Title: Time to Event Outcome in Experimental Designs of Pre-Clinical
Studies
Description: Conduct simulation-based customized power calculation
for clustered time to event data in a mixed crossed/nested design,
where a number of cell lines and a number of mice within each cell line are considered to achieve a desired statistical power,
motivated by Eckel-Passow and colleagues (2021) <doi:10.1093/neuonc/noab137>.
This package provides two commonly used models for powering a design, linear mixed effects and Cox frailty model. Both models account for
within-subject (cell line) correlation while holding different distributional assumptions about the outcome.
Alternatively, the counterparts of fixed effects model are also available, which produces similar estimates of statistical power.
Author: Shanpeng Li [aut, cre],
Gang Li [ctb]
Maintainer: Shanpeng Li <lishanpeng0913@ucla.edu>
Diff between PDXpower versions 1.0.0 dated 2024-03-11 and 1.0.1 dated 2024-04-01
PDXpower-1.0.0/PDXpower/data/mice1.rda |only PDXpower-1.0.0/PDXpower/data/mice2.rda |only PDXpower-1.0.0/PDXpower/man/mice1.Rd |only PDXpower-1.0.0/PDXpower/man/mice2.Rd |only PDXpower-1.0.1/PDXpower/DESCRIPTION | 8 PDXpower-1.0.1/PDXpower/MD5 | 54 +- PDXpower-1.0.1/PDXpower/NAMESPACE | 2 PDXpower-1.0.1/PDXpower/R/PowANOVA.R | 23 PDXpower-1.0.1/PDXpower/R/PowANOVADat.R | 4 PDXpower-1.0.1/PDXpower/R/PowFrailty.R | 12 PDXpower-1.0.1/PDXpower/R/PowFrailtyDat.R | 4 PDXpower-1.0.1/PDXpower/R/PowerTable.R | 5 PDXpower-1.0.1/PDXpower/R/data.R | 16 PDXpower-1.0.1/PDXpower/R/globals.R | 4 PDXpower-1.0.1/PDXpower/R/plotpower.R | 246 ++++++--- PDXpower-1.0.1/PDXpower/R/print.PowANOVADat.R | 12 PDXpower-1.0.1/PDXpower/R/print.PowFrailtyDat.R | 14 PDXpower-1.0.1/PDXpower/R/print.PowerTable.R | 23 PDXpower-1.0.1/PDXpower/R/simfit.R | 26 - PDXpower-1.0.1/PDXpower/README.md | 259 +++++----- PDXpower-1.0.1/PDXpower/data/animals1.rda |only PDXpower-1.0.1/PDXpower/data/animals2.rda |only PDXpower-1.0.1/PDXpower/inst/WORDLIST | 2 PDXpower-1.0.1/PDXpower/man/PowANOVA.Rd | 8 PDXpower-1.0.1/PDXpower/man/PowANOVADat.Rd | 4 PDXpower-1.0.1/PDXpower/man/PowFrailtyDat.Rd | 4 PDXpower-1.0.1/PDXpower/man/PowerTable.Rd | 2 PDXpower-1.0.1/PDXpower/man/animals1.Rd |only PDXpower-1.0.1/PDXpower/man/animals2.Rd |only PDXpower-1.0.1/PDXpower/man/figures/README-unnamed-chunk-3-1.png |binary PDXpower-1.0.1/PDXpower/man/figures/README-unnamed-chunk-6-1.png |binary PDXpower-1.0.1/PDXpower/man/plotpower.Rd | 17 32 files changed, 457 insertions(+), 292 deletions(-)
Title: Label Data Frames, Variables, and Values
Description: Create and use data frame labels for data frame objects (frame labels), their columns (name labels), and individual values of a column (value labels). Value labels include one-to-one and many-to-one labels for nominal and ordinal variables, as well as numerical range-based value labels for continuous variables. Convert value-labeled variables so each value is replaced by its corresponding value label. Add values-converted-to-labels columns to a value-labeled data frame while preserving parent columns. Filter and subset a value-labeled data frame using labels, while returning results in terms of values. Overlay labels in place of values in common R commands to increase interpretability. Generate tables of value frequencies, with categories expressed as raw values or as labels. Access data frames that show value-to-label mappings for easy reference.
Author: Robert Hartman [aut, cre],
The MITRE Corporation [cph]
Maintainer: Robert Hartman <rohartman@gmail.com>
Diff between labelr versions 0.1.3 dated 2024-02-21 and 0.1.4 dated 2024-04-01
DESCRIPTION | 6 MD5 | 222 ++++++----- NAMESPACE | 12 NEWS.md | 21 + R/add1m1.R | 48 +- R/add_lab_col1.R | 44 -- R/add_lab_cols.R | 20 - R/add_lab_dumm1.R | 17 R/add_m1_lab.R | 34 - R/add_quant1.R | 11 R/add_val1.R | 182 +++++---- R/add_val_labs.R | 109 +++-- R/all_uniquev.R |only R/get_name_labs.R | 2 R/get_val_lab1.R |only R/get_val_labs.R | 22 - R/has_avl_labs.R |only R/has_m1_labs.R |only R/has_quant_labs.R |only R/has_val_labs.R |only R/slab.R | 2 R/use_val_lab1.R | 39 -- R/use_val_labs.R | 40 +- R/val_labs_vec.R | 91 ++-- inst/doc/labelr-introduction.R | 4 inst/doc/labelr-introduction.Rmd | 70 +-- inst/doc/labelr-introduction.html | 82 ++-- inst/doc/labelr-special-topics.R | 17 inst/doc/labelr-special-topics.Rmd | 90 +++- inst/doc/labelr-special-topics.html | 111 +++-- man/add1m1.Rd | 167 ++++---- man/add_factor_info.Rd | 58 +-- man/add_frame_lab.Rd | 92 ++-- man/add_lab_atts.Rd | 146 +++---- man/add_lab_col1.Rd | 140 +++---- man/add_lab_cols.Rd | 220 +++++------ man/add_lab_dumm1.Rd | 321 ++++++++-------- man/add_lab_dummies.Rd | 300 +++++++-------- man/add_m1_lab.Rd | 250 ++++++------ man/add_name_labs.Rd | 350 +++++++++--------- man/add_quant1.Rd | 179 ++++----- man/add_quant_labs.Rd | 236 ++++++------ man/add_val1.Rd | 227 ++++++----- man/add_val_labs.Rd | 432 +++++++++++----------- man/all_quant_labs.Rd | 98 ++--- man/all_uniquev.Rd |only man/as_base_data_frame.Rd | 98 ++--- man/as_num.Rd | 96 ++-- man/as_numv.Rd | 82 ++-- man/axis_lab.Rd | 118 +++--- man/check_any_lab_atts.Rd | 106 ++--- man/check_class.Rd | 78 ++-- man/check_irregular.Rd | 172 ++++---- man/check_labs_att.Rd | 78 ++-- man/clean_data_atts.Rd | 136 +++---- man/convert_labs.Rd | 112 ++--- man/copy_var.Rd | 106 ++--- man/drop_frame_lab.Rd | 84 ++-- man/drop_name_labs.Rd | 170 ++++---- man/drop_val1.Rd | 136 +++---- man/drop_val_labs.Rd | 198 +++++----- man/factor_to_lab_int.Rd | 178 ++++----- man/flab.Rd | 184 ++++----- man/get_all_factors.Rd | 60 +-- man/get_all_lab_atts.Rd | 78 ++-- man/get_factor_atts.Rd | 88 ++-- man/get_factor_info.Rd | 94 ++-- man/get_frame_lab.Rd | 90 ++-- man/get_labs_att.Rd | 70 +-- man/get_name_labs.Rd | 114 ++--- man/get_val_lab1.Rd |only man/get_val_labs.Rd | 150 +++---- man/greml.Rd | 162 ++++---- man/gremlr.Rd | 156 ++++---- man/has_avl_labs.Rd |only man/has_decv.Rd | 92 ++-- man/has_m1_labs.Rd |only man/has_quant_labs.Rd |only man/has_val_labs.Rd |only man/headl.Rd | 96 ++-- man/init_labs.Rd | 78 ++-- man/irregular2v.Rd | 134 +++--- man/is_numable.Rd | 74 +-- man/lab_int_to_factor.Rd | 170 ++++---- man/make_demo_data.Rd | 116 +++--- man/make_likert_data.Rd | 112 ++--- man/recode_vals.Rd | 136 +++---- man/restore_factor_info.Rd | 64 +-- man/sbrac.Rd | 170 ++++---- man/scbind.Rd | 96 ++-- man/schange.Rd | 134 +++--- man/sdrop.Rd | 108 ++--- man/sfilter.Rd | 110 ++--- man/sgen.Rd | 146 +++---- man/slab.Rd | 222 +++++------ man/smerge.Rd | 118 +++--- man/somel.Rd | 92 ++-- man/sort_val_labs.Rd | 90 ++-- man/srbind.Rd | 122 +++--- man/srename.Rd | 110 ++--- man/sreplace.Rd | 158 ++++---- man/sselect.Rd | 106 ++--- man/ssort.Rd | 152 +++---- man/ssubset.Rd | 140 +++---- man/strip_labs.Rd | 84 ++-- man/tabl.Rd | 696 ++++++++++++++++++------------------ man/taill.Rd | 98 ++--- man/transfer_labs.Rd | 164 ++++---- man/use_name_labs.Rd | 218 +++++------ man/use_val_lab1.Rd | 123 +++--- man/use_val_labs.Rd | 266 ++++++------- man/use_var_names.Rd | 210 +++++----- man/val_labs_vec.Rd | 129 +++--- man/with_both_labs.Rd | 200 +++++----- man/with_name_labs.Rd | 176 ++++----- man/with_val_labs.Rd | 150 +++---- vignettes/labelr-introduction.Rmd | 70 +-- vignettes/labelr-special-topics.Rmd | 90 +++- 118 files changed, 6893 insertions(+), 6633 deletions(-)
Title: Matching and Weighting Multiply Imputed Datasets
Description: Provides essential tools for the pre-processing techniques of matching and weighting multiply imputed datasets. The package includes functions for matching within and across multiply imputed datasets using various methods, estimating weights for units in the imputed datasets using multiple weighting methods, calculating causal effect estimates in each matched or weighted dataset using parametric or non-parametric statistical models, and pooling the resulting estimates according to Rubin's rules (please see <https://journal.r-project.org/archive/2021/RJ-2021-073/> for more details).
Author: Farhad Pishgar [aut, cre],
Noah Greifer [aut],
Clemence Leyrat [ctb],
Elizabeth Stuart [ctb]
Maintainer: Farhad Pishgar <Farhad.Pishgar@Gmail.com>
Diff between MatchThem versions 1.1.0 dated 2023-06-14 and 1.2.1 dated 2024-04-01
DESCRIPTION | 12 ++--- MD5 | 78 +++++++++++++++++++----------------- NAMESPACE | 4 + NEWS.md | 12 ++++- R/as.mimids.R |only R/as.wimids.R |only R/cbind.R | 11 ++--- R/class.functions.R | 16 +++---- R/complete.R | 28 ++++++------- R/internal.functions.R | 3 - R/is.R | 105 +++++++++++++++++++++---------------------------- R/matchthem.R | 50 ++++++++++------------- R/mimids.R | 8 +-- R/mimipo.R | 8 +-- R/mimira.R | 8 +-- R/osteoarthritis.R | 14 +++--- R/pool.R | 32 +++++++------- R/trim.R | 28 +++++-------- R/weightthem.R | 87 +++++++++++++++++++--------------------- R/wimids.R | 8 +-- R/with.R | 70 ++++++++++++++++++++++---------- README.md | 4 - build/partial.rdb |binary build/vignette.rds |binary man/as.mimids.Rd |only man/as.wimids.Rd |only man/cbind.Rd | 5 -- man/complete.Rd | 16 +++---- man/is.mimids.Rd | 14 ++---- man/is.mimipo.Rd | 10 +--- man/is.mimira.Rd | 14 ++---- man/is.wimids.Rd | 14 ++---- man/matchthem.Rd | 30 +++++--------- man/mimids.Rd | 2 man/mimipo.Rd | 2 man/mimira.Rd | 2 man/osteoarthritis.Rd | 14 +++--- man/pool.Rd | 20 ++++----- man/trim.Rd | 22 +++++----- man/weightthem.Rd | 36 +++++++--------- man/wimids.Rd | 2 man/with.Rd | 31 +++++++++----- 42 files changed, 408 insertions(+), 412 deletions(-)
Title: Tools for Reshaping Text
Description: Tools that can be used to reshape and restructure text data.
Author: Tyler Rinker [aut, cre],
Joran Elias [ctb],
Matthew Flickinger [ctb],
Paul Foster [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between textshape versions 1.7.3 dated 2021-05-28 and 1.7.5 dated 2024-04-01
textshape-1.7.3/textshape/NEWS |only textshape-1.7.3/textshape/inst/CITATION |only textshape-1.7.3/textshape/man/split_match_regex_to_transcript.Rd |only textshape-1.7.5/textshape/DESCRIPTION | 9 textshape-1.7.5/textshape/MD5 | 155 textshape-1.7.5/textshape/NAMESPACE | 159 textshape-1.7.5/textshape/R/bind_list.R | 190 textshape-1.7.5/textshape/R/bind_table.R | 72 textshape-1.7.5/textshape/R/bind_vector.R | 82 textshape-1.7.5/textshape/R/change_index.R | 50 textshape-1.7.5/textshape/R/cluster_matrix.R | 194 textshape-1.7.5/textshape/R/column_to_rownames.R | 54 textshape-1.7.5/textshape/R/combine.R | 146 textshape-1.7.5/textshape/R/duration.R | 290 textshape-1.7.5/textshape/R/flatten.R | 203 textshape-1.7.5/textshape/R/from_to.R | 257 textshape-1.7.5/textshape/R/grab_index.R | 157 textshape-1.7.5/textshape/R/grab_match.R | 256 textshape-1.7.5/textshape/R/mtabulate.R | 136 textshape-1.7.5/textshape/R/split_index.R | 356 - textshape-1.7.5/textshape/R/split_match.R | 178 textshape-1.7.5/textshape/R/split_match_regex_to_transcript.R | 374 - textshape-1.7.5/textshape/R/split_portion.R | 348 - textshape-1.7.5/textshape/R/split_run.R | 126 textshape-1.7.5/textshape/R/split_sentence.R | 446 - textshape-1.7.5/textshape/R/split_sentence_token.R | 178 textshape-1.7.5/textshape/R/split_speaker.R | 158 textshape-1.7.5/textshape/R/split_token.R | 154 textshape-1.7.5/textshape/R/split_transcript.R | 132 textshape-1.7.5/textshape/R/split_word.R | 146 textshape-1.7.5/textshape/R/textshape-package.R | 200 textshape-1.7.5/textshape/R/tidy_colo_dtm.R | 162 textshape-1.7.5/textshape/R/tidy_dtm.R | 192 textshape-1.7.5/textshape/R/tidy_list.R | 256 textshape-1.7.5/textshape/R/tidy_matrix.R | 118 textshape-1.7.5/textshape/R/tidy_table.R | 54 textshape-1.7.5/textshape/R/tidy_vector.R | 64 textshape-1.7.5/textshape/R/unique_pairs.R | 114 textshape-1.7.5/textshape/R/unnest_text.R | 216 textshape-1.7.5/textshape/R/utils.R | 400 - textshape-1.7.5/textshape/README.md | 3474 ++++------ textshape-1.7.5/textshape/man/DATA.Rd | 50 textshape-1.7.5/textshape/man/bind_list.Rd | 108 textshape-1.7.5/textshape/man/bind_table.Rd | 64 textshape-1.7.5/textshape/man/bind_vector.Rd | 64 textshape-1.7.5/textshape/man/change_index.Rd | 70 textshape-1.7.5/textshape/man/cluster_matrix.Rd | 176 textshape-1.7.5/textshape/man/column_to_rownames.Rd | 60 textshape-1.7.5/textshape/man/combine.Rd | 98 textshape-1.7.5/textshape/man/duration.Rd | 144 textshape-1.7.5/textshape/man/flatten.Rd | 153 textshape-1.7.5/textshape/man/from_to.Rd | 167 textshape-1.7.5/textshape/man/golden_rules.Rd | 60 textshape-1.7.5/textshape/man/grab_index.Rd | 91 textshape-1.7.5/textshape/man/grab_match.Rd | 134 textshape-1.7.5/textshape/man/hamlet.Rd | 64 textshape-1.7.5/textshape/man/mtabulate.Rd | 122 textshape-1.7.5/textshape/man/simple_dtm.Rd | 52 textshape-1.7.5/textshape/man/split_index.Rd | 174 textshape-1.7.5/textshape/man/split_match.Rd | 118 textshape-1.7.5/textshape/man/split_portion.Rd | 136 textshape-1.7.5/textshape/man/split_run.Rd | 92 textshape-1.7.5/textshape/man/split_sentence.Rd | 106 textshape-1.7.5/textshape/man/split_sentence_token.Rd | 110 textshape-1.7.5/textshape/man/split_speaker.Rd | 82 textshape-1.7.5/textshape/man/split_token.Rd | 94 textshape-1.7.5/textshape/man/split_transcript.Rd | 124 textshape-1.7.5/textshape/man/split_word.Rd | 94 textshape-1.7.5/textshape/man/textshape.Rd | 20 textshape-1.7.5/textshape/man/tidy_colo_dtm.Rd | 124 textshape-1.7.5/textshape/man/tidy_dtm.Rd | 142 textshape-1.7.5/textshape/man/tidy_list.Rd | 166 textshape-1.7.5/textshape/man/tidy_matrix.Rd | 100 textshape-1.7.5/textshape/man/tidy_table.Rd | 64 textshape-1.7.5/textshape/man/tidy_vector.Rd | 64 textshape-1.7.5/textshape/man/unique_pairs.Rd | 92 textshape-1.7.5/textshape/man/unnest_text.Rd | 118 textshape-1.7.5/textshape/tests/testthat.R | 6 textshape-1.7.5/textshape/tests/testthat/test-change_index.R | 14 textshape-1.7.5/textshape/tests/testthat/test-mtabulate.R | 14 80 files changed, 6873 insertions(+), 7114 deletions(-)
Title: Spatial Machine Learning
Description: Implements a spatial extension of the random forest algorithm
(Georganos et al. (2019) <doi:10.1080/10106049.2019.1595177>).
Allows for a geographically weighted random forest regression
including a function to find the optical bandwidth. (Georganos
and Kalogirou (2022) <https://www.mdpi.com/2220-9964/11/9/471>).
Author: Stamatis Kalogirou [aut, cre],
Stefanos Georganos [aut, ctb]
Maintainer: Stamatis Kalogirou <stamatis.science@gmail.com>
Diff between SpatialML versions 0.1.6 dated 2023-11-07 and 0.1.7 dated 2024-04-01
DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ man/grf.Rd | 2 +- man/grf.bw.Rd | 2 +- man/predict.grf.Rd | 2 +- man/random.test.data.Rd | 2 +- man/rf.mtry.optim.Rd | 2 +- 7 files changed, 18 insertions(+), 18 deletions(-)
Title: Spatial Accessibility Measures
Description: Provides a set of spatial accessibility measures from a set of locations
(demand) to another set of locations (supply). It aims, among others,
to support research on spatial accessibility to health care facilities.
Includes the locations and some characteristics of major public hospitals in Greece.
Author: Stamatis Kalogirou [aut, cre]
Maintainer: Stamatis Kalogirou <stamatis.science@gmail.com>
Diff between SpatialAcc versions 0.1-4 dated 2020-04-06 and 0.1-5 dated 2024-04-01
DESCRIPTION | 16 ++++++++-------- MD5 | 12 ++++++------ data/GR.Hospitals.RData |binary data/PWC.Municipalities.RData |binary man/SpatialAcc-package.Rd | 6 +++--- man/ac.Rd | 2 +- man/distance.Rd | 2 +- 7 files changed, 19 insertions(+), 19 deletions(-)
Title: Linear Models for Panel Data
Description: A set of estimators for models and (robust) covariance matrices, and tests for panel data
econometrics, including within/fixed effects, random effects, between, first-difference,
nested random effects as well as instrumental-variable (IV) and Hausman-Taylor-style models,
panel generalized method of moments (GMM) and general FGLS models,
mean groups (MG), demeaned MG, and common correlated effects (CCEMG) and pooled (CCEP) estimators
with common factors, variable coefficients and limited dependent variables models.
Test functions include model specification, serial correlation, cross-sectional dependence,
panel unit root and panel Granger (non-)causality. Typical references are general econometrics
text books such as Baltagi (2021), Econometric Analysis of Panel Data (<doi:10.1007/978-3-030-53953-5>),
Hsiao (2014), Analysis of Panel Data (<doi:10.1017/CBO9781139839327>), and Croissant and Millo (2018),
Panel Data Econometrics with R (<doi:10.1002/9781119504641>).
Author: Yves Croissant [aut],
Giovanni Millo [aut],
Kevin Tappe [aut, cre],
Ott Toomet [ctb],
Christian Kleiber [ctb],
Achim Zeileis [ctb],
Arne Henningsen [ctb],
Liviu Andronic [ctb],
Nina Schoenfelder [ctb]
Maintainer: Kevin Tappe <kevin.tappe@bwi.uni-stuttgart.de>
Diff between plm versions 2.6-3 dated 2023-04-09 and 2.6-4 dated 2024-04-01
DESCRIPTION | 14 MD5 | 106 +-- NAMESPACE | 7 NEWS.md | 66 ++ R/est_ggls.R | 1 R/est_gmm.R | 2 R/est_mg.R | 9 R/est_plm.R | 71 +- R/est_vcm.R | 531 +++++++++++------- R/make.pconsecutive_pbalanced.R | 12 R/plm-package.R | 3 R/test_general.R | 48 - R/test_granger.R | 2 R/test_serial.R | 2 R/test_uroot.R | 24 R/tool_ercomp.R | 27 R/tool_methods.R | 2 R/tool_misc.R | 34 - R/tool_pdata.frame.R | 117 +++ R/tool_ranfixef.R | 14 R/tool_transformations.R | 6 R/tool_transformations_collapse.R | 165 ++--- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 33 - inst/doc/A_plmPackage.Rmd | 19 inst/doc/A_plmPackage.html | 349 ++++++----- inst/doc/B_plmFunction.html | 146 ++-- inst/doc/C_plmModelComponents.html | 60 +- inst/tests/test_Estimators.R | 82 +- inst/tests/test_Estimators.Rout.save | 92 +-- inst/tests/test_make.pconsecutive_pbalanced.R | 16 inst/tests/test_make.pconsecutive_pbalanced.Rout.save | 16 inst/tests/test_model.frame.R | 2 inst/tests/test_model.frame.Rout.save | 2 inst/tests/test_pcce_pmg.Rout.save | 24 inst/tests/test_pdata.frame_compliant.R |only inst/tests/test_pdata.frame_compliant.Rout.save |only inst/tests/test_pdata.frame_id_index_more.R | 17 inst/tests/test_pdata.frame_id_index_more.Rout.save | 32 - inst/tests/test_pgmm.Rout.save | 10 inst/tests/test_phtest_Hausman_regression.R | 17 inst/tests/test_phtest_Hausman_regression.Rout.save | 23 inst/tests/test_pvar.Rout.save | 8 inst/tests/test_pvcm.R | 69 ++ inst/tests/test_pvcm.Rout.save | 392 +++++++++++++ man/pcdtest.Rd | 344 +++++------ man/pdata.frame.Rd | 11 man/phansitest.Rd | 20 man/plm-package.Rd | 165 +++-- man/plm.Rd | 6 man/pseries.Rd | 2 man/pvcm.Rd | 73 +- man/within_intercept.Rd | 6 vignettes/A_plmPackage.Rmd | 19 55 files changed, 2130 insertions(+), 1188 deletions(-)
Title: Utilities for Using Munsell Colours
Description: Provides easy access to, and manipulation of, the Munsell
colours. Provides a mapping between Munsell's
original notation (e.g. "5R 5/10") and hexadecimal strings suitable
for use directly in R graphics. Also provides utilities
to explore slices through the Munsell colour tree, to transform
Munsell colours and display colour palettes.
Author: Charlotte Wickham <cwickham@gmail.com>
Maintainer: Charlotte Wickham <cwickham@gmail.com>
Diff between munsell versions 0.5.0 dated 2018-06-12 and 0.5.1 dated 2024-04-01
DESCRIPTION | 10 ++++-- MD5 | 25 ++++++++--------- NEWS.md | 5 +++ R/check.r | 2 - R/munsell-package.R |only R/munsell.r | 14 --------- R/plot.r | 2 - README.md | 44 +++++++++++++++++++++++++++--- man/check_mnsl.Rd | 3 -- man/figures/README-complement-slice-1.png |binary man/figures/README-manipulate-blue-1.png |binary man/figures/README-palette-1.png |binary man/munsell.Rd | 14 ++++++++- man/text_colour.Rd | 2 - 14 files changed, 78 insertions(+), 43 deletions(-)
Title: Local Correlation, Spatial Inequalities, Geographically Weighted
Regression and Other Tools
Description: Provides researchers and educators with easy-to-learn user friendly tools for calculating
key spatial statistics and to apply simple as well as advanced methods of spatial analysis in real data.
These include: Local Pearson and Geographically Weighted Pearson Correlation Coefficients,
Spatial Inequality Measures (Gini, Spatial Gini, LQ, Focal LQ), Spatial Autocorrelation
(Global and Local Moran's I), several Geographically Weighted Regression techniques and other
Spatial Analysis tools (other geographically weighted statistics). This package also contains functions for
measuring the significance of each statistic calculated, mainly based on Monte Carlo simulations.
Author: Stamatis Kalogirou [aut, cre]
Maintainer: Stamatis Kalogirou <stamatis.science@gmail.com>
Diff between lctools versions 0.2-8 dated 2020-04-06 and 0.2-10 dated 2024-04-01
lctools-0.2-10/lctools/DESCRIPTION | 16 +- lctools-0.2-10/lctools/MD5 | 80 ++++++------- lctools-0.2-10/lctools/R/gw.zi.R | 6 lctools-0.2-10/lctools/R/gw.zi.bw.R | 6 lctools-0.2-10/lctools/build/vignette.rds |binary lctools-0.2-10/lctools/data/GR.Municipalities.RData |binary lctools-0.2-10/lctools/data/VotesGR.RData |binary lctools-0.2-10/lctools/inst/doc/SpatialAutocorrelation.R | 8 - lctools-0.2-10/lctools/inst/doc/SpatialAutocorrelation.pdf |only lctools-0.2-10/lctools/inst/doc/SpatialInequalities.pdf |only lctools-0.2-10/lctools/man/FLQ.Rd | 2 lctools-0.2-10/lctools/man/GR.Municipalities.Rd | 9 - lctools-0.2-10/lctools/man/VotesGR.Rd | 25 ++-- lctools-0.2-10/lctools/man/acc.Rd | 4 lctools-0.2-10/lctools/man/gw-variable.Rd | 4 lctools-0.2-10/lctools/man/gw.glm.Rd | 6 lctools-0.2-10/lctools/man/gw.glm.bw.Rd | 4 lctools-0.2-10/lctools/man/gw.glm.cv.Rd | 6 lctools-0.2-10/lctools/man/gw.glm.light.Rd | 4 lctools-0.2-10/lctools/man/gw.glm.mc.test.Rd | 4 lctools-0.2-10/lctools/man/gw.zi.Rd | 7 - lctools-0.2-10/lctools/man/gw.zi.bw.Rd | 4 lctools-0.2-10/lctools/man/gw.zi.cv.Rd | 7 - lctools-0.2-10/lctools/man/gw.zi.light.Rd | 4 lctools-0.2-10/lctools/man/gw.zi.mc.test.Rd | 4 lctools-0.2-10/lctools/man/gwr.Rd | 4 lctools-0.2-10/lctools/man/gwr.bw.Rd | 2 lctools-0.2-10/lctools/man/gwr.cv.Rd | 4 lctools-0.2-10/lctools/man/l.moransI.Rd | 2 lctools-0.2-10/lctools/man/lat2w.Rd | 4 lctools-0.2-10/lctools/man/lcorrel.Rd | 8 - lctools-0.2-10/lctools/man/lctools-package.Rd | 14 +- lctools-0.2-10/lctools/man/mc_correl.Rd | 2 lctools-0.2-10/lctools/man/mc_spGini.Rd | 2 lctools-0.2-10/lctools/man/moransI.Rd | 6 lctools-0.2-10/lctools/man/moransI.v.Rd | 4 lctools-0.2-10/lctools/man/moransI.w.Rd | 6 lctools-0.2-10/lctools/man/random.test.data.Rd | 2 lctools-0.2-10/lctools/man/spGini.Rd | 2 lctools-0.2-10/lctools/man/spGini.w.Rd | 2 lctools-0.2-10/lctools/man/w.matrix.Rd | 4 lctools-0.2-8/lctools/inst/doc/SpatialAutocorrelation.html |only lctools-0.2-8/lctools/inst/doc/SpatialInequalities.html |only 43 files changed, 143 insertions(+), 135 deletions(-)
Title: Regression Modelling using I-Priors
Description: Provides methods to perform and analyse I-prior regression models.
Estimation is done either via direct optimisation of the log-likelihood or
an EM algorithm.
Author: Haziq Jamil [aut, cre]
Maintainer: Haziq Jamil <haziq.jamil@gmail.com>
Diff between iprior versions 0.7.3 dated 2019-03-20 and 0.7.4 dated 2024-04-01
iprior-0.7.3/iprior/man/iprior_package.Rd |only iprior-0.7.4/iprior/DESCRIPTION | 9 iprior-0.7.4/iprior/MD5 | 80 iprior-0.7.4/iprior/NAMESPACE | 39 iprior-0.7.4/iprior/NEWS.md | 5 iprior-0.7.4/iprior/R/Kernel_functions.R | 4 iprior-0.7.4/iprior/R/Kernel_loader.R | 68 iprior-0.7.4/iprior/R/Kernel_loader_helper.R | 54 iprior-0.7.4/iprior/R/Plots.R | 8 iprior-0.7.4/iprior/R/Utilities.R | 27 iprior-0.7.4/iprior/R/fitted_and_predict.R | 3 iprior-0.7.4/iprior/R/iprior-package.R | 11 iprior-0.7.4/iprior/R/iprior.R | 20 iprior-0.7.4/iprior/R/ipriorMod_methods.R | 7 iprior-0.7.4/iprior/R/iprior_helper.R | 30 iprior-0.7.4/iprior/README.md | 19 iprior-0.7.4/iprior/build/vignette.rds |binary iprior-0.7.4/iprior/inst/doc/iprior_paper.pdf |binary iprior-0.7.4/iprior/inst/doc/kernel_matrix.R | 48 iprior-0.7.4/iprior/inst/doc/kernel_matrix.html | 925 ++++++---- iprior-0.7.4/iprior/inst/doc/tecator.R | 14 iprior-0.7.4/iprior/inst/doc/tecator.Rmd | 4 iprior-0.7.4/iprior/inst/doc/tecator.html | 308 ++- iprior-0.7.4/iprior/man/Accessors.Rd | 42 iprior-0.7.4/iprior/man/gen_multilevel.Rd | 15 iprior-0.7.4/iprior/man/gen_smooth.Rd | 3 iprior-0.7.4/iprior/man/hsb.Rd | 6 iprior-0.7.4/iprior/man/hsbsmall.Rd | 6 iprior-0.7.4/iprior/man/iprior-package.Rd |only iprior-0.7.4/iprior/man/iprior.Rd | 73 iprior-0.7.4/iprior/man/iprior_cv.Rd | 53 iprior-0.7.4/iprior/man/kernL.Rd | 55 iprior-0.7.4/iprior/man/kernel.Rd | 4 iprior-0.7.4/iprior/man/plot.ipriorMod.Rd | 19 iprior-0.7.4/iprior/man/pollution.Rd | 6 iprior-0.7.4/iprior/man/predict.Rd | 13 iprior-0.7.4/iprior/man/tecator.cv.Rd | 6 iprior-0.7.4/iprior/man/update.ipriorMod.Rd | 3 iprior-0.7.4/iprior/src/RcppExports.cpp | 5 iprior-0.7.4/iprior/tests/testthat/test-06-fitted_and_predict.R | 12 iprior-0.7.4/iprior/tests/testthat/test-09-iprior_helpers.R | 2 iprior-0.7.4/iprior/vignettes/tecator.Rmd | 4 42 files changed, 1188 insertions(+), 822 deletions(-)
Title: Statistical Methods for Microbiome Compositional Data
Description: A suite of methods for powerful and robust microbiome data analysis addressing zero-inflation, phylogenetic structure and compositional effects (Zhou et al. (2022)<doi:10.1186/s13059-022-02655-5>). The methods can be applied to the analysis of other (high-dimensional) compositional data arising from sequencing experiments.
Author: Xianyang Zhang [aut],
Jun Chen [aut, cre],
Huijuan Zhou [ctb]
Maintainer: Jun Chen <chen.jun2@mayo.edu>
Diff between MicrobiomeStat versions 1.1 dated 2022-01-23 and 1.2 dated 2024-04-01
DESCRIPTION | 14 +-- MD5 | 13 +-- NAMESPACE | 7 + R/linda.R | 203 ++++++++++++++++++++++++++++++++++++++++++++----- data/smokers.rda |binary man/linda.Rd | 52 ++++++++---- man/linda.plot.Rd | 3 man/linda.wald.test.Rd |only 8 files changed, 241 insertions(+), 51 deletions(-)
More information about MicrobiomeStat at CRAN
Permanent link
Title: Nonlinear Time Series Analysis
Description: Functions for nonlinear time series analysis. This package permits
the computation of the most-used nonlinear statistics/algorithms
including generalized correlation dimension, information dimension,
largest Lyapunov exponent, sample entropy and Recurrence
Quantification Analysis (RQA), among others. Basic routines
for surrogate data testing are also included. Part of this work
was based on the book "Nonlinear time series analysis" by
Holger Kantz and Thomas Schreiber (ISBN: 9780521529020).
Author: Constantino A. Garcia [aut, cre],
Gunther Sawitzki [ctb]
Maintainer: Constantino A. Garcia <constantino.garciama@ceu.es>
Diff between nonlinearTseries versions 0.2.12 dated 2022-03-30 and 0.3.0 dated 2024-04-01
DESCRIPTION | 10 MD5 | 30 - NAMESPACE | 11 R/RQA.R | 19 R/RcppExports.R | 4 R/generics.R | 2 R/spectralIndex.R | 8 R/spectral_functions.R | 21 - build/vignette.rds |binary inst/doc/nonlinearTseries_quickstart.html | 621 ++++++++++++++++++++++-------- src/Makevars | 1 src/Makevars.win | 1 src/RcppExports.cpp | 11 src/rqa.cpp | 98 ++-- src/utils.cpp | 10 tests/testthat/test_rqa.R | 28 + 16 files changed, 608 insertions(+), 267 deletions(-)
More information about nonlinearTseries at CRAN
Permanent link
Title: Perform HTTP Requests and Process the Responses
Description: Tools for creating and modifying HTTP requests, then
performing them and processing the results. 'httr2' is a modern
re-imagining of 'httr' that uses a pipe-based interface and solves
more of the problems that API wrapping packages face.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd],
Maximilian Girlich [ctb]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between httr2 versions 1.0.0 dated 2023-11-14 and 1.0.1 dated 2024-04-01
DESCRIPTION | 8 +-- MD5 | 69 ++++++++++++++-------------- NEWS.md | 18 +++++++ R/curl.R | 12 ++-- R/iterate-responses.R | 2 R/iterate.R | 10 ++-- R/jwt.R | 1 R/parse.R | 61 ++++++++++++------------ R/progress-bars.R | 1 R/req-options.R | 16 ++++-- R/req-perform-stream.R | 50 ++++++++++++++++++-- R/req-perform.R | 4 - R/req-retries.R | 16 ++++++ R/req-template.R | 6 +- R/test.R | 2 R/url.R | 11 ++-- README.md | 20 ++++---- build/vignette.rds |binary inst/doc/httr2.html | 40 ++++++++-------- man/curl_translate.Rd | 2 man/jwt_claim.Rd | 1 man/progress_bars.Rd | 1 man/req_perform.Rd | 4 - man/req_perform_iterative.Rd | 10 ++-- man/req_perform_stream.Rd | 15 +++++- man/resps_successes.Rd | 2 tests/testthat/_snaps/req-perform-stream.md | 19 +++++++ tests/testthat/_snaps/req-retries.md |only tests/testthat/test-curl.R | 3 - tests/testthat/test-parse.R | 36 ++++++++++++-- tests/testthat/test-req-cookies.R | 2 tests/testthat/test-req-options.R | 6 ++ tests/testthat/test-req-perform-stream.R | 56 ++++++++++++++++++++++ tests/testthat/test-req-retries.R | 20 ++++++++ tests/testthat/test-req-template.R | 6 ++ tests/testthat/test-url.R | 4 + 36 files changed, 386 insertions(+), 148 deletions(-)
Title: Limited Memory BFGS Minimizer with Bounds on Parameters with
optim() 'C' Interface
Description: Interfacing to Nocedal et al. L-BFGS-B.3.0
(See <http://users.iems.northwestern.edu/~nocedal/lbfgsb.html>)
limited memory BFGS minimizer with bounds on parameters.
This is a fork of 'lbfgsb3'.
This registers a 'R' compatible 'C' interface to L-BFGS-B.3.0 that uses the same
function types and optimization as the optim() function (see writing 'R' extensions
and source for details). This package also adds more stopping criteria as well
as allowing the adjustment of more tolerances.
Author: Matthew L Fidler [aut, cre] ,
John C Nash [aut],
Ciyou Zhu [aut],
Richard Byrd [aut],
Jorge Nocedal [aut],
Jose Luis Morales [aut]
Maintainer: Matthew L Fidler <matthew.fidler@gmail.com>
Diff between lbfgsb3c versions 2020-3.3 dated 2023-11-28 and 2024-3.3 dated 2024-04-01
DESCRIPTION | 20 MD5 | 13 NEWS.md | 10 build/vignette.rds |binary inst/doc/lbfgsb3c.html | 71 -- src/lbfgsb.f | 1517 +++++++++++++++++++++---------------------- src/lbfgsb3x.cpp | 136 ++- tests/testthat/test-240319.R |only 8 files changed, 897 insertions(+), 870 deletions(-)
Title: Fast Change Point Detection via Sequential Gradient Descent
Description: Implements fast change point detection algorithm based on the
paper "Sequential Gradient Descent and Quasi-Newton's Method for
Change-Point Analysis" by Xianyang Zhang, Trisha Dawn
<https://proceedings.mlr.press/v206/zhang23b.html>. The algorithm is
based on dynamic programming with pruning and sequential gradient
descent. It is able to detect change points a magnitude faster than
the vanilla Pruned Exact Linear Time(PELT). The package includes
examples of linear regression, logistic regression, Poisson
regression, penalized linear regression data, and whole lot more
examples with custom cost function in case the user wants to use their
own cost function.
Author: Xingchi Li [aut, cre, cph] ,
Xianyang Zhang [aut, cph]
Maintainer: Xingchi Li <anthony.li@stat.tamu.edu>
Diff between fastcpd versions 0.12.2 dated 2024-03-19 and 0.13.1 dated 2024-04-01
fastcpd-0.12.2/fastcpd/src/fastcpd_class.cc |only fastcpd-0.12.2/fastcpd/src/fastcpd_cost_wrappers.cc |only fastcpd-0.12.2/fastcpd/tests/testthat/examples/fastcpd_4.R |only fastcpd-0.13.1/fastcpd/DESCRIPTION | 16 fastcpd-0.13.1/fastcpd/MD5 | 150 fastcpd-0.13.1/fastcpd/NEWS.md | 17 fastcpd-0.13.1/fastcpd/R/RcppExports.R | 4 fastcpd-0.13.1/fastcpd/R/check.R | 14 fastcpd-0.13.1/fastcpd/R/fastcpd.R | 378 fastcpd-0.13.1/fastcpd/R/fastcpd_class.R | 199 fastcpd-0.13.1/fastcpd/R/fastcpd_data.R | 161 fastcpd-0.13.1/fastcpd/R/fastcpd_wrappers.R | 439 fastcpd-0.13.1/fastcpd/R/variance_estimation.R | 46 fastcpd-0.13.1/fastcpd/README.md | 2 fastcpd-0.13.1/fastcpd/build/vignette.rds |binary fastcpd-0.13.1/fastcpd/inst/CITATION | 3 fastcpd-0.13.1/fastcpd/inst/doc/comparison-packages.R | 104 fastcpd-0.13.1/fastcpd/inst/doc/comparison-packages.Rmd | 52 fastcpd-0.13.1/fastcpd/inst/doc/comparison-packages.html | 5655 ---------- fastcpd-0.13.1/fastcpd/inst/doc/comparison-pelt.html | 4 fastcpd-0.13.1/fastcpd/inst/doc/examples-advanced.html | 322 fastcpd-0.13.1/fastcpd/inst/doc/examples-custom-model.Rmd | 6 fastcpd-0.13.1/fastcpd/inst/doc/examples-custom-model.html | 18 fastcpd-0.13.1/fastcpd/man/bitcoin.Rd | 32 fastcpd-0.13.1/fastcpd/man/fastcpd-class.Rd | 9 fastcpd-0.13.1/fastcpd/man/fastcpd.Rd | 464 fastcpd-0.13.1/fastcpd/man/fastcpd_ar.Rd | 17 fastcpd-0.13.1/fastcpd/man/fastcpd_arima.Rd | 17 fastcpd-0.13.1/fastcpd/man/fastcpd_arma.Rd | 15 fastcpd-0.13.1/fastcpd/man/fastcpd_binomial.Rd | 13 fastcpd-0.13.1/fastcpd/man/fastcpd_family.Rd |only fastcpd-0.13.1/fastcpd/man/fastcpd_garch.Rd | 15 fastcpd-0.13.1/fastcpd/man/fastcpd_lasso.Rd | 13 fastcpd-0.13.1/fastcpd/man/fastcpd_lm.Rd | 13 fastcpd-0.13.1/fastcpd/man/fastcpd_ma.Rd | 15 fastcpd-0.13.1/fastcpd/man/fastcpd_mean.Rd | 13 fastcpd-0.13.1/fastcpd/man/fastcpd_meanvariance.Rd | 17 fastcpd-0.13.1/fastcpd/man/fastcpd_poisson.Rd | 13 fastcpd-0.13.1/fastcpd/man/fastcpd_ts.Rd | 32 fastcpd-0.13.1/fastcpd/man/fastcpd_var.Rd | 17 fastcpd-0.13.1/fastcpd/man/fastcpd_variance.Rd | 13 fastcpd-0.13.1/fastcpd/man/figures/README-ar3-1.png |binary fastcpd-0.13.1/fastcpd/man/occupancy.Rd | 22 fastcpd-0.13.1/fastcpd/man/plot.Rd | 99 fastcpd-0.13.1/fastcpd/man/print.Rd | 10 fastcpd-0.13.1/fastcpd/man/show.Rd | 8 fastcpd-0.13.1/fastcpd/man/summary.Rd | 12 fastcpd-0.13.1/fastcpd/man/transcriptome.Rd | 90 fastcpd-0.13.1/fastcpd/man/uk_seatbelts.Rd | 27 fastcpd-0.13.1/fastcpd/man/variance_mean.Rd | 2 fastcpd-0.13.1/fastcpd/man/well_log.Rd | 29 fastcpd-0.13.1/fastcpd/src/RcppExports.cpp | 9 fastcpd-0.13.1/fastcpd/src/fastcpd_class_cost.cc | 431 fastcpd-0.13.1/fastcpd/src/fastcpd_class_private.cc |only fastcpd-0.13.1/fastcpd/src/fastcpd_class_public.cc |only fastcpd-0.13.1/fastcpd/src/fastcpd_classes.h | 137 fastcpd-0.13.1/fastcpd/src/fastcpd_constants.h | 96 fastcpd-0.13.1/fastcpd/src/fastcpd_functions.cc |only fastcpd-0.13.1/fastcpd/src/fastcpd_functions.h |only fastcpd-0.13.1/fastcpd/src/fastcpd_impl.cc | 3 fastcpd-0.13.1/fastcpd/src/fastcpd_impl.h | 2 fastcpd-0.13.1/fastcpd/src/fastcpd_test_constants.h |only fastcpd-0.13.1/fastcpd/src/fastcpd_types.h | 4 fastcpd-0.13.1/fastcpd/src/test-functions.cc | 18 fastcpd-0.13.1/fastcpd/tests/testthat/examples/data-bitcoin.txt | 28 fastcpd-0.13.1/fastcpd/tests/testthat/examples/data-uk_seatbelts.R | 13 fastcpd-0.13.1/fastcpd/tests/testthat/examples/data-well_log-quantile.txt | 20 fastcpd-0.13.1/fastcpd/tests/testthat/examples/fastcpd_1.R | 31 fastcpd-0.13.1/fastcpd/tests/testthat/examples/fastcpd_2.R | 64 fastcpd-0.13.1/fastcpd/tests/testthat/examples/fastcpd_4.txt |only fastcpd-0.13.1/fastcpd/tests/testthat/examples/fastcpd_var.R | 2 fastcpd-0.13.1/fastcpd/tests/testthat/examples/plot.R |only fastcpd-0.13.1/fastcpd/tests/testthat/test-coverage.R | 39 fastcpd-0.13.1/fastcpd/tests/testthat/test-cpp.R | 1 fastcpd-0.13.1/fastcpd/tests/testthat/test-examples-fastcpd_1.R | 2 fastcpd-0.13.1/fastcpd/tests/testthat/test-examples-fastcpd_2.R | 2 fastcpd-0.13.1/fastcpd/tests/testthat/test-examples-fastcpd_4.R | 11 fastcpd-0.13.1/fastcpd/tests/testthat/test-examples-fastcpd_lasso.R | 2 fastcpd-0.13.1/fastcpd/tests/testthat/test-examples-fastcpd_lm.R | 2 fastcpd-0.13.1/fastcpd/tests/testthat/test-examples-plot.R |only fastcpd-0.13.1/fastcpd/vignettes/comparison-packages.Rmd | 52 fastcpd-0.13.1/fastcpd/vignettes/examples-custom-model.Rmd | 6 82 files changed, 2002 insertions(+), 7590 deletions(-)
Title: Forecasting Using State Space Models
Description: Functions implementing Single Source of Error state space models for purposes of time series analysis and forecasting.
The package includes ADAM (Svetunkov, 2023, <https://openforecast.org/adam/>),
Exponential Smoothing (Hyndman et al., 2008, <doi: 10.1007/978-3-540-71918-2>),
SARIMA (Svetunkov & Boylan, 2019 <doi: 10.1080/00207543.2019.1600764>),
Complex Exponential Smoothing (Svetunkov & Kourentzes, 2018, <doi: 10.13140/RG.2.2.24986.29123>),
Simple Moving Average (Svetunkov & Petropoulos, 2018 <doi: 10.1080/00207543.2017.1380326>)
and several simulation functions. It also allows dealing with intermittent demand based on the
iETS framework (Svetunkov & Boylan, 2019, <doi: 10.13140/RG.2.2.35897.06242>).
Author: Ivan Svetunkov [aut, cre]
Maintainer: Ivan Svetunkov <ivan@svetunkov.com>
Diff between smooth versions 4.0.0 dated 2023-09-17 and 4.0.1 dated 2024-04-01
DESCRIPTION | 15 - MD5 | 80 +++---- NAMESPACE | 1 NEWS | 19 + R/RcppExports.R | 28 +- R/adam-es.R | 82 ++++--- R/adam-sma.R | 52 ++-- R/adam.R | 400 +++++++++++++++++++++---------------- R/adamGeneral.R | 31 +- R/autoadam.R | 5 R/cma.R | 2 R/msdecompose.R | 2 R/smooth-package.R | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/adam.html | 518 ++++++++++++++++++++++++------------------------- inst/doc/ces.html | 8 inst/doc/es.html | 160 +++++++-------- inst/doc/gum.html | 34 +-- inst/doc/oes.html | 122 +++++------ inst/doc/simulate.html | 80 +++---- inst/doc/sma.html | 20 - inst/doc/smooth.Rmd | 2 inst/doc/smooth.html | 14 - inst/doc/ssarima.html | 48 ++-- man/adam.Rd | 12 - man/cma.Rd | 9 man/es.Rd | 2 man/gum.Rd | 7 man/msdecompose.Rd | 8 man/sim.gum.Rd | 7 man/sma.Rd | 7 man/smooth.Rd | 8 src/RcppExports.cpp | 66 +++--- src/adamGeneral.cpp | 178 +++++++++++++--- src/adamGeneral.h | 1 src/adamRefitter.cpp | 36 +-- src/adamSimulator.cpp | 18 - src/ssGeneral.cpp | 17 - src/ssGeneral.h | 18 + vignettes/smooth.Rmd | 2 41 files changed, 1181 insertions(+), 939 deletions(-)
Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included. We further include functions for percentages (or proportions).
The standard textbook for such data is John Aitchison's (1986) "The statistical analysis of compositional data". Relevant papers include:
a) Tsagris M.T., Preston S. and Wood A.T.A. (2011). "A data-based power transformation for compositional data". Fourth International International Workshop on Compositional Data Analysis. <doi:10.48550/arXiv.1106.1451>
b) Tsagris M. (2014). "The k-NN algorithm for compositional data: a revised approach with and without zero values present". Journal of Data Science, 12(3): 519--534. <doi:10.6339/JDS.201407_12(3).0008>.
c) Tsagris M. (2015). "A novel, divergence based, regression for compositional data". Proceedings of the 28th Panhellenic Statistics Conference, 15-18 April 2015, Athens, Greece, 430--444. <doi:10.48550/arXiv.151 [...truncated...]
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Abdulaziz Alenazi [ctb],
Christos Adam [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Compositional versions 6.7 dated 2024-02-29 and 6.8 dated 2024-04-01
Compositional-6.7/Compositional/R/cv.olscompcomp.R |only Compositional-6.7/Compositional/R/ols.compcomp.R |only Compositional-6.7/Compositional/R/ols.compcomp.test.R |only Compositional-6.7/Compositional/man/cv.olscompcomp.Rd |only Compositional-6.7/Compositional/man/ols.compcomp.Rd |only Compositional-6.7/Compositional/man/ols.compcomp.test.Rd |only Compositional-6.8/Compositional/DESCRIPTION | 26 +-- Compositional-6.8/Compositional/MD5 | 92 +++++++---- Compositional-6.8/Compositional/NAMESPACE | 3 Compositional-6.8/Compositional/R/aitknn.tune.R | 2 Compositional-6.8/Compositional/R/alfa.contour.R | 2 Compositional-6.8/Compositional/R/alfa.lasso.R |only Compositional-6.8/Compositional/R/alfalasso.tune.R |only Compositional-6.8/Compositional/R/ascls.R |only Compositional-6.8/Compositional/R/atflr.R |only Compositional-6.8/Compositional/R/bivt.contour.R | 2 Compositional-6.8/Compositional/R/comp.kerncontour.R | 2 Compositional-6.8/Compositional/R/compnorm.contour.R | 2 Compositional-6.8/Compositional/R/cv.ascls.R |only Compositional-6.8/Compositional/R/cv.atflr.R |only Compositional-6.8/Compositional/R/cv.scls.R |only Compositional-6.8/Compositional/R/cv.tflr.R | 10 - Compositional-6.8/Compositional/R/diri.contour.R | 2 Compositional-6.8/Compositional/R/fd.contour.R | 2 Compositional-6.8/Compositional/R/folded.contour.R | 2 Compositional-6.8/Compositional/R/gendiri.contour.R | 2 Compositional-6.8/Compositional/R/kent.contour.R | 2 Compositional-6.8/Compositional/R/lc.glm.R | 4 Compositional-6.8/Compositional/R/lc.glm2.R | 39 ++-- Compositional-6.8/Compositional/R/mix.compnorm.contour.R | 2 Compositional-6.8/Compositional/R/mixdiri.contour.R | 2 Compositional-6.8/Compositional/R/scls.R |only Compositional-6.8/Compositional/R/scls.betest.R |only Compositional-6.8/Compositional/R/scls.indeptest.R |only Compositional-6.8/Compositional/R/scls2.R |only Compositional-6.8/Compositional/R/skewnorm.contour.R | 2 Compositional-6.8/Compositional/R/ternary.R | 61 +++---- Compositional-6.8/Compositional/R/ternary.coef.R |only Compositional-6.8/Compositional/R/ternary.coefcr.R |only Compositional-6.8/Compositional/R/ternary.mcr.R |only Compositional-6.8/Compositional/R/ternary.reg.R | 4 Compositional-6.8/Compositional/R/tflr.R | 87 +++++++++- Compositional-6.8/Compositional/R/tflr.betest.R |only Compositional-6.8/Compositional/R/tflr.indeptest.R |only Compositional-6.8/Compositional/R/tflr2.R |only Compositional-6.8/Compositional/man/Compositional-package.Rd | 7 Compositional-6.8/Compositional/man/alfa.lasso.Rd |only Compositional-6.8/Compositional/man/alfalasso.tune.Rd |only Compositional-6.8/Compositional/man/ascls.Rd |only Compositional-6.8/Compositional/man/atflr.Rd |only Compositional-6.8/Compositional/man/cv.ascls.Rd |only Compositional-6.8/Compositional/man/cv.atflr.Rd |only Compositional-6.8/Compositional/man/cv.scls.Rd |only Compositional-6.8/Compositional/man/cv.tflr.Rd | 21 +- Compositional-6.8/Compositional/man/scls.Rd |only Compositional-6.8/Compositional/man/scls.betest.Rd |only Compositional-6.8/Compositional/man/scls.indeptest.Rd |only Compositional-6.8/Compositional/man/scls2.Rd |only Compositional-6.8/Compositional/man/ternary.Rd | 30 +-- Compositional-6.8/Compositional/man/ternary.coef.Rd |only Compositional-6.8/Compositional/man/ternary.coefcr.Rd |only Compositional-6.8/Compositional/man/ternary.mcr.Rd |only Compositional-6.8/Compositional/man/ternary.reg.Rd | 2 Compositional-6.8/Compositional/man/tflr.Rd | 27 +-- Compositional-6.8/Compositional/man/tflr.betest.Rd |only Compositional-6.8/Compositional/man/tflr.indeptest.Rd |only Compositional-6.8/Compositional/man/tflr2.Rd |only 67 files changed, 275 insertions(+), 164 deletions(-)
Title: Shiny App - Generate a Pdf Invoice with 'Rmarkdown'
Description: Generate an invoice containing a header with invoice number and businesses details. The invoice table contains
any of: salary, one-liner costs, grouped costs. Under the table signature and bank account details appear.
Pages are numbered when more than one. Source .json and .Rmd files are editable in the app. A .csv file with raw data can be downloaded.
This package includes functions for getting exchange rates between currencies based on
'quantmod' (Ryan and Ulrich, 2023 <https://CRAN.R-project.org/package=quantmod>).
Author: Fernando Roa [aut, cre]
Maintainer: Fernando Roa <froao@unal.edu.co>
Diff between shinyInvoice versions 0.0.4 dated 2023-12-21 and 0.0.5 dated 2024-04-01
shinyInvoice-0.0.4/shinyInvoice/inst/shinyApps/invoice_app/app/utils/reactive_saver.R |only shinyInvoice-0.0.5/shinyInvoice/DESCRIPTION | 8 shinyInvoice-0.0.5/shinyInvoice/MD5 | 58 +- shinyInvoice-0.0.5/shinyInvoice/NEWS.md | 9 shinyInvoice-0.0.5/shinyInvoice/R/continue_sequence.R | 81 ++ shinyInvoice-0.0.5/shinyInvoice/R/get_exchange_rates.R | 1 shinyInvoice-0.0.5/shinyInvoice/README.md | 3 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/README.md | 2 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/invoice.Rmd | 70 +- shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/json/consultant_account.json | 3 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/logic/input_fun.R | 2 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/logic/save_files.R | 3 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/main.R | 14 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/modules/account.R | 19 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/modules/bump_month.R | 21 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/modules/currency_date.R | 138 ++--- shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/modules/grouped_costs/__init__.R | 2 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/modules/grouped_costs/grouped_element.R | 5 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/modules/json_ace.R | 5 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/modules/oneliner/__init__.R | 2 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/modules/oneliner/single_oneliner.R | 5 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/modules/rmd_ace/__init__.R | 2 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/modules/salary.R | 103 ++- shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/static/css/app.min.css | 2 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/styles/main.scss | 99 +-- shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/utils/continue_sequence.R | 79 ++ shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/app/utils/json_to_reactive_values.R |only shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/dependencies.R | 1 shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/renv.lock | 271 ++++------ shinyInvoice-0.0.5/shinyInvoice/inst/shinyApps/invoice_app/renv/activate.R | 39 + shinyInvoice-0.0.5/shinyInvoice/man/GetExchangeRates.Rd | 1 31 files changed, 661 insertions(+), 387 deletions(-)
Title: Rank in Network Meta-Analysis
Description: A supportive collection of functions for gathering and plotting treatment ranking metrics after network meta-analysis.
Author: Chiehfeng Chen [aut] ,
Enoch Kang [aut, cre, trl] ,
Wen-Hsuan Hou [aut] ,
Jin-Hua Chen [aut] ,
Yu-Chieh Chuang [aut] ,
Edwin Chan [aut]
Maintainer: Enoch Kang <y.enoch.kang@gmail.com>
Diff between rankinma versions 0.2.1 dated 2024-03-08 and 0.2.2 dated 2024-04-01
DESCRIPTION | 8 MD5 | 26 +- NEWS.md | 28 ++ R/get_metrics.R | 341 +++++++++++++++++++++++++++------- R/plot_bar.R | 2 R/plot_beads.R | 188 ++++++++++++++---- R/plot_line.R | 4 R/set_metrics.R | 79 ++++--- inst/doc/An_overview_on_rankinma.R | 40 +++ inst/doc/An_overview_on_rankinma.Rmd | 55 ++++- inst/doc/An_overview_on_rankinma.html | 35 ++- man/GetMetrics.Rd | 10 man/PlotBeads.Rd | 6 vignettes/An_overview_on_rankinma.Rmd | 55 ++++- 14 files changed, 681 insertions(+), 196 deletions(-)
Title: Heuristic Capacitated Vehicle Routing Problem Solver
Description: Implements the Clarke-Wright algorithm to find a quasi-optimal solution to the Capacitated Vehicle Routing Problem. See Clarke, G. and Wright, J.R. (1964) <doi:10.1287/opre.12.4.568> for details. The implementation is accompanied by helper functions to inspect its solution.
Author: Lukas Schneiderbauer [aut, cre, cph]
Maintainer: Lukas Schneiderbauer <lukas.schneiderbauer@gmail.com>
Diff between heumilkr versions 0.1.0 dated 2024-01-10 and 0.2.0 dated 2024-04-01
heumilkr-0.1.0/heumilkr/man/figures/README-example-1.png |only heumilkr-0.2.0/heumilkr/DESCRIPTION | 17 ++- heumilkr-0.2.0/heumilkr/MD5 | 46 +++++++--- heumilkr-0.2.0/heumilkr/NAMESPACE | 8 + heumilkr-0.2.0/heumilkr/NEWS.md | 14 ++- heumilkr-0.2.0/heumilkr/R/autoplot.R | 4 heumilkr-0.2.0/heumilkr/R/clarke_wright.R | 14 +-- heumilkr-0.2.0/heumilkr/R/cvrplib.R |only heumilkr-0.2.0/heumilkr/R/data.R |only heumilkr-0.2.0/heumilkr/R/heumilkr_solution.R | 22 ++++ heumilkr-0.2.0/heumilkr/R/plumber.R |only heumilkr-0.2.0/heumilkr/README.md | 2 heumilkr-0.2.0/heumilkr/build/vignette.rds |only heumilkr-0.2.0/heumilkr/data |only heumilkr-0.2.0/heumilkr/inst |only heumilkr-0.2.0/heumilkr/man/clarke_wright.Rd | 9 - heumilkr-0.2.0/heumilkr/man/clarke_wright_cvrplib.Rd |only heumilkr-0.2.0/heumilkr/man/cvrplib_A.Rd |only heumilkr-0.2.0/heumilkr/man/cvrplib_B.Rd |only heumilkr-0.2.0/heumilkr/man/cvrplib_E.Rd |only heumilkr-0.2.0/heumilkr/man/cvrplib_F.Rd |only heumilkr-0.2.0/heumilkr/man/cvrplib_Tai.Rd |only heumilkr-0.2.0/heumilkr/man/cvrplib_download.Rd |only heumilkr-0.2.0/heumilkr/man/cvrplib_ls.Rd |only heumilkr-0.2.0/heumilkr/man/figures/README-benchmark_runtime-1.png |binary heumilkr-0.2.0/heumilkr/man/figures/README-example_plot-1.png |binary heumilkr-0.2.0/heumilkr/tests/testthat/test-clarke_wright.R | 14 +++ heumilkr-0.2.0/heumilkr/tests/testthat/test-cvrplib.R |only heumilkr-0.2.0/heumilkr/vignettes |only 29 files changed, 116 insertions(+), 34 deletions(-)
Title: Data for Sunlight Spectra
Description: Data for the extraterrestrial solar spectral irradiance and ground
level solar spectral irradiance and irradiance. In addition data for
shade light under vegetation and irradiance time series from different
broadband sensors. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, trl, cre]
,
T. Matthew Robson [ctb] ,
Saara M. Hartiakinen [ctb] ,
Anders Lindfors [ctb],
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologySun versions 0.4.1 dated 2019-03-27 and 0.5.0 dated 2024-04-01
photobiologySun-0.4.1/photobiologySun/NEWS |only photobiologySun-0.4.1/photobiologySun/data/datalist |only photobiologySun-0.5.0/photobiologySun/DESCRIPTION | 24 photobiologySun-0.5.0/photobiologySun/MD5 | 62 - photobiologySun-0.5.0/photobiologySun/NEWS.md |only photobiologySun-0.5.0/photobiologySun/R/example.solar.irrad.data.r | 34 photobiologySun-0.5.0/photobiologySun/R/example.solar.spectra.data.r | 54 + photobiologySun-0.5.0/photobiologySun/R/photobiologySun.R | 4 photobiologySun-0.5.0/photobiologySun/R/sun-reference-mspct.r | 8 photobiologySun-0.5.0/photobiologySun/README.md | 211 +++++ photobiologySun-0.5.0/photobiologySun/build/partial.rdb |only photobiologySun-0.5.0/photobiologySun/build/vignette.rds |binary photobiologySun-0.5.0/photobiologySun/data/broad-band.rda |binary photobiologySun-0.5.0/photobiologySun/data/gap-mspct.rda |binary photobiologySun-0.5.0/photobiologySun/data/sun-hourly-spct.rda |binary photobiologySun-0.5.0/photobiologySun/data/sun-may-morning-spct.rda |binary photobiologySun-0.5.0/photobiologySun/data/sun-reference-mspct.rda |binary photobiologySun-0.5.0/photobiologySun/inst/CITATION | 13 photobiologySun-0.5.0/photobiologySun/inst/doc/r4p-introduction.R |only photobiologySun-0.5.0/photobiologySun/inst/doc/r4p-introduction.Rmd |only photobiologySun-0.5.0/photobiologySun/inst/doc/r4p-introduction.html |only photobiologySun-0.5.0/photobiologySun/inst/doc/user-guide.R | 50 - photobiologySun-0.5.0/photobiologySun/inst/doc/user-guide.Rmd | 23 photobiologySun-0.5.0/photobiologySun/inst/doc/user-guide.html | 373 +++++----- photobiologySun-0.5.0/photobiologySun/man/figures |only photobiologySun-0.5.0/photobiologySun/man/gap.mspct.Rd | 14 photobiologySun-0.5.0/photobiologySun/man/irrad_Kipp.data.Rd | 10 photobiologySun-0.5.0/photobiologySun/man/photobiologySun-package.Rd | 23 photobiologySun-0.5.0/photobiologySun/man/ppfd_BF.data.Rd | 25 photobiologySun-0.5.0/photobiologySun/man/ppfd_LICOR.data.Rd | 15 photobiologySun-0.5.0/photobiologySun/man/sun_hourly_august.spct.Rd | 18 photobiologySun-0.5.0/photobiologySun/man/sun_hourly_june.spct.Rd | 21 photobiologySun-0.5.0/photobiologySun/man/sun_may_morning.spct.Rd | 12 photobiologySun-0.5.0/photobiologySun/man/sun_reference.mspct.Rd | 14 photobiologySun-0.5.0/photobiologySun/vignettes/r4p-introduction.Rmd |only photobiologySun-0.5.0/photobiologySun/vignettes/user-guide.Rmd | 23 36 files changed, 682 insertions(+), 349 deletions(-)
More information about photobiologySun at CRAN
Permanent link
Title: Multilevel Hidden Markov Models Using Bayesian Estimation
Description: An implementation of the multilevel (also known as mixed or random
effects) hidden Markov model using Bayesian estimation in R. The multilevel
hidden Markov model (HMM) is a generalization of the well-known hidden
Markov model, for the latter see Rabiner (1989) <doi:10.1109/5.18626>. The
multilevel HMM is tailored to accommodate (intense) longitudinal data of
multiple individuals simultaneously, see e.g., de Haan-Rietdijk et al.
<doi:10.1080/00273171.2017.1370364>. Using a multilevel framework, we allow
for heterogeneity in the model parameters (transition probability matrix and
conditional distribution), while estimating one overall HMM. The model can
be fitted on multivariate data with either a categorical, normal, or Poisson
distribution, and include individual level covariates (allowing for e.g.,
group comparisons on model parameters). Parameters are estimated using
Bayesian estimation utilizing the forward-backward recursion within a hybrid
Metropolis within Gibbs samp [...truncated...]
Author: Emmeke Aarts [aut, cre],
Sebastian Mildiner Moraga [aut]
Maintainer: Emmeke Aarts <e.aarts@uu.nl>
Diff between mHMMbayes versions 1.0.0 dated 2023-10-02 and 1.1.0 dated 2024-04-01
DESCRIPTION | 14 MD5 | 78 ++-- NAMESPACE | 8 NEWS.md | 37 ++ R/forward_prob_cpp.R | 18 + R/logl_pois.R |only R/mHMM.R | 560 +++++++++++++++++++++++++++----- R/mHMMbayes-package.R | 4 R/mnl_RW_once.R | 4 R/obtain_emiss.R | 23 + R/pd_RW_emiss_cat.R | 4 R/pd_RW_emiss_count.R |only R/plot.mHMM.R | 32 + R/pois_RW_once.R |only R/print.mHMM.R | 16 R/prior_emiss_cont.R | 19 - R/prior_emiss_count.R |only R/sim_mHMM.R | 358 +++++++++++++++++--- R/summary.mHMM.R | 8 R/utility_func_mHMM.R | 12 R/var_to_logvar.R |only R/vit_mHMM.R | 47 +- README.md | 193 +++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/estimation-mhmm.pdf |binary inst/doc/tutorial-mhmm.Rmd | 2 inst/doc/tutorial-mhmm.html | 19 - man/mHMM.Rd | 221 ++++++++++-- man/mHMMbayes-package.Rd | 6 man/pd_RW_emiss_cat.Rd | 4 man/pd_RW_emiss_count.Rd |only man/prior_emiss_cont.Rd | 12 man/prior_emiss_count.Rd |only man/sim_mHMM.Rd | 239 +++++++++++-- man/var_to_logvar.Rd |only man/vit_mHMM.Rd | 12 tests/testthat/test-mHMM.R | 9 tests/testthat/test-mHMM_count.R |only tests/testthat/test-obtain_logvar.R |only tests/testthat/test-plots_count.R |only tests/testthat/test-prior.R | 6 tests/testthat/test-prior_emiss_count.R |only tests/testthat/test-sim_mHMM.R | 68 +++ tests/testthat/test-vit_mHMM.R | 56 +++ vignettes/tutorial-mhmm.Rmd | 2 46 files changed, 1656 insertions(+), 435 deletions(-)
Title: 'BEAUti' from R
Description: 'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAUti 2' (which is part of 'BEAST2') is a GUI tool
that allows users to specify the many possible setups
and generates the XML file 'BEAST2' needs to run.
This package provides a way to create 'BEAST2' input
files without active user input, but using
R function calls instead.
Author: Richel J.C. Bilderbeek [aut, cre]
,
Joelle Barido-Sottani [rev] ,
David Winter [rev] ,
Paul Van Els [ctb] ,
Raphael Scherrer [ctb] ,
Yacine B. Chehida [ctb] ,
Katharine S. Walter [ctb] ,
Gary Napier [ctb] ,
Jason Griffiths [ctb] ,
Thijs Janzen [ctb] [...truncated...]
Maintainer: Richel J.C. Bilderbeek <rjcbilderbeek@gmail.com>
Diff between beautier versions 2.6.11 dated 2023-11-02 and 2.6.12 dated 2024-04-01
DESCRIPTION | 13 +++---- MD5 | 27 +++++++++------- R/create_beast2_input_beast.R | 2 + R/get_default_beast_namespace.R | 4 +- R/get_remove_hex_fun.R | 2 - R/rln_clock_model_to_xml_operators.R | 2 - R/rln_clock_model_to_xml_prior_distr.R | 4 +- R/yule_tree_prior_to_xml_operators.R | 3 + inst/doc/demo.html | 6 +-- inst/doc/examples.html | 4 +- inst/doc/inference_models.html | 4 +- inst/extdata/Felinecoronavirus_Envelope_1.txt |only inst/extdata/Felinecoronavirus_Envelope_1.xml |only inst/extdata/babette_issue_26.xml |only inst/extdata/issue_142.xml |only inst/extdata/rln_and_tipdates_babette_issue_26_v2_6.xml |only man/get_remove_hex_fun.Rd | 2 - 17 files changed, 42 insertions(+), 31 deletions(-)
Title: Animal Movement Tools
Description: Manage and analyze animal movement data. The functionality of
'amt' includes methods to calculate home ranges, track statistics
(e.g. step lengths, speed, or turning angles), prepare data for
fitting habitat selection analyses, and simulation of space-use from
fitted step-selection functions.
Author: Johannes Signer [aut, cre],
Brian Smith [ctb],
Bjoern Reineking [ctb],
Ulrike Schlaegel [ctb],
John Fieberg [ctb],
Josh O'Brien [ctb],
Bernardo Niebuhr [ctb],
Alec Robitaille [ctb],
Avgar Tal [ctb],
Scott LaPoint [dtc]
Maintainer: Johannes Signer <jsigner@gwdg.de>
Diff between amt versions 0.2.1.0 dated 2023-03-28 and 0.2.2.0 dated 2024-04-01
DESCRIPTION | 14 - MD5 | 92 ++++----- NAMESPACE | 7 NEWS.md | 8 R/coercion.R | 58 ----- R/difference.R | 2 R/distributions.R | 1 R/extract_covariates.R | 1 R/insepct.R | 6 R/log_rss.R | 6 R/make_trast.R | 1 R/nsd.R | 2 R/random_points.R | 3 R/random_steps.R | 16 + R/simulate.R | 29 +- R/steps.R | 2 R/time_of_day.R | 2 R/uhc_plots.R | 40 +++- R/validate.R | 12 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/p1_getting_started.R | 2 inst/doc/p1_getting_started.html | 347 +++++++++++++++++------------------ inst/doc/p2_hr.R | 6 inst/doc/p2_hr.html | 285 ++++++++++++++--------------- inst/doc/p3_rsf.R | 14 - inst/doc/p3_rsf.html | 257 ++++++++++++-------------- inst/doc/p4_SSF.R | 2 inst/doc/p4_SSF.html | 371 ++++++++++++++++++-------------------- inst/doc/p5_other_packages.R | 7 inst/doc/p5_other_packages.Rmd | 8 inst/doc/p5_other_packages.html | 249 +++++++++++-------------- inst/doc/p6_uhc_plots.R | 2 inst/doc/p6_uhc_plots.html | 362 ++++++++++++++++++------------------- inst/tinytest/test_make_trast.R |only inst/tinytest/test_random_steps.R | 8 inst/tinytest/test_steps.R | 5 man/bootstrap_logrss.Rd | 4 man/calc_w.Rd | 3 man/check_factors.Rd | 6 man/coercion.Rd | 6 man/diff.Rd | 2 man/extract_covariates.Rd | 1 man/issf_drop_stratum.Rd |only man/nsd.Rd | 2 man/prep_test_dat.Rd | 1 man/redistribution_kernel.Rd | 10 - vignettes/p5_other_packages.Rmd | 8 48 files changed, 1108 insertions(+), 1162 deletions(-)
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: Functions to accompany A. Gelman and J. Hill, Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge University Press, 2007.
Author: Andrew Gelman [aut],
Yu-Sung Su [aut, cre] ,
Masanao Yajima [ctb],
Jennifer Hill [ctb],
Maria Grazia Pittau [ctb],
Jouni Kerman [ctb],
Tian Zheng [ctb],
Vincent Dorie [ctb]
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>
Diff between arm versions 1.13-1 dated 2022-08-28 and 1.14-4 dated 2024-04-01
DESCRIPTION | 14 ++++++++------ MD5 | 6 +++--- R/AllInternal.R | 8 ++++---- R/display.R | 2 +- 4 files changed, 16 insertions(+), 14 deletions(-)
Title: A Grammar of Interactive Graphics
Description: Provides a bridge between the 'loon' and 'ggplot2' packages. Extends the grammar of ggplot to add clauses to create interactive 'loon' plots. Existing ggplot(s) can be turned into interactive 'loon' plots and 'loon' plots into static ggplot(s); the function 'loon.ggplot()' is the bridge from one plot structure to the other.
Author: Zehao Xu [aut, cre],
R. Wayne Oldford [aut]
Maintainer: Zehao Xu <z267xu@gmail.com>
Diff between loon.ggplot versions 1.3.3 dated 2022-11-12 and 1.3.4 dated 2024-04-01
DESCRIPTION | 12 MD5 | 42 +-- NAMESPACE | 6 R/ggplot2loon-ggplot.R | 1 R/loon2ggplot-l_layer_scatterplot.R | 1 R/loon2ggplot-l_serialaxes.R | 15 - R/loon2ggplot.R | 15 - R/scale_multi.R | 2 build/vignette.rds |binary inst/doc/ggplot2loon.html | 354 ++++++++++++++--------------- inst/doc/grammarOfInteractiveGraphics.R | 20 - inst/doc/grammarOfInteractiveGraphics.html | 282 +++++++++++------------ inst/doc/linking.R | 6 inst/doc/linking.html | 304 ++++++++++++------------ inst/doc/loon2ggplot.html | 92 +++---- inst/doc/pipes.R | 2 inst/doc/pipes.html | 176 +++++++------- inst/doc/thereAndBackAgain.html | 334 +++++++++++++-------------- man/geom_textGlyph-deprecated.Rd | 2 man/loon.ggplot-package.Rd | 3 man/loon2ggplot.Rd | 15 - man/scale_multi.Rd | 2 22 files changed, 848 insertions(+), 838 deletions(-)
Title: Download Spatial Datasets of Peru
Description: Provides convenient access to the official spatial datasets of Peru as 'sf' objects in R. This package includes a wide range of geospatial data covering various aspects of Peruvian geography, such as: administrative divisions (Source: INEI <https://ide.inei.gob.pe/>), protected natural areas (Source: GEO ANP - SERNANP <https://geo.sernanp.gob.pe/visorsernanp/>). All datasets are harmonized in terms of attributes, projection, and topology, ensuring consistency and ease of use for spatial analysis and visualization.
Author: Paul E. Santos Andrade [aut, cre]
Maintainer: Paul E. Santos Andrade <paulefrens@gmail.com>
Diff between geoperu versions 0.0.0.1 dated 2024-03-21 and 0.0.0.2 dated 2024-04-01
DESCRIPTION | 8 MD5 | 18 +- NAMESPACE | 1 R/get_anp_peru.R |only R/global.R | 2 R/utils.R | 256 +++++++++++++++++++++++++++++++ README.md | 44 ++++- inst |only man/check_connection_anp.Rd |only man/download_gpkg_anp.Rd |only man/download_metadata_anp.Rd |only man/figures/README-unnamed-chunk-3-1.png |only man/get_anp_peru.Rd |only man/select_metadata_anp.Rd |only 14 files changed, 314 insertions(+), 15 deletions(-)
Title: Indices of Effect Size
Description: Provide utilities to work with indices of effect size for a wide
variety of models and hypothesis tests (see list of supported models using
the function 'insight::supported_models()'), allowing computation of and
conversion between indices such as Cohen's d, r, odds, etc.
References: Ben-Shachar et al. (2020) <doi:10.21105/joss.02815>.
Author: Mattan S. Ben-Shachar [aut, cre]
,
Dominique Makowski [aut] ,
Daniel Luedecke [aut] ,
Indrajeet Patil [aut] ,
Brenton M. Wiernik [aut] ,
Remi Theriault [aut] ,
Ken Kelley [ctb],
David Stanley [ctb],
Aaron Caldwell [ctb] ,
Jessica Burnett [rev] ,
Johan [...truncated...]
Maintainer: Mattan S. Ben-Shachar <mattansb@msbstats.info>
Diff between effectsize versions 0.8.6 dated 2023-09-14 and 0.8.7 dated 2024-04-01
DESCRIPTION | 24 ++-- LICENSE |only MD5 | 150 ++++++++++++++-------------- NAMESPACE | 9 - NEWS.md | 16 ++ R/cohens_d.R | 66 +++++++----- R/cohens_g.R | 7 - R/common_language.R | 7 + R/convert_stat_chisq.R | 7 - R/datasets.R | 30 +++++ R/docs_extra.R | 9 - R/effectsize-package.R | 5 R/effectsize.R | 8 + R/effectsize.htest.R | 9 + R/eta_squared-main.R | 5 R/eta_squared-methods.R | 5 R/interpret.R | 4 R/interpret_r.R | 4 R/mahalanobis_D.R | 1 R/print.effectsize_table.R | 3 R/rank_diff.R | 3 R/repeated_measures_d.R |only R/sysdata.rda |binary R/utils_ci.R | 43 +++----- R/utils_validate_input_data.R | 87 +++++++++++++++- R/xtab_diff.R | 11 -- README.md | 52 +++++---- build/partial.rdb |binary build/vignette.rds |binary data/rouder2016.rdata |only inst/WORDLIST | 18 ++- inst/doc/anovaES.R | 14 +- inst/doc/anovaES.html | 2 inst/doc/convert_r_d_OR.R | 4 inst/doc/effectsize.R | 2 inst/doc/effectsize_API.R | 2 inst/doc/from_test_statistics.R | 28 ++--- inst/doc/from_test_statistics.Rmd | 6 - inst/doc/from_test_statistics.html | 6 - inst/doc/standardized_differences.R | 30 ++++- inst/doc/standardized_differences.Rmd | 34 +++++- inst/doc/standardized_differences.html | 171 +++++++++++++++++++++----------- inst/doc/statistical_power.R |only inst/doc/statistical_power.Rmd |only inst/doc/statistical_power.html |only inst/doc/xtabs.R | 4 man/F_to_eta2.Rd | 4 man/Music_preferences.Rd | 1 man/Music_preferences2.Rd | 1 man/RCT_table.Rd | 3 man/Smoking_FASD.Rd | 3 man/cohens_d.Rd | 19 ++- man/cohens_g.Rd | 7 - man/convert_chisq.Rd | 7 - man/effectsize-package.Rd | 7 - man/effectsize.Rd | 12 ++ man/effectsize_CIs.Rd | 12 -- man/eta_squared.Rd | 4 man/food_class.Rd | 3 man/hardlyworking.Rd | 3 man/interpret_r.Rd | 3 man/mahalanobis_d.Rd | 3 man/means_ratio.Rd | 3 man/oddsratio.Rd | 7 - man/p_superiority.Rd | 3 man/phi.Rd | 4 man/r2_semipartial.Rd | 4 man/rank_biserial.Rd | 5 man/repeated_measures_d.Rd |only man/rouder2016.Rd |only man/screening_test.Rd | 5 tests/testthat/test-cohens_d.R | 11 +- tests/testthat/test-convert_statistic.R | 5 tests/testthat/test-effectsize.R | 75 ++++++++++++-- tests/testthat/test-eta_squared.R | 79 ++++++++++---- tests/testthat/test-rm_d.R |only tests/testthat/test-xtab.R | 8 + vignettes/bibliography.bib | 32 +++++ vignettes/from_test_statistics.Rmd | 6 - vignettes/standardized_differences.Rmd | 34 +++++- vignettes/statistical_power.Rmd |only 81 files changed, 864 insertions(+), 395 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A C/C++ based package for advanced data transformation and
statistical computing in R that is extremely fast, class-agnostic, robust and
programmer friendly. Core functionality includes a rich set of S3 generic grouped
and weighted statistical functions for vectors, matrices and data frames, which
provide efficient low-level vectorizations, OpenMP multithreading, and skip missing
values by default. These are integrated with fast grouping and ordering algorithms
(also callable from C), and efficient data manipulation functions. The package also
provides a flexible and rigorous approach to time series and panel data in R.
It further includes fast functions for common statistical procedures, detailed
(grouped, weighted) summary statistics, powerful tools to work with nested data,
fast data object conversions, functions for memory efficient R programming, and
helpers to effectively deal with variable labels, attributes, and missing data.
It is well integrated with base R classes, 'dplyr'/' [...truncated...]
Author: Sebastian Krantz [aut, cre] ,
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Morgan Jacob [ctb],
Dirk Eddelbuettel [ctb],
Laurent Berge [ctb],
Kevin Tappe [ctb],
R Core Team and contributors worldwide [ctb],
Martyn Plummer [cph],
1999-2016 The R Core Team [...truncated...]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 2.0.11 dated 2024-03-21 and 2.0.12 dated 2024-04-01
DESCRIPTION | 8 +-- MD5 | 28 +++++------ NEWS.md | 4 + R/pivot.R | 12 ++--- inst/doc/collapse_documentation.html | 4 - inst/doc/collapse_for_tidyverse_users.html | 4 - man/GGDC10S.Rd | 2 src/fmode.c | 8 +-- src/fndistinct.c | 4 - src/fnth_fmedian_fquantile.c | 1 src/kit.h | 2 src/kit_dup.c | 14 ++--- src/match.c | 69 +++++++++++++++++++---------- src/pivot.c | 4 - src/small_helper.c | 8 ++- 15 files changed, 103 insertions(+), 69 deletions(-)
Title: Tidying Methods for Mixed Models
Description: Convert fitted objects from various R mixed-model packages
into tidy data frames along the lines of the 'broom' package.
The package provides three
S3 generics for each model: tidy(), which summarizes a model's statistical findings such as
coefficients of a regression; augment(), which adds columns to the original
data such as predictions, residuals and cluster assignments; and glance(), which
provides a one-row summary of model-level statistics.
Author: Ben Bolker [aut, cre] ,
David Robinson [aut],
Dieter Menne [ctb],
Jonah Gabry [ctb],
Paul Buerkner [ctb],
Christopher Hua [ctb],
William Petry [ctb] ,
Joshua Wiley [ctb] ,
Patrick Kennedy [ctb],
Eduard Szoecs [ctb] ,
Indrajeet Patil [ctb],
Vincent Are [...truncated...]
Maintainer: Ben Bolker <bolker@mcmaster.ca>
Diff between broom.mixed versions 0.2.9.4 dated 2022-04-17 and 0.2.9.5 dated 2024-04-01
broom.mixed-0.2.9.4/broom.mixed/inst/NEWS.Rd |only broom.mixed-0.2.9.5/broom.mixed/DESCRIPTION | 29 broom.mixed-0.2.9.5/broom.mixed/MD5 | 76 +- broom.mixed-0.2.9.5/broom.mixed/NAMESPACE | 6 broom.mixed-0.2.9.5/broom.mixed/NEWS.md |only broom.mixed-0.2.9.5/broom.mixed/R/brms_tidiers.R | 74 +- broom.mixed-0.2.9.5/broom.mixed/R/broom_utils.R |only broom.mixed-0.2.9.5/broom.mixed/R/glmmTMB_tidiers.R | 75 +- broom.mixed-0.2.9.5/broom.mixed/R/lme4_tidiers.R | 22 broom.mixed-0.2.9.5/broom.mixed/R/lqmm_tidiers.R |only broom.mixed-0.2.9.5/broom.mixed/R/mcmc_tidiers.R | 2 broom.mixed-0.2.9.5/broom.mixed/R/mediation_tidiers.R |only broom.mixed-0.2.9.5/broom.mixed/R/nlme_tidiers.R | 40 - broom.mixed-0.2.9.5/broom.mixed/R/rstanarm_tidiers.R | 40 - broom.mixed-0.2.9.5/broom.mixed/build/vignette.rds |binary broom.mixed-0.2.9.5/broom.mixed/inst/doc/broom_mixed_intro.html | 321 +++++----- broom.mixed-0.2.9.5/broom.mixed/inst/extdata/MCMCglmm_example.rda |binary broom.mixed-0.2.9.5/broom.mixed/inst/extdata/R2jags_example.rds |binary broom.mixed-0.2.9.5/broom.mixed/inst/extdata/brms_example.rda |binary broom.mixed-0.2.9.5/broom.mixed/inst/extdata/gamlss_example.rds |binary broom.mixed-0.2.9.5/broom.mixed/inst/extdata/glmmADMB_example.rda |binary broom.mixed-0.2.9.5/broom.mixed/inst/extdata/glmmTMB_example.rda |binary broom.mixed-0.2.9.5/broom.mixed/inst/extdata/lme4_example.rda |binary broom.mixed-0.2.9.5/broom.mixed/inst/extdata/mediation_example.rda |only broom.mixed-0.2.9.5/broom.mixed/inst/extdata/nlme_example.rda |binary broom.mixed-0.2.9.5/broom.mixed/inst/extdata/rstan_example.rds |binary broom.mixed-0.2.9.5/broom.mixed/inst/extdata/rstanarm_example.rda |only broom.mixed-0.2.9.5/broom.mixed/inst/extdata/rstanarm_example.rds |binary broom.mixed-0.2.9.5/broom.mixed/man/brms_tidiers.Rd | 15 broom.mixed-0.2.9.5/broom.mixed/man/figures |only broom.mixed-0.2.9.5/broom.mixed/man/lme4_tidiers.Rd | 4 broom.mixed-0.2.9.5/broom.mixed/man/mediation_tidiers.Rd |only broom.mixed-0.2.9.5/broom.mixed/man/nlme_tidiers.Rd | 1 broom.mixed-0.2.9.5/broom.mixed/man/rstanarm_tidiers.Rd | 27 broom.mixed-0.2.9.5/broom.mixed/man/tidy.lqmm.Rd |only broom.mixed-0.2.9.5/broom.mixed/man/tidy.varFunc.Rd | 2 broom.mixed-0.2.9.5/broom.mixed/tests/testthat/test-alltibbles.R | 2 broom.mixed-0.2.9.5/broom.mixed/tests/testthat/test-brms.R | 35 - broom.mixed-0.2.9.5/broom.mixed/tests/testthat/test-gamlss.R | 3 broom.mixed-0.2.9.5/broom.mixed/tests/testthat/test-glmmTMB.R | 35 + broom.mixed-0.2.9.5/broom.mixed/tests/testthat/test-lme.R |only broom.mixed-0.2.9.5/broom.mixed/tests/testthat/test-lme4.R | 3 broom.mixed-0.2.9.5/broom.mixed/tests/testthat/test-mediate.R |only broom.mixed-0.2.9.5/broom.mixed/tests/testthat/test-nlme.R | 36 + broom.mixed-0.2.9.5/broom.mixed/tests/testthat/test-rstanarm.R | 19 45 files changed, 598 insertions(+), 269 deletions(-)
Title: Utilities for Handling Strings and Text
Description: Utilities for handling character vectors
that store human-readable text (either plain or with
markup, such as HTML or LaTeX). The package provides,
in particular, functions that help with the
preparation of plain-text reports, e.g. for expanding
and aligning strings that form the lines of such
reports. The package also provides generic functions for
transforming R objects to HTML and to plain text.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between textutils versions 0.3-2 dated 2023-04-01 and 0.4-1 dated 2024-04-01
textutils-0.3-2/textutils/inst/unitTests |only textutils-0.4-1/textutils/DESCRIPTION | 8 +- textutils-0.4-1/textutils/MD5 | 40 ++++++------ textutils-0.4-1/textutils/NAMESPACE | 9 ++ textutils-0.4-1/textutils/NEWS | 10 +++ textutils-0.4-1/textutils/R/functions.R | 56 ++++++++++++++++-- textutils-0.4-1/textutils/build/partial.rdb |binary textutils-0.4-1/textutils/build/vignette.rds |binary textutils-0.4-1/textutils/inst/doc/btable.Rnw | 16 ++--- textutils-0.4-1/textutils/inst/doc/btable.pdf |binary textutils-0.4-1/textutils/inst/tinytest/test_HTMLrm.R |only textutils-0.4-1/textutils/inst/tinytest/test_toHTML.R | 7 ++ textutils-0.4-1/textutils/man/HTMLdecode.Rd | 46 +++++++++----- textutils-0.4-1/textutils/man/TeXencode.Rd | 6 - textutils-0.4-1/textutils/man/TeXunits.Rd | 6 - textutils-0.4-1/textutils/man/dctable.Rd | 2 textutils-0.4-1/textutils/man/rmrp.Rd | 4 - textutils-0.4-1/textutils/man/strexp.Rd | 4 - textutils-0.4-1/textutils/man/textutils-package.Rd | 2 textutils-0.4-1/textutils/man/toHTML.Rd | 52 ++++++++++------ textutils-0.4-1/textutils/man/valign.Rd | 8 +- textutils-0.4-1/textutils/vignettes/btable.Rnw | 16 ++--- 22 files changed, 194 insertions(+), 98 deletions(-)
Title: Utilities for Dates and Times
Description: Utilities for handling dates and times, such
as selecting particular days of the week or month,
formatting timestamps as required by RSS feeds, or
converting timestamp representations of other software
(such as 'MATLAB' and 'Excel') to R. The package is
lightweight (no dependencies, pure R implementations) and
relies only on R's standard classes to represent dates
and times ('Date' and 'POSIXt'); it aims to provide
efficient implementations, through vectorisation and the
use of R's native numeric representations of timestamps
where possible.
Author: Enrico Schumann [aut, cre] ,
Unicode, Inc. [dtc, cph]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between datetimeutils versions 0.6-3 dated 2023-11-07 and 0.6-4 dated 2024-04-01
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 4 ++++ build/partial.rdb |binary build/vignette.rds |binary data/tznames.RData |binary inst/doc/datetimeutils_examples.Rnw | 2 +- inst/doc/datetimeutils_examples.pdf |binary vignettes/datetimeutils_examples.Rnw | 2 +- 9 files changed, 18 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-06 0.1.3
2021-01-10 0.1.2
2020-10-27 0.1.1
2020-10-23 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-29 0.2.6
2023-05-21 0.2.5
2022-10-27 0.2.4
2022-10-12 0.2.3
2021-09-03 0.2.2
2021-08-05 0.1.3
2021-07-28 0.1.2