Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-24 0.0.5
2020-12-11 0.0.4
2020-09-28 0.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-19 1.1
Title: Functions Relating to the Smoothing of Numerical Data
Description: A collection of methods for smoothing numerical data, commencing
with a port of the Matlab gaussian window smoothing function. In addition,
several functions typically used in smoothing of financial data are included.
Author: Nicholas Hamilton
Maintainer: Nicholas Hamilton <n.hamilton@unsw.edu.au>
Diff between smoother versions 1.1 dated 2015-04-16 and 1.3 dated 2024-04-02
DESCRIPTION | 15 ++++++----- MD5 | 22 ++++++++-------- NEWS | 5 +++ R/functions.R | 62 +++++++++++++++++++-------------------------- R/onLoad.R | 1 R/smoother-package.R | 5 +-- R/smth-gaussian.R | 69 ++++++++++++++++++--------------------------------- R/smth.R | 3 -- man/smoother.Rd | 24 ++++++----------- man/smth.Rd | 51 ++++++++++++++++--------------------- man/smth.gaussian.Rd | 37 +++++++++++++-------------- man/smth.options.Rd | 27 +++++++++---------- 12 files changed, 142 insertions(+), 179 deletions(-)
Title: Fixed Rank Kriging
Description: A tool for spatial/spatio-temporal modelling and prediction with large datasets. The approach models the field, and hence the covariance function, using a set of basis functions. This fixed-rank basis-function representation facilitates the modelling of big data, and the method naturally allows for non-stationary, anisotropic covariance functions. Discretisation of the spatial domain into so-called basic areal units (BAUs) facilitates the use of observations with varying support (i.e., both point-referenced and areal supports, potentially simultaneously), and prediction over arbitrary user-specified regions. `FRK` also supports inference over various manifolds, including the 2D plane and 3D sphere, and it provides helper functions to model, fit, predict, and plot with relative ease. Version 2.0.0 and above also supports the modelling of non-Gaussian data (e.g., Poisson, binomial, negative-binomial, gamma, and inverse-Gaussian) by employing a generalised linear mixed model (GLMM) framew [...truncated...]
Author: Andrew Zammit-Mangion [aut, cre],
Matthew Sainsbury-Dale [aut]
Maintainer: Andrew Zammit-Mangion <andrewzm@gmail.com>
Diff between FRK versions 2.2.2 dated 2024-02-26 and 2.2.3 dated 2024-04-02
DESCRIPTION | 10 +++---- MD5 | 12 ++++----- R/SRE.R | 2 - inst/CITATION | 56 +++++++++++++++++++++--------------------- inst/doc/FRK_intro.pdf |binary inst/doc/FRK_non-Gaussian.pdf |binary man/SRE.Rd | 2 - 7 files changed, 42 insertions(+), 40 deletions(-)
Title: Power Analysis and Data Simulation for Multilevel Models
Description: A declarative language for specifying multilevel models,
solving for population parameters based on specified variance-explained effect
size measures, generating data, and conducting power analyses to determine
sample size recommendations. The specification allows for any number of
within-cluster effects, between-cluster effects, covariate effects
at either level, and random coefficients. Moreover, the models do not
assume orthogonal effects, and predictors can correlate at either level
and accommodate models with multiple interaction effects.
Author: Brian T. Keller [aut, cre, cph]
Maintainer: Brian T. Keller <btkeller@missouri.edu>
Diff between mlmpower versions 1.0.7 dated 2024-03-29 and 1.0.8 dated 2024-04-02
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/base.R | 13 +++++++++---- 4 files changed, 19 insertions(+), 10 deletions(-)
Title: Fit Dynamic Structural Equation Models
Description: Applies dynamic structural equation models to time-series data
with generic and simplified specification for simultaneous and lagged
effects. Methods are described in Thorson et al. (2024)
"Dynamic structural equation models synthesize ecosystem dynamics
constrained by ecological mechanisms."
Author: James Thorson [aut, cre]
Maintainer: James Thorson <James.Thorson@noaa.gov>
Diff between dsem versions 1.2.0 dated 2024-03-31 and 1.2.1 dated 2024-04-02
dsem-1.2.0/dsem/R/utils.R |only dsem-1.2.0/dsem/man/checkDepPackageVersion.Rd |only dsem-1.2.0/dsem/man/reinstalling.Rd |only dsem-1.2.1/dsem/DESCRIPTION | 8 +++---- dsem-1.2.1/dsem/MD5 | 19 +++++++----------- dsem-1.2.1/dsem/NAMESPACE | 2 - dsem-1.2.1/dsem/NEWS.md | 5 ++++ dsem-1.2.1/dsem/R/zzz.R | 2 - dsem-1.2.1/dsem/README.md | 2 - dsem-1.2.1/dsem/inst/doc/dynamic_factor_analysis.Rmd | 2 - dsem-1.2.1/dsem/inst/doc/dynamic_factor_analysis.html | 9 +++----- dsem-1.2.1/dsem/vignettes/dynamic_factor_analysis.Rmd | 2 - 12 files changed, 25 insertions(+), 26 deletions(-)
Title: Single-Cell Decomposition using Hierarchical Autoencoder
Description: Provides a fast and accurate pipeline for single-cell analyses.
The 'scDHA' software package can perform clustering, dimension reduction and visualization, classification, and time-trajectory inference on single-cell data (Tran et.al. (2021) <DOI:10.1038/s41467-021-21312-2>).
Author: Ha Nguyen [cre],
Duc Tran [aut],
Tin Nguyen [fnd]
Maintainer: Ha Nguyen <hvn0006@auburn.edu>
Diff between scDHA versions 1.2.1 dated 2023-04-04 and 1.2.2 dated 2024-04-02
scDHA-1.2.1/scDHA/data/datalist |only scDHA-1.2.2/scDHA/DESCRIPTION | 26 -- scDHA-1.2.2/scDHA/MD5 | 13 - scDHA-1.2.2/scDHA/build/vignette.rds |binary scDHA-1.2.2/scDHA/inst/CITATION | 14 - scDHA-1.2.2/scDHA/inst/doc/Example.R | 14 - scDHA-1.2.2/scDHA/inst/doc/Example.html | 374 +++++++++++++------------------- scDHA-1.2.2/scDHA/src/RcppExports.cpp | 5 8 files changed, 188 insertions(+), 258 deletions(-)
Title: Effortlessly Create Stunning Canadian Maps
Description: Simple and seamless access to a variety of 'StatCan' shapefiles for mapping Canadian provinces, regions, forward sortation areas, census divisions, and subdivisions using the popular 'ggplot2' package.
Author: Joelle Cayen [aut, cre]
Maintainer: Joelle Cayen <joelle.cayen@phac-aspc.gc.ca>
Diff between canadianmaps versions 1.3.0 dated 2023-07-10 and 2.0.0 dated 2024-04-02
DESCRIPTION | 6 ++-- LICENSE | 4 +- MD5 | 23 +++++++++------- NAMESPACE | 33 ++++++++++++----------- NEWS.md | 7 ++++- R/canadianmaps.R | 34 +++++++++++++++++++++++- data/HR.rda |only man/CD.Rd | 52 ++++++++++++++++++------------------- man/CSD.Rd | 56 ++++++++++++++++++++-------------------- man/HR.Rd |only man/geom_cd.Rd | 46 ++++++++++++++++---------------- man/geom_csd.Rd | 46 ++++++++++++++++---------------- man/geom_hr.Rd |only tests/testthat/test-functions.R | 4 +- 14 files changed, 176 insertions(+), 135 deletions(-)
Title: Graphs and Tables for OMOP Results
Description: Provides methods to transform omop_result objects into
formatted tables and figures, facilitating the visualization of study
results working with the Observational Medical Outcomes Partnership
(OMOP) Common Data Model.
Author: Marti Catala [aut] ,
Nuria Mercade-Besora [aut, cre]
Maintainer: Nuria Mercade-Besora <nuria.mercadebesora@ndorms.ox.ac.uk>
Diff between visOmopResults versions 0.2.0 dated 2024-03-21 and 0.2.1 dated 2024-04-02
visOmopResults-0.2.0/visOmopResults/man/figures/gt_table.png |only visOmopResults-0.2.1/visOmopResults/DESCRIPTION | 6 visOmopResults-0.2.1/visOmopResults/MD5 | 91 visOmopResults-0.2.1/visOmopResults/NAMESPACE | 3 visOmopResults-0.2.1/visOmopResults/R/appendSettings.R |only visOmopResults-0.2.1/visOmopResults/R/assertions.R | 990 ++-- visOmopResults-0.2.1/visOmopResults/R/formatEstimateName.R | 351 - visOmopResults-0.2.1/visOmopResults/R/formatEstimateValue.R | 150 visOmopResults-0.2.1/visOmopResults/R/formatHeader.R | 2 visOmopResults-0.2.1/visOmopResults/R/formatTable.R | 650 +- visOmopResults-0.2.1/visOmopResults/R/fxTable.R | 748 +-- visOmopResults-0.2.1/visOmopResults/R/gtTable.R | 684 +- visOmopResults-0.2.1/visOmopResults/R/mockResults.R | 441 - visOmopResults-0.2.1/visOmopResults/R/pivotEstimates.R |only visOmopResults-0.2.1/visOmopResults/R/pivotSettings.R |only visOmopResults-0.2.1/visOmopResults/R/tidy.R | 66 visOmopResults-0.2.1/visOmopResults/R/unite.R | 11 visOmopResults-0.2.1/visOmopResults/R/utilities.R | 204 visOmopResults-0.2.1/visOmopResults/README.md | 67 visOmopResults-0.2.1/visOmopResults/build/vignette.rds |binary visOmopResults-0.2.1/visOmopResults/inst/doc/formatFunctions.R | 25 visOmopResults-0.2.1/visOmopResults/inst/doc/formatFunctions.Rmd | 94 visOmopResults-0.2.1/visOmopResults/inst/doc/formatFunctions.html | 2349 ++++++++-- visOmopResults-0.2.1/visOmopResults/inst/doc/splitAndUnite.Rmd | 260 - visOmopResults-0.2.1/visOmopResults/inst/doc/splitAndUnite.html | 20 visOmopResults-0.2.1/visOmopResults/inst/doc/tidy.R |only visOmopResults-0.2.1/visOmopResults/inst/doc/tidy.Rmd |only visOmopResults-0.2.1/visOmopResults/inst/doc/tidy.html |only visOmopResults-0.2.1/visOmopResults/man/appendSettings.Rd |only visOmopResults-0.2.1/visOmopResults/man/figures/formatTable.png |only visOmopResults-0.2.1/visOmopResults/man/figures/gtTable.png |only visOmopResults-0.2.1/visOmopResults/man/figures/logo.png |only visOmopResults-0.2.1/visOmopResults/man/formatHeader.Rd | 2 visOmopResults-0.2.1/visOmopResults/man/formatTable.Rd | 4 visOmopResults-0.2.1/visOmopResults/man/mockSummarisedResult.Rd | 5 visOmopResults-0.2.1/visOmopResults/man/optionsFormatTable.Rd | 44 visOmopResults-0.2.1/visOmopResults/man/pivotEstimates.Rd |only visOmopResults-0.2.1/visOmopResults/man/pivotSettings.Rd |only visOmopResults-0.2.1/visOmopResults/man/tidy.summarised_result.Rd | 2 visOmopResults-0.2.1/visOmopResults/man/uniteAdditional.Rd | 7 visOmopResults-0.2.1/visOmopResults/man/uniteGroup.Rd | 2 visOmopResults-0.2.1/visOmopResults/man/uniteStrata.Rd | 2 visOmopResults-0.2.1/visOmopResults/man/visOmopResults-package.Rd | 2 visOmopResults-0.2.1/visOmopResults/tests/testthat/test-appendSettings.R |only visOmopResults-0.2.1/visOmopResults/tests/testthat/test-formatEstimateName.R | 12 visOmopResults-0.2.1/visOmopResults/tests/testthat/test-formatEstimateValue.R | 60 visOmopResults-0.2.1/visOmopResults/tests/testthat/test-formatTable.R | 364 - visOmopResults-0.2.1/visOmopResults/tests/testthat/test-fxTable.R | 660 +- visOmopResults-0.2.1/visOmopResults/tests/testthat/test-pivotEstimates.R |only visOmopResults-0.2.1/visOmopResults/tests/testthat/test-pivotSettings.R |only visOmopResults-0.2.1/visOmopResults/tests/testthat/test-tidy.R | 60 visOmopResults-0.2.1/visOmopResults/tests/testthat/test-unite.R | 4 visOmopResults-0.2.1/visOmopResults/vignettes/formatFunctions.Rmd | 94 visOmopResults-0.2.1/visOmopResults/vignettes/splitAndUnite.Rmd | 260 - visOmopResults-0.2.1/visOmopResults/vignettes/tidy.Rmd |only 55 files changed, 5290 insertions(+), 3506 deletions(-)
More information about visOmopResults at CRAN
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Title: Phylogenetic Structural Equation Model
Description: Applies phylogenetic comparative methods (PCM) and phylogenetic trait imputation using
structural equation models (SEM), extending methods from Thorson et al. (2023) <doi:10.1111/2041-210X.14076>.
This implementation includes a minimal set of features, to
allow users to easily read all of the documentation and source code. PCM using SEM
includes phylogenetic linear models and structural equation models as nested submodels,
but also allows imputation of missing values. Features and comparison with other packages
are described in Thorson and van der Bijl (2023) <doi:10.1111/jeb.14234>.
Author: James Thorson [aut, cre] ,
Wouter van der Bijl [ctb]
Maintainer: James Thorson <James.Thorson@noaa.gov>
Diff between phylosem versions 1.1.3 dated 2024-02-01 and 1.1.4 dated 2024-04-02
phylosem-1.1.3/phylosem/R/utils.R |only phylosem-1.1.3/phylosem/man/checkDepPackageVersion.Rd |only phylosem-1.1.3/phylosem/man/reinstalling.Rd |only phylosem-1.1.4/phylosem/DESCRIPTION | 10 phylosem-1.1.4/phylosem/MD5 | 53 +- phylosem-1.1.4/phylosem/NAMESPACE | 2 phylosem-1.1.4/phylosem/NEWS.md | 4 phylosem-1.1.4/phylosem/R/zzz.R | 4 phylosem-1.1.4/phylosem/inst/doc/comparison.html | 384 +++++++-------- phylosem-1.1.4/phylosem/inst/doc/demonstration.html | 8 phylosem-1.1.4/phylosem/inst/doc/fisheries.html | 10 phylosem-1.1.4/phylosem/inst/doc/phylopath.html | 14 phylosem-1.1.4/phylosem/man/as_fitted_DAG.Rd | 34 - phylosem-1.1.4/phylosem/man/as_phylo4d.Rd | 46 - phylosem-1.1.4/phylosem/man/as_sem.Rd | 34 - phylosem-1.1.4/phylosem/man/average.Rd | 42 - phylosem-1.1.4/phylosem/man/average.compare_phylosem.Rd | 42 - phylosem-1.1.4/phylosem/man/best.Rd | 34 - phylosem-1.1.4/phylosem/man/best.compare_phylosem.Rd | 34 - phylosem-1.1.4/phylosem/man/choice.Rd | 38 - phylosem-1.1.4/phylosem/man/choice.compare_phylosem.Rd | 38 - phylosem-1.1.4/phylosem/man/coef.phylosem.Rd | 42 - phylosem-1.1.4/phylosem/man/compare_phylosem.Rd | 136 ++--- phylosem-1.1.4/phylosem/man/phylosem.Rd | 394 ++++++++-------- phylosem-1.1.4/phylosem/man/phylosem_control.Rd | 106 ++-- phylosem-1.1.4/phylosem/man/print.phylosem.Rd | 38 - phylosem-1.1.4/phylosem/man/summary.phylosem.Rd | 40 - phylosem-1.1.4/phylosem/man/vcov.phylosem.Rd | 36 - phylosem-1.1.4/phylosem/tests/testthat/test-platform.R | 3 29 files changed, 813 insertions(+), 813 deletions(-)
Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups preprocessed through
matching, weighting or subclassification, for example, using propensity scores. Includes
integration with 'MatchIt', 'WeightIt', 'MatchThem', 'twang', 'Matching', 'optmatch', 'CBPS', 'ebal',
'cem', 'sbw', and 'designmatch' for assessing balance on the output of their preprocessing
functions. Users can also specify data for balance assessment not generated through
the above packages. Also included are methods for assessing balance in clustered or
multiply imputed data sets or data sets with multi-category, continuous, or longitudinal treatments.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between cobalt versions 4.5.4 dated 2024-02-27 and 4.5.5 dated 2024-04-02
DESCRIPTION | 10 - MD5 | 71 ++++----- NEWS.md | 10 + R/bal.compute.R | 38 ++--- R/bal.plot.R | 85 ++++++----- R/bal.tab.time.list.R | 52 ++++--- R/bal.tab.weightit.R | 24 +-- R/balance-summary.R | 2 R/base.bal.tab.R | 3 R/functions_for_processing.R | 51 ++++-- R/x2base.R | 5 build/cobalt.pdf |binary build/stage23.rdb |binary inst/doc/cobalt.R | 3 inst/doc/cobalt.Rmd | 5 inst/doc/cobalt.html | 288 ++++++++++++++++++--------------------- inst/doc/longitudinal-treat.html | 14 - inst/doc/love.plot.html | 10 - inst/doc/optimizing-balance.R | 48 ++++-- inst/doc/optimizing-balance.Rmd | 62 +++++--- inst/doc/optimizing-balance.html | 254 ++++++++++++++++++---------------- inst/doc/other-packages.R | 2 inst/doc/other-packages.Rmd | 2 inst/doc/other-packages.html | 46 +++--- inst/doc/segmented-data.R | 3 inst/doc/segmented-data.Rmd | 3 inst/doc/segmented-data.html | 59 +++---- man/bal.plot.Rd | 4 man/bal.tab.time.list.Rd | 52 ++++--- man/bal.tab.weightit.Rd | 24 +-- man/balance-summary.Rd | 2 tests/testthat/Rplots.pdf |only vignettes/cobalt.Rmd | 5 vignettes/optimizing-balance.Rmd | 62 +++++--- vignettes/other-packages.Rmd | 2 vignettes/references.bib | 17 ++ vignettes/segmented-data.Rmd | 3 37 files changed, 727 insertions(+), 594 deletions(-)
Title: Utilities for Producing Maps
Description: Provides a minimal, light-weight set of tools for producing nice looking maps in R, with support for map projections. See Brown (2016) <doi:10.32614/RJ-2016-005>.
Author: Patrick Brown [aut, cre, cph]
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between mapmisc versions 2.0.6 dated 2024-02-06 and 2.0.7 dated 2024-04-02
mapmisc-2.0.6/mapmisc/inst/extdoc/mapLayers.md |only mapmisc-2.0.7/mapmisc/DESCRIPTION | 8 - mapmisc-2.0.7/mapmisc/MD5 | 33 ++--- mapmisc-2.0.7/mapmisc/R/colourScale.R | 140 ++++++++++++------------ mapmisc-2.0.7/mapmisc/R/getTiles.R | 75 +++++++----- mapmisc-2.0.7/mapmisc/R/insetMap.R | 26 +++- mapmisc-2.0.7/mapmisc/R/openmap.R | 42 +++---- mapmisc-2.0.7/mapmisc/R/tonerToTrans.R | 29 +++- mapmisc-2.0.7/mapmisc/R/utils.R | 53 +++++++++ mapmisc-2.0.7/mapmisc/inst/doc/north.R | 2 mapmisc-2.0.7/mapmisc/inst/doc/north.Rmd | 3 mapmisc-2.0.7/mapmisc/inst/doc/north.html | 86 +++++++++----- mapmisc-2.0.7/mapmisc/inst/doc/perspective.html | 25 ++-- mapmisc-2.0.7/mapmisc/man/modis.Rd | 10 + mapmisc-2.0.7/mapmisc/man/openmap.Rd | 6 - mapmisc-2.0.7/mapmisc/man/tonerToTrans.Rd | 22 ++- mapmisc-2.0.7/mapmisc/tests/openmap.R | 34 +++++ mapmisc-2.0.7/mapmisc/vignettes/north.Rmd | 3 18 files changed, 379 insertions(+), 218 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') Driver Manager
Description: Provides a developer-facing interface to 'Arrow' Database
Connectivity ('ADBC') for the purposes of driver development, driver
testing, and building high-level database interfaces for users. 'ADBC'
<https://arrow.apache.org/adbc/> is an API standard for database access
libraries that uses 'Arrow' for result sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcdrivermanager versions 0.10.0 dated 2024-02-22 and 0.11.0 dated 2024-04-02
adbcdrivermanager-0.10.0/adbcdrivermanager/NEWS.md |only adbcdrivermanager-0.11.0/adbcdrivermanager/DESCRIPTION | 6 adbcdrivermanager-0.11.0/adbcdrivermanager/MD5 | 17 - adbcdrivermanager-0.11.0/adbcdrivermanager/R/error.R | 6 adbcdrivermanager-0.11.0/adbcdrivermanager/README.md | 3 adbcdrivermanager-0.11.0/adbcdrivermanager/configure | 2 adbcdrivermanager-0.11.0/adbcdrivermanager/src/adbc_driver_manager.cc | 126 +++++++--- adbcdrivermanager-0.11.0/adbcdrivermanager/src/driver_base.h | 14 - adbcdrivermanager-0.11.0/adbcdrivermanager/src/driver_test.cc | 39 +-- adbcdrivermanager-0.11.0/adbcdrivermanager/tests/testthat/test-error.R | 4 10 files changed, 148 insertions(+), 69 deletions(-)
More information about adbcdrivermanager at CRAN
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Title: Partially Replicated (p-Rep) Designs
Description: Early generation breeding trials are to be conducted in multiple
environments where it may not be possible to replicate all the
lines in each environment due to scarcity of resources. For such
situations, partially replicated (p-Rep) designs have wide
application potential as only a proportion of the test lines are
replicated at each environment. A collection of several utility
functions related to p-Rep designs have been developed. Here, the
package contains six functions for a complete stepwise analytical
study of these designs. Five functions pRep1(), pRep2(), pRep3(),
pRep4() and pRep5(), are used to generate five new series of p-Rep
designs and also compute average variance factors and canonical
efficiency factors of generated designs. A fourth function NCEV()
is used to generate incidence matrix (N), information matrix (C),
canonical efficiency factor (E) and average variance factor (V).
This function is general in nature and can be used for studying the
characterization properti [...truncated...]
Author: Vinaykumar L.N. [aut, cre],
Cini Varghese [aut, ctb],
Mohd Harun [aut, ctb],
Ashutosh Dalal [aut, ctb],
Sayantani Karmakar [aut, ctb],
Vinayaka [aut, ctb]
Maintainer: Vinaykumar L.N. <vinaymandya123@gmail.com>
Diff between pRepDesigns versions 1.1.0 dated 2023-05-14 and 1.2.0 dated 2024-04-02
DESCRIPTION | 8 +++---- MD5 | 10 ++++---- R/pRep4.R | 56 +++++++++++++++++++++++++------------------------- R/pRep5.R | 55 ++++++++++++++++++++++++++----------------------- man/pRep4.Rd | 66 ++++++++++++++++++++++++++++++----------------------------- man/pRep5.Rd | 60 +++++++++++++++++++++++++++-------------------------- 6 files changed, 132 insertions(+), 123 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcpostgresql versions 0.10.0 dated 2024-02-22 and 0.11.0 dated 2024-04-02
adbcpostgresql-0.10.0/adbcpostgresql/NEWS.md |only adbcpostgresql-0.10.0/adbcpostgresql/src/common |only adbcpostgresql-0.10.0/adbcpostgresql/src/connection.cc |only adbcpostgresql-0.10.0/adbcpostgresql/src/connection.h |only adbcpostgresql-0.10.0/adbcpostgresql/src/copy |only adbcpostgresql-0.10.0/adbcpostgresql/src/database.cc |only adbcpostgresql-0.10.0/adbcpostgresql/src/database.h |only adbcpostgresql-0.10.0/adbcpostgresql/src/error.cc |only adbcpostgresql-0.10.0/adbcpostgresql/src/error.h |only adbcpostgresql-0.10.0/adbcpostgresql/src/init.c |only adbcpostgresql-0.10.0/adbcpostgresql/src/nanoarrow |only adbcpostgresql-0.10.0/adbcpostgresql/src/postgres_type.h |only adbcpostgresql-0.10.0/adbcpostgresql/src/postgres_util.h |only adbcpostgresql-0.10.0/adbcpostgresql/src/postgresql.cc |only adbcpostgresql-0.10.0/adbcpostgresql/src/result_helper.cc |only adbcpostgresql-0.10.0/adbcpostgresql/src/result_helper.h |only adbcpostgresql-0.10.0/adbcpostgresql/src/statement.cc |only adbcpostgresql-0.10.0/adbcpostgresql/src/statement.h |only adbcpostgresql-0.11.0/adbcpostgresql/DESCRIPTION | 6 - adbcpostgresql-0.11.0/adbcpostgresql/MD5 | 73 ++++++++------ adbcpostgresql-0.11.0/adbcpostgresql/cleanup | 3 adbcpostgresql-0.11.0/adbcpostgresql/src/Makevars.in | 20 ++- adbcpostgresql-0.11.0/adbcpostgresql/src/Makevars.ucrt | 19 +-- adbcpostgresql-0.11.0/adbcpostgresql/src/Makevars.win | 20 ++- adbcpostgresql-0.11.0/adbcpostgresql/src/c |only adbcpostgresql-0.11.0/adbcpostgresql/src/init.cc |only 26 files changed, 81 insertions(+), 60 deletions(-)
More information about adbcpostgresql at CRAN
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Title: Joint Analysis and Imputation of Incomplete Data
Description: Joint analysis and imputation of incomplete data in the Bayesian
framework, using (generalized) linear (mixed) models and extensions there of,
survival models, or joint models for longitudinal and survival data, as
described in Erler, Rizopoulos and Lesaffre (2021) <doi:10.18637/jss.v100.i20>.
Incomplete covariates, if present, are automatically imputed.
The package performs some preprocessing of the data and creates a 'JAGS'
model, which will then automatically be passed to 'JAGS'
<https://mcmc-jags.sourceforge.io/> with the help of
the package 'rjags'.
Author: Nicole S. Erler [aut, cre]
Maintainer: Nicole S. Erler <n.erler@erasmusmc.nl>
Diff between JointAI versions 1.0.5 dated 2023-04-27 and 1.0.6 dated 2024-04-02
JointAI-1.0.5/JointAI/tests/testthat/_snaps/glmm.md |only JointAI-1.0.6/JointAI/DESCRIPTION | 6 JointAI-1.0.6/JointAI/MD5 | 58 JointAI-1.0.6/JointAI/NEWS.md | 1052 +++---- JointAI-1.0.6/JointAI/R/JAGSmodel_glmm.R | 3 JointAI-1.0.6/JointAI/R/JAGSmodel_surv.R | 12 JointAI-1.0.6/JointAI/R/JointAIObject.R | 222 - JointAI-1.0.6/JointAI/R/build_model.R | 146 JointAI-1.0.6/JointAI/R/get_model_info.R | 12 JointAI-1.0.6/JointAI/R/get_modeltypes.R | 2 JointAI-1.0.6/JointAI/R/helpfunctions.R | 1484 +++++----- JointAI-1.0.6/JointAI/R/helpfunctions_JAGSmodel.R | 27 JointAI-1.0.6/JointAI/R/helpfunctions_formulas.R | 677 ++-- JointAI-1.0.6/JointAI/R/helpfunctions_melt.R | 455 ++- JointAI-1.0.6/JointAI/R/model_imp.R | 2 JointAI-1.0.6/JointAI/R/plot_imp_distr.R | 4 JointAI-1.0.6/JointAI/R/predict.R | 10 JointAI-1.0.6/JointAI/build/JointAI.pdf |binary JointAI-1.0.6/JointAI/build/stage23.rdb |binary JointAI-1.0.6/JointAI/build/vignette.rds |binary JointAI-1.0.6/JointAI/inst/doc/AfterFitting.html | 634 ++-- JointAI-1.0.6/JointAI/inst/doc/MCMCsettings.R | 32 JointAI-1.0.6/JointAI/inst/doc/MCMCsettings.html | 356 +- JointAI-1.0.6/JointAI/inst/doc/ModelSpecification.html | 882 ++--- JointAI-1.0.6/JointAI/inst/doc/SelectingParameters.html | 828 ++--- JointAI-1.0.6/JointAI/man/JointAIObject.Rd | 2 JointAI-1.0.6/JointAI/man/model_imp.Rd | 2 JointAI-1.0.6/JointAI/man/paste_coef.Rd | 2 JointAI-1.0.6/JointAI/man/paste_linpred.Rd | 10 JointAI-1.0.6/JointAI/tests/testthat/test-glmm.R | 888 ++--- JointAI-1.0.6/JointAI/tests/testthat/test-helpfunctions_melt.R |only 31 files changed, 4033 insertions(+), 3775 deletions(-)
Title: Connect to an OMOP Common Data Model
Description: Provides tools for working with observational health data in the
Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax.
Common data model database table references are stored in a single compound object along with metadata.
Author: Adam Black [aut, cre] ,
Artem Gorbachev [aut],
Edward Burn [aut],
Marti Catala Sabate [aut]
Maintainer: Adam Black <black@ohdsi.org>
Diff between CDMConnector versions 1.3.0 dated 2024-02-05 and 1.3.1 dated 2024-04-02
CDMConnector-1.3.0/CDMConnector/tests/testthat/test-dbSource.R |only CDMConnector-1.3.1/CDMConnector/DESCRIPTION | 8 CDMConnector-1.3.1/CDMConnector/MD5 | 75 +- CDMConnector-1.3.1/CDMConnector/R/cdm.R | 22 CDMConnector-1.3.1/CDMConnector/R/cdmSubset.R | 35 - CDMConnector-1.3.1/CDMConnector/R/cohortTransformations.R | 67 +- CDMConnector-1.3.1/CDMConnector/R/dbSource.R | 16 CDMConnector-1.3.1/CDMConnector/R/generateCohortSet.R | 31 - CDMConnector-1.3.1/CDMConnector/R/generateConceptCohortSet.R | 35 + CDMConnector-1.3.1/CDMConnector/inst/cohorts4 |only CDMConnector-1.3.1/CDMConnector/inst/doc/a01_getting-started.R | 1 CDMConnector-1.3.1/CDMConnector/inst/doc/a01_getting-started.Rmd | 1 CDMConnector-1.3.1/CDMConnector/inst/doc/a01_getting-started.html | 104 +-- CDMConnector-1.3.1/CDMConnector/inst/doc/a02_cohorts.R | 2 CDMConnector-1.3.1/CDMConnector/inst/doc/a02_cohorts.Rmd | 2 CDMConnector-1.3.1/CDMConnector/inst/doc/a02_cohorts.html | 144 ++--- CDMConnector-1.3.1/CDMConnector/inst/doc/a03_dbplyr.R | 2 CDMConnector-1.3.1/CDMConnector/inst/doc/a03_dbplyr.Rmd | 2 CDMConnector-1.3.1/CDMConnector/inst/doc/a06_using_cdm_attributes.R | 56 -- CDMConnector-1.3.1/CDMConnector/inst/doc/a06_using_cdm_attributes.Rmd | 51 - CDMConnector-1.3.1/CDMConnector/inst/doc/a06_using_cdm_attributes.html | 261 +++++----- CDMConnector-1.3.1/CDMConnector/man/cdmSample.Rd | 12 CDMConnector-1.3.1/CDMConnector/man/cdm_from_con.Rd | 9 CDMConnector-1.3.1/CDMConnector/tests/testthat/revdeps.R |only CDMConnector-1.3.1/CDMConnector/tests/testthat/setup.R | 22 CDMConnector-1.3.1/CDMConnector/tests/testthat/test-cdm_tranformations.R | 2 CDMConnector-1.3.1/CDMConnector/tests/testthat/test-db-cdm.R | 38 + CDMConnector-1.3.1/CDMConnector/tests/testthat/test-db-cohortTransformations.R | 126 ++++ CDMConnector-1.3.1/CDMConnector/tests/testthat/test-db-dbSource.R |only CDMConnector-1.3.1/CDMConnector/tests/testthat/test-db-generateConceptCohortSet.R | 61 ++ CDMConnector-1.3.1/CDMConnector/tests/testthat/test-db-generic-bind.R |only CDMConnector-1.3.1/CDMConnector/tests/testthat/test-db-recordCohortAttrition.R | 2 CDMConnector-1.3.1/CDMConnector/tests/testthat/test-db-sample.R |only CDMConnector-1.3.1/CDMConnector/tests/testthat/test-deprecations.R | 1 CDMConnector-1.3.1/CDMConnector/tests/testthat/test-memory-issue.R | 1 CDMConnector-1.3.1/CDMConnector/tests/testthat/test-readCohortSet.R | 9 CDMConnector-1.3.1/CDMConnector/tests/testthat/test-writePrefixDropUseCase.R |only CDMConnector-1.3.1/CDMConnector/tests/testthat/test-write_prefix_cohort_generation_snowflake.R | 2 CDMConnector-1.3.1/CDMConnector/vignettes/a01_getting-started.Rmd | 1 CDMConnector-1.3.1/CDMConnector/vignettes/a02_cohorts.Rmd | 2 CDMConnector-1.3.1/CDMConnector/vignettes/a03_dbplyr.Rmd | 2 CDMConnector-1.3.1/CDMConnector/vignettes/a06_using_cdm_attributes.Rmd | 51 - 42 files changed, 770 insertions(+), 486 deletions(-)
Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between inputs and
outputs and extensive prebuilt widgets make it possible to build
beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre] ,
Joe Cheng [aut],
JJ Allaire [aut],
Carson Sievert [aut] ,
Barret Schloerke [aut] ,
Yihui Xie [aut],
Jeff Allen [aut],
Jonathan McPherson [aut],
Alan Dipert [aut],
Barbara Borges [aut],
Posit Software, PBC [cph, fnd],
jQuery [...truncated...]
Maintainer: Winston Chang <winston@posit.co>
Diff between shiny versions 1.8.1 dated 2024-03-26 and 1.8.1.1 dated 2024-04-02
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NEWS.md | 4 ++++ R/extended-task.R | 2 +- inst/www/shared/shiny-autoreload.js | 2 +- inst/www/shared/shiny-showcase.css | 2 +- inst/www/shared/shiny-showcase.js | 2 +- inst/www/shared/shiny-testmode.js | 2 +- inst/www/shared/shiny.js | 22 +++++++++++----------- inst/www/shared/shiny.js.map | 4 ++-- inst/www/shared/shiny.min.css | 2 +- inst/www/shared/shiny.min.js | 4 ++-- inst/www/shared/shiny.min.js.map | 4 ++-- man/ExtendedTask.Rd | 18 ------------------ 14 files changed, 43 insertions(+), 57 deletions(-)
Title: Summarise Patient-Level Drug Utilisation in Data Mapped to the
OMOP Common Data Model
Description: Summarise patient-level drug utilisation cohorts using data mapped
to the Observational Medical Outcomes Partnership (OMOP) common data model.
New users and prevalent users cohorts can be generated and their
characteristics, indication and drug use summarised.
Author: Marti Catala [aut, cre] ,
Mike Du [aut] ,
Yuchen Guo [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [ctb] ,
Xintong Li [ctb] ,
Marta Alcalde-Herraiz [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between DrugUtilisation versions 0.5.2 dated 2024-03-05 and 0.5.3 dated 2024-04-02
DrugUtilisation-0.5.2/DrugUtilisation/build |only DrugUtilisation-0.5.2/DrugUtilisation/inst/doc |only DrugUtilisation-0.5.2/DrugUtilisation/vignettes |only DrugUtilisation-0.5.3/DrugUtilisation/DESCRIPTION | 9 DrugUtilisation-0.5.3/DrugUtilisation/MD5 | 55 DrugUtilisation-0.5.3/DrugUtilisation/R/checkInputs.R | 1428 +++++----- DrugUtilisation-0.5.3/DrugUtilisation/R/generateAtcCohortSet.R | 4 DrugUtilisation-0.5.3/DrugUtilisation/R/generateIngredientCohortSet.R | 248 - DrugUtilisation-0.5.3/DrugUtilisation/R/summariseLargeScaleCharacteristics.R | 178 - DrugUtilisation-0.5.3/DrugUtilisation/man/figures/DrugUtilisation.png |binary DrugUtilisation-0.5.3/DrugUtilisation/man/generateAtcCohortSet.Rd | 4 DrugUtilisation-0.5.3/DrugUtilisation/man/generateIngredientCohortSet.Rd | 16 DrugUtilisation-0.5.3/DrugUtilisation/tests/testthat/test-generateConceptCohortSet.R | 27 DrugUtilisation-0.5.3/DrugUtilisation/tests/testthat/test-generatedIngredientCohortSet.R | 34 DrugUtilisation-0.5.3/DrugUtilisation/tests/testthat/test-indication.R | 1300 ++++----- 15 files changed, 1664 insertions(+), 1639 deletions(-)
More information about DrugUtilisation at CRAN
Permanent link
Title: Estimate Survival from Common Data Model Cohorts
Description: Estimate survival using data mapped to the Observational Medical Outcomes Partnership common data model. Survival can be estimated based on user-defined study cohorts.
Author: Edward Burn [aut, cre] ,
Kim Lopez [aut] ,
Marti Catala [ctb] ,
Xintong Li [ctb] ,
Danielle Newby [ctb]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between CohortSurvival versions 0.3.0 dated 2024-02-08 and 0.4.0 dated 2024-04-02
CohortSurvival-0.3.0/CohortSurvival/R/survivalSummary.R |only CohortSurvival-0.3.0/CohortSurvival/man/plotCumulativeIncidence.Rd |only CohortSurvival-0.3.0/CohortSurvival/man/survivalSummary.Rd |only CohortSurvival-0.3.0/CohortSurvival/tests/testthat/test-survivalSummary.R |only CohortSurvival-0.4.0/CohortSurvival/DESCRIPTION | 15 CohortSurvival-0.4.0/CohortSurvival/MD5 | 71 CohortSurvival-0.4.0/CohortSurvival/NAMESPACE | 4 CohortSurvival-0.4.0/CohortSurvival/R/addCohortSurvival.R | 521 - CohortSurvival-0.4.0/CohortSurvival/R/asSurvivalResult.R |only CohortSurvival-0.4.0/CohortSurvival/R/benchmarkCohortSurvival.R | 1082 +- CohortSurvival-0.4.0/CohortSurvival/R/estimateSurvival.R | 2956 +++---- CohortSurvival-0.4.0/CohortSurvival/R/generateDeathCohort.R | 338 CohortSurvival-0.4.0/CohortSurvival/R/mockMGUS2cdm.R | 12 CohortSurvival-0.4.0/CohortSurvival/R/plotSurvival.R | 516 - CohortSurvival-0.4.0/CohortSurvival/R/tableSurvival.R |only CohortSurvival-0.4.0/CohortSurvival/R/utils.R | 38 CohortSurvival-0.4.0/CohortSurvival/README.md | 48 CohortSurvival-0.4.0/CohortSurvival/inst/doc/a01_Single_event_of_interest.R | 24 CohortSurvival-0.4.0/CohortSurvival/inst/doc/a01_Single_event_of_interest.Rmd | 230 CohortSurvival-0.4.0/CohortSurvival/inst/doc/a01_Single_event_of_interest.html | 184 CohortSurvival-0.4.0/CohortSurvival/inst/doc/a02_Competing_risk_survival.R | 25 CohortSurvival-0.4.0/CohortSurvival/inst/doc/a02_Competing_risk_survival.Rmd | 259 CohortSurvival-0.4.0/CohortSurvival/inst/doc/a02_Competing_risk_survival.html | 128 CohortSurvival-0.4.0/CohortSurvival/man/addCohortSurvival.Rd | 3 CohortSurvival-0.4.0/CohortSurvival/man/asSurvivalResult.Rd |only CohortSurvival-0.4.0/CohortSurvival/man/estimateCompetingRiskSurvival.Rd | 14 CohortSurvival-0.4.0/CohortSurvival/man/estimateSingleEventSurvival.Rd | 7 CohortSurvival-0.4.0/CohortSurvival/man/figures/README-unnamed-chunk-12-1.png |binary CohortSurvival-0.4.0/CohortSurvival/man/figures/README-unnamed-chunk-9-1.png |binary CohortSurvival-0.4.0/CohortSurvival/man/generateDeathCohortSet.Rd | 4 CohortSurvival-0.4.0/CohortSurvival/man/plotSurvival.Rd | 11 CohortSurvival-0.4.0/CohortSurvival/man/splitNameLevel.Rd | 2 CohortSurvival-0.4.0/CohortSurvival/man/tableSurvival.Rd |only CohortSurvival-0.4.0/CohortSurvival/man/uniteNameLevel.Rd | 2 CohortSurvival-0.4.0/CohortSurvival/tests/testthat/test-addCohortSurvival.R | 60 CohortSurvival-0.4.0/CohortSurvival/tests/testthat/test-estimateSurvival.R | 4078 +++++----- CohortSurvival-0.4.0/CohortSurvival/tests/testthat/test-generateDeathCohort.R | 1033 +- CohortSurvival-0.4.0/CohortSurvival/tests/testthat/test-plotSurvival.R | 325 CohortSurvival-0.4.0/CohortSurvival/tests/testthat/test-tableSurvival.R |only CohortSurvival-0.4.0/CohortSurvival/vignettes/a01_Single_event_of_interest.Rmd | 230 CohortSurvival-0.4.0/CohortSurvival/vignettes/a02_Competing_risk_survival.Rmd | 259 41 files changed, 6402 insertions(+), 6077 deletions(-)
More information about CohortSurvival at CRAN
Permanent link
Title: Extensions for 'Flextable'
Description: Build display tables easily by extending the functionality of the
'flextable' package. Features include spanning header, grouping rows,
parsing markdown and so on.
Author: Atsushi Yasumoto [aut, cph, cre]
,
David Gohel [ctb],
Romain Francois [ctb] ,
Tatsuya Shima [ctb]
Maintainer: Atsushi Yasumoto <atusy.rpkg@gmail.com>
Diff between ftExtra versions 0.6.2 dated 2024-02-27 and 0.6.3 dated 2024-04-02
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NEWS.md | 6 +++++- R/colformat.R | 4 ++-- R/footnote.R | 3 ++- README.md | 6 +++--- build/vignette.rds |binary inst/doc/format_columns.html | 38 +++++++++++++++++++------------------- inst/doc/group-rows.html | 14 +++++++------- inst/doc/transform-headers.html | 8 ++++---- man/footnote_options.Rd | 3 ++- 11 files changed, 59 insertions(+), 53 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-10 1.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-17 1.3
More information about UpAndDownPlots at CRAN
Permanent link
Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10918-6, Nankodo, ISBN: 978-4-524-26158-1, Ohmsha, ISBN: 978-4-274-22632-8), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below. This report has been cited in more than 10,000 scientific articles.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>
Diff between RcmdrPlugin.EZR versions 1.64 dated 2024-01-24 and 1.65 dated 2024-04-02
DESCRIPTION | 17 MD5 | 22 - NEWS | 4 R/EZR.R | 482 ++++++++++++++++++++++++++-- inst/CHANGES | 4 inst/doc/EZR.htm | 11 inst/doc/EZR.pdf |binary inst/etc/menus.txt | 2 inst/po/ja/LC_MESSAGES/R-RcmdrPlugin.EZR.mo |binary man/EZR.Rd | 6 man/EZR.dialogs.Rd | 2 po/R-RcmdrPlugin.EZR.po | 73 ++++ 12 files changed, 562 insertions(+), 61 deletions(-)
More information about RcmdrPlugin.EZR at CRAN
Permanent link
Title: The Lorentz Transform in Relativistic Physics
Description: The Lorentz transform in special relativity; also the
gyrogroup structure of three-velocities. Performs active and
passive transforms and has the ability to use units in which the
speed of light is not unity. Includes some experimental
functionality for celerity and rapidity. For general relativity,
see the 'schwarzschild' package.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between lorentz versions 1.0-5 dated 2020-09-24 and 1.1-1 dated 2024-04-02
lorentz-1.0-5/lorentz/inst/JOC |only lorentz-1.0-5/lorentz/man/3vel.Rd |only lorentz-1.0-5/lorentz/man/4mom.Rd |only lorentz-1.0-5/lorentz/man/4vel.Rd |only lorentz-1.0-5/lorentz/vignettes/f-002.pdf |only lorentz-1.1-1/lorentz/DESCRIPTION | 25 lorentz-1.1-1/lorentz/MD5 | 78 - lorentz-1.1-1/lorentz/NAMESPACE | 13 lorentz-1.1-1/lorentz/R/celerity.R |only lorentz-1.1-1/lorentz/R/gyrogroup.R | 915 +++++++++++++++++- lorentz-1.1-1/lorentz/R/lorentz-package.R |only lorentz-1.1-1/lorentz/R/nullvector.R | 65 + lorentz-1.1-1/lorentz/README.md | 53 - lorentz-1.1-1/lorentz/build/partial.rdb |binary lorentz-1.1-1/lorentz/build/vignette.rds |binary lorentz-1.1-1/lorentz/inst/JOSE |only lorentz-1.1-1/lorentz/inst/doc/lorentz.R | 178 +-- lorentz-1.1-1/lorentz/inst/doc/lorentz.Rnw | 89 + lorentz-1.1-1/lorentz/inst/doc/lorentz.pdf |binary lorentz-1.1-1/lorentz/inst/headlight_effect.Rmd |only lorentz-1.1-1/lorentz/inst/lorentz_nonassociative.svg |only lorentz-1.1-1/lorentz/inst/lorentz_noncommutative.svg | 542 +++++----- lorentz-1.1-1/lorentz/inst/lorentz_stickermaker.R |only lorentz-1.1-1/lorentz/inst/mobius.Rmd | 28 lorentz-1.1-1/lorentz/inst/read.me |only lorentz-1.1-1/lorentz/man/Ops.3vec.Rd | 2 lorentz-1.1-1/lorentz/man/boost.Rd | 14 lorentz-1.1-1/lorentz/man/c.Rd | 2 lorentz-1.1-1/lorentz/man/celerity.Rd |only lorentz-1.1-1/lorentz/man/comm_fail.Rd | 2 lorentz-1.1-1/lorentz/man/cosines.Rd | 1 lorentz-1.1-1/lorentz/man/figures |only lorentz-1.1-1/lorentz/man/fourmom.Rd |only lorentz-1.1-1/lorentz/man/fourvel.Rd |only lorentz-1.1-1/lorentz/man/gam.Rd | 11 lorentz-1.1-1/lorentz/man/gyr.Rd | 8 lorentz-1.1-1/lorentz/man/photon.Rd | 8 lorentz-1.1-1/lorentz/man/print.Rd | 2 lorentz-1.1-1/lorentz/man/r3vel.Rd | 6 lorentz-1.1-1/lorentz/man/reflect.Rd | 10 lorentz-1.1-1/lorentz/man/set.Rd | 2 lorentz-1.1-1/lorentz/man/sol.Rd | 56 - lorentz-1.1-1/lorentz/man/threevel.Rd |only lorentz-1.1-1/lorentz/vignettes/lorentz.Rnw | 89 + lorentz-1.1-1/lorentz/vignettes/lorentz.bib | 8 45 files changed, 1704 insertions(+), 503 deletions(-)
Title: Plant Photobiology Related Functions and Data
Description: Provides functions for quantifying visible (VIS) and ultraviolet
(UV) radiation in relation to the photoreceptors Phytochromes,
Cryptochromes, and UVR8 which are present in plants. It also includes data
sets on the optical properties of plants. Part of the 'r4photobiology'
suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyPlants versions 0.4.3 dated 2023-05-12 and 0.5.0 dated 2024-04-02
photobiologyPlants-0.4.3/photobiologyPlants/R/Pfr-P-ratio-mono.r |only photobiologyPlants-0.4.3/photobiologyPlants/R/Pfr-P-ratio.r |only photobiologyPlants-0.4.3/photobiologyPlants/R/Pfr-Ptot.r |only photobiologyPlants-0.4.3/photobiologyPlants/R/PfrPtot-RFR.r |only photobiologyPlants-0.4.3/photobiologyPlants/R/Phy-Sigma-FR.r |only photobiologyPlants-0.4.3/photobiologyPlants/R/Phy-Sigma-R.r |only photobiologyPlants-0.4.3/photobiologyPlants/R/Phy-Sigma.r |only photobiologyPlants-0.4.3/photobiologyPlants/R/phy-reaction-rates.r |only photobiologyPlants-0.5.0/photobiologyPlants/DESCRIPTION | 18 photobiologyPlants-0.5.0/photobiologyPlants/MD5 | 146 ++--- photobiologyPlants-0.5.0/photobiologyPlants/NAMESPACE | 1 photobiologyPlants-0.5.0/photobiologyPlants/NEWS.md | 6 photobiologyPlants-0.5.0/photobiologyPlants/R/McCree-photosynthesis-mspct.R | 12 photobiologyPlants-0.5.0/photobiologyPlants/R/Pfr-P-ratio-mono.R |only photobiologyPlants-0.5.0/photobiologyPlants/R/Pfr-P-ratio.R |only photobiologyPlants-0.5.0/photobiologyPlants/R/Pfr-Ptot.R |only photobiologyPlants-0.5.0/photobiologyPlants/R/PfrPtot-RFR.R |only photobiologyPlants-0.5.0/photobiologyPlants/R/Phy-Sigma-FR.R |only photobiologyPlants-0.5.0/photobiologyPlants/R/Phy-Sigma-R.R |only photobiologyPlants-0.5.0/photobiologyPlants/R/Phy-Sigma.R |only photobiologyPlants-0.5.0/photobiologyPlants/R/carotenoids-mspct.r | 2 photobiologyPlants-0.5.0/photobiologyPlants/R/chlorophylls-fluo-mspct.r | 8 photobiologyPlants-0.5.0/photobiologyPlants/R/chlorophylls-mspct.r | 22 photobiologyPlants-0.5.0/photobiologyPlants/R/crys-mspct.r | 18 photobiologyPlants-0.5.0/photobiologyPlants/R/phots-mspct.r | 11 photobiologyPlants-0.5.0/photobiologyPlants/R/phy-reaction-rates.R |only photobiologyPlants-0.5.0/photobiologyPlants/R/phytochrome-data.r | 2 photobiologyPlants-0.5.0/photobiologyPlants/R/plant-optics-data.r | 22 photobiologyPlants-0.5.0/photobiologyPlants/R/plant-qq-ratios.r | 206 ++++--- photobiologyPlants-0.5.0/photobiologyPlants/R/uvr8-mspct.r | 2 photobiologyPlants-0.5.0/photobiologyPlants/R/ztls-mspct.r | 2 photobiologyPlants-0.5.0/photobiologyPlants/README.md | 79 ++- photobiologyPlants-0.5.0/photobiologyPlants/build/partial.rdb |binary photobiologyPlants-0.5.0/photobiologyPlants/build/vignette.rds |binary photobiologyPlants-0.5.0/photobiologyPlants/data/CRYs.mspct.rda |binary photobiologyPlants-0.5.0/photobiologyPlants/data/McCree.rda |binary photobiologyPlants-0.5.0/photobiologyPlants/data/PHOTs.mspct.rda |binary photobiologyPlants-0.5.0/photobiologyPlants/data/UVR8s.mspct.rda |binary photobiologyPlants-0.5.0/photobiologyPlants/data/ZTLs.mspct.rda |binary photobiologyPlants-0.5.0/photobiologyPlants/data/carotenoids-mspct.rda |binary photobiologyPlants-0.5.0/photobiologyPlants/data/chlorophylls-fluorescence-mspct.rda |binary photobiologyPlants-0.5.0/photobiologyPlants/data/chlorophylls-mspct.rda |binary 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photobiologyPlants-0.5.0/photobiologyPlants/man/PHYs.mspct.Rd | 2 photobiologyPlants-0.5.0/photobiologyPlants/man/Pfr_P_ratio.Rd | 2 photobiologyPlants-0.5.0/photobiologyPlants/man/Pfr_P_ratio_mono.Rd | 2 photobiologyPlants-0.5.0/photobiologyPlants/man/Pfr_Ptot.Rd | 2 photobiologyPlants-0.5.0/photobiologyPlants/man/Pfr_Ptot_R_FR.Rd | 6 photobiologyPlants-0.5.0/photobiologyPlants/man/Phy_Sigma.Rd | 4 photobiologyPlants-0.5.0/photobiologyPlants/man/Phy_Sigma_FR.Rd | 6 photobiologyPlants-0.5.0/photobiologyPlants/man/Phy_Sigma_R.Rd | 4 photobiologyPlants-0.5.0/photobiologyPlants/man/Phy_reaction_rates.Rd | 10 photobiologyPlants-0.5.0/photobiologyPlants/man/R_FR.Rd | 15 photobiologyPlants-0.5.0/photobiologyPlants/man/Solidago_altissima.mspct.Rd | 14 photobiologyPlants-0.5.0/photobiologyPlants/man/UVA1_UV.Rd | 75 +- photobiologyPlants-0.5.0/photobiologyPlants/man/UVA2_UV.Rd | 75 +- photobiologyPlants-0.5.0/photobiologyPlants/man/UVA_PAR.Rd | 15 photobiologyPlants-0.5.0/photobiologyPlants/man/UVA_UV.Rd | 15 photobiologyPlants-0.5.0/photobiologyPlants/man/UVAlw_UV.Rd | 19 photobiologyPlants-0.5.0/photobiologyPlants/man/UVAsw_UV.Rd | 19 photobiologyPlants-0.5.0/photobiologyPlants/man/UVB_PAR.Rd | 15 photobiologyPlants-0.5.0/photobiologyPlants/man/UVB_UV.Rd | 15 photobiologyPlants-0.5.0/photobiologyPlants/man/UVB_UVA.Rd |only photobiologyPlants-0.5.0/photobiologyPlants/man/UVR8s.mspct.Rd | 88 +-- photobiologyPlants-0.5.0/photobiologyPlants/man/UV_PAR.Rd | 15 photobiologyPlants-0.5.0/photobiologyPlants/man/ZTLs.mspct.Rd | 2 photobiologyPlants-0.5.0/photobiologyPlants/man/carotenoids.mspct.Rd | 2 photobiologyPlants-0.5.0/photobiologyPlants/man/chlorophylls.mspct.Rd | 22 photobiologyPlants-0.5.0/photobiologyPlants/man/chlorophylls_fluorescence.mspct.Rd | 8 photobiologyPlants-0.5.0/photobiologyPlants/man/figures/README-example1a-1.png |binary photobiologyPlants-0.5.0/photobiologyPlants/man/figures/README-unnamed-chunk-4-1.png |only photobiologyPlants-0.5.0/photobiologyPlants/vignettes/r4p-introduction.Rmd |only photobiologyPlants-0.5.0/photobiologyPlants/vignettes/user-guide.Rmd | 70 +- 85 files changed, 874 insertions(+), 657 deletions(-)
More information about photobiologyPlants at CRAN
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Title: Extracts Phylogenetic Island Community Data from Phylogenetic
Trees
Description: Extracts colonisation and branching times of island
species to be used for analysis in the R package 'DAISIE'. It uses
phylogenetic and endemicity data to extract the separate island colonists
and store them.
Author: Joshua W. Lambert [aut, cre] ,
Luis Valente [aut] ,
Pedro Santos Neves [aut] ,
Lizzie Roeble [aut] ,
Theo Pannetier [aut]
Maintainer: Joshua W. Lambert <j.w.l.lambert@rug.nl>
Diff between DAISIEprep versions 0.3.2 dated 2023-04-25 and 0.4.0 dated 2024-04-02
DESCRIPTION | 63 +- MD5 | 148 ++-- NEWS.md | 35 + R/DAISIEprep-package.R |only R/add_asr_node_states.R | 29 R/add_missing_species.R | 14 R/default_params_doc.R | 19 R/endemicity_to_sse_states.R | 19 R/write_biogeobears_input.R | 2 README.md | 10 build/vignette.rds |binary inst/doc/Performance.R | 2 inst/doc/Performance.html | 122 +-- inst/doc/Sensitivity.R | 2 inst/doc/Sensitivity.html | 36 - inst/doc/Tutorial.R | 2 inst/doc/Tutorial.html | 681 ++++++++++------------ man/DAISIEprep-package.Rd |only man/Island_colonist-accessors.Rd | 4 man/Island_colonist-class.Rd | 8 man/Island_tbl-accessors.Rd | 4 man/Island_tbl-class.Rd | 8 man/Multi_island_tbl-class.Rd | 6 man/add_asr_node_states.Rd | 26 man/add_island_colonist.Rd | 19 man/add_missing_species.Rd | 6 man/add_multi_missing_species.Rd | 9 man/add_outgroup.Rd | 6 man/any_back_colonisation.Rd | 6 man/any_outgroup.Rd | 2 man/any_polyphyly.Rd | 2 man/as_daisie_datatable.Rd | 10 man/benchmark.Rd | 16 man/bind_colonist_to_tbl.Rd | 14 man/check_phylo_data.Rd | 6 man/create_daisie_data.Rd | 4 man/create_endemicity_status.Rd | 4 man/create_test_phylod.Rd | 4 man/default_params_doc.Rd | 47 - man/extract_asr_clade.Rd | 4 man/extract_biogeobears_ancestral_states_probs.Rd | 2 man/extract_endemic_clade.Rd | 12 man/extract_endemic_singleton.Rd | 12 man/extract_island_species.Rd | 14 man/extract_multi_tip_species.Rd | 12 man/extract_nonendemic.Rd | 12 man/extract_species_asr.Rd | 10 man/extract_species_min.Rd | 10 man/extract_stem_age.Rd | 18 man/extract_stem_age_asr.Rd | 2 man/extract_stem_age_genus.Rd | 2 man/extract_stem_age_min.Rd | 2 man/get_endemic_species.Rd | 2 man/get_sse_tip_states.Rd | 2 man/is_back_colonisation.Rd | 2 man/is_duplicate_colonist.Rd | 8 man/is_identical_island_tbl.Rd | 12 man/is_multi_tip_species.Rd | 2 man/island_colonist.Rd | 17 man/island_tbl.Rd | 4 man/multi_extract_island_species.Rd | 20 man/multi_island_tbl.Rd | 4 man/plot_colonisation.Rd | 4 man/plot_phylod.Rd | 4 man/rm_island_colonist.Rd | 8 man/rm_multi_missing_species.Rd | 13 man/round_up.Rd | 4 man/sensitivity.Rd | 18 man/translate_status.Rd | 3 man/unique_island_genera.Rd | 2 man/write_biogeobears_input.Rd | 2 man/write_newick_file.Rd | 2 man/write_phylip_biogeo_file.Rd | 2 tests/testthat/test-add_asr_node_states.R | 98 +++ tests/testthat/test-add_missing_species.R | 14 tests/testthat/test-endemicity_to_sse_states.R | 21 76 files changed, 1011 insertions(+), 764 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and a R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 0.10.0 dated 2024-03-13 and 0.10.1 dated 2024-04-02
duckdb-0.10.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_fixed_batch_copy.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/execution/physical_plan/plan_limit_percent.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_fixed_batch_copy.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/comment_on_info.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_limit_percent.hpp |only duckdb-0.10.0/duckdb/src/duckdb/src/parser/parsed_data/comment_on_info.cpp |only duckdb-0.10.0/duckdb/src/duckdb/src/planner/operator/logical_limit_percent.cpp |only duckdb-0.10.0/duckdb/tests/testthat/test_ambiguous_prepare.R |only duckdb-0.10.0/duckdb/tests/testthat/test_arrow.R |only duckdb-0.10.0/duckdb/tests/testthat/test_arrow_stream.R |only duckdb-0.10.0/duckdb/tests/testthat/test_backend-dbplyr__duckdb_connection.R |only duckdb-0.10.0/duckdb/tests/testthat/test_bind.R |only duckdb-0.10.0/duckdb/tests/testthat/test_config_keyvalue.R |only duckdb-0.10.0/duckdb/tests/testthat/test_dbinfo.R |only duckdb-0.10.0/duckdb/tests/testthat/test_dbwritetable.R |only duckdb-0.10.0/duckdb/tests/testthat/test_explain.R |only duckdb-0.10.0/duckdb/tests/testthat/test_extension_path.R |only duckdb-0.10.0/duckdb/tests/testthat/test_factor.R |only duckdb-0.10.0/duckdb/tests/testthat/test_fetch.R |only duckdb-0.10.0/duckdb/tests/testthat/test_fetch_arrow.R |only duckdb-0.10.0/duckdb/tests/testthat/test_integer64.R |only duckdb-0.10.0/duckdb/tests/testthat/test_interval.R |only duckdb-0.10.0/duckdb/tests/testthat/test_list.R |only duckdb-0.10.0/duckdb/tests/testthat/test_multi_statement.R |only duckdb-0.10.0/duckdb/tests/testthat/test_null_byte.R |only duckdb-0.10.0/duckdb/tests/testthat/test_parquet.R |only duckdb-0.10.0/duckdb/tests/testthat/test_read.R |only duckdb-0.10.0/duckdb/tests/testthat/test_readonly.R |only duckdb-0.10.0/duckdb/tests/testthat/test_register.R |only duckdb-0.10.0/duckdb/tests/testthat/test_register_arrow.R |only duckdb-0.10.0/duckdb/tests/testthat/test_register_readonly.R |only duckdb-0.10.0/duckdb/tests/testthat/test_relational.R |only duckdb-0.10.0/duckdb/tests/testthat/test_struct.R |only duckdb-0.10.0/duckdb/tests/testthat/test_tbl__duckdb_connection.R |only duckdb-0.10.0/duckdb/tests/testthat/test_timestamp.R |only duckdb-0.10.0/duckdb/tests/testthat/test_timezone.R |only duckdb-0.10.0/duckdb/tests/testthat/test_types.R |only duckdb-0.10.0/duckdb/tests/testthat/test_viewer.R |only duckdb-0.10.1/duckdb/DESCRIPTION | 15 duckdb-0.10.1/duckdb/MD5 | 1166 duckdb-0.10.1/duckdb/NEWS.md | 23 duckdb-0.10.1/duckdb/R/Connection.R | 9 duckdb-0.10.1/duckdb/R/Driver.R | 72 duckdb-0.10.1/duckdb/R/Result.R | 2 duckdb-0.10.1/duckdb/R/backend-dbplyr__duckdb_connection.R | 2 duckdb-0.10.1/duckdb/R/cpp11.R | 20 duckdb-0.10.1/duckdb/R/csv.R | 2 duckdb-0.10.1/duckdb/R/dbBind__duckdb_result.R | 2 duckdb-0.10.1/duckdb/R/dbConnect__duckdb_driver.R | 43 duckdb-0.10.1/duckdb/R/dbDisconnect__duckdb_connection.R | 12 duckdb-0.10.1/duckdb/R/dbGetInfo__duckdb_connection.R | 7 duckdb-0.10.1/duckdb/R/dbGetInfo__duckdb_driver.R | 10 duckdb-0.10.1/duckdb/R/dbIsValid__duckdb_driver.R | 6 duckdb-0.10.1/duckdb/R/dbQuoteIdentifier__duckdb_connection.R | 13 duckdb-0.10.1/duckdb/R/re2.R |only duckdb-0.10.1/duckdb/R/register.R | 4 duckdb-0.10.1/duckdb/README.md | 12 duckdb-0.10.1/duckdb/configure.win | 8 duckdb-0.10.1/duckdb/man/backend-duckdb.Rd | 2 duckdb-0.10.1/duckdb/man/duckdb-package.Rd | 3 duckdb-0.10.1/duckdb/man/duckdb.Rd | 31 duckdb-0.10.1/duckdb/man/duckdb_read_csv.Rd | 2 duckdb-0.10.1/duckdb/src/Makevars.win | 2 duckdb-0.10.1/duckdb/src/connection.cpp | 17 duckdb-0.10.1/duckdb/src/cpp11.cpp | 39 duckdb-0.10.1/duckdb/src/database.cpp | 35 duckdb-0.10.1/duckdb/src/duckdb/extension/parquet/column_reader.cpp | 18 duckdb-0.10.1/duckdb/src/duckdb/extension/parquet/column_writer.cpp | 171 duckdb-0.10.1/duckdb/src/duckdb/extension/parquet/include/column_writer.hpp | 7 duckdb-0.10.1/duckdb/src/duckdb/extension/parquet/parquet_extension.cpp | 23 duckdb-0.10.1/duckdb/src/duckdb/extension/parquet/parquet_timestamp.cpp | 10 duckdb-0.10.1/duckdb/src/duckdb/extension/parquet/parquet_writer.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/catalog/catalog.cpp | 104 duckdb-0.10.1/duckdb/src/duckdb/src/catalog/catalog_entry/duck_table_entry.cpp | 14 duckdb-0.10.1/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/catalog/catalog_entry/view_catalog_entry.cpp | 28 duckdb-0.10.1/duckdb/src/duckdb/src/catalog/default/default_functions.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/catalog/default/default_views.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/catalog/dependency_catalog_set.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/catalog/dependency_manager.cpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/common/adbc/adbc.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/common/adbc/driver_manager.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/common/allocator.cpp | 42 duckdb-0.10.1/duckdb/src/duckdb/src/common/arrow/appender/fixed_size_list_data.cpp |only duckdb-0.10.1/duckdb/src/duckdb/src/common/arrow/appender/union_data.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/common/arrow/arrow_appender.cpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/common/arrow/arrow_converter.cpp | 17 duckdb-0.10.1/duckdb/src/duckdb/src/common/compressed_file_system.cpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/common/enum_util.cpp | 160 duckdb-0.10.1/duckdb/src/duckdb/src/common/enums/logical_operator_type.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/common/enums/physical_operator_type.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/common/exception.cpp | 21 duckdb-0.10.1/duckdb/src/duckdb/src/common/exception/conversion_exception.cpp |only duckdb-0.10.1/duckdb/src/duckdb/src/common/extra_type_info.cpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/common/gzip_file_system.cpp | 9 duckdb-0.10.1/duckdb/src/duckdb/src/common/local_file_system.cpp | 95 duckdb-0.10.1/duckdb/src/duckdb/src/common/operator/cast_operators.cpp | 718 duckdb-0.10.1/duckdb/src/duckdb/src/common/re2_regex.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/common/row_operations/row_heap_scatter.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/common/row_operations/row_matcher.cpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/common/row_operations/row_scatter.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/common/serializer/binary_serializer.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/common/sort/partition_state.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/common/string_util.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/common/types.cpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/bit.cpp | 13 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/blob.cpp | 29 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/column/column_data_allocator.cpp | 14 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/column/column_data_collection.cpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/column/column_data_collection_segment.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/column/partitioned_column_data.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/data_chunk.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/date.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/hugeint.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/interval.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/list_segment.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/row/partitioned_tuple_data.cpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/row/tuple_data_allocator.cpp | 14 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/row/tuple_data_collection.cpp | 39 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/row/tuple_data_scatter_gather.cpp | 256 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/selection_vector.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/string_heap.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/string_type.cpp | 22 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/time.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/timestamp.cpp | 38 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/uhugeint.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/uuid.cpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/validity_mask.cpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/value.cpp | 23 duckdb-0.10.1/duckdb/src/duckdb/src/common/types/vector.cpp | 311 duckdb-0.10.1/duckdb/src/duckdb/src/common/vector_operations/generators.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/common/vector_operations/vector_cast.cpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/common/vector_operations/vector_copy.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/common/vector_operations/vector_hash.cpp | 23 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/aggregate/distributive/arg_min_max.cpp | 36 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/aggregate/distributive/bitagg.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/aggregate/distributive/bitstring_agg.cpp | 17 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/aggregate/distributive/minmax.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/aggregate/distributive/string_agg.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/aggregate/holistic/mode.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/aggregate/holistic/quantile.cpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/function_list.cpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/bit/bitstring.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/date/date_diff.cpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/date/date_part.cpp | 25 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/date/make_date.cpp | 36 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/date/to_interval.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/list/array_slice.cpp | 20 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/list/list_aggregates.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/list/list_reduce.cpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/list/list_sort.cpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/list/list_value.cpp | 40 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/map/map.cpp | 291 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/math/numeric.cpp | 35 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/operators/bitwise.cpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/string/hex.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/string/pad.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/string/repeat.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/string/replace.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/string/string_split.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/core_functions/scalar/string/translate.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/execution/adaptive_filter.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/execution/aggregate_hashtable.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/execution/column_binding_resolver.cpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/execution/expression_executor.cpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/execution/expression_executor/execute_case.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/execution/expression_executor/execute_cast.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/execution/expression_executor/execute_function.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/execution/expression_executor/execute_operator.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/execution/index/art/art.cpp | 18 duckdb-0.10.1/duckdb/src/duckdb/src/execution/index/art/art_key.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/execution/index/art/leaf.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/execution/index/art/node16.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/execution/index/art/node256.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/execution/index/art/node48.cpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/execution/index/art/prefix.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/execution/index/fixed_size_buffer.cpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/aggregate/aggregate_object.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/aggregate/physical_hash_aggregate.cpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/aggregate/physical_streaming_window.cpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/aggregate/physical_ungrouped_aggregate.cpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/buffer_manager/csv_buffer_manager.cpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/base_scanner.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/column_count_scanner.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/string_value_scanner.cpp | 222 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/csv_sniffer.cpp | 15 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/dialect_detection.cpp | 31 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/header_detection.cpp | 85 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/type_detection.cpp | 31 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/type_refinement.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/type_replacement.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/state_machine/csv_state_machine_cache.cpp | 31 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/table_function/csv_file_scanner.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/table_function/global_csv_state.cpp | 87 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/util/csv_error.cpp | 154 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/csv_scanner/util/csv_reader_options.cpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/helper/physical_limit.cpp | 90 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/helper/physical_limit_percent.cpp | 90 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/helper/physical_streaming_limit.cpp | 22 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/helper/physical_transaction.cpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/helper/physical_verify_vector.cpp |only duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/join/physical_asof_join.cpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 31 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/join/physical_range_join.cpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/order/physical_order.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/order/physical_top_n.cpp | 9 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_copy_to_file.cpp | 508 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_insert.cpp | 462 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_to_file.cpp | 275 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/persistent/physical_delete.cpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/persistent/physical_insert.cpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/projection/physical_pivot.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp | 25 duckdb-0.10.1/duckdb/src/duckdb/src/execution/perfect_aggregate_hashtable.cpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/execution/physical_plan/plan_aggregate.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/execution/physical_plan/plan_copy_to_file.cpp | 24 duckdb-0.10.1/duckdb/src/duckdb/src/execution/physical_plan/plan_distinct.cpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/execution/physical_plan/plan_insert.cpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/execution/physical_plan/plan_limit.cpp | 58 duckdb-0.10.1/duckdb/src/duckdb/src/execution/physical_plan_generator.cpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/execution/radix_partitioned_hashtable.cpp | 25 duckdb-0.10.1/duckdb/src/duckdb/src/execution/window_executor.cpp | 132 duckdb-0.10.1/duckdb/src/duckdb/src/execution/window_segment_tree.cpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/function/aggregate/distributive/first.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/function/aggregate/sorted_aggregate_function.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/function/cast/array_casts.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/function/cast/bit_cast.cpp | 26 duckdb-0.10.1/duckdb/src/duckdb/src/function/cast/cast_function_set.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/function/cast/decimal_cast.cpp | 82 duckdb-0.10.1/duckdb/src/duckdb/src/function/cast/default_casts.cpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/function/cast/enum_casts.cpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/function/cast/list_casts.cpp | 38 duckdb-0.10.1/duckdb/src/duckdb/src/function/cast/string_cast.cpp | 78 duckdb-0.10.1/duckdb/src/duckdb/src/function/cast/struct_cast.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/function/cast/time_casts.cpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/function/cast/union_casts.cpp | 28 duckdb-0.10.1/duckdb/src/duckdb/src/function/cast/vector_cast_helpers.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/function/cast_rules.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/function/scalar/compressed_materialization/compress_integral.cpp | 13 duckdb-0.10.1/duckdb/src/duckdb/src/function/scalar/compressed_materialization/compress_string.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/function/scalar/list/list_resize.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/function/scalar/list/list_zip.cpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/function/scalar/nested_functions.cpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/function/scalar/operators/arithmetic.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/function/scalar/operators/multiply.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/function/scalar/operators/subtract.cpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/function/scalar/strftime_format.cpp | 41 duckdb-0.10.1/duckdb/src/duckdb/src/function/scalar/string/like.cpp | 17 duckdb-0.10.1/duckdb/src/duckdb/src/function/scalar/string/regexp.cpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/function/scalar/string/regexp/regexp_extract_all.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/function/scalar/string/suffix.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/arrow.cpp | 29 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/arrow/arrow_array_scan_state.cpp | 30 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/arrow_conversion.cpp | 108 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/copy_csv.cpp | 9 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/range.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/read_csv.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/read_file.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/sniff_csv.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/system/duckdb_columns.cpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/system/duckdb_secrets.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/system/duckdb_sequences.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/system/duckdb_settings.cpp | 14 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/system/test_all_types.cpp | 64 duckdb-0.10.1/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 13 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb.h | 186 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/view_catalog_entry.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/allocator.hpp | 19 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/enum_data.hpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/fixed_size_list_data.hpp |only duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/list.hpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/list_data.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/arrow/appender/varchar_data.hpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/bitpacking.hpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/bswap.hpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/enum_util.hpp | 32 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/enums/catalog_lookup_behavior.hpp |only duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/enums/logical_operator_type.hpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/enums/physical_operator_type.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/enums/prepared_statement_mode.hpp |only duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/enums/statement_type.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/exception.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/exception/conversion_exception.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/exception/parser_exception.hpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/extra_type_info.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/file_opener.hpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/file_system.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/helper.hpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/limits.hpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/local_file_system.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/numeric_utils.hpp | 64 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/operator/cast_operators.hpp | 67 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/operator/decimal_cast_operators.hpp | 274 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/operator/integer_cast_operator.hpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/radix.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/sort/duckdb_pdqsort.hpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/bit.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/blob.hpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/cast_helpers.hpp | 28 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/column/column_data_allocator.hpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/column/column_data_collection.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/column/column_data_collection_segment.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/column/partitioned_column_data.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/row/partitioned_tuple_data.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/row/tuple_data_states.hpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/selection_vector.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/string_heap.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/string_type.hpp | 15 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/time.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/timestamp.hpp | 9 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/uuid.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp | 47 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/types/vector_buffer.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/general_cast.hpp | 16 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/generic_executor.hpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/vector_operations.hpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/windows_undefs.hpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/regression/regr_count.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/core_functions/scalar/list_functions.hpp | 9 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/column_binding_resolver.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/executor.hpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor_state.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/base_scanner.hpp | 50 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_casting.hpp | 61 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_error.hpp | 56 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_reader_options.hpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_sniffer.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_state_machine_cache.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/global_csv_state.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/string_value_scanner.hpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_limit.hpp | 23 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_limit_percent.hpp | 18 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_streaming_limit.hpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_verify_vector.hpp |only duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_hash_join.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/batch_memory_manager.hpp |only duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/batch_task_manager.hpp |only duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_batch_copy_to_file.hpp | 27 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_batch_insert.hpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_copy_to_file.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator_states.hpp | 16 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/physical_plan_generator.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/window_executor.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/execution/window_segment_tree.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/function/cast/cast_function_set.hpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/function/cast/default_casts.hpp | 19 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/function/cast/vector_cast_helpers.hpp | 70 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/function/compression_function.hpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/function/copy_function.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/function/function.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/function/scalar/list/contains_or_position.hpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/function/scalar/nested_functions.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/function/scalar_function.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/function/table/arrow.hpp | 14 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/function/table/read_csv.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/function/table_function.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/attached_database.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/capi/cast/from_decimal.hpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/capi/cast/to_decimal.hpp | 27 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/client_config.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp | 20 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/client_context_file_opener.hpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/client_context_state.hpp | 20 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/database.hpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/database_manager.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/extension/generated_extension_loader.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/extension_entries.hpp | 429 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/extension_helper.hpp | 18 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/relation.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/relation/table_function_relation.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/secret/secret_manager.hpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/main/settings.hpp | 64 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/relation_manager.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/ordered_aggregate_optimizer.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parallel/concurrentqueue.hpp | 26 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parallel/event.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parallel/executor_task.hpp |only duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parallel/interrupt.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parallel/task.hpp | 20 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parallel/task_scheduler.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parser/expression/window_expression.hpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_info.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_info.hpp | 24 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/comment_on_column_info.hpp |only duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_view_info.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/extra_drop_info.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/parse_info.hpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parser/tableref/pivotref.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp | 15 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/planner/bound_result_modifier.hpp | 82 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/planner/expression.hpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/column_alias_binder.hpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/planner/expression_iterator.hpp | 14 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/planner/extension_callback.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/list.hpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_insert.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_limit.hpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/planner/subquery/rewrite_correlated_expressions.hpp | 15 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/arena_allocator.hpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/buffer/buffer_pool.hpp | 45 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/algorithm/alp.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_analyze.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_compress.hpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_utils.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/algorithm/alprd.hpp | 18 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/alprd_analyze.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/alprd_compress.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/algorithm/bit_reader.hpp | 21 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/algorithm/bit_utils.hpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/algorithm/chimp128.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/algorithm/leading_zero_buffer.hpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_scan.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/data_pointer.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/data_table.hpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/index.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/partial_block_manager.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/standard_buffer_manager.hpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/storage_manager.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/table/append_state.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/table/column_checkpoint_state.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data.hpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/table/column_segment.hpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group.hpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group_collection.hpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/table/scan_state.hpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/table/segment_tree.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/storage/temporary_file_manager.hpp |only duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/transaction/duck_transaction_manager.hpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/transaction/meta_transaction.hpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/transaction/transaction.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/main/appender.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/main/attached_database.cpp | 76 duckdb-0.10.1/duckdb/src/duckdb/src/main/capi/appender-c.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/main/capi/cast/utils-c.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/main/capi/data_chunk-c.cpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/main/capi/datetime-c.cpp | 22 duckdb-0.10.1/duckdb/src/duckdb/src/main/capi/duckdb_value-c.cpp | 31 duckdb-0.10.1/duckdb/src/duckdb/src/main/capi/helper-c.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/main/capi/hugeint-c.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/main/capi/logical_types-c.cpp | 36 duckdb-0.10.1/duckdb/src/duckdb/src/main/capi/result-c.cpp | 9 duckdb-0.10.1/duckdb/src/duckdb/src/main/client_context.cpp | 166 duckdb-0.10.1/duckdb/src/duckdb/src/main/client_context_file_opener.cpp | 15 duckdb-0.10.1/duckdb/src/duckdb/src/main/config.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/main/connection_manager.cpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/main/database.cpp | 17 duckdb-0.10.1/duckdb/src/duckdb/src/main/database_manager.cpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/main/extension/extension_helper.cpp | 13 duckdb-0.10.1/duckdb/src/duckdb/src/main/extension/extension_install.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/main/prepared_statement_data.cpp | 29 duckdb-0.10.1/duckdb/src/duckdb/src/main/query_profiler.cpp | 16 duckdb-0.10.1/duckdb/src/duckdb/src/main/relation/read_csv_relation.cpp | 23 duckdb-0.10.1/duckdb/src/duckdb/src/main/relation/value_relation.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/main/secret/secret.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/main/secret/secret_manager.cpp | 49 duckdb-0.10.1/duckdb/src/duckdb/src/main/secret/secret_storage.cpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/main/settings/settings.cpp | 44 duckdb-0.10.1/duckdb/src/duckdb/src/optimizer/filter_combiner.cpp | 34 duckdb-0.10.1/duckdb/src/duckdb/src/optimizer/in_clause_rewriter.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/optimizer/join_order/relation_manager.cpp | 34 duckdb-0.10.1/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_limit.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/optimizer/remove_unused_columns.cpp | 13 duckdb-0.10.1/duckdb/src/duckdb/src/optimizer/rule/ordered_aggregate_optimizer.cpp | 14 duckdb-0.10.1/duckdb/src/duckdb/src/optimizer/rule/regex_optimizations.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_cast.cpp | 72 duckdb-0.10.1/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_join.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_limit.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/optimizer/topn_optimizer.cpp | 23 duckdb-0.10.1/duckdb/src/duckdb/src/parallel/executor.cpp | 27 duckdb-0.10.1/duckdb/src/duckdb/src/parallel/executor_task.cpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/parallel/pipeline.cpp | 18 duckdb-0.10.1/duckdb/src/duckdb/src/parallel/pipeline_executor.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/parallel/pipeline_finish_event.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/parallel/pipeline_initialize_event.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/parallel/task_scheduler.cpp | 23 duckdb-0.10.1/duckdb/src/duckdb/src/parser/parsed_data/alter_table_info.cpp | 18 duckdb-0.10.1/duckdb/src/duckdb/src/parser/parsed_data/comment_on_column_info.cpp |only duckdb-0.10.1/duckdb/src/duckdb/src/parser/parsed_data/create_view_info.cpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/parser/parsed_data/extra_drop_info.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/parser/parser.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/parser/query_error_context.cpp | 16 duckdb-0.10.1/duckdb/src/duckdb/src/parser/statement/export_statement.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/parser/statement/relation_statement.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/parser/tableref/pivotref.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/parser/tableref/showref.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/parser/transform/expression/transform_boolean_test.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/parser/transform/expression/transform_cast.cpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/parser/transform/expression/transform_constant.cpp | 14 duckdb-0.10.1/duckdb/src/duckdb/src/parser/transform/expression/transform_interval.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/parser/transform/helpers/transform_typename.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/parser/transform/statement/transform_comment_on.cpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/parser/transform/statement/transform_pivot_stmt.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/parser/transform/statement/transform_show_select.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/parser/transform/tableref/transform_join.cpp | 16 duckdb-0.10.1/duckdb/src/duckdb/src/parser/transform/tableref/transform_pivot.cpp | 81 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder.cpp | 45 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/expression/bind_lambda.cpp | 15 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/expression/bind_operator_expression.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/expression/bind_star_expression.cpp | 76 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/expression/bind_window_expression.cpp | 36 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/query_node/bind_select_node.cpp | 106 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/query_node/plan_query_node.cpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/query_node/plan_subquery.cpp | 4 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/statement/bind_create.cpp | 18 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/statement/bind_drop.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/statement/bind_export.cpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/statement/bind_insert.cpp | 9 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/statement/bind_simple.cpp | 15 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/tableref/bind_basetableref.cpp | 19 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/tableref/bind_joinref.cpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/tableref/bind_pivot.cpp | 138 duckdb-0.10.1/duckdb/src/duckdb/src/planner/binder/tableref/bind_subqueryref.cpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/planner/bound_result_modifier.cpp | 71 duckdb-0.10.1/duckdb/src/duckdb/src/planner/expression/bound_cast_expression.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/planner/expression/bound_window_expression.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/planner/expression_binder/column_alias_binder.cpp | 23 duckdb-0.10.1/duckdb/src/duckdb/src/planner/expression_binder/having_binder.cpp | 26 duckdb-0.10.1/duckdb/src/duckdb/src/planner/expression_binder/lateral_binder.cpp | 98 duckdb-0.10.1/duckdb/src/duckdb/src/planner/expression_binder/qualify_binder.cpp | 12 duckdb-0.10.1/duckdb/src/duckdb/src/planner/expression_binder/where_binder.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/planner/expression_iterator.cpp | 125 duckdb-0.10.1/duckdb/src/duckdb/src/planner/logical_operator_visitor.cpp | 18 duckdb-0.10.1/duckdb/src/duckdb/src/planner/operator/logical_limit.cpp | 20 duckdb-0.10.1/duckdb/src/duckdb/src/planner/planner.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/planner/subquery/flatten_dependent_join.cpp | 64 duckdb-0.10.1/duckdb/src/duckdb/src/planner/subquery/rewrite_correlated_expressions.cpp | 72 duckdb-0.10.1/duckdb/src/duckdb/src/storage/arena_allocator.cpp | 9 duckdb-0.10.1/duckdb/src/duckdb/src/storage/buffer/block_handle.cpp | 9 duckdb-0.10.1/duckdb/src/duckdb/src/storage/buffer/block_manager.cpp | 10 duckdb-0.10.1/duckdb/src/duckdb/src/storage/buffer/buffer_pool.cpp | 145 duckdb-0.10.1/duckdb/src/duckdb/src/storage/checkpoint/write_overflow_strings_to_disk.cpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/storage/compression/dictionary_compression.cpp | 11 duckdb-0.10.1/duckdb/src/duckdb/src/storage/compression/fsst.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/storage/compression/rle.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/storage/compression/string_uncompressed.cpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/storage/data_table.cpp | 9 duckdb-0.10.1/duckdb/src/duckdb/src/storage/local_storage.cpp | 7 duckdb-0.10.1/duckdb/src/duckdb/src/storage/metadata/metadata_manager.cpp | 8 duckdb-0.10.1/duckdb/src/duckdb/src/storage/metadata/metadata_reader.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/storage/metadata/metadata_writer.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/storage/partial_block_manager.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/storage/serialization/serialize_create_info.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/storage/serialization/serialize_expression.cpp | 3 duckdb-0.10.1/duckdb/src/duckdb/src/storage/serialization/serialize_logical_operator.cpp | 34 duckdb-0.10.1/duckdb/src/duckdb/src/storage/serialization/serialize_nodes.cpp | 22 duckdb-0.10.1/duckdb/src/duckdb/src/storage/serialization/serialize_parse_info.cpp | 44 duckdb-0.10.1/duckdb/src/duckdb/src/storage/standard_buffer_manager.cpp | 426 duckdb-0.10.1/duckdb/src/duckdb/src/storage/statistics/string_stats.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/storage/storage_info.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/src/storage/table/column_checkpoint_state.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/storage/table/column_data.cpp | 23 duckdb-0.10.1/duckdb/src/duckdb/src/storage/table/column_data_checkpointer.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/storage/table/column_segment.cpp | 146 duckdb-0.10.1/duckdb/src/duckdb/src/storage/table/list_column_data.cpp | 1 duckdb-0.10.1/duckdb/src/duckdb/src/storage/table/row_group.cpp | 24 duckdb-0.10.1/duckdb/src/duckdb/src/storage/table/row_group_collection.cpp | 55 duckdb-0.10.1/duckdb/src/duckdb/src/storage/table/update_segment.cpp | 14 duckdb-0.10.1/duckdb/src/duckdb/src/storage/temporary_file_manager.cpp |only duckdb-0.10.1/duckdb/src/duckdb/src/storage/write_ahead_log.cpp | 5 duckdb-0.10.1/duckdb/src/duckdb/src/transaction/commit_state.cpp | 6 duckdb-0.10.1/duckdb/src/duckdb/src/transaction/duck_transaction_manager.cpp | 49 duckdb-0.10.1/duckdb/src/duckdb/src/transaction/meta_transaction.cpp | 24 duckdb-0.10.1/duckdb/src/duckdb/src/transaction/transaction_context.cpp | 9 duckdb-0.10.1/duckdb/src/duckdb/src/transaction/undo_buffer.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/third_party/jaro_winkler/details/common.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp | 2 duckdb-0.10.1/duckdb/src/duckdb/third_party/libpg_query/include/parser/gram.hpp | 1583 duckdb-0.10.1/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |46402 ++++------ duckdb-0.10.1/duckdb/src/duckdb/third_party/mbedtls/include/mbedtls/mbedtls_config.h | 3 duckdb-0.10.1/duckdb/src/duckdb/third_party/mbedtls/library/entropy_poll.cpp | 36 duckdb-0.10.1/duckdb/src/duckdb/third_party/miniz/miniz_wrapper.hpp | 8 duckdb-0.10.1/duckdb/src/duckdb/third_party/tdigest/t_digest.hpp | 6 duckdb-0.10.1/duckdb/src/duckdb/ub_src_common_arrow_appender.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/ub_src_common_exception.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/ub_src_execution_operator_helper.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/ub_src_execution_operator_persistent.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/ub_src_execution_physical_plan.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/ub_src_parser_parsed_data.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/ub_src_planner_operator.cpp | 2 duckdb-0.10.1/duckdb/src/duckdb/ub_src_storage.cpp | 2 duckdb-0.10.1/duckdb/src/include/rapi.hpp | 66 duckdb-0.10.1/duckdb/src/librstrtmgr.a.gz |only duckdb-0.10.1/duckdb/src/register.cpp | 60 duckdb-0.10.1/duckdb/tests/testthat/_snaps/types.md | 2 duckdb-0.10.1/duckdb/tests/testthat/helper-DBItest.R | 6 duckdb-0.10.1/duckdb/tests/testthat/test-DBItest.R | 143 duckdb-0.10.1/duckdb/tests/testthat/test-ambiguous_prepare.R |only duckdb-0.10.1/duckdb/tests/testthat/test-arrow.R |only duckdb-0.10.1/duckdb/tests/testthat/test-arrow_stream.R |only duckdb-0.10.1/duckdb/tests/testthat/test-backend-dbplyr__duckdb_connection.R |only duckdb-0.10.1/duckdb/tests/testthat/test-bind.R |only duckdb-0.10.1/duckdb/tests/testthat/test-config_keyvalue.R |only duckdb-0.10.1/duckdb/tests/testthat/test-connect.R |only duckdb-0.10.1/duckdb/tests/testthat/test-dbinfo.R |only duckdb-0.10.1/duckdb/tests/testthat/test-dbwritetable.R |only duckdb-0.10.1/duckdb/tests/testthat/test-explain.R |only duckdb-0.10.1/duckdb/tests/testthat/test-extension_path.R |only duckdb-0.10.1/duckdb/tests/testthat/test-factor.R |only duckdb-0.10.1/duckdb/tests/testthat/test-fetch.R |only duckdb-0.10.1/duckdb/tests/testthat/test-fetch_arrow.R |only duckdb-0.10.1/duckdb/tests/testthat/test-integer64.R |only duckdb-0.10.1/duckdb/tests/testthat/test-interval.R |only duckdb-0.10.1/duckdb/tests/testthat/test-list.R |only duckdb-0.10.1/duckdb/tests/testthat/test-multi_statement.R |only duckdb-0.10.1/duckdb/tests/testthat/test-null_byte.R |only duckdb-0.10.1/duckdb/tests/testthat/test-parquet.R |only duckdb-0.10.1/duckdb/tests/testthat/test-read.R |only duckdb-0.10.1/duckdb/tests/testthat/test-readonly.R |only duckdb-0.10.1/duckdb/tests/testthat/test-register.R |only duckdb-0.10.1/duckdb/tests/testthat/test-register_arrow.R |only duckdb-0.10.1/duckdb/tests/testthat/test-register_readonly.R |only duckdb-0.10.1/duckdb/tests/testthat/test-rel_api.R | 174 duckdb-0.10.1/duckdb/tests/testthat/test-relational.R |only duckdb-0.10.1/duckdb/tests/testthat/test-shutdown.R | 2 duckdb-0.10.1/duckdb/tests/testthat/test-struct.R |only duckdb-0.10.1/duckdb/tests/testthat/test-tbl__duckdb_connection.R |only duckdb-0.10.1/duckdb/tests/testthat/test-timestamp.R |only duckdb-0.10.1/duckdb/tests/testthat/test-timezone.R |only duckdb-0.10.1/duckdb/tests/testthat/test-types.R |only duckdb-0.10.1/duckdb/tests/testthat/test-viewer.R |only 627 files changed, 33395 insertions(+), 28905 deletions(-)
Title: Tree-Based Scan Statistics
Description: Implementation of unconditional Bernoulli Scan Statistic developed
by Kulldorff et al. (2003) <doi:10.1111/1541-0420.00039>
for hierarchical tree structures. Tree-based Scan Statistics are an
exploratory method to identify event clusters across the space of a
hierarchical tree.
Author: Joshua P. Entrop [aut, cre, cph]
,
Viktor Wintzell [aut]
Maintainer: Joshua P. Entrop <joshuaentrop@posteo.de>
Diff between TreeMineR versions 1.0.0 dated 2024-03-22 and 1.0.1 dated 2024-04-02
DESCRIPTION | 10 ++-- MD5 | 26 +++++------ NEWS.md | 7 +-- R/TreeMineR.R | 7 +-- R/create_tree.R | 4 - R/drop_cuts.R | 6 +- man/TreeMineR.Rd | 92 ++++++++++++++++++++--------------------- man/atc_codes.Rd | 4 - man/create_tree.Rd | 14 +++--- man/diagnoses.Rd | 8 +-- man/drop_cuts.Rd | 42 +++++++++--------- man/icd_10_se.Rd | 4 - man/icd_10_se_dict.Rd | 4 - tests/testthat/test-calc_llr.R | 2 14 files changed, 115 insertions(+), 115 deletions(-)
Title: Estimation of the Weights Attached to the Two-Way Fixed Effects
Regressions
Description: Estimates the weights and measure of robustness to treatment effect heterogeneity attached to two-way fixed effects regressions.
Clément de Chaisemartin, Xavier D'Haultfœuille (2020) <DOI: 10.1257/aer.20181169>.
Author: Diego Ciccia [aut, cre],
Felix Knau [aut],
Melitine Malezieux [aut],
Doulo Sow [aut],
Shuo Zhang [aut],
Clement de Chaisemartin [aut],
Grant McDermott [ctb]
Maintainer: Diego Ciccia <diego.ciccia@sciencespo.fr>
Diff between TwoWayFEWeights versions 2.0.0 dated 2024-01-09 and 2.0.1 dated 2024-04-02
TwoWayFEWeights-2.0.0/TwoWayFEWeights/R/twowayfeweights_results.R |only TwoWayFEWeights-2.0.1/TwoWayFEWeights/DESCRIPTION | 6 TwoWayFEWeights-2.0.1/TwoWayFEWeights/LICENSE | 4 TwoWayFEWeights-2.0.1/TwoWayFEWeights/MD5 | 20 TwoWayFEWeights-2.0.1/TwoWayFEWeights/NAMESPACE | 28 TwoWayFEWeights-2.0.1/TwoWayFEWeights/R/twowayfeweights.R | 34 TwoWayFEWeights-2.0.1/TwoWayFEWeights/R/twowayfeweights_calculate.R | 75 - TwoWayFEWeights-2.0.1/TwoWayFEWeights/R/twowayfeweights_normalize_var.R | 10 TwoWayFEWeights-2.0.1/TwoWayFEWeights/R/twowayfeweights_result.R |only TwoWayFEWeights-2.0.1/TwoWayFEWeights/R/utils.R | 50 - TwoWayFEWeights-2.0.1/TwoWayFEWeights/man/print.twowayfeweights.Rd | 115 +- TwoWayFEWeights-2.0.1/TwoWayFEWeights/man/twowayfeweights.Rd | 395 ++++------ 12 files changed, 368 insertions(+), 369 deletions(-)
More information about TwoWayFEWeights at CRAN
Permanent link
Title: Probability Computations on Pedigrees
Description: An implementation of the Elston-Stewart algorithm for
calculating pedigree likelihoods given genetic marker data (Elston and
Stewart (1971) <doi:10.1159/000152448>). The standard algorithm is
extended to allow inbred founders. 'pedprobr' is part of the 'ped
suite', a collection of packages for pedigree analysis in R. In
particular, 'pedprobr' depends on 'pedtools' for pedigree
manipulations and 'pedmut' for mutation modelling. For more
information, see 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedprobr versions 0.9.2 dated 2024-02-28 and 0.9.3 dated 2024-04-02
DESCRIPTION | 6 +- MD5 | 34 +++++------ NEWS.md | 11 +++ R/genoCombinations.R | 98 ++++++++++++++++++++++------------ R/likelihood.R | 39 +++++++------ R/oneMarkerDistribution.R | 27 +++++---- R/reduceAlleles.R | 31 ++++++---- R/startdata.R | 4 + R/utils.R | 40 +++++++++++++ README.md | 45 ++++++++------- build/partial.rdb |binary man/genoCombinations.Rd | 4 - man/likelihood.Rd | 3 + man/oneMarkerDistribution.Rd | 2 tests/testthat/test-inbred-founders.R | 2 tests/testthat/test-likelihood-list.R | 17 ++--- tests/testthat/test-likelihood.R | 12 ++++ tests/testthat/test-oneMarkerDist.R | 8 ++ 18 files changed, 253 insertions(+), 130 deletions(-)
Title: Bayesian Generalized Linear Regression
Description: Bayesian Generalized Linear Regression.
Author: Gustavo de los Campos, Paulino Perez Rodriguez
Maintainer: Paulino Perez Rodriguez <perpdgo@colpos.mx>
Diff between BGLR versions 1.1.1 dated 2023-12-09 and 1.1.2 dated 2024-04-02
CHANGELOG | 5 DESCRIPTION | 6 MD5 | 43 ++--- R/BGLR.R | 6 R/BLRCross.R | 255 +++++++++++++++++++++++++++++----- R/Multitrait.R | 108 ++++++++------ inst/md/BRR_sets.md | 2 inst/md/Fixed_effects_multitrait.md |only inst/md/GBLUP.md | 3 inst/md/GxE_usingInteractions.md | 6 inst/md/PC.md | 7 inst/md/RKHS.md | 7 inst/md/Validation.md | 4 inst/md/censored.md | 14 + inst/md/heritability.md | 2 inst/md/heterogeneity_interactions.md | 2 inst/md/hyperparameters.md | 2 inst/md/omicIntegration.md | 4 inst/md/simulationHumanGenos.md | 2 man/BLRCross.Rd | 125 +++++++++++++--- man/BLRXy.Rd | 152 +++++++++++--------- src/init.c | 2 src/sampler_multitrait.c | 110 ++++++++++++++ 23 files changed, 651 insertions(+), 216 deletions(-)