdalraster.R | 42 R/gdalraster_proc.R | 1964 +++++++++++---------- R/geom.R | 252 +- R/proj.R | 62 R/running_stats.R | 24 R/zzz.R | 81 README.md | 28 build/vignette.rds |binary configure | 220 +- configure.ac | 168 + inst/doc/gdal-config-quick-ref.html | 2 inst/doc/raster-api-tutorial.html | 2 inst/doc/raster-attribute-tables.html | 108 - man/CmbTable-class.Rd | 41 man/DEFAULT_DEM_PROC.Rd | 18 man/DEFAULT_NODATA.Rd | 2 man/GDALRaster-class.Rd | 18 man/addFilesInZip.Rd | 2 man/bandCopyWholeRaster.Rd | 8 man/bbox_from_wkt.Rd | 4 man/bbox_intersect.Rd | 6 man/buildRAT.Rd | 8 man/buildVRT.Rd | 7 man/calc.Rd | 64 man/combine.Rd | 9 man/copyDatasetFiles.Rd | 2 man/create.Rd | 2 man/createColorRamp.Rd | 2 man/createCopy.Rd | 14 man/dem_proc.Rd | 8 man/fillNodata.Rd | 8 man/footprint.Rd | 2 man/g_buffer.Rd | 4 man/g_transform.Rd |only man/gdal_formats.Rd | 27 man/gdalraster-package.Rd | 66 man/geos_version.Rd |only man/has_geos.Rd | 4 man/ogr2ogr.Rd |only man/ogrinfo.Rd |only man/polygonize.Rd | 9 man/pop_error_handler.Rd |only man/proj_networking.Rd | 2 man/proj_search_paths.Rd | 2 man/proj_version.Rd | 3 man/push_error_handler.Rd |only man/rasterFromRaster.Rd | 3 man/rasterToVRT.Rd | 15 man/rasterize.Rd | 7 man/renameDataset.Rd | 2 man/sieveFilter.Rd | 9 man/transform_xy.Rd | 4 man/translate.Rd | 11 man/vsi_copy_file.Rd | 6 man/vsi_curl_clear_cache.Rd | 2 man/vsi_get_disk_free_space.Rd |only man/vsi_get_fs_options.Rd |only man/vsi_get_fs_prefixes.Rd |only man/vsi_rename.Rd | 1 man/vsi_stat.Rd | 4 man/vsi_supports_rnd_write.Rd |only man/vsi_supports_seq_write.Rd |only man/vsi_sync.Rd | 6 man/vsi_unlink_batch.Rd | 2 man/warp.Rd | 7 src/RcppExports.cpp | 277 ++- src/cmb_table.cpp | 235 +- src/cmb_table.h | 83 src/gdal_exp.cpp | 2832 ++++++++++++++++++------------- src/gdal_vsi.cpp | 516 +++-- src/gdalraster.cpp | 2448 +++++++++++++------------- src/gdalraster.h | 431 ++-- src/geos_wkt.cpp | 993 ++++++---- src/geos_wkt.h | 8 src/ogr_util.cpp | 559 +++--- src/ogr_util.h | 18 src/progress_r.cpp | 2 src/rcpp_util.cpp | 30 src/rcpp_util.h | 6 src/running_stats.cpp | 154 - src/running_stats.h | 44 src/transform.cpp | 335 +-- src/wkt_conv.cpp | 415 ++-- tests/testthat/test-CmbTable-class.R | 22 tests/testthat/test-GDALRaster-class.R | 561 +++--- tests/testthat/test-RunningStats-class.R | 50 tests/testthat/test-display.R | 90 tests/testthat/test-gdal_exp.R | 520 +++-- tests/testthat/test-gdal_helpers.R | 48 tests/testthat/test-gdal_rat.R | 64 tests/testthat/test-gdal_vsi.R | 143 - tests/testthat/test-gdalraster_proc.R | 689 +++---- tests/testthat/test-geom.R | 78 tests/testthat/test-geos_wkt.R | 153 + tests/testthat/test-ogr_util.R | 36 tests/testthat/test-proj.R | 16 tests/testthat/test-transform.R | 38 tests/testthat/test-wkt_conv.R | 73 106 files changed, 9969 insertions(+), 7663 deletions(-)
Title: Search and Retrieve Data from Eurostat Database
Description: Eurostat is the statistical office of the European Union and provides high quality statistics for Europe.
Large set of the data is disseminated through the Eurostat database (<https://ec.europa.eu/eurostat/web/main/data/database>).
The tools are using the REST API with the Statistical Data and Metadata eXchange (SDMX) Web Services
(<https://wikis.ec.europa.eu/pages/viewpage.action?pageId=44165555>) to search and download data from
the Eurostat database using the SDMX standard.
Author: Matyas Meszaros [aut, cre],
Sebastian Weinand [ctb]
Maintainer: Matyas Meszaros <matyas.meszaros@ec.europa.eu>
Diff between restatapi versions 0.22.5 dated 2024-01-08 and 0.23.1 dated 2024-03-26
DESCRIPTION | 8 ++-- MD5 | 70 ++++++++++++++++++++--------------------- NEWS.md | 36 ++++++++++++++++++--- R/clean_restatapi_cache.R | 2 - R/create_filter_table.R | 2 - R/extract_data.R | 4 +- R/extract_dsd.R | 6 +-- R/extract_toc.R | 2 - R/filter_raw_data.R | 2 - R/get_compressed_sdmx.R | 2 - R/get_eurostat_bulk.R | 26 +++++++-------- R/get_eurostat_codelist.R | 2 - R/get_eurostat_data.R | 36 ++++++++++++--------- R/get_eurostat_dsd.R | 14 ++++---- R/get_eurostat_raw.R | 48 ++++++++++++++-------------- R/get_eurostat_toc.R | 23 +++++-------- R/load_cfg.R | 6 +-- R/search_eurostat_dsd.R | 2 - R/search_eurostat_toc.R | 5 +- README.md | 2 - inst/tinytest/test_restatapi.R | 53 +++++++++++++++++++------------ man/create_filter_table.Rd | 2 - man/extract_data.Rd | 2 - man/extract_dsd.Rd | 6 +-- man/extract_toc.Rd | 2 - man/filter_raw_data.Rd | 2 - man/get_compressed_sdmx.Rd | 2 - man/get_eurostat_bulk.Rd | 12 +++---- man/get_eurostat_codelist.Rd | 2 - man/get_eurostat_data.Rd | 23 ++++++++----- man/get_eurostat_dsd.Rd | 9 ++--- man/get_eurostat_raw.Rd | 15 +++++--- man/get_eurostat_toc.Rd | 6 +-- man/load_cfg.Rd | 2 - man/search_eurostat_dsd.Rd | 2 - man/search_eurostat_toc.Rd | 5 +- 36 files changed, 248 insertions(+), 195 deletions(-)
Title: HTTP and WebSocket Server Library
Description: Provides low-level socket and protocol support for handling
HTTP and WebSocket requests directly from within R. It is primarily
intended as a building block for other packages, rather than making it
particularly easy to create complete web applications using httpuv
alone. httpuv is built on top of the libuv and http-parser C
libraries, both of which were developed by Joyent, Inc. (See LICENSE
file for libuv and http-parser license information.)
Author: Joe Cheng [aut],
Winston Chang [aut, cre],
Posit, PBC fnd [cph],
Hector Corrada Bravo [ctb],
Jeroen Ooms [ctb],
Andrzej Krzemienski [cph] ,
libuv project contributors [cph] ,
Joyent, Inc. and other Node contributors [cph] ,
Niels Provos [cph] ,
Inter [...truncated...]
Maintainer: Winston Chang <winston@posit.co>
Diff between httpuv versions 1.6.14 dated 2024-01-26 and 1.6.15 dated 2024-03-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/staticServer.R | 7 ++++++- tests/testthat/test-staticServer.R | 10 ++-------- 5 files changed, 21 insertions(+), 16 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects and adjusted predictions from statistical
models and returns the result as tidy data frames. These data frames are
ready to use with the 'ggplot2'-package. Effects and predictions can be
calculated for many different models. Interaction terms, splines and
polynomial terms are also supported. The main functions are ggpredict(),
ggemmeans() and ggeffect(). There is a generic plot()-method to plot the
results using 'ggplot2'.
Author: Daniel Luedecke [aut, cre] ,
Frederik Aust [ctb] ,
Sam Crawley [ctb] ,
Mattan S. Ben-Shachar [ctb] ,
Sean C. Anderson [ctb]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between ggeffects versions 1.5.0 dated 2024-02-24 and 1.5.1 dated 2024-03-26
DESCRIPTION | 8 LICENSE | 4 MD5 | 101 +++++------ NAMESPACE | 3 NEWS.md | 14 + R/ggeffect.R | 4 R/ggpredict.R | 21 -- R/johnson_neyman.R | 97 ++++++---- R/johnson_neyman_numcat.R |only R/moderator_pattern.R | 2 R/plot.R | 8 R/predict_response.R | 120 ++++++------- R/print.R | 32 ++- R/test_predictions.R | 92 +++++++--- R/utils_get_data_grid.R | 6 R/vcov.R | 2 README.md | 144 +++++++++++----- build/vignette.rds |binary inst/doc/content.html | 4 man/figures/unnamed-chunk-4-1.png |binary man/figures/unnamed-chunk-5-1.png |binary man/figures/unnamed-chunk-6-1.png |binary man/figures/unnamed-chunk-7-1.png |binary man/figures/unnamed-chunk-8-1.png |only man/ggpredict.Rd | 23 +- man/install_latest.Rd | 80 ++++---- man/johnson_neyman.Rd | 5 man/predict_response.Rd | 118 ++++++------- man/print.Rd | 11 - man/test_predictions.Rd | 34 +++ man/values_at.Rd | 2 man/vcov.Rd | 2 tests/testthat/_snaps/avg_predictions.md | 128 +++++++------- tests/testthat/_snaps/glmmTMB.md | 76 ++++---- tests/testthat/_snaps/list_terms.md | 170 +++++++++---------- tests/testthat/_snaps/print_md.md |only tests/testthat/_snaps/print_test_predictions.md | 25 -- tests/testthat/test-betareg.R | 2 tests/testthat/test-condition.R | 3 tests/testthat/test-glmrob_base.R | 1 tests/testthat/test-johnson_neyman_numcat.R |only tests/testthat/test-lmer.R | 5 tests/testthat/test-negbin.R | 2 tests/testthat/test-nlme.R | 2 tests/testthat/test-orm.R | 1 tests/testthat/test-poly-zeroinf.R | 1 tests/testthat/test-print.R | 1 tests/testthat/test-print_md.R |only tests/testthat/test-print_test_predictions-ordinal.R | 8 tests/testthat/test-print_test_predictions.R | 20 ++ tests/testthat/test-sdmTMB.R | 1 tests/testthat/test-tobit.R | 2 tests/testthat/test-zeroinfl.R | 2 tests/testthat/test-zi_prob.R | 1 54 files changed, 781 insertions(+), 607 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-17 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-13 0.3.1
2022-02-21 0.2.1
2020-12-06 0.2.0
2018-09-19 0.1.3
2018-06-22 0.1.2
2017-09-07 0.1.1
2017-09-01 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-21 1.8
2022-02-16 1.6
2020-12-01 1.5
2020-05-29 1.4.5
2019-01-02 1.4
2017-09-28 1.3
2017-06-13 1.2
2017-03-27 1.1
2017-02-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-16 0.1.3
2023-10-11 0.1.2
Title: Input/Output 'SomaScan' Data
Description: Load and export 'SomaScan' data via the
'SomaLogic Operating Co., Inc.' structured text file
called an ADAT ('*.adat'). For file format see
<https://github.com/SomaLogic/SomaLogic-Data/blob/master/README.md>.
The package also exports auxiliary functions for
manipulating, wrangling, and extracting relevant
information from an ADAT object once in memory.
Author: Stu Field [aut, cre] ,
SomaLogic Operating Co., Inc. [cph, fnd]
Maintainer: Stu Field <stu.g.field@gmail.com>
Diff between SomaDataIO versions 6.0.0 dated 2023-03-15 and 6.1.0 dated 2024-03-26
SomaDataIO-6.0.0/SomaDataIO/man/figures/README-ggplot-boxes-1.png |only SomaDataIO-6.0.0/SomaDataIO/man/figures/README-linreg-plot-1.png |only SomaDataIO-6.0.0/SomaDataIO/tests/testthat/test-s3-transform.R |only SomaDataIO-6.1.0/SomaDataIO/DESCRIPTION | 15 SomaDataIO-6.1.0/SomaDataIO/LICENSE | 2 SomaDataIO-6.1.0/SomaDataIO/MD5 | 162 + SomaDataIO-6.1.0/SomaDataIO/NAMESPACE | 19 SomaDataIO-6.1.0/SomaDataIO/NEWS.md | 174 ++ SomaDataIO-6.1.0/SomaDataIO/R/adat-helpers.R |only SomaDataIO-6.1.0/SomaDataIO/R/addAttributes.R |only SomaDataIO-6.1.0/SomaDataIO/R/addClass.R |only SomaDataIO-6.1.0/SomaDataIO/R/cleanNames.R |only SomaDataIO-6.1.0/SomaDataIO/R/convertColMeta.R |only SomaDataIO-6.1.0/SomaDataIO/R/diffAdats.R | 2 SomaDataIO-6.1.0/SomaDataIO/R/dplyr-verbs.R | 79 SomaDataIO-6.1.0/SomaDataIO/R/genRowNames.R |only SomaDataIO-6.1.0/SomaDataIO/R/getAnalyteInfo.R | 24 SomaDataIO-6.1.0/SomaDataIO/R/getSomaScanLiftCCC.R |only SomaDataIO-6.1.0/SomaDataIO/R/getTargetNames.R | 5 SomaDataIO-6.1.0/SomaDataIO/R/is-intact-attr.R | 23 SomaDataIO-6.1.0/SomaDataIO/R/lift-adat.R | 261 +-- SomaDataIO-6.1.0/SomaDataIO/R/loadAdatsAsList.R | 44 SomaDataIO-6.1.0/SomaDataIO/R/merge-clin.R |only SomaDataIO-6.1.0/SomaDataIO/R/params.R |only SomaDataIO-6.1.0/SomaDataIO/R/parseCheck.R |only SomaDataIO-6.1.0/SomaDataIO/R/parseHeader.R | 2 SomaDataIO-6.1.0/SomaDataIO/R/read-adat.R | 17 SomaDataIO-6.1.0/SomaDataIO/R/read-annotations.R | 85 - SomaDataIO-6.1.0/SomaDataIO/R/rownames.R | 33 SomaDataIO-6.1.0/SomaDataIO/R/s3-print-soma-adat.R | 33 SomaDataIO-6.1.0/SomaDataIO/R/s3-soma-adat.R | 42 SomaDataIO-6.1.0/SomaDataIO/R/s3-transform.R | 4 SomaDataIO-6.1.0/SomaDataIO/R/scaleAnalytes.R |only SomaDataIO-6.1.0/SomaDataIO/R/syncColMeta.R |only SomaDataIO-6.1.0/SomaDataIO/R/sysdata.rda |binary SomaDataIO-6.1.0/SomaDataIO/R/tidyr-verbs.R | 21 SomaDataIO-6.1.0/SomaDataIO/R/utils-lift.R |only SomaDataIO-6.1.0/SomaDataIO/R/utils-release.R |only SomaDataIO-6.1.0/SomaDataIO/R/utils.R | 54 SomaDataIO-6.1.0/SomaDataIO/R/write-adat.R | 26 SomaDataIO-6.1.0/SomaDataIO/R/z-deprecated.R | 62 SomaDataIO-6.1.0/SomaDataIO/R/zzz.R | 14 SomaDataIO-6.1.0/SomaDataIO/README.md | 819 +--------- SomaDataIO-6.1.0/SomaDataIO/build/vignette.rds |binary SomaDataIO-6.1.0/SomaDataIO/inst/WORDLIST | 3 SomaDataIO-6.1.0/SomaDataIO/inst/check-pkg-versions.R | 25 SomaDataIO-6.1.0/SomaDataIO/inst/cli/merge/merge_clin.R | 39 SomaDataIO-6.1.0/SomaDataIO/inst/doc/SomaDataIO.R | 2 SomaDataIO-6.1.0/SomaDataIO/inst/doc/SomaDataIO.Rmd | 52 SomaDataIO-6.1.0/SomaDataIO/inst/doc/SomaDataIO.html | 304 +++ SomaDataIO-6.1.0/SomaDataIO/man/SomaDataIO-deprecated.Rd | 40 SomaDataIO-6.1.0/SomaDataIO/man/SomaDataIO-package.Rd | 2 SomaDataIO-6.1.0/SomaDataIO/man/adat-helpers.Rd |only SomaDataIO-6.1.0/SomaDataIO/man/addAttributes.Rd |only SomaDataIO-6.1.0/SomaDataIO/man/addClass.Rd |only SomaDataIO-6.1.0/SomaDataIO/man/cleanNames.Rd |only SomaDataIO-6.1.0/SomaDataIO/man/figures/lifecycle-deprecated.svg |only SomaDataIO-6.1.0/SomaDataIO/man/figures/lifecycle-soft-deprecated.svg |only SomaDataIO-6.1.0/SomaDataIO/man/figures/lifecycle-stable.svg |only SomaDataIO-6.1.0/SomaDataIO/man/figures/lifecycle-superseded.svg |only SomaDataIO-6.1.0/SomaDataIO/man/figures/logo.png |binary SomaDataIO-6.1.0/SomaDataIO/man/getAnalyteInfo.Rd | 4 SomaDataIO-6.1.0/SomaDataIO/man/getAnalytes.Rd | 4 SomaDataIO-6.1.0/SomaDataIO/man/is_intact_attr.Rd | 19 SomaDataIO-6.1.0/SomaDataIO/man/lift_adat.Rd | 147 + SomaDataIO-6.1.0/SomaDataIO/man/loadAdatsAsList.Rd | 4 SomaDataIO-6.1.0/SomaDataIO/man/merge_clin.Rd |only SomaDataIO-6.1.0/SomaDataIO/man/params.Rd |only SomaDataIO-6.1.0/SomaDataIO/man/pivotExpressionSet.Rd | 10 SomaDataIO-6.1.0/SomaDataIO/man/read_adat.Rd | 17 SomaDataIO-6.1.0/SomaDataIO/man/read_annotations.Rd | 10 SomaDataIO-6.1.0/SomaDataIO/man/soma_adat.Rd | 18 SomaDataIO-6.1.0/SomaDataIO/man/write_adat.Rd | 4 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/_snaps/S3-median.md | 3 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/_snaps/S3-print.md | 143 + SomaDataIO-6.1.0/SomaDataIO/tests/testthat/_snaps/diffAdats.md | 32 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/_snaps/getTargetNames.md |only SomaDataIO-6.1.0/SomaDataIO/tests/testthat/_snaps/groupGenerics.md | 4 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/_snaps/is-intact-attr.md |only SomaDataIO-6.1.0/SomaDataIO/tests/testthat/_snaps/loadAdatsAsList.md | 71 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/_snaps/scaleAnalytes.md |only SomaDataIO-6.1.0/SomaDataIO/tests/testthat/helper.R | 16 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-S3-print.R | 8 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-S3-transform.R |only SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-SeqId.R | 47 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-addAttributes.R |only SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-addClass.R |only SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-dplyr-verbs.R | 51 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-getAdatVersion.R | 39 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-getAnalyteInfo.R |only SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-getSomaScanVersion.R |only SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-getTargetNames.R |only SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-is-intact-attr.R | 40 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-is-seqFormat.R |only SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-lift-adat.R | 101 - SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-merge-clin.R |only SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-read-annotations.R | 15 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-rownames.R | 19 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-scaleAnalytes.R |only SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-tidyr-verbs.R | 6 SomaDataIO-6.1.0/SomaDataIO/tests/testthat/test-with-interactive.R |only SomaDataIO-6.1.0/SomaDataIO/vignettes/SomaDataIO.Rmd | 52 102 files changed, 1816 insertions(+), 1557 deletions(-)