Title: A Modular Framework for Statistical Simulations in R
Description: An open-source R package for structuring, maintaining, running, and debugging statistical simulations on both local and cluster-based computing environments.See full documentation at <https://avi-kenny.github.io/SimEngine/>.
Author: Avi Kenny [aut, cre],
Charles Wolock [aut]
Maintainer: Avi Kenny <avi.kenny@gmail.com>
Diff between SimEngine versions 1.3.0 dated 2023-10-26 and 1.4.0 dated 2024-04-03
SimEngine-1.3.0/SimEngine/R/create_function_reference.R |only SimEngine-1.4.0/SimEngine/DESCRIPTION | 14 SimEngine-1.4.0/SimEngine/MD5 | 99 +- SimEngine-1.4.0/SimEngine/NEWS.md | 11 SimEngine-1.4.0/SimEngine/R/batch.R | 19 SimEngine-1.4.0/SimEngine/R/cluster_execute.R | 6 SimEngine-1.4.0/SimEngine/R/get_complex.R | 17 SimEngine-1.4.0/SimEngine/R/misc_functions.R | 12 SimEngine-1.4.0/SimEngine/R/new_sim.R | 11 SimEngine-1.4.0/SimEngine/R/run.R | 10 SimEngine-1.4.0/SimEngine/R/run_on_cluster.R | 93 +- SimEngine-1.4.0/SimEngine/R/set_config.R | 8 SimEngine-1.4.0/SimEngine/R/set_levels.R | 54 - SimEngine-1.4.0/SimEngine/R/set_script.R | 43 - SimEngine-1.4.0/SimEngine/R/summarize.R | 190 ++-- SimEngine-1.4.0/SimEngine/R/update_sim.R | 2 SimEngine-1.4.0/SimEngine/R/update_sim_on_cluster.R | 132 +-- SimEngine-1.4.0/SimEngine/R/vars.R | 17 SimEngine-1.4.0/SimEngine/README.md | 9 SimEngine-1.4.0/SimEngine/build/vignette.rds |binary SimEngine-1.4.0/SimEngine/inst/doc/SimEngine.R | 84 -- SimEngine-1.4.0/SimEngine/inst/doc/SimEngine.Rmd | 128 +-- SimEngine-1.4.0/SimEngine/inst/doc/SimEngine.html | 394 +++++----- SimEngine-1.4.0/SimEngine/inst/doc/advanced-functionality.R |only SimEngine-1.4.0/SimEngine/inst/doc/advanced-functionality.Rmd |only SimEngine-1.4.0/SimEngine/inst/doc/advanced-functionality.html |only SimEngine-1.4.0/SimEngine/inst/doc/example_1.R | 6 SimEngine-1.4.0/SimEngine/inst/doc/example_1.Rmd | 5 SimEngine-1.4.0/SimEngine/inst/doc/example_1.html | 114 +- SimEngine-1.4.0/SimEngine/inst/doc/example_2.R | 12 SimEngine-1.4.0/SimEngine/inst/doc/example_2.Rmd | 7 SimEngine-1.4.0/SimEngine/inst/doc/example_2.html | 377 ++++----- SimEngine-1.4.0/SimEngine/inst/doc/parallelization.R |only SimEngine-1.4.0/SimEngine/inst/doc/parallelization.Rmd |only SimEngine-1.4.0/SimEngine/inst/doc/parallelization.html |only SimEngine-1.4.0/SimEngine/man/SimEngine-package.Rd | 8 SimEngine-1.4.0/SimEngine/man/batch.Rd | 19 SimEngine-1.4.0/SimEngine/man/get_complex.Rd | 17 SimEngine-1.4.0/SimEngine/man/new_sim.Rd | 8 SimEngine-1.4.0/SimEngine/man/run.Rd | 2 SimEngine-1.4.0/SimEngine/man/run_on_cluster.Rd | 93 +- SimEngine-1.4.0/SimEngine/man/set_config.Rd | 8 SimEngine-1.4.0/SimEngine/man/set_levels.Rd | 46 - SimEngine-1.4.0/SimEngine/man/set_script.Rd | 37 SimEngine-1.4.0/SimEngine/man/summarize.Rd | 78 + SimEngine-1.4.0/SimEngine/man/update_sim.Rd | 2 SimEngine-1.4.0/SimEngine/man/update_sim_on_cluster.Rd | 134 +-- SimEngine-1.4.0/SimEngine/man/vars.Rd | 19 SimEngine-1.4.0/SimEngine/tests/testthat/test-batch.R | 3 SimEngine-1.4.0/SimEngine/tests/testthat/test-error-handling.R | 37 SimEngine-1.4.0/SimEngine/vignettes/SimEngine.Rmd | 128 +-- SimEngine-1.4.0/SimEngine/vignettes/advanced-functionality.Rmd |only SimEngine-1.4.0/SimEngine/vignettes/example_1.Rmd | 5 SimEngine-1.4.0/SimEngine/vignettes/example_2.Rmd | 7 SimEngine-1.4.0/SimEngine/vignettes/parallelization.Rmd |only 55 files changed, 1231 insertions(+), 1294 deletions(-)
Title: Functions for Wayne W. Daniel's Biostatistics, Tenth Edition
Description: Functions to accompany Wayne W. Daniel's
Biostatistics: A Foundation for Analysis in the Health
Sciences, Tenth Edition.
Author: Tingting Zhan [aut, cre, cph]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between DanielBiostatistics10th versions 0.1.10 dated 2023-11-27 and 0.1.11 dated 2024-04-03
DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/R/DanielBiostatistics10th.R |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/R/Gosset_Welch_vanilla.R |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/R/addProbs_vanilla.R |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/inst/developer |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/inst/example |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/inst/extdata |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/Chapter03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C01_S04_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C02_S05_05.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C06_S02_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C07_S02_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C07_S03_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C07_S04_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C07_S07_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C08_S02_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C08_S03_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C08_S04_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C08_S04_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C08_S05_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C09_S03_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C09_S07_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C10_S03_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C10_S06_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C11_S01_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C11_S01_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C11_S02_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C11_S02_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C11_S03_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C11_S04_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C11_S05_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C12_S02_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C13_S03_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C13_S05_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C13_S06_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C13_S07_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C13_S08_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C13_S09_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C13_S09_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C13_S10_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C13_S10_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C14_S03_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXA_C14_S05_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C02_S03_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C02_S03_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C02_S03_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C02_S03_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C02_S03_05.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C02_S03_06.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C02_S03_07.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C02_S03_08.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C02_S03_09.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C02_S03_11.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C02_S03_12.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C02_S05_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C02_S05_06.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C06_S02_05.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C06_S04_10.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C06_S09_07.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C06_S10_07.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S02_13.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S02_15.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S02_16.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S03_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S03_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S03_05.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S03_10.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S03_11.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S03_12.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S04_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S04_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S04_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S04_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C07_S08_07.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S02_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S02_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S02_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S02_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S02_05.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S02_06.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S02_07.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S03_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S03_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S03_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S03_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S03_05.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S04_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S04_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S04_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S04_06.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S05_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S05_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S05_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C08_S05_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C09_S03_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C09_S03_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C09_S03_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C09_S03_06.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C09_S03_07.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C09_S07_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C09_S07_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C09_S07_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C09_S07_05.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C09_S07_06.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C10_S03_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C10_S03_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C10_S03_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C10_S03_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C10_S03_05.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C10_S03_06.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C10_S06_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C10_S06_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C10_S06_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C10_S06_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C11_S02_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C11_S02_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C11_S02_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C11_S02_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C11_S03_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C11_S03_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C11_S03_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C11_S04_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C11_S04_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C11_S05_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C11_S05_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C11_S05_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S05_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S05_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S06_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S06_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S06_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S07_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S08_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S08_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S08_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S08_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S08_05.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S08_06.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S09_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S09_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S09_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S10_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S10_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S10_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S10_04.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S10_05.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C13_S10_06.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C14_S03_01.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C14_S03_02.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/EXR_C14_S04_03.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C02_NCBIRTH800.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C06_BABYWGTS.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C06_BOYHGTS.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C06_CHOLEST.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C07_HEADCIRC.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C07_HEMOGLOB.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C07_MANDEXT.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C07_PCKDATA.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C07_PROTHROM.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C08_CSFDATA.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C08_LSADATA.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C08_MEDSCORES.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C08_RBCDATA.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C08_SACEDATA.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C08_SERUMCHO.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C09_CALCIUM.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C09_CEREBRAL.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C09_HYPERTEN.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C10_LTEXER.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C10_RESPDIS.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C10_RISKFACT.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C10_STERLENGTH.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C11_AQUATICS.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C11_TEACHERS.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C11_WGTLOSS.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C12_SMOKING.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/LDS_C13_KLETTER.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C02_13.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C02_15.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C02_16.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C02_19.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C02_29.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C06_22.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C06_23.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C06_28.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_18.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_19.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_22.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_24.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_29.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_40.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_41.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_42.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_43.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_44.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_45.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_46.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_47.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_48.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_49.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_50.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_51.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_52.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_53.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_54.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C07_55.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_13.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_14.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_15.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_16.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_17.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_18.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_19.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_20.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_21.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_22.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_23.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_24.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_25.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_31.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_32.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_33.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_39.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_40.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_41.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_42.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_43.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_44.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_45.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_46.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_47.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_48.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_49.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_50.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_51.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_52.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_53.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_54.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_55.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_56.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_57.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_58.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_59.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_60.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_61.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_62.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_63.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_64.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_65.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C08_66.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_16.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_17.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_18.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_19.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_20.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_21.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_22.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_23.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_24.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_25.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_29.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_30.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_31.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_32.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_33.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_34.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_35.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_36.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_37.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_38.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_39.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_40.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_41.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_42.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_43.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_44.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_45.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C09_46.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C10_06.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C10_07.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C10_08.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C10_09.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C10_10.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C10_11.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C10_17.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C10_18.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C10_19.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C11_14.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C11_15.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C11_16.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C11_17.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C11_18.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C11_22.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C11_23.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C11_24.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C11_25.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C11_26.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C11_27.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C11_28.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C11_29.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_06.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_08.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_09.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_10.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_13.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_15.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_16.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_17.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_18.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_19.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_20.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_21.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_22.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_23.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_24.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_25.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_26.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_27.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_28.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C13_29.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C14_11.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/REV_C14_12.Rd |only DanielBiostatistics10th-0.1.10/DanielBiostatistics10th/man/show-addedProbs-method.Rd |only DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/DESCRIPTION | 27 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/MD5 | 729 ---- DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/NAMESPACE | 42 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/NEWS.md | 3 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/0PACKAGE.R |only DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/BooleanTable.R | 64 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/Gosset_Welch.R |only DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/addProbs.R |only DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/chp1.R | 9 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/chp11.R | 16 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/chp12.R | 9 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/chp2.R | 31 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/chp3.R | 38 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/chp4.R | 26 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/chp5.6.7.R | 35 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/chp7.power.R | 20 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/chp9.R | 14 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/R/data_doc.R | 1640 ++-------- DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/build/partial.rdb |binary DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/data/data.rda |binary DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/inst/extexample |only DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/BooleanTable.Rd | 4 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/Chapter01.Rd | 7 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/Chapter02.Rd | 14 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/Chapter04.Rd | 8 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/Chapter05to07.Rd | 28 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/Chapter07_power.Rd | 8 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/Chapter09.Rd | 6 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/Chapter11.Rd | 6 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/Chapter12.Rd | 6 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/DanielBiostatistics10th-package.Rd | 7 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/EXA.Rd |only DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/EXR.Rd |only DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/Gosset_Welch.Rd | 4 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/LDS.Rd |only DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/REV.Rd |only DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/addProbs.Rd | 18 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/autoplot.BooleanTable.Rd | 7 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/binom2pois.Rd | 4 DanielBiostatistics10th-0.1.11/DanielBiostatistics10th/man/summary.BooleanTable.Rd | 2 362 files changed, 638 insertions(+), 2194 deletions(-)
More information about DanielBiostatistics10th at CRAN
Permanent link
Title: Analysis of Single-Cell Chromatin Data
Description: A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.
Author: Tim Stuart [aut, cre] ,
Avi Srivastava [aut] ,
Paul Hoffman [ctb] ,
Rahul Satija [ctb]
Maintainer: Tim Stuart <stuartt@gis.a-star.edu.sg>
Diff between Signac versions 1.12.0 dated 2023-11-08 and 1.13.0 dated 2024-04-03
Signac-1.12.0/Signac/src/Makevars.win |only Signac-1.13.0/Signac/DESCRIPTION | 12 ++-- Signac-1.13.0/Signac/MD5 | 31 ++++++------ Signac-1.13.0/Signac/NAMESPACE | 3 + Signac-1.13.0/Signac/NEWS.md | 19 +++++++ Signac-1.13.0/Signac/R/footprinting.R | 5 +- Signac-1.13.0/Signac/R/fragments.R | 4 - Signac-1.13.0/Signac/R/links.R | 33 +++++++++---- Signac-1.13.0/Signac/R/objects.R | 36 +++++++------- Signac-1.13.0/Signac/R/region-enrichment.R | 11 +--- Signac-1.13.0/Signac/R/utilities.R | 71 ++++++++++++++++++++++++----- Signac-1.13.0/Signac/R/visualization.R | 24 +++++++++ Signac-1.13.0/Signac/README.md | 2 Signac-1.13.0/Signac/man/CoveragePlot.Rd | 6 ++ Signac-1.13.0/Signac/man/GetLinkedGenes.Rd | 10 +++- Signac-1.13.0/Signac/man/GetLinkedPeaks.Rd | 10 +++- Signac-1.13.0/Signac/man/corSparse.Rd |only Signac-1.13.0/Signac/src/Makevars |only 18 files changed, 203 insertions(+), 74 deletions(-)
Title: Creating Demographic Table
Description: Functions for creating demographic
table with simple summary statistics, with
optional comparison(s) over one or more
groups. Numeric variables are summarized in
means, standard deviations, medians,
inter-quartile-ranges (IQR), skewness,
Shapiro-Wilk normality test and ranges, and
compared using two-sample t-test, Wilcoxon
test, ANOVA and/or Kruskal-Wallis test.
Logical and factor variables are summarized
in counts and percentages and compared using
chi-squared test and/or Fisher's exact test.
Author: Tingting Zhan [aut, cre, cph]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between DemographicTable versions 0.1.6 dated 2022-07-22 and 0.1.7 dated 2024-04-03
DemographicTable-0.1.6/DemographicTable/R/DemographicTable_info.R |only DemographicTable-0.1.7/DemographicTable/DESCRIPTION | 45 - DemographicTable-0.1.7/DemographicTable/MD5 | 31 - DemographicTable-0.1.7/DemographicTable/NAMESPACE | 22 DemographicTable-0.1.7/DemographicTable/NEWS.md | 2 DemographicTable-0.1.7/DemographicTable/R/0PACKAGE.R |only DemographicTable-0.1.7/DemographicTable/R/DemographicTable.R | 304 +++++----- DemographicTable-0.1.7/DemographicTable/R/class1List.R | 18 DemographicTable-0.1.7/DemographicTable/R/pval_shapiro.R | 33 - DemographicTable-0.1.7/DemographicTable/R/summaryText.R | 81 +- DemographicTable-0.1.7/DemographicTable/inst |only DemographicTable-0.1.7/DemographicTable/man/DemographicTable-package.Rd | 9 DemographicTable-0.1.7/DemographicTable/man/DemographicTable.Rd | 58 + DemographicTable-0.1.7/DemographicTable/man/as_flextable.DemographicTable.Rd | 15 DemographicTable-0.1.7/DemographicTable/man/class1List.Rd | 10 DemographicTable-0.1.7/DemographicTable/man/pval_shapiro.Rd | 30 DemographicTable-0.1.7/DemographicTable/man/summaryText.Rd | 25 DemographicTable-0.1.7/DemographicTable/man/xtable.DemographicTable.Rd | 9 18 files changed, 408 insertions(+), 284 deletions(-)
More information about DemographicTable at CRAN
Permanent link
Title: Latent Class Analysis with Dirichlet Diffusion Tree Process
Prior
Description: Implements a Bayesian algorithm for overcoming weak separation in Bayesian latent class analysis.
Reference: Li et al. (2023) <arXiv:2306.04700>.
Author: Mengbing Li [cre, aut] ,
Briana Stephenson [ctb],
Zhenke Wu [ctb]
Maintainer: Mengbing Li <mengbing@umich.edu>
Diff between ddtlcm versions 0.1.1 dated 2023-09-14 and 0.2.1 dated 2024-04-03
ddtlcm-0.1.1/ddtlcm/R/RcppExports.R |only ddtlcm-0.1.1/ddtlcm/data/data_hchs.RData |only ddtlcm-0.1.1/ddtlcm/data/result_hchs.RData |only ddtlcm-0.1.1/ddtlcm/inst/K6_test.pdf |only ddtlcm-0.1.1/ddtlcm/inst/REFERENCES.bib |only ddtlcm-0.1.1/ddtlcm/inst/ddtlcm_workflow_example.Rmd |only ddtlcm-0.1.1/ddtlcm/inst/ddtlcm_workflow_example.pdf |only ddtlcm-0.1.1/ddtlcm/man/data_hchs.Rd |only ddtlcm-0.1.1/ddtlcm/man/ddtlcm.Rd |only ddtlcm-0.1.1/ddtlcm/man/result_hchs.Rd |only ddtlcm-0.2.1/ddtlcm/DESCRIPTION | 29 +- ddtlcm-0.2.1/ddtlcm/MD5 | 137 ++++++----- ddtlcm-0.2.1/ddtlcm/NAMESPACE | 3 ddtlcm-0.2.1/ddtlcm/NEWS.md |only ddtlcm-0.2.1/ddtlcm/R/Gibbs_lcm.R | 6 ddtlcm-0.2.1/ddtlcm/R/MH_tree.R | 38 ++- ddtlcm-0.2.1/ddtlcm/R/data.R | 15 - ddtlcm-0.2.1/ddtlcm/R/ddtlcm-package.R | 32 -- ddtlcm-0.2.1/ddtlcm/R/ddtlcm_fit.R | 27 +- ddtlcm-0.2.1/ddtlcm/R/initialization.R | 48 ++-- ddtlcm-0.2.1/ddtlcm/R/loglikehoods.R | 8 ddtlcm-0.2.1/ddtlcm/R/plot_functions.R | 225 ++++++++++++++----- ddtlcm-0.2.1/ddtlcm/R/predict.R | 28 +- ddtlcm-0.2.1/ddtlcm/R/print_functions.R | 16 - ddtlcm-0.2.1/ddtlcm/R/simulate_DDT_functions.R | 26 +- ddtlcm-0.2.1/ddtlcm/R/summary_functions.R | 32 +- ddtlcm-0.2.1/ddtlcm/R/utils.R | 86 +++---- ddtlcm-0.2.1/ddtlcm/README.md | 51 ++++ ddtlcm-0.2.1/ddtlcm/build/vignette.rds |binary ddtlcm-0.2.1/ddtlcm/data/data_synthetic.RData |binary ddtlcm-0.2.1/ddtlcm/data/parameter_diet.RData |only ddtlcm-0.2.1/ddtlcm/data/result_diet_1000iters.RData |only ddtlcm-0.2.1/ddtlcm/inst/doc/ddtlcm-demo.R | 15 - ddtlcm-0.2.1/ddtlcm/inst/doc/ddtlcm-demo.Rmd | 27 +- ddtlcm-0.2.1/ddtlcm/inst/doc/ddtlcm-demo.html | 180 ++++++++------- ddtlcm-0.2.1/ddtlcm/man/a_t_one.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/a_t_two.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/compute_IC.Rd | 4 ddtlcm-0.2.1/ddtlcm/man/create_leaf_cor_matrix.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/ddtlcm-package.Rd |only ddtlcm-0.2.1/ddtlcm/man/ddtlcm_fit.Rd | 10 ddtlcm-0.2.1/ddtlcm/man/div_time.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/draw_mnorm.Rd | 6 ddtlcm-0.2.1/ddtlcm/man/exp_normalize.Rd | 4 ddtlcm-0.2.1/ddtlcm/man/initialize.Rd | 8 ddtlcm-0.2.1/ddtlcm/man/initialize_hclust.Rd | 6 ddtlcm-0.2.1/ddtlcm/man/initialize_poLCA.Rd | 4 ddtlcm-0.2.1/ddtlcm/man/log_expit.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/logit.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/logllk_ddt.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/logllk_ddt_lcm.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/logllk_div_time_one.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/logllk_div_time_two.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/logllk_lcm.Rd | 4 ddtlcm-0.2.1/ddtlcm/man/logllk_location.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/logllk_tree_topology.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/parameter_diet.Rd |only ddtlcm-0.2.1/ddtlcm/man/plot.ddt_lcm.Rd |only ddtlcm-0.2.1/ddtlcm/man/plot.summary.ddt_lcm.Rd | 6 ddtlcm-0.2.1/ddtlcm/man/plot_tree_with_barplot.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/plot_tree_with_heatmap.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/predict.ddt_lcm.Rd | 8 ddtlcm-0.2.1/ddtlcm/man/predict.summary.ddt_lcm.Rd | 10 ddtlcm-0.2.1/ddtlcm/man/print.ddt_lcm.Rd | 4 ddtlcm-0.2.1/ddtlcm/man/print.summary.ddt_lcm.Rd | 6 ddtlcm-0.2.1/ddtlcm/man/reattach_point.Rd | 4 ddtlcm-0.2.1/ddtlcm/man/result_diet_1000iters.Rd |only ddtlcm-0.2.1/ddtlcm/man/sample_class_assignment.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/sample_leaf_locations_pg.Rd | 2 ddtlcm-0.2.1/ddtlcm/man/simulate_lcm_given_tree.Rd | 12 - ddtlcm-0.2.1/ddtlcm/man/simulate_lcm_response.Rd | 6 ddtlcm-0.2.1/ddtlcm/man/summary.ddt_lcm.Rd | 8 ddtlcm-0.2.1/ddtlcm/tests |only ddtlcm-0.2.1/ddtlcm/vignettes/ddtlcm-demo.Rmd | 27 +- 74 files changed, 712 insertions(+), 486 deletions(-)
Title: Ensemble Learning for HIV-Related Metrics
Description: Advanced statistical modeling techniques for ensemble learning, specifically tailored to the analysis of lymphocyte counts and viral load data in the context of HIV research. Empowering researchers and practitioners, this tool provides a comprehensive solution for tasks such as analysis, prediction and risk calculation related to key viral metrics. The package incorporates cutting-edge ensemble learning principles, inspired by model stacking techniques of Simon P. Couch and Max Kuhn (2022) <doi:10.21105/joss.04471> and adhering to tidy data principles, offering a robust and reproducible framework for HIV research.
Author: Juan Pablo Acuna Gonzalez [aut, cre, cph]
,
Maria de los Angeles Salgado Jimenez [aut]
,
Baltazar Joanico Morales [aut]
,
Juan Villagomez Mendez [aut]
Maintainer: Juan Pablo Acuna Gonzalez <acua6307@gmail.com>
Diff between viruslearner versions 0.0.1 dated 2024-01-31 and 0.0.2 dated 2024-04-03
DESCRIPTION | 19 + MD5 | 59 +++-- R/cd_ens.R | 303 +++++++++++++++++++++------- R/cd_fit.R | 20 - R/cd_stack.R | 20 - R/data.R | 138 ++++++++++++ build/vignette.rds |only data/cd_test.rda |binary data/cd_train.rda |binary data/mortality.rda |only data/viral_new.rda |only data/viralrates.rda |binary data/vl_test.rda |binary data/vl_train.rda |binary inst |only man/cd_ens.Rd | 21 + man/cd_test.Rd | 11 - man/cd_train.Rd | 11 - man/mortality.Rd |only man/viral_new.Rd |only man/viralrates.Rd | 13 + man/viruslearner-package.Rd | 2 man/vl_test.Rd | 12 + man/vl_train.Rd | 12 + tests/testthat/_snaps/cd_ens.md | 19 - tests/testthat/_snaps/cd_fit.md | 6 tests/testthat/_snaps/cd_stack/cd-stack.svg | 50 ++-- tests/testthat/test-cd_ens.R | 7 tests/testthat/test-cd_fit.R | 6 tests/testthat/test-cd_stack.R | 4 vignettes |only 31 files changed, 552 insertions(+), 181 deletions(-)
Title: Stylometric Multivariate Analyses
Description: Supervised and unsupervised multivariate methods, supplemented by GUI and some visualizations, to perform various analyses in the field of computational stylistics, authorship attribution, etc. For further reference, see Eder et al. (2016), <https://journal.r-project.org/archive/2016/RJ-2016-007/index.html>. You are also encouraged to visit the Computational Stylistics Group's website <https://computationalstylistics.github.io/>, where a reasonable amount of information about the package and related projects are provided.
Author: Maciej Eder [aut, cre],
Jan Rybicki [aut],
Mike Kestemont [aut],
Steffen Pielstroem [aut]
Maintainer: Maciej Eder <maciejeder@gmail.com>
Diff between stylo versions 0.7.4 dated 2020-12-06 and 0.7.5 dated 2024-04-03
stylo-0.7.4/stylo/R/size.penalize.R |only stylo-0.7.4/stylo/man/size.penalize.Rd |only stylo-0.7.5/stylo/DESCRIPTION | 20 ++++++--- stylo-0.7.5/stylo/MD5 | 42 ++++++++++---------- stylo-0.7.5/stylo/NAMESPACE | 2 stylo-0.7.5/stylo/NEWS.md | 10 ++++ stylo-0.7.5/stylo/R/classify.R | 2 stylo-0.7.5/stylo/R/delete.stop.words.R | 2 stylo-0.7.5/stylo/R/dist.minmax.R | 2 stylo-0.7.5/stylo/R/load.corpus.and.parse.R | 2 stylo-0.7.5/stylo/R/make.frequency.list.R | 2 stylo-0.7.5/stylo/R/make.frequency.list.optimized.R | 4 - stylo-0.7.5/stylo/R/oppose.R | 4 - stylo-0.7.5/stylo/R/perform.delta.R | 2 stylo-0.7.5/stylo/R/perform.impostors.R | 2 stylo-0.7.5/stylo/R/performance.measures.R | 2 stylo-0.7.5/stylo/R/samplesize.penalize.R |only stylo-0.7.5/stylo/R/stylo.R | 8 +-- stylo-0.7.5/stylo/inst/CITATION | 26 +++--------- stylo-0.7.5/stylo/man/dist.delta.Rd | 10 +++- stylo-0.7.5/stylo/man/galbraith.Rd | 2 stylo-0.7.5/stylo/man/load.corpus.and.parse.Rd | 3 - stylo-0.7.5/stylo/man/plot.sample.size.Rd | 14 +++--- stylo-0.7.5/stylo/man/samplesize.penalize.Rd |only 24 files changed, 86 insertions(+), 75 deletions(-)
Title: Real-Time Disease Surveillance
Description: Supports modelling real-time case data to facilitate the real-time
surveillance of infectious diseases and other point phenomena. The package provides automated computational grid generation over
an area of interest with methods to map covariates between geographies, model fitting including spatially aggregated case counts,
and predictions and visualisation. Both Bayesian and maximum likelihood methods are provided. Log-Gaussian Cox Processes are described by
Diggle et al. (2013) <doi:10.1214/13-STS441> and we provide both the low-rank approximation for Gaussian processes
described by Solin and Särkkä (2020) <doi:10.1007/s11222-019-09886-w> and Riutort-Mayol et al (2020) <arXiv:2004.11408> and the
nearest neighbour Gaussian process described by Datta et al (2016) <doi:10.1080/01621459.2015.1044091>. 'cmdstanr' can be downloaded at <https://mc-stan.org/cmdstanr/>.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <s.i.watson@bham.ac.uk>
Diff between rts2 versions 0.7.2 dated 2024-03-08 and 0.7.4 dated 2024-04-03
DESCRIPTION | 8 MD5 | 49 +++- NAMESPACE | 19 + R/RcppExports.R | 64 ++---- R/griddata_class.R | 34 --- R/print_mcmlrts.R | 323 +++++++++++++++++++++++++++++-- build |only inst/include/rts/regionlinearpredictor.h | 11 - inst/include/rts/rtsmodel.h | 12 - inst/include/rts/rtsmodeloptim.h | 45 ++-- inst/include/rts/rtsregionmodel.h | 24 +- inst/include/rts/rtsregionmodeloptim.h | 77 ++++--- man/coef.rtsFit.Rd | 8 man/confint.rtsFit.Rd |only man/family.grid.Rd |only man/family.rtsFit.Rd |only man/fitted.rtsFit.Rd |only man/formula.grid.Rd |only man/formula.rtsFit.Rd |only man/logLik.rtsFit.Rd | 17 - man/predict.grid.Rd |only man/predict.rtsFit.Rd |only man/residuals.grid.Rd |only man/residuals.rtsFit.Rd |only man/rts2-package.Rd | 47 ++++ man/summary.grid.Rd |only man/vcov.grid.Rd |only man/vcov.rtsFit.Rd |only src/Makevars.win | 2 src/RcppExports.cpp | 221 +++++++++------------ src/model_module.cpp | 157 --------------- src/model_module2.cpp |only src/model_module_extension.cpp | 20 - 33 files changed, 655 insertions(+), 483 deletions(-)
Title: Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Description: Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).
Author: Dominic Gruen <dominic.gruen@gmail.com>
Maintainer: Dominic Gruen <dominic.gruen@gmail.com>
Diff between RaceID versions 0.3.4 dated 2024-01-08 and 0.3.5 dated 2024-04-03
DESCRIPTION | 8 +++--- MD5 | 10 ++++---- R/RaceID.R | 2 - inst/doc/RaceID.Rmd | 2 - inst/doc/RaceID.html | 60 +++++++++++++++++++++++++-------------------------- vignettes/RaceID.Rmd | 2 - 6 files changed, 42 insertions(+), 42 deletions(-)
Title: Simulation of Plot Errors and Phenotypes in Plant Breeding Field
Trials
Description: Simulates plot data in multi-environment field trials with one or more traits.
Its core function generates plot errors that capture spatial trend, random error (noise),
and extraneous variation, which are combined at a user-defined ratio.
Phenotypes can be generated by combining the plot errors with simulated genetic values that capture
genotype-by-environment (GxE) interaction using wrapper functions for the R package `AlphaSimR`.
Author: Christian Werner [aut, cre] ,
Daniel Tolhurst [aut]
Maintainer: Christian Werner <werner.christian@proton.me>
Diff between FieldSimR versions 1.2.0 dated 2023-11-03 and 1.3.0 dated 2024-04-03
FieldSimR-1.2.0/FieldSimR/R/random_corr_mat.R |only FieldSimR-1.2.0/FieldSimR/data/df_error_bivar.rda |only FieldSimR-1.2.0/FieldSimR/data/df_gv_unstr.rda |only FieldSimR-1.2.0/FieldSimR/inst/doc/spatial_error_demo.R |only FieldSimR-1.2.0/FieldSimR/inst/doc/spatial_error_demo.Rmd |only FieldSimR-1.2.0/FieldSimR/inst/doc/spatial_error_demo.html |only FieldSimR-1.2.0/FieldSimR/man/df_error_bivar.Rd |only FieldSimR-1.2.0/FieldSimR/man/df_gv_unstr.Rd |only FieldSimR-1.2.0/FieldSimR/vignettes/spatial_error_demo.Rmd |only FieldSimR-1.3.0/FieldSimR/DESCRIPTION | 46 FieldSimR-1.3.0/FieldSimR/MD5 | 83 FieldSimR-1.3.0/FieldSimR/NAMESPACE | 3 FieldSimR-1.3.0/FieldSimR/NEWS.md | 137 - FieldSimR-1.3.0/FieldSimR/R/compound_symmetry_gxe.R | 545 ++-- FieldSimR-1.3.0/FieldSimR/R/data.R | 78 FieldSimR-1.3.0/FieldSimR/R/field_trial_error.R | 1290 ++++------ FieldSimR-1.3.0/FieldSimR/R/make_phenotypes.R | 146 - FieldSimR-1.3.0/FieldSimR/R/multiplicative_gxe.R |only FieldSimR-1.3.0/FieldSimR/R/plot_effects.R | 703 +++-- FieldSimR-1.3.0/FieldSimR/R/random_correlation_matrix.R |only FieldSimR-1.3.0/FieldSimR/R/unstructured_gxe.R | 727 ++--- FieldSimR-1.3.0/FieldSimR/README.md | 36 FieldSimR-1.3.0/FieldSimR/build/vignette.rds |binary FieldSimR-1.3.0/FieldSimR/data/error_df_bivar.rda |only FieldSimR-1.3.0/FieldSimR/data/gv_df_unstr.rda |only FieldSimR-1.3.0/FieldSimR/inst/doc/compound_symmetry_GxE_demo.R | 68 FieldSimR-1.3.0/FieldSimR/inst/doc/compound_symmetry_GxE_demo.Rmd | 90 FieldSimR-1.3.0/FieldSimR/inst/doc/compound_symmetry_GxE_demo.html | 132 - FieldSimR-1.3.0/FieldSimR/inst/doc/spatial_variation_demo.R |only FieldSimR-1.3.0/FieldSimR/inst/doc/spatial_variation_demo.Rmd |only FieldSimR-1.3.0/FieldSimR/inst/doc/spatial_variation_demo.html |only FieldSimR-1.3.0/FieldSimR/inst/doc/unstructured_GxE_demo.R | 78 FieldSimR-1.3.0/FieldSimR/inst/doc/unstructured_GxE_demo.Rmd | 102 FieldSimR-1.3.0/FieldSimR/inst/doc/unstructured_GxE_demo.html | 147 - FieldSimR-1.3.0/FieldSimR/man/compsym_asr_input.Rd | 182 - FieldSimR-1.3.0/FieldSimR/man/compsym_asr_output.Rd | 115 FieldSimR-1.3.0/FieldSimR/man/error_df_bivar.Rd |only FieldSimR-1.3.0/FieldSimR/man/field_trial_error.Rd | 257 - FieldSimR-1.3.0/FieldSimR/man/gv_df_unstr.Rd |only FieldSimR-1.3.0/FieldSimR/man/make_phenotypes.Rd | 88 FieldSimR-1.3.0/FieldSimR/man/multi_asr_input.Rd |only FieldSimR-1.3.0/FieldSimR/man/multi_asr_output.Rd |only FieldSimR-1.3.0/FieldSimR/man/plot_effects.Rd | 35 FieldSimR-1.3.0/FieldSimR/man/plot_matrix.Rd |only FieldSimR-1.3.0/FieldSimR/man/qq_plot.Rd | 89 FieldSimR-1.3.0/FieldSimR/man/rand_cor_mat.Rd | 48 FieldSimR-1.3.0/FieldSimR/man/sample_variogram.Rd | 92 FieldSimR-1.3.0/FieldSimR/man/theoretical_variogram.Rd | 118 FieldSimR-1.3.0/FieldSimR/man/unstr_asr_input.Rd | 264 -- FieldSimR-1.3.0/FieldSimR/man/unstr_asr_output.Rd | 103 FieldSimR-1.3.0/FieldSimR/vignettes/compound_symmetry_GxE_demo.Rmd | 90 FieldSimR-1.3.0/FieldSimR/vignettes/spatial_error_demo.R |only FieldSimR-1.3.0/FieldSimR/vignettes/spatial_variation_demo.Rmd |only FieldSimR-1.3.0/FieldSimR/vignettes/unstructured_GxE_demo.Rmd | 102 54 files changed, 3100 insertions(+), 2894 deletions(-)
Title: Occurrence Data Cleaning
Description: Flags and checks occurrence data that are in Darwin Core
format. The package includes generic functions and data as well as
some that are specific to bees. This package is meant to build upon
and be complimentary to other excellent occurrence cleaning packages,
including 'bdc' and 'CoordinateCleaner'. This package uses datasets
from several sources and particularly from the Discover Life Website,
created by Ascher and Pickering (2020). For further information,
please see the original publication and package website. Publication
- Dorey et al. (2023) <doi:10.1101/2023.06.30.547152> and package
website - Dorey et al. (2023) <https://github.com/jbdorey/BeeBDC>.
Author: James B. Dorey [aut, cre, cph]
,
Robert L. O'Reilly [aut] ,
Silas Bossert [aut] ,
Erica E. Fischer [aut]
Maintainer: James B. Dorey <jbdorey@me.com>
Diff between BeeBDC versions 1.1.0 dated 2024-03-20 and 1.1.1 dated 2024-04-03
BeeBDC-1.1.0/BeeBDC/R/harmoniseR.R |only BeeBDC-1.1.0/BeeBDC/tests/testthat/test-harmoniseR.R |only BeeBDC-1.1.1/BeeBDC/DESCRIPTION | 6 - BeeBDC-1.1.1/BeeBDC/MD5 | 66 ++++++++-------- BeeBDC-1.1.1/BeeBDC/NEWS.md | 8 + BeeBDC-1.1.1/BeeBDC/R/ColTypeR.R | 34 ++++---- BeeBDC-1.1.1/BeeBDC/R/HarmoniseR.R |only BeeBDC-1.1.1/BeeBDC/R/atlasDownloader.R | 2 BeeBDC-1.1.1/BeeBDC/R/beesChecklist.R | 4 BeeBDC-1.1.1/BeeBDC/R/beesTaxonomy.R | 6 - BeeBDC-1.1.1/BeeBDC/R/countryOutliers.R | 4 BeeBDC-1.1.1/BeeBDC/R/flagLicense.R | 6 - BeeBDC-1.1.1/BeeBDC/R/formattedCombiner.R | 6 - BeeBDC-1.1.1/BeeBDC/R/jbd_coordCountryInconsistent.R | 4 BeeBDC-1.1.1/BeeBDC/R/jbd_coordinates_transposed.R | 2 BeeBDC-1.1.1/BeeBDC/R/jbd_correct_coordinates.R | 6 - BeeBDC-1.1.1/BeeBDC/R/summaryMaps.R | 8 - BeeBDC-1.1.1/BeeBDC/R/taxoDuplicator.R | 4 BeeBDC-1.1.1/BeeBDC/R/toyData_bees3sp.R | 4 BeeBDC-1.1.1/BeeBDC/R/toyData_beesFlagged.R | 4 BeeBDC-1.1.1/BeeBDC/R/toyData_beesRaw.R | 4 BeeBDC-1.1.1/BeeBDC/README.md | 40 +++++---- BeeBDC-1.1.1/BeeBDC/inst/BeeBDC_basicWorkflow.R | 12 +- BeeBDC-1.1.1/BeeBDC/inst/BeeBDC_fullWorkflow.R | 30 +++---- BeeBDC-1.1.1/BeeBDC/inst/CITATION | 10 +- BeeBDC-1.1.1/BeeBDC/inst/doc/BeeBDC_main.html | 18 ++-- BeeBDC-1.1.1/BeeBDC/man/atlasDownloader.Rd | 2 BeeBDC-1.1.1/BeeBDC/man/bees3sp.Rd | 4 BeeBDC-1.1.1/BeeBDC/man/beesChecklist.Rd | 4 BeeBDC-1.1.1/BeeBDC/man/beesFlagged.Rd | 4 BeeBDC-1.1.1/BeeBDC/man/beesRaw.Rd | 4 BeeBDC-1.1.1/BeeBDC/man/beesTaxonomy.Rd | 6 - BeeBDC-1.1.1/BeeBDC/man/harmoniseR.Rd | 2 BeeBDC-1.1.1/BeeBDC/man/jbd_coordCountryInconsistent.Rd | 4 BeeBDC-1.1.1/BeeBDC/man/jbd_coordinates_transposed.Rd | 2 BeeBDC-1.1.1/BeeBDC/tests/testthat/test-HarmoniseR.R |only 36 files changed, 166 insertions(+), 154 deletions(-)
Title: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'
Description: Implements spatial and spatiotemporal GLMMs (Generalized Linear
Mixed Effect Models) using 'TMB', 'fmesher', and the SPDE (Stochastic Partial
Differential Equation) Gaussian Markov random field approximation to
Gaussian random fields. One common application is for spatially explicit
species distribution models (SDMs).
See Anderson et al. (2022) <doi:10.1101/2022.03.24.485545>.
Author: Sean C. Anderson [aut, cre] ,
Eric J. Ward [aut] ,
Philina A. English [aut] ,
Lewis A. K. Barnett [aut] ,
James T. Thorson [aut, cph] ,
Joe Watson [ctb] ,
Julia Indivero [ctb] ,
Jillian C. Dunic [ctb] ,
Cole C. Monnahan [ctb, cph] ,
Mollie Brooks [ct [...truncated...]
Maintainer: Sean C. Anderson <sean@seananderson.ca>
Diff between sdmTMB versions 0.4.3 dated 2024-02-28 and 0.5.0 dated 2024-04-03
sdmTMB-0.4.3/sdmTMB/tests/testthat/test-7-visreg.R |only sdmTMB-0.5.0/sdmTMB/DESCRIPTION | 13 sdmTMB-0.5.0/sdmTMB/MD5 | 143 ++--- sdmTMB-0.5.0/sdmTMB/NAMESPACE | 2 sdmTMB-0.5.0/sdmTMB/NEWS.md | 59 ++ sdmTMB-0.5.0/sdmTMB/R/check.R | 27 - sdmTMB-0.5.0/sdmTMB/R/cross-val.R | 34 - sdmTMB-0.5.0/sdmTMB/R/deprecated.R | 24 sdmTMB-0.5.0/sdmTMB/R/dharma.R |only sdmTMB-0.5.0/sdmTMB/R/enum.R | 3 sdmTMB-0.5.0/sdmTMB/R/families.R | 71 ++ sdmTMB-0.5.0/sdmTMB/R/fit.R | 33 + sdmTMB-0.5.0/sdmTMB/R/index.R | 23 sdmTMB-0.5.0/sdmTMB/R/methods.R | 7 sdmTMB-0.5.0/sdmTMB/R/predict.R | 18 sdmTMB-0.5.0/sdmTMB/R/print.R | 18 sdmTMB-0.5.0/sdmTMB/R/priors.R | 2 sdmTMB-0.5.0/sdmTMB/R/residuals.R | 244 ++++++---- sdmTMB-0.5.0/sdmTMB/R/tidy.R | 2 sdmTMB-0.5.0/sdmTMB/R/tmb-sim.R | 53 +- sdmTMB-0.5.0/sdmTMB/R/utils.R | 75 +++ sdmTMB-0.5.0/sdmTMB/build/partial.rdb |binary sdmTMB-0.5.0/sdmTMB/build/vignette.rds |binary sdmTMB-0.5.0/sdmTMB/inst/doc/model-description.html | 2 sdmTMB-0.5.0/sdmTMB/man/dharma_residuals.Rd | 122 ++++- sdmTMB-0.5.0/sdmTMB/man/families.Rd | 37 + sdmTMB-0.5.0/sdmTMB/man/priors.Rd | 2 sdmTMB-0.5.0/sdmTMB/man/residuals.sdmTMB.Rd | 166 ++++-- sdmTMB-0.5.0/sdmTMB/man/sdmTMB.Rd | 6 sdmTMB-0.5.0/sdmTMB/man/sdmTMB_cv.Rd | 17 sdmTMB-0.5.0/sdmTMB/man/simulate.sdmTMB.Rd | 20 sdmTMB-0.5.0/sdmTMB/src/sdmTMB.cpp | 71 +- sdmTMB-0.5.0/sdmTMB/src/utils.h | 55 ++ sdmTMB-0.5.0/sdmTMB/tests/testthat/Rplots.pdf |binary sdmTMB-0.5.0/sdmTMB/tests/testthat/test-1-fit-basic.R | 7 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-1-visreg.R |only sdmTMB-0.5.0/sdmTMB/tests/testthat/test-2-fit-less-basic.R | 36 + sdmTMB-0.5.0/sdmTMB/tests/testthat/test-2-print-anisotropy.R | 6 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-3-families.R | 121 ++++ sdmTMB-0.5.0/sdmTMB/tests/testthat/test-3-spatial-varying.R | 4 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-4-index-calculation.R | 2 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-5-residuals.R | 114 +++- sdmTMB-0.5.0/sdmTMB/tests/testthat/test-6-tmb-simulation.R | 25 - sdmTMB-0.5.0/sdmTMB/tests/testthat/test-8-delta2.R | 7 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-9-mvn-simulation.R | 7 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-aniso-plots.R | 1 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-cross-validation.R | 6 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-delta-population-predictions.R | 1 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-delta.R | 68 ++ sdmTMB-0.5.0/sdmTMB/tests/testthat/test-deprecated-args.R | 3 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-dharma.R | 35 - sdmTMB-0.5.0/sdmTMB/tests/testthat/test-extra-optimization.R | 1 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-extra-time.R | 60 ++ sdmTMB-0.5.0/sdmTMB/tests/testthat/test-factor-levels.R | 3 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-forecasting.R | 1 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-ggeffect.R | 2 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-index.R | 116 ++++ sdmTMB-0.5.0/sdmTMB/tests/testthat/test-link-prediction.R | 2 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-links.R | 1 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-mcmc-resid.R | 1 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-methods.R | 2 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-mix.R | 5 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-nonstationary.R | 12 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-offset.R | 3 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-parameter-bounds.R | 1 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-priors.R | 5 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-reml.R | 2 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-sdmTMB-simulate.R | 1 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-smooths.R | 19 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-threshold-models.R | 3 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-time-varying.R | 2 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-tmb-simulation.R | 22 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-utm-conversions.R | 1 sdmTMB-0.5.0/sdmTMB/tests/testthat/test-varying-epsilon.R | 2 74 files changed, 1477 insertions(+), 582 deletions(-)
More information about CoreMicrobiomeR at CRAN
Permanent link
Title: Behavior-Driven Development for R
Description: Write executable specifications in a natural language that describes how your code should behave.
Write specifications in feature files using 'Gherkin' language and execute them using functions implemented in R.
Use them as an extension to your 'testthat' tests to provide a high level description of how your code works.
Author: Jakub Sobolewski [aut, cre]
Maintainer: Jakub Sobolewski <jakupsob@gmail.com>
Diff between cucumber versions 1.0.0 dated 2024-03-14 and 1.0.1 dated 2024-04-03
cucumber-1.0.0/cucumber/inst/doc/what-is-bdd.R |only cucumber-1.0.0/cucumber/inst/doc/what-is-bdd.Rmd |only cucumber-1.0.0/cucumber/inst/doc/what-is-bdd.html |only cucumber-1.0.0/cucumber/inst/examples/with_testthat_failure/tests/testthat/testthat-problems.rds |only cucumber-1.0.0/cucumber/vignettes/what-is-bdd.Rmd |only cucumber-1.0.1/cucumber/DESCRIPTION | 6 cucumber-1.0.1/cucumber/MD5 | 65 +-- cucumber-1.0.1/cucumber/NAMESPACE | 2 cucumber-1.0.1/cucumber/NEWS.md | 9 cucumber-1.0.1/cucumber/R/parameter.R | 36 + cucumber-1.0.1/cucumber/R/parse_token.R | 18 cucumber-1.0.1/cucumber/R/step.R | 3 cucumber-1.0.1/cucumber/README.md | 23 - cucumber-1.0.1/cucumber/build/vignette.rds |binary cucumber-1.0.1/cucumber/inst/examples/box_support/tests/testthat/steps/addition.R | 2 cucumber-1.0.1/cucumber/inst/examples/comments/tests/testthat/steps/steps.R | 2 cucumber-1.0.1/cucumber/inst/examples/custom_test_dir/tests/acceptance/steps/steps.R | 2 cucumber-1.0.1/cucumber/inst/examples/docstring/tests/testthat/steps/steps.R | 2 cucumber-1.0.1/cucumber/inst/examples/multiple_features/tests/testthat/steps/guess_the_word.R | 2 cucumber-1.0.1/cucumber/inst/examples/one_feature/tests/testthat/steps/steps.R | 2 cucumber-1.0.1/cucumber/inst/examples/shinytest2/tests/testthat/formula_display.feature | 4 cucumber-1.0.1/cucumber/inst/examples/shinytest2/tests/testthat/steps/steps.R | 2 cucumber-1.0.1/cucumber/inst/examples/snapshot_test |only cucumber-1.0.1/cucumber/inst/examples/table/tests/testthat/steps/steps.R | 2 cucumber-1.0.1/cucumber/inst/examples/with_testthat_failure/tests/testthat/steps/guess_the_word.R | 2 cucumber-1.0.1/cucumber/inst/examples/with_testthat_success/tests/testthat/steps/guess_the_word.R | 2 cucumber-1.0.1/cucumber/man/define_parameter_type.Rd | 22 - cucumber-1.0.1/cucumber/man/step.Rd | 2 cucumber-1.0.1/cucumber/tests/testthat/_snaps/examples.md | 11 cucumber-1.0.1/cucumber/tests/testthat/test-examples.R | 4 cucumber-1.0.1/cucumber/tests/testthat/test-expression.R | 4 cucumber-1.0.1/cucumber/tests/testthat/test-parameter.R | 70 ++- cucumber-1.0.1/cucumber/tests/testthat/test-parse_token.R | 214 +++++++--- cucumber-1.0.1/cucumber/tests/testthat/test-run.R | 8 cucumber-1.0.1/cucumber/tests/testthat/test-step.R | 2 35 files changed, 390 insertions(+), 133 deletions(-)
Title: Air Quality Evaluation
Description: Developed for use by those tasked with the routine detection, characterisation
and quantification of discrete changes in air quality time-series, such as
identifying the impacts of air quality policy interventions. The main functions use
signal isolation then break-point/segment (BP/S) methods based on 'strucchange' and
'segmented' methods to detect and quantify change events (Ropkins & Tate, 2021,
<doi:10.1016/j.scitotenv.2020.142374>).
Author: Karl Ropkins [aut, cre] ,
Anthony Walker [aut] ,
James Tate [aut]
Maintainer: Karl Ropkins <k.ropkins@its.leeds.ac.uk>
Diff between AQEval versions 0.5.2 dated 2023-02-23 and 0.5.7 dated 2024-04-03
DESCRIPTION | 31 +++---- MD5 | 18 ++-- NEWS.md | 10 +- R/aqe.misc.R | 8 + R/find.breaks.R | 1 R/isolate.signal.R | 215 ++++++++++++++++++++++++++++---------------------- R/other.aq.models.R | 5 - R/quantify.breaks.R | 6 + build/partial.rdb |binary man/isolate.signal.Rd | 27 +++--- 10 files changed, 184 insertions(+), 137 deletions(-)
Title: Topological k-NN Classifier Based on Self-Organising Maps
Description: A topological version of k-NN: An abstract model is build
as 2-dimensional self-organising map. Samples of unknown
class are predicted by mapping them on the SOM and analysing
class membership of neurons in the neighbourhood.
Author: Andreas Dominik
Maintainer: Andreas Dominik <andreas.dominik@mni.thm.de>
Diff between som.nn versions 1.1.0 dated 2017-02-24 and 1.4.4 dated 2024-04-03
som.nn-1.1.0/som.nn/man/plot.predictions.Rd |only som.nn-1.4.4/som.nn/DESCRIPTION | 9 - som.nn-1.4.4/som.nn/MD5 | 103 +++++++++------- som.nn-1.4.4/som.nn/NAMESPACE | 7 + som.nn-1.4.4/som.nn/R/SOMnn.R | 35 +++-- som.nn-1.4.4/som.nn/R/plot.SOMnn.R | 6 som.nn-1.4.4/som.nn/R/predict.SOMnn.R | 42 ++++++ som.nn-1.4.4/som.nn/R/som.nn.accuracy.R |only som.nn-1.4.4/som.nn/R/som.nn.continue.R | 7 - som.nn-1.4.4/som.nn/R/som.nn.do.train.R | 130 ++++++--------------- som.nn-1.4.4/som.nn/R/som.nn.multitrain.R |only som.nn-1.4.4/som.nn/R/som.nn.run.kernel.R | 8 - som.nn-1.4.4/som.nn/R/som.nn.set.R | 42 +----- som.nn-1.4.4/som.nn/R/som.nn.som.gaussian.R | 17 +- som.nn-1.4.4/som.nn/R/som.nn.som.internal.R | 18 ++ som.nn-1.4.4/som.nn/R/som.nn.train.R | 11 + som.nn-1.4.4/som.nn/R/som.nn.util.R | 32 +++-- som.nn-1.4.4/som.nn/R/som.nn.validate.R | 48 ++++--- som.nn-1.4.4/som.nn/R/som.nn.visual.R | 24 +++ som.nn-1.4.4/som.nn/man/SOMnn-class.Rd | 9 - som.nn-1.4.4/som.nn/man/dist.fun.bubble.Rd | 4 som.nn-1.4.4/som.nn/man/dist.fun.inverse.Rd | 4 som.nn-1.4.4/som.nn/man/dist.fun.linear.Rd | 4 som.nn-1.4.4/som.nn/man/dist.fun.tricubic.Rd | 4 som.nn-1.4.4/som.nn/man/dist.torus.Rd | 6 som.nn-1.4.4/som.nn/man/enrich.dirty.Rd |only som.nn-1.4.4/som.nn/man/examples |only som.nn-1.4.4/som.nn/man/get.border.neurons.Rd |only som.nn-1.4.4/som.nn/man/hexbinpie.Rd | 18 ++ som.nn-1.4.4/som.nn/man/initialize-methods.Rd | 41 +++++- som.nn-1.4.4/som.nn/man/make.codes.grid.Rd | 3 som.nn-1.4.4/som.nn/man/makehexbinplot.Rd | 19 ++- som.nn-1.4.4/som.nn/man/norm.linear.Rd | 7 - som.nn-1.4.4/som.nn/man/norm.softmax.Rd | 3 som.nn-1.4.4/som.nn/man/plot-methods.Rd | 53 +++++--- som.nn-1.4.4/som.nn/man/plot_predictions.Rd |only som.nn-1.4.4/som.nn/man/predict-methods.Rd | 63 +--------- som.nn-1.4.4/som.nn/man/round.probabilities.Rd | 7 - som.nn-1.4.4/som.nn/man/som.nn-package.Rd | 29 ++-- som.nn-1.4.4/som.nn/man/som.nn.accuracy.Rd |only som.nn-1.4.4/som.nn/man/som.nn.all.accuracy.Rd |only som.nn-1.4.4/som.nn/man/som.nn.confusion.Rd |only som.nn-1.4.4/som.nn/man/som.nn.continue.Rd | 59 +++++---- som.nn-1.4.4/som.nn/man/som.nn.do.train.Rd | 40 +++++- som.nn-1.4.4/som.nn/man/som.nn.export.kohonen.Rd | 8 - som.nn-1.4.4/som.nn/man/som.nn.export.som.Rd | 8 - som.nn-1.4.4/som.nn/man/som.nn.max.row.Rd | 11 + som.nn-1.4.4/som.nn/man/som.nn.multitrain.Rd |only som.nn-1.4.4/som.nn/man/som.nn.round.votes.Rd | 3 som.nn-1.4.4/som.nn/man/som.nn.run.kernel.Rd | 21 ++- som.nn-1.4.4/som.nn/man/som.nn.set.Rd | 71 ++--------- som.nn-1.4.4/som.nn/man/som.nn.som.experimental.Rd | 15 +- som.nn-1.4.4/som.nn/man/som.nn.som.gaussian.Rd | 15 +- som.nn-1.4.4/som.nn/man/som.nn.som.internal.Rd | 19 ++- som.nn-1.4.4/som.nn/man/som.nn.train.Rd | 83 ++++++++----- som.nn-1.4.4/som.nn/man/som.nn.validate.Rd | 25 ++-- som.nn-1.4.4/som.nn/man/som.nn.visual.Rd | 14 +- som.nn-1.4.4/som.nn/man/som.nn.visual.one.Rd | 3 58 files changed, 649 insertions(+), 559 deletions(-)
Title: Phylogenetic Analysis with Discrete Character Data
Description: Reconstruct phylogenetic trees from discrete data.
Inapplicable character states are handled using the algorithm of Brazeau,
Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083> with the "Morphy"
library, under equal or implied step weights.
Contains a "shiny" user interface for interactive tree search and exploration
of results, including character visualization, rogue taxon detection,
tree space mapping, and cluster consensus trees (Smith 2022a, b)
<doi:10.1093/sysbio/syab099>, <doi:10.1093/sysbio/syab100>.
Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>,
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>
and custom optimality criteria are implemented.
Author: Martin R. Smith [aut, cre, cph]
,
Martin Brazeau [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeSearch versions 1.4.0 dated 2023-08-26 and 1.5.0 dated 2024-04-03
TreeSearch-1.4.0/TreeSearch/R/ci-ri.R |only TreeSearch-1.5.0/TreeSearch/DESCRIPTION | 8 TreeSearch-1.5.0/TreeSearch/MD5 | 99 ++--- TreeSearch-1.5.0/TreeSearch/NAMESPACE | 4 TreeSearch-1.5.0/TreeSearch/NEWS.md | 7 TreeSearch-1.5.0/TreeSearch/R/AdditionTree.R | 2 TreeSearch-1.5.0/TreeSearch/R/ClusterStrings.R | 2 TreeSearch-1.5.0/TreeSearch/R/Concordance.R | 10 TreeSearch-1.5.0/TreeSearch/R/Consistency.R |only TreeSearch-1.5.0/TreeSearch/R/CustomSearch.R | 6 TreeSearch-1.5.0/TreeSearch/R/Jackknife.R | 8 TreeSearch-1.5.0/TreeSearch/R/MaximizeParsimony.R | 36 - TreeSearch-1.5.0/TreeSearch/R/NNI.R | 26 - TreeSearch-1.5.0/TreeSearch/R/PlotCharacter.R | 12 TreeSearch-1.5.0/TreeSearch/R/Ratchet.R | 16 TreeSearch-1.5.0/TreeSearch/R/SPR.R | 22 - TreeSearch-1.5.0/TreeSearch/R/Sectorial.R | 20 - TreeSearch-1.5.0/TreeSearch/R/SuccessiveApproximations.R | 18 TreeSearch-1.5.0/TreeSearch/R/TBR.R | 14 TreeSearch-1.5.0/TreeSearch/R/TaxonInfluence.R | 2 TreeSearch-1.5.0/TreeSearch/R/data_manipulation.R | 8 TreeSearch-1.5.0/TreeSearch/R/length_range.R | 184 +++++++++- TreeSearch-1.5.0/TreeSearch/R/mpl_morphy_objects.R | 19 - TreeSearch-1.5.0/TreeSearch/R/mpl_visualise.R | 18 TreeSearch-1.5.0/TreeSearch/R/pp_info_extra_step.r | 2 TreeSearch-1.5.0/TreeSearch/R/tree_length.R | 48 +- TreeSearch-1.5.0/TreeSearch/R/tree_rearrangement.R | 2 TreeSearch-1.5.0/TreeSearch/build/partial.rdb |binary TreeSearch-1.5.0/TreeSearch/build/vignette.rds |binary TreeSearch-1.5.0/TreeSearch/inst/CITATION | 6 TreeSearch-1.5.0/TreeSearch/inst/Parsimony/app.R | 18 TreeSearch-1.5.0/TreeSearch/inst/REFERENCES.bib | 23 + TreeSearch-1.5.0/TreeSearch/inst/doc/custom.html | 12 TreeSearch-1.5.0/TreeSearch/inst/doc/getting-started.html | 4 TreeSearch-1.5.0/TreeSearch/inst/doc/profile-scores.html | 4 TreeSearch-1.5.0/TreeSearch/inst/doc/profile.html | 4 TreeSearch-1.5.0/TreeSearch/inst/doc/tree-search.R | 2 TreeSearch-1.5.0/TreeSearch/inst/doc/tree-search.html | 4 TreeSearch-1.5.0/TreeSearch/inst/doc/tree-space.html | 4 TreeSearch-1.5.0/TreeSearch/man/Consistency.Rd | 44 ++ TreeSearch-1.5.0/TreeSearch/man/DoubleNNI.Rd | 2 TreeSearch-1.5.0/TreeSearch/man/MaximizeParsimony.Rd | 4 TreeSearch-1.5.0/TreeSearch/man/MinimumLength.Rd | 23 + TreeSearch-1.5.0/TreeSearch/man/Ratchet.Rd | 2 TreeSearch-1.5.0/TreeSearch/tests/testthat/_snaps/PlotCharacter/plotchar-11iiqqqqii11.svg | 176 ++++----- TreeSearch-1.5.0/TreeSearch/tests/testthat/test-Consistency.R |only TreeSearch-1.5.0/TreeSearch/tests/testthat/test-CustomSearch.R | 2 TreeSearch-1.5.0/TreeSearch/tests/testthat/test-PlotCharacter.R | 46 +- TreeSearch-1.5.0/TreeSearch/tests/testthat/test-TaxonInfluence.R | 1 TreeSearch-1.5.0/TreeSearch/tests/testthat/test-length_range.R | 80 ++++ TreeSearch-1.5.0/TreeSearch/tests/testthat/test-tree_length.R | 12 TreeSearch-1.5.0/TreeSearch/tests/testthat/test-zzz-tree-rearrange.R | 10 52 files changed, 696 insertions(+), 380 deletions(-)
Title: Proportional Apportionment
Description: Calculate seat apportionment for legislative bodies with
various methods. The algorithms include divisor or highest averages methods
(e.g. Jefferson, Webster or Adams), largest remainder methods and
biproportional apportionment.
Gaffke, N. & Pukelsheim, F. (2008) <doi:10.1016/j.mathsocsci.2008.01.004>
Oelbermann, K. F. (2016) <doi:10.1016/j.mathsocsci.2016.02.003>.
Author: Flavio Poletti [aut, cre, cph]
Maintainer: Flavio Poletti <flavio.poletti@hotmail.ch>
Diff between proporz versions 1.4.0 dated 2024-03-04 and 1.5.0 dated 2024-04-03
proporz-1.4.0/proporz/tests/testthat/test-zug2018.R |only proporz-1.5.0/proporz/DESCRIPTION | 6 proporz-1.5.0/proporz/MD5 | 108 proporz-1.5.0/proporz/NAMESPACE | 54 proporz-1.5.0/proporz/NEWS.md | 90 proporz-1.5.0/proporz/R/S3.R | 43 proporz-1.5.0/proporz/R/biproportional-check.R | 234 proporz-1.5.0/proporz/R/biproportional-divisors.R |only proporz-1.5.0/proporz/R/biproportional-wto.R |only proporz-1.5.0/proporz/R/biproportional.R | 1038 ++- proporz-1.5.0/proporz/R/data.R | 116 proporz-1.5.0/proporz/R/divisor-check.R | 95 proporz-1.5.0/proporz/R/divisor.R | 289 - proporz-1.5.0/proporz/R/proporz.R | 196 proporz-1.5.0/proporz/R/quorum.R | 430 - proporz-1.5.0/proporz/R/quota.R | 165 proporz-1.5.0/proporz/R/round.R | 21 proporz-1.5.0/proporz/R/shinyapp.R | 570 +- proporz-1.5.0/proporz/R/sysdata.rda |binary proporz-1.5.0/proporz/R/utils.R | 218 proporz-1.5.0/proporz/README.md | 391 - proporz-1.5.0/proporz/build/vignette.rds |binary proporz-1.5.0/proporz/inst/doc/apportionment_scenarios.R | 238 proporz-1.5.0/proporz/inst/doc/apportionment_scenarios.Rmd | 528 - proporz-1.5.0/proporz/inst/doc/apportionment_scenarios.html | 2768 +++++----- proporz-1.5.0/proporz/man/biproporz.Rd | 190 proporz-1.5.0/proporz/man/ceil_at.Rd | 57 proporz-1.5.0/proporz/man/divide_votes_matrix.Rd |only proporz-1.5.0/proporz/man/divisor_methods.Rd | 138 proporz-1.5.0/proporz/man/find_divisor.Rd |only proporz-1.5.0/proporz/man/find_matrix_divisors.Rd |only proporz-1.5.0/proporz/man/finland2019.Rd | 62 proporz-1.5.0/proporz/man/get_divisors.Rd | 50 proporz-1.5.0/proporz/man/highest_averages_method.Rd | 74 proporz-1.5.0/proporz/man/largest_remainder_method.Rd | 84 proporz-1.5.0/proporz/man/lower_apportionment.Rd | 148 proporz-1.5.0/proporz/man/pivot_to_matrix.Rd | 108 proporz-1.5.0/proporz/man/proporz.Rd | 104 proporz-1.5.0/proporz/man/proporz_methods.Rd | 40 proporz-1.5.0/proporz/man/pukelsheim.Rd | 181 proporz-1.5.0/proporz/man/quorum_functions.Rd | 118 proporz-1.5.0/proporz/man/reached_quorum_any_district.Rd | 60 proporz-1.5.0/proporz/man/reached_quorum_total.Rd | 58 proporz-1.5.0/proporz/man/reached_quorums.Rd | 60 proporz-1.5.0/proporz/man/run_app.Rd | 56 proporz-1.5.0/proporz/man/upper_apportionment.Rd | 119 proporz-1.5.0/proporz/man/uri2020.Rd | 54 proporz-1.5.0/proporz/man/weight_list_votes.Rd | 52 proporz-1.5.0/proporz/man/zug2018.Rd | 42 proporz-1.5.0/proporz/tests/testthat.R | 8 proporz-1.5.0/proporz/tests/testthat/test-biproportional-data.R |only proporz-1.5.0/proporz/tests/testthat/test-biproportional-wto.R |only proporz-1.5.0/proporz/tests/testthat/test-biproportional.R | 851 +-- proporz-1.5.0/proporz/tests/testthat/test-divisor.R | 178 proporz-1.5.0/proporz/tests/testthat/test-proporz.R | 259 proporz-1.5.0/proporz/tests/testthat/test-quota.R | 86 proporz-1.5.0/proporz/tests/testthat/test-round.R | 184 proporz-1.5.0/proporz/tests/testthat/test-utils.R | 110 proporz-1.5.0/proporz/vignettes/apportionment_scenarios.Rmd | 528 - 59 files changed, 5974 insertions(+), 5683 deletions(-)
Title: "Risk Model Regression and Analysis with Complex Non-Linear
Models"
Description: Performs survival analysis using general non-linear models. Risk models can be the sum or product of terms. Each term is the product of exponential/linear functions of covariates. Additionally sub-terms can be defined as a sum of exponential, linear threshold, and step functions. Cox Proportional hazards <https://en.wikipedia.org/wiki/Proportional_hazards_model>, Poisson <https://en.wikipedia.org/wiki/Poisson_regression>, and Fine-Grey competing risks <https://www.publichealth.columbia.edu/research/population-health-methods/competing-risk-analysis> regression are supported. This work was sponsored by NASA Grant 80NSSC19M0161 through a subcontract from the National Council on Radiation Protection and Measurements (NCRP). The computing for this project was performed on the Beocat Research Cluster at Kansas State University, which is funded in part by NSF grants CNS-1006860, EPS-1006860, EPS-0919443, ACI-1440548, CHE-1726332, and NIH P20GM113109.
Author: Eric Giunta [aut, cre] ,
Amir Bahadori [ctb] ,
Dan Andresen [ctb],
Linda Walsh [ctb] ,
Benjamin French [ctb] ,
Lawrence Dauer [ctb],
John Boice Jr [ctb] ,
Kansas State University [cph],
NASA [fnd],
NCRP [fnd],
NRC [fnd]
Maintainer: Eric Giunta <egiunta@ksu.edu>
Diff between Colossus versions 1.0.1 dated 2024-02-26 and 1.1.0 dated 2024-04-03
Colossus-1.0.1/Colossus/configure.win |only Colossus-1.1.0/Colossus/DESCRIPTION | 15 - Colossus-1.1.0/Colossus/MD5 | 47 ++-- Colossus-1.1.0/Colossus/NAMESPACE | 4 Colossus-1.1.0/Colossus/NEWS.md | 25 ++ Colossus-1.1.0/Colossus/R/Cox_Regression.R | 6 Colossus-1.1.0/Colossus/R/PlotTypes.R | 1 Colossus-1.1.0/Colossus/R/Poisson_Regression.R | 5 Colossus-1.1.0/Colossus/R/RcppExports.R | 10 Colossus-1.1.0/Colossus/R/Utility.R | 146 ++++++++++++- Colossus-1.1.0/Colossus/R/utils-roxygen.R | 3 Colossus-1.1.0/Colossus/README.md | 28 +- Colossus-1.1.0/Colossus/configure | 4 Colossus-1.1.0/Colossus/inst/WORDLIST | 9 Colossus-1.1.0/Colossus/inst/doc/starting-description.html | 14 - Colossus-1.1.0/Colossus/man/OMP_Check.Rd |only Colossus-1.1.0/Colossus/man/Rcomp_version.Rd |only Colossus-1.1.0/Colossus/man/Rcpp_version.Rd |only Colossus-1.1.0/Colossus/man/System_Version.Rd |only Colossus-1.1.0/Colossus/man/gcc_version.Rd |only Colossus-1.1.0/Colossus/man/get_os.Rd |only Colossus-1.1.0/Colossus/src/Makevars.in | 4 Colossus-1.1.0/Colossus/src/R_Interface.cpp | 17 + Colossus-1.1.0/Colossus/src/R_Interface.h | 2 Colossus-1.1.0/Colossus/src/RcppExports.cpp | 11 Colossus-1.1.0/Colossus/tests/testthat/test-CPP_SPECIAL.R | 2 Colossus-1.1.0/Colossus/tests/testthat/test-Utility.R | 44 +++ Colossus-1.1.0/Colossus/tools/config/configure.R | 58 +---- 28 files changed, 354 insertions(+), 101 deletions(-)
Title: Scatter Pie Plot
Description: Creates scatterpie plots, especially useful for plotting pies on a map.
Author: Guangchuang Yu [aut, cre] ,
Shuangbin Xu [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between scatterpie versions 0.2.1 dated 2023-06-07 and 0.2.2 dated 2024-04-03
DESCRIPTION | 10 ++--- MD5 | 18 +++++----- NAMESPACE | 2 + NEWS.md | 4 ++ R/geom_scatterpie.R | 78 ++++++++++++++++++++++++++++++++++++++-------- R/scatterpie-package.R |only R/utilities.R | 19 +++++++++++ build/vignette.rds |binary inst/doc/scatterpie.html | 46 +++++++++++++-------------- man/geom_scatterpie.Rd | 27 +++++++++++++++ man/scatterpie-package.Rd |only 11 files changed, 154 insertions(+), 50 deletions(-)
Title: Use Open Data from the Czech Statistical Office in R
Description: Get programmatic access to the open data provided by the
Czech Statistical Office (CZSO, <https://czso.cz>).
Author: Petr Bouchal [aut, cre] ,
Jindra Lacko [ctb]
Maintainer: Petr Bouchal <pbouchal@gmail.com>
Diff between czso versions 0.3.10 dated 2022-09-01 and 0.3.12 dated 2024-04-03
DESCRIPTION | 8 +- MD5 | 17 ++--- NAMESPACE | 1 NEWS.md | 10 +++ R/core.R | 17 ++--- R/czso-package.R | 1 README.md | 148 +++++++++++++++++++++++----------------------- build/czso.pdf |binary build/stage23.rdb |only man/czso_get_catalogue.Rd | 2 10 files changed, 109 insertions(+), 95 deletions(-)
Title: Import and Export 'Familias' Files
Description: Tools for exchanging pedigree data between the 'pedsuite'
packages and the 'Familias' software for forensic kinship computations
(Egeland et al. (2000) <doi:10.1016/s0379-0738(00)00147-x>). These
functions were split out from the 'forrel' package to streamline
maintenance and provide a lightweight alternative for packages otherwise
independent of 'forrel'.
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedFamilias versions 0.2.0 dated 2023-11-05 and 0.2.2 dated 2024-04-03
DESCRIPTION | 8 - MD5 | 14 +- NEWS.md | 16 ++ R/readFam.R | 31 +++-- README.md | 42 ++++--- build/partial.rdb |binary man/readFam.Rd | 220 ++++++++++++++++++------------------- tests/testthat/test-familias2ped.R | 3 8 files changed, 189 insertions(+), 145 deletions(-)
Title: Find Clinical Trial Sites Under-Reporting Adverse Events
Description: Monitoring of Adverse Event (AE) reporting in clinical trials is
important for patient safety. Sites that are under-reporting AEs can be detected
using Bootstrap-based simulations that simulate overall AE reporting. Based on the
simulation an AE under-reporting probability is assigned to each site in a
given trial (Koneswarakantha 2021 <doi:10.1007/s40264-020-01011-5>).
Author: Bjoern Koneswarakantha [aut, cre, cph]
,
F. Hoffmann-La Roche Ltd [cph]
Maintainer: Bjoern Koneswarakantha <bjoern.koneswarakantha@roche.com>
Diff between simaerep versions 0.4.3 dated 2023-03-03 and 0.5.0 dated 2024-04-03
DESCRIPTION | 8 MD5 | 62 +++--- NAMESPACE | 4 NEWS.md | 8 R/0_imports.R | 17 - R/S3_orivisit.R | 2 R/S3_simaerep.R | 13 + R/lint.R | 3 R/simaerep.R | 217 +++++++++++++--------- R/simaerep_plot.R | 229 ++++++++++++------------ R/simulate_test_data.R | 173 +++++++++++++----- R/sysdata.rda |binary README.md | 5 inst/WORDLIST | 8 man/eval_sites.Rd | 6 man/figures/README-unnamed-chunk-2-1.png |binary man/get_legend.Rd |only man/plot_study.Rd | 5 man/prob_lower_site_ae_vs_study_ae.Rd | 10 - man/sim_after_prep.Rd | 7 man/sim_sites.Rd | 7 man/sim_studies.Rd | 3 man/sim_test_data_portfolio.Rd | 9 man/sim_test_data_study.Rd | 13 + man/simaerep.Rd | 10 - tests/testthat/_snaps/eval_sites.md | 4 tests/testthat/_snaps/validation/study-025.svg | 204 ++++++++++----------- tests/testthat/_snaps/validation/study-050.svg | 184 +++++++++---------- tests/testthat/_snaps/validation/study-075.svg | 236 ++++++++++++------------- tests/testthat/_snaps/validation/study-100.svg | 130 ++++++------- tests/testthat/test_over_reporting.R |only tests/testthat/test_plot.R | 2 tests/testthat/test_sim_sites.R | 1 33 files changed, 884 insertions(+), 696 deletions(-)
Title: Tools for Comparing Text Messages Across Time and Media
Description: A collection of tools for measuring the similarity of text messages and tracing the flow of messages over
time and across media.
Author: Kasper Welbers & Wouter van Atteveldt
Maintainer: Kasper Welbers <kasperwelbers@gmail.com>
Diff between RNewsflow versions 1.2.7 dated 2023-05-07 and 1.2.8 dated 2024-04-03
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- R/compare_documents.r | 3 ++- R/dtm_functions.r | 8 -------- R/feature_preparation.r | 10 ++++++---- build/vignette.rds |binary inst/doc/RNewsflow.R | 2 +- inst/doc/RNewsflow.Rmd | 2 +- inst/doc/RNewsflow.html | 8 ++++---- man/compare_documents.Rd | 3 ++- man/term_char_sim.Rd | 5 +++-- man/term_day_dist.Rd | 8 -------- man/term_union.Rd | 5 +++-- vignettes/RNewsflow.Rmd | 2 +- 14 files changed, 41 insertions(+), 51 deletions(-)
Title: Constrained Groupwise Additive Index Models
Description: Fits constrained groupwise additive index models and provides functions for inference and interpretation of these models. The method is described in Masselot, Chebana, Campagna, Lavigne, Ouarda, Gosselin (2022) "Constrained groupwise additive index models" <doi:10.1093/biostatistics/kxac023>.
Author: Pierre Masselot [aut, cre]
Maintainer: Pierre Masselot <pierre.masselot@lshtm.ac.uk>
Diff between cgaim versions 1.0.0 dated 2022-07-15 and 1.0.1 dated 2024-04-03
cgaim-1.0.0/cgaim/tests/testthat/test-confint.R |only cgaim-1.0.1/cgaim/DESCRIPTION | 8 +++---- cgaim-1.0.1/cgaim/MD5 | 21 +++++++++++--------- cgaim-1.0.1/cgaim/NAMESPACE | 2 + cgaim-1.0.1/cgaim/NEWS.md | 9 ++++++++ cgaim-1.0.1/cgaim/R/confint.boot.cgaim.R | 2 - cgaim-1.0.1/cgaim/R/smooth_scam.R | 6 ++--- cgaim-1.0.1/cgaim/R/vcov.boot.cgaim.R |only cgaim-1.0.1/cgaim/R/vcov.cgaim.R |only cgaim-1.0.1/cgaim/README.md | 2 - cgaim-1.0.1/cgaim/inst/CITATION | 14 ++++++------- cgaim-1.0.1/cgaim/man/vcov.cgaim.Rd |only cgaim-1.0.1/cgaim/tests/testthat/test-uncertainty.R |only cgaim-1.0.1/cgaim/tests/testthat/test_updateAlpha.R | 4 +-- 14 files changed, 41 insertions(+), 27 deletions(-)
Title: Parse and Manipulate Research Patient Data Registry ('RPDR')
Text Queries
Description: Functions to load Research Patient Data Registry ('RPDR') text queries from Partners Healthcare institutions into R.
The package also provides helper functions to manipulate data and execute common procedures
such as finding the closest radiological exams considering a given timepoint, or creating a DICOM header database
from the downloaded images. All functionalities are parallelized for fast and efficient analyses.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <mkolossvary@mgh.harvard.edu>
Diff between parseRPDR versions 1.1.0 dated 2024-01-09 and 1.1.1 dated 2024-04-03
DESCRIPTION | 17 +++----- MD5 | 74 ++++++++++++++++++------------------ NEWS.md | 3 + R/load_all_data.R | 10 ++-- man/load_all_data.Rd | 2 tests/testthat.R | 8 +-- tests/testthat/test-all_ids_mi2b2.R | 1 tests/testthat/test-convert_dia.R | 4 - tests/testthat/test-convert_enc.R | 4 - tests/testthat/test-convert_lab.R | 2 tests/testthat/test-convert_med.R | 4 - tests/testthat/test-convert_notes.R | 2 tests/testthat/test-convert_phy.R | 4 - tests/testthat/test-convert_prc.R | 4 - tests/testthat/test-convert_rfv.R | 4 - tests/testthat/test-create_img_db.R | 4 - tests/testthat/test-find_exam.R | 2 tests/testthat/test-load_all.R | 2 tests/testthat/test-load_bib.R | 2 tests/testthat/test-load_con.R | 2 tests/testthat/test-load_dem.R | 2 tests/testthat/test-load_dem_old.R | 2 tests/testthat/test-load_dia.R | 2 tests/testthat/test-load_enc.R | 2 tests/testthat/test-load_lab.R | 2 tests/testthat/test-load_lno.R | 2 tests/testthat/test-load_mcm.R | 4 - tests/testthat/test-load_med.R | 2 tests/testthat/test-load_mic.R | 2 tests/testthat/test-load_mrn.R | 2 tests/testthat/test-load_notes.R | 2 tests/testthat/test-load_phy.R | 2 tests/testthat/test-load_prc.R | 2 tests/testthat/test-load_prv.R | 2 tests/testthat/test-load_ptd.R | 2 tests/testthat/test-load_rdt.R | 2 tests/testthat/test-load_rfv.R | 2 tests/testthat/test-load_trn.R | 2 38 files changed, 98 insertions(+), 95 deletions(-)
Title: Retrieval, Analysis and Visualization of Air Traffic Data
Description: Provides functionalities and data structures to retrieve, analyze and visualize aviation
data. It includes a client interface to the 'OpenSky' API <https://opensky-network.org>. It allows
retrieval of flight information, as well as aircraft state vectors.
Author: Rafael Ayala, Daniel Ayala, David Ruiz, Aleix Selles, Lara Selles Vidal
Maintainer: Rafael Ayala <rafael.ayala@oist.jp>
Diff between openSkies versions 1.1.6 dated 2021-12-19 and 1.2.1 dated 2024-04-03
DESCRIPTION | 10 - MD5 | 38 ++-- NAMESPACE | 4 NEWS | 4 R/openSkies_formatResponseFunctions.R | 30 +-- R/openSkies_getFlightsFunctions.R | 284 +++++++----------------------- R/openSkies_getStateVectorsFunctions.R | 31 ++- R/openSkies_otherSupportFunctions.R | 306 ++++++++++++++++++++++++++++++++- R/openSkies_plottingFunctions.R | 6 build/vignette.rds |binary inst/doc/openSkies.html | 142 ++++++--------- inst/unitTests/test_all.R | 6 man/findFlightPhases.Rd | 2 man/getAircraftFlights.Rd | 8 man/getAircraftStateVectorsSeries.Rd | 8 man/getAirportArrivals.Rd | 8 man/getAirportDepartures.Rd | 8 man/getIntervalFlights.Rd | 10 - man/getIntervalStateVectors.Rd | 12 - man/getSingleTimeStateVectors.Rd | 8 20 files changed, 540 insertions(+), 385 deletions(-)
Title: Unbiased Thematic Map Accuracy and Area
Description: Unbiased estimators of overall and per-class thematic map accuracy and area published in Olofsson et al. (2014) <doi:10.1016/j.rse.2014.02.015> and Stehman (2014) <doi:10.1080/01431161.2014.930207>.
Author: Hugo Costa [aut, cre]
Maintainer: Hugo Costa <hugoagcosta@gmail.com>
Diff between mapaccuracy versions 0.1.1 dated 2022-08-20 and 0.1.2 dated 2024-04-03
DESCRIPTION | 10 ++++---- MD5 | 14 ++++++------ NEWS.md | 6 +++++ R/internal.R | 8 +++---- R/olofsson.R | 60 +++++++++++++++++++++++++++++++++++------------------ R/stehman2014.R | 50 ++++++++++++++++++++++++++++++-------------- man/olofsson.Rd | 31 ++++++++++++++++++++------- man/stehman2014.Rd | 40 ++++++++++++++++++++++------------- 8 files changed, 145 insertions(+), 74 deletions(-)
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement
complex random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain
an efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [...truncated...]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.9.10 dated 2023-12-12 and 1.9.11 dated 2024-04-03
DESCRIPTION | 8 +++--- MD5 | 12 +++++----- NEWS | 12 ++++++++++ R/zzz.R | 37 +++++++++++++------------------ inst/include/TMB.hpp | 4 +++ inst/include/tmb_core.hpp | 18 +++++++-------- inst/include/tmbutils/getListElement.hpp | 5 +++- 7 files changed, 55 insertions(+), 41 deletions(-)
Title: 'Shiny' Modules for General Tasks
Description: 'Shiny' apps can often make use of the same key elements, this package provides modules for common tasks (data upload, wrangling data, figure generation and saving the app state). These modules can react and interact as well as generate code to create reproducible analyses.
Author: John Harrold [aut, cre]
Maintainer: John Harrold <john.m.harrold@gmail.com>
Diff between formods versions 0.1.3 dated 2023-12-10 and 0.1.4 dated 2024-04-03
DESCRIPTION | 12 - MD5 | 72 +++--- NAMESPACE | 3 NEWS.md | 17 + R/ASM_Server.R | 50 +++- R/FG_Server.R | 57 +++-- R/formods.R | 361 +++++++++++++++++++++++++++++----- inst/doc/included_modules.R | 4 inst/doc/included_modules.html | 2 inst/doc/making_modules.R | 4 inst/doc/making_modules.Rmd | 25 ++ inst/doc/making_modules.html | 35 +++ inst/templates/ZZ.yaml | 8 inst/templates/ZZ_Server.R | 231 ++++++--------------- inst/templates/ZZ_funcs.R |only inst/templates/ZZ_module_components.R | 2 inst/test_apps/FG_funcs.R | 6 inst/test_apps/FM_report.R | 2 man/ASM_test_mksession.Rd | 3 man/FG_append_report.Rd | 10 man/FG_build.Rd | 6 man/FG_extract_page.Rd | 6 man/FG_fetch_code.Rd | 2 man/FG_fetch_current_fig.Rd | 6 man/FG_new_fig.Rd | 6 man/FG_set_current_fig.Rd | 6 man/FG_test_mksession.Rd | 2 man/FG_update_checksum.Rd | 2 man/FM_fetch_mdl.Rd | 16 + man/FM_generate_report.Rd | 2 man/FM_message.Rd | 5 man/fers_builder.Rd | 2 man/formods.Rd | 2 man/formods_check.Rd |only man/has_updated.Rd |only man/icon_link.Rd | 2 man/linspace.Rd |only tests/testthat/test-formods.R | 19 + vignettes/making_modules.Rmd | 25 ++ 39 files changed, 681 insertions(+), 332 deletions(-)
Title: An Interface to Google's 'BigQuery Storage' API
Description: Easily talk to Google's 'BigQuery Storage' API from R
(<https://cloud.google.com/bigquery/docs/reference/storage/rpc>).
Author: Bruno Tremblay [aut, cre],
Google LLC [cph, fnd]
Maintainer: Bruno Tremblay <openr@neoxone.com>
Diff between bigrquerystorage versions 1.0.0 dated 2024-02-26 and 1.1.0 dated 2024-04-03
bigrquerystorage-1.0.0/bigrquerystorage/tools/winlibs.R |only bigrquerystorage-1.1.0/bigrquerystorage/DESCRIPTION | 8 +- bigrquerystorage-1.1.0/bigrquerystorage/MD5 | 13 +-- bigrquerystorage-1.1.0/bigrquerystorage/NEWS.md | 4 + bigrquerystorage-1.1.0/bigrquerystorage/README.md | 9 ++ bigrquerystorage-1.1.0/bigrquerystorage/man/bigrquerystorage-package.Rd | 1 bigrquerystorage-1.1.0/bigrquerystorage/src/Makevars.win | 30 +------- bigrquerystorage-1.1.0/bigrquerystorage/src/bqs.cpp | 35 ++++++---- 8 files changed, 48 insertions(+), 52 deletions(-)
More information about bigrquerystorage at CRAN
Permanent link
Title: Assessment Tools for Regression Models with Discrete and
Semicontinuous Outcomes
Description: Provides assessment tools for regression models with discrete and semicontinuous outcomes proposed in Yang (2023) <doi:10.48550/arXiv.2308.15596>. It calculates the double probability integral transform (DPIT) residuals, constructs QQ plots of residuals and the ordered curve for assessing mean structures.
Author: Lu Yang [aut],
Jeonghwan Lee [cre, aut]
Maintainer: Jeonghwan Lee <lee03938@umn.edu>
Diff between assessor versions 1.0.0 dated 2024-01-28 and 1.1.0 dated 2024-04-03
DESCRIPTION | 14 ++++++++------ MD5 | 22 ++++++++++++++-------- NAMESPACE | 2 ++ R/MEPS.R |only R/binom.R | 2 ++ R/logistic.R | 1 + R/nb.R | 2 +- R/pois.R | 1 + R/quasi.R |only R/quasi_func.R |only R/znb.R | 3 ++- R/zpois.R | 3 ++- data |only man/MEPS.Rd |only man/resid_quasi.Rd |only 15 files changed, 33 insertions(+), 17 deletions(-)