Title: Draw Three Dimensional Predict Plot Using Package 'rgl'
Description: Draw 2 dimensional and three dimensional plot for multiple regression models using package 'ggplot2' and 'rgl'.
Supports linear models (lm), generalized linear models (glm) and local polynomial regression fittings (loess).
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
Diff between predict3d versions 0.1.4 dated 2023-04-12 and 0.1.5 dated 2024-04-04
DESCRIPTION | 11 +-- MD5 | 15 ++--- NAMESPACE | 2 NEWS.md | 7 ++ R/ggPredict.R | 13 ++++ build/vignette.rds |binary inst/doc/predict3d.R | 4 - inst/doc/predict3d.html | 142 ++++++++++++++++++++++++++---------------------- man/seq_range.Rd |only 9 files changed, 114 insertions(+), 80 deletions(-)
Title: Retrieve Data from the National Transit Database
Description: Downloads the latest 'National Transit Database'
data, processes it, and returns in a tidy data format.
Author: Harald Kliems [cre, aut, cph]
Maintainer: Harald Kliems <kliems@gmail.com>
Diff between ntdr versions 0.3.3 dated 2023-10-07 and 0.3.4 dated 2024-04-04
DESCRIPTION | 6 +- MD5 | 16 +++---- NEWS.md | 3 + R/get_ntd.R | 42 ------------------- R/utils.R | 2 README.md | 18 ++++---- inst/doc/ntdr.Rmd | 12 +++-- inst/doc/ntdr.html | 114 +++++++++++++++++++++++++++++------------------------ vignettes/ntdr.Rmd | 12 +++-- 9 files changed, 104 insertions(+), 121 deletions(-)
Title: Tools for Exploring Regression Models with 'iNZight'
Description: Provides a suite of functions to use with regression models, including summaries, residual plots, and factor comparisons. Used as part of the Model Fitting module of 'iNZight', a graphical user interface providing easy exploration and visualisation of data for students of statistics, available in both desktop and online versions.
Author: Tom Elliott [aut, cre] ,
Simon Potter [aut],
David Banks [aut],
Danny Chang [ctb]
Maintainer: Tom Elliott <tom.elliott@auckland.ac.nz>
Diff between iNZightRegression versions 1.3.3 dated 2023-01-26 and 1.3.4 dated 2024-04-04
iNZightRegression-1.3.3/iNZightRegression/R/iNZightRegression.R |only iNZightRegression-1.3.3/iNZightRegression/man/iNZightRegression.Rd |only iNZightRegression-1.3.4/iNZightRegression/DESCRIPTION | 6 +++--- iNZightRegression-1.3.4/iNZightRegression/MD5 | 6 +++--- iNZightRegression-1.3.4/iNZightRegression/R/iNZightRegression-package.R |only iNZightRegression-1.3.4/iNZightRegression/man/iNZightRegression-package.Rd |only 6 files changed, 6 insertions(+), 6 deletions(-)
More information about iNZightRegression at CRAN
Permanent link
Title: Time Varying GARCH Modelling
Description: Simulation, estimation and inference for univariate and multivariate TV(s)-GARCH(p,q,r)-X models, where s indicates the number and shape of the transition functions, p is the ARCH order, q is the GARCH order, r is the asymmetry order, and 'X' indicates that covariates can be included; see Campos-Martins and Sucarrat (2024) <doi:10.18637/jss.v108.i09>. In the multivariate case, variances are estimated equation by equation and dynamic conditional correlations are allowed. The TV long-term component of the variance as in the multiplicative TV-GARCH model of Amado and Terasvirta (2013) <doi:10.1016/j.jeconom.2013.03.006> introduces non-stationarity whereas the GARCH-X short-term component describes conditional heteroscedasticity. Maximisation by parts leads to consistent and asymptotically normal estimates.
Author: Susana Campos-Martins [aut, cre], Genaro Sucarrat [ctb]
Maintainer: Susana Campos-Martins <scmartins@ucp.pt>
Diff between tvgarch versions 2.4.1 dated 2023-10-01 and 2.4.2 dated 2024-04-04
DESCRIPTION | 12 ++++++------ MD5 | 23 ++++++++++++----------- NEWS | 6 ++++++ R/tvgarch-internal.R | 2 +- inst |only man/coef.mtvgarch.Rd | 9 +++++++-- man/coef.tvgarch.Rd | 9 +++++++-- man/coef.tvgarchTest.Rd | 9 +++++++-- man/dccObj.Rd | 10 ++++++++++ man/mtvgarch.Rd | 10 ++++++++-- man/tvgarch-package.Rd | 18 ++++++++++++++---- man/tvgarch.Rd | 9 +++++++-- man/tvgarchTest.Rd | 6 ++++-- 13 files changed, 89 insertions(+), 34 deletions(-)
Title: Split a Dataframe, Tibble, or Data.table into Training and Test
Sets
Description: Split a dataframe, tibble, or data.table into training and test sets. Return either a list, an index, or directly assign training and test sets into memory.
Author: Zhaochen He [aut, cre]
Maintainer: Zhaochen He <eastnileuc@gmail.com>
Diff between trainsplit versions 1.0 dated 2024-03-29 and 1.1 dated 2024-04-04
DESCRIPTION | 8 +-- MD5 | 8 +-- R/trainsplit.R | 96 +++++++++++++++++++++------------------ man/trainsplit.Rd | 13 +++-- tests/testthat/test-trainsplit.R | 17 ++++-- 5 files changed, 80 insertions(+), 62 deletions(-)
Title: Robust Bayesian T-Test
Description: An implementation of Bayesian model-averaged t-test that allows
users to draw inference about the presence vs absence of the effect,
heterogeneity of variances, and outliers. The 'RoBTT' packages estimates model
ensembles of models created as a combination of the competing hypotheses and uses
Bayesian model-averaging to combine the models using posterior model probabilities.
Users can obtain the model-averaged posterior distributions and inclusion Bayes
factors which account for the uncertainty in the data generating process
(Maier et al., 2022, <doi:10.31234/osf.io/d5zwc>).
Users can define a wide range of informative priors for all parameters
of interest. The package provides convenient functions for summary, visualizations,
and fit diagnostics.
Author: Frantisek Bartos [aut, cre] ,
Maximilian Maier [aut] ,
Henrik R Godmann [aut]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between RoBTT versions 1.2.1 dated 2023-09-20 and 1.3.0 dated 2024-04-04
DESCRIPTION | 13 MD5 | 63 NAMESPACE | 1 NEWS.md | 7 R/check-input-and-settings.R | 152 + R/check-priors-and-models.R | 58 R/fit-and-marglik.R | 7 R/main.R | 195 + R/stan_tools.R | 82 R/summary.R | 13 R/tools.R | 25 R/utilities.R | 2 README.md | 51 build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 9 inst/doc/Introduction_to_RoBTT.html | 4 inst/doc/Truncated_t_test.R |only inst/doc/Truncated_t_test.Rmd |only inst/doc/Truncated_t_test.html |only inst/stan/include/common_functions.stan | 26 inst/stan/normal.stan | 37 inst/stan/t.stan | 32 man/RoBTT.Rd | 56 man/check_setup.Rd | 33 man/prior_none.Rd | 80 man/update.RoBTT.Rd |only src/Makevars.win | 2 src/stanExports_beta.h | 3132 ++++++++++++++------------ src/stanExports_gamma.h | 3102 ++++++++++++++------------ src/stanExports_lognormal.h | 3134 ++++++++++++++------------ src/stanExports_normal.h | 3526 +++++++++++++++++------------ src/stanExports_t.h | 3799 ++++++++++++++++++-------------- tests/testthat/test-4-diagnostics.R | 2 vignettes/Truncated_t_test.Rmd |only 35 files changed, 10143 insertions(+), 7500 deletions(-)
Title: Linked Inference of Genomic Experimental Relationships
Description: Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.
Author: Joshua Welch [aut],
Yichen Wang [aut, cre],
Chao Gao [aut],
Jialin Liu [aut],
Joshua Sodicoff [aut, ctb],
Velina Kozareva [aut, ctb],
Evan Macosko [aut, ctb],
Paul Hoffman [ctb],
Ilya Korsunsky [ctb],
Robert Lee [ctb],
Andrew Robbins [ctb]
Maintainer: Yichen Wang <wayichen@umich.edu>
Diff between rliger versions 2.0.0 dated 2024-03-20 and 2.0.1 dated 2024-04-04
DESCRIPTION | 12 ++-- MD5 | 94 ++++++++++++++++----------------- NAMESPACE | 2 NEWS.md | 21 ++++++- R/ATAC.R | 16 +++-- R/GSEA.R | 30 +++++++--- R/aaa.R | 4 + R/cINMF.R | 47 +++++++++------- R/classConversion.R | 40 ++++++++++---- R/deprecated.R | 2 R/dotplot.R | 2 R/generics.R | 43 ++++++++------- R/h5Utility.R | 5 + R/import.R | 72 +++++++++++++++++++------ R/integration.R | 59 ++++++++++++++------ R/preprocess.R | 2 R/util.R | 51 ++++++++++-------- R/visualization.R | 12 ++-- README.md | 24 +++++++- data/bmmc.rda |binary data/pbmc.rda |binary data/pbmcPlot.rda |binary inst/doc/liger-vignette.html | 4 - inst/extdata/ctrl.h5 |binary inst/extdata/stim.h5 |binary man/as.liger.Rd | 43 ++++++++------- man/createH5LigerDataset.Rd | 16 +++-- man/createLiger.Rd | 25 ++++++-- man/dot-complexHeatmapDotPlot.Rd | 2 man/exportInteractTrack.Rd | 5 + man/linkGenesAndPeaks.Rd | 11 ++- man/plotSankey.Rd | 8 +- man/plotVolcano.Rd | 4 - man/quantileNorm.Rd | 5 + man/readLiger.Rd | 18 +++++- man/reexports.Rd | 3 - man/restoreH5Liger.Rd | 4 + man/runCINMF.Rd | 12 ++-- man/runGOEnrich.Rd | 15 ++--- man/runGSEA.Rd | 7 ++ man/scaleNotCenter.Rd | 2 src/cinmf_util.cpp | 3 + tests/testthat/test_downstream.R | 71 ++++++++++++++----------- tests/testthat/test_factorization.R | 54 +++++++++++-------- tests/testthat/test_object.R | 102 ++++++++++++++++++------------------ tests/testthat/test_preprocessing.R | 56 +++++++++++-------- tests/testthat/test_subset.R | 33 +++++++---- tests/testthat/test_visualization.R | 50 ++++++++++------- 48 files changed, 685 insertions(+), 406 deletions(-)
Title: Analyzing Animal's Rhythmicity
Description: Analyze and visualize the rhythmic behavior of animals using the
degree of functional coupling (See Scheibe (1999) <doi:10.1076/brhm.30.2.216.1420>),
compute and visualize harmonic power, actograms, average activity and diurnality
index.
Author: Hassan-Roland Nasser [aut, cre],
Marie Schneider [aut, ctb],
Joanna Stachowicz [aut, rev],
Christina Umstaetter [aut, ths]
Maintainer: Hassan-Roland Nasser <hassan.nasser@me.com>
Diff between digiRhythm versions 1.1 dated 2022-11-15 and 1.2 dated 2024-04-04
digiRhythm-1.1/digiRhythm/tests |only digiRhythm-1.2/digiRhythm/DESCRIPTION | 15 digiRhythm-1.2/digiRhythm/MD5 | 112 digiRhythm-1.2/digiRhythm/NAMESPACE | 99 digiRhythm-1.2/digiRhythm/R/actogram.R | 186 digiRhythm-1.2/digiRhythm/R/daily_acticity_wrap_plot.R | 200 digiRhythm-1.2/digiRhythm/R/daily_average_activity.R | 226 digiRhythm-1.2/digiRhythm/R/data.R | 232 digiRhythm-1.2/digiRhythm/R/dfc.R | 452 digiRhythm-1.2/digiRhythm/R/diurnality.R | 347 digiRhythm-1.2/digiRhythm/R/globals.R | 38 digiRhythm-1.2/digiRhythm/R/import_raw_activity_data.R | 470 digiRhythm-1.2/digiRhythm/R/is_dgm_friendly.R | 158 digiRhythm-1.2/digiRhythm/R/lomb_scargle_periodogram.R | 434 digiRhythm-1.2/digiRhythm/R/resample_dgm.R | 128 digiRhythm-1.2/digiRhythm/R/sliding_DI.R |only digiRhythm-1.2/digiRhythm/R/utils.R | 308 digiRhythm-1.2/digiRhythm/README.md | 403 digiRhythm-1.2/digiRhythm/build/vignette.rds |binary digiRhythm-1.2/digiRhythm/data/timedata.rda |only digiRhythm-1.2/digiRhythm/inst/doc/Actgram_diurnality_avg_activity.R | 66 digiRhythm-1.2/digiRhythm/inst/doc/Actgram_diurnality_avg_activity.Rmd | 158 digiRhythm-1.2/digiRhythm/inst/doc/Actgram_diurnality_avg_activity.html | 908 digiRhythm-1.2/digiRhythm/inst/doc/DFC_and_HP_and_changing_plots.R | 82 digiRhythm-1.2/digiRhythm/inst/doc/DFC_and_HP_and_changing_plots.Rmd | 180 digiRhythm-1.2/digiRhythm/inst/doc/DFC_and_HP_and_changing_plots.html | 1591 digiRhythm-1.2/digiRhythm/inst/doc/Loading_and_preprocessing_data_in_DigiRhythm.R | 126 digiRhythm-1.2/digiRhythm/inst/doc/Loading_and_preprocessing_data_in_DigiRhythm.Rmd | 258 digiRhythm-1.2/digiRhythm/inst/doc/Loading_and_preprocessing_data_in_DigiRhythm.html | 1090 digiRhythm-1.2/digiRhythm/inst/doc/Visualisation.R | 46 digiRhythm-1.2/digiRhythm/inst/doc/Visualisation.Rmd | 110 digiRhythm-1.2/digiRhythm/inst/doc/Visualisation.html | 822 digiRhythm-1.2/digiRhythm/inst/extdata/sample_data.csv |51190 +++++----- digiRhythm-1.2/digiRhythm/man/actogram.Rd | 82 digiRhythm-1.2/digiRhythm/man/daily_activity_wrap_plot.Rd | 112 digiRhythm-1.2/digiRhythm/man/daily_average_activity.Rd | 82 digiRhythm-1.2/digiRhythm/man/df516b_2.Rd | 50 digiRhythm-1.2/digiRhythm/man/df603.Rd | 52 digiRhythm-1.2/digiRhythm/man/df625.Rd | 52 digiRhythm-1.2/digiRhythm/man/df678_2.Rd | 50 digiRhythm-1.2/digiRhythm/man/df689b_3.Rd | 50 digiRhythm-1.2/digiRhythm/man/df691b_1.Rd | 50 digiRhythm-1.2/digiRhythm/man/df759a_3.Rd | 50 digiRhythm-1.2/digiRhythm/man/df_act_info.Rd | 36 digiRhythm-1.2/digiRhythm/man/dfc.Rd | 156 digiRhythm-1.2/digiRhythm/man/dgm_periodicity.Rd | 46 digiRhythm-1.2/digiRhythm/man/diurnality.Rd | 86 digiRhythm-1.2/digiRhythm/man/import_raw_activity_data.Rd | 202 digiRhythm-1.2/digiRhythm/man/levopt.Rd | 50 digiRhythm-1.2/digiRhythm/man/lomb_scargle_periodogram.Rd | 110 digiRhythm-1.2/digiRhythm/man/pbaluev.Rd | 48 digiRhythm-1.2/digiRhythm/man/print_v.Rd | 40 digiRhythm-1.2/digiRhythm/man/remove_activity_outliers.Rd | 36 digiRhythm-1.2/digiRhythm/man/sliding_DI.Rd |only digiRhythm-1.2/digiRhythm/man/timedata.Rd |only digiRhythm-1.2/digiRhythm/vignettes/Actgram_diurnality_avg_activity.Rmd | 158 digiRhythm-1.2/digiRhythm/vignettes/DFC_and_HP_and_changing_plots.Rmd | 180 digiRhythm-1.2/digiRhythm/vignettes/Loading_and_preprocessing_data_in_DigiRhythm.Rmd | 258 digiRhythm-1.2/digiRhythm/vignettes/Visualisation.Rmd | 110 59 files changed, 31293 insertions(+), 31288 deletions(-)
Title: Robust Marginal Bayesian Variable Selection for Gene-Environment
Interactions
Description: Recently, multiple marginal variable selection methods have been developed and shown to be effective in Gene-Environment interactions studies. We propose a novel marginal Bayesian variable selection method for Gene-Environment interactions studies. In particular, our marginal Bayesian method is robust to data contamination and outliers in the outcome variables. With the incorporation of spike-and-slab priors, we have implemented the Gibbs sampler based on Markov Chain Monte Carlo. The core algorithms of the package have been developed in 'C++'.
Author: Xi Lu [aut, cre],
Cen Wu [aut]
Maintainer: Xi Lu <xilu@ksu.edu>
Diff between marble versions 0.0.2 dated 2023-05-10 and 0.0.3 dated 2024-04-04
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- R/GxESelection.R | 2 +- R/marble-package.R | 2 +- R/marble.R | 10 +++++----- build/partial.rdb |binary man/GxESelection.Rd | 2 +- man/marble-package.Rd | 3 ++- man/marble.Rd | 10 +++++----- 9 files changed, 28 insertions(+), 27 deletions(-)
Title: Bayesian Whole-Genome Regression
Description: Whole-genome regression methods on Bayesian framework fitted via EM
or Gibbs sampling, single step (<doi:10.1534/g3.119.400728>), univariate and multivariate (<doi:10.1186/s12711-022-00730-w>),
with optional kernel term and sampling techniques (<doi:10.1186/s12859-017-1582-3>).
Author: Alencar Xavier [aut, cre] ,
William Muir [aut],
David Habier [aut],
Kyle Kocak [aut],
Shizhong Xu [aut],
Katy Rainey [aut]
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between bWGR versions 2.2.6 dated 2024-03-03 and 2.2.7 dated 2024-04-04
DESCRIPTION | 8 +- MD5 | 20 +++--- R/RcppExports.R | 48 +++++++++++++-- R/mix.R | 48 +++++++++++---- man/bWGR.Rd | 4 - man/mvr.Rd | 19 ++++-- man/xtra.Rd | 3 src/RcppExports.cpp | 155 +++++++++++++++++++++++++++++++++++++++++++++------ src/mega20231111.cpp | 82 +++++++++++++++++++++++--- src/mega20240303.cpp | 21 ++++-- src/wgr20210213.cpp | 20 +++--- 11 files changed, 343 insertions(+), 85 deletions(-)
Title: Interface for 'All of Us' Researcher Workbench
Description: Streamline use of the 'All of Us' Researcher Workbench (<https://www.researchallofus.org/data-tools/workbench/>)with tools to extract and manipulate data from the 'All of Us' database. Increase interoperability with the Observational Health Data Science and Informatics ('OHDSI') tool stack by decreasing reliance of 'All of Us' tools and allowing for cohort creation via 'Atlas'. Improve reproducible and transparent research using 'All of Us'.
Author: Louisa Smith [aut, cph] ,
Rob Cavanaugh [aut, cre, cph]
Maintainer: Rob Cavanaugh <r.cavanaugh@northeastern.edu>
Diff between allofus versions 1.0.0 dated 2023-12-21 and 1.1.0 dated 2024-04-04
DESCRIPTION | 15 - LICENSE | 2 MD5 | 91 +++++---- NAMESPACE | 4 NEWS.md |only R/allofus-package.R | 1 R/aou_atlas_cohort.R | 128 ++++++++++--- R/aou_concept_set.R | 82 ++++---- R/aou_connect.R | 147 ++++++++++----- R/aou_join.R | 63 ++++-- R/aou_ls.R | 113 +++++++---- R/aou_obs_period.R | 290 ++++++++++++++++++++++-------- R/aou_session_info.R | 14 - R/aou_survey.R | 113 ++++++----- R/aou_temp_tables.R |only R/aou_test.R | 4 R/data.R | 45 ++-- R/utils-pipe.R | 8 README.md | 33 +++ build/vignette.rds |binary inst/CITATION |only inst/pkgdown.yml | 4 man/aou_atlas_cohort.Rd | 46 ++-- man/aou_bucket_to_workspace.Rd | 31 +-- man/aou_codebook.Rd | 17 - man/aou_cohort_example.Rd | 6 man/aou_collect.Rd |only man/aou_compute.Rd |only man/aou_concept_set.Rd | 53 +++-- man/aou_connect.Rd | 22 +- man/aou_create_temp_table.Rd |only man/aou_health_history.Rd | 13 - man/aou_join.Rd | 40 ++-- man/aou_ls_bucket.Rd | 14 - man/aou_ls_workspace.Rd | 9 man/aou_observation_period.Rd | 132 ++++++++++--- man/aou_session_info.Rd | 13 - man/aou_sql.Rd | 44 +++- man/aou_survey.Rd | 90 +++++---- man/aou_table_info.Rd | 9 man/aou_tables.Rd | 15 + man/aou_workspace_to_bucket.Rd | 31 +-- man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-soft-deprecated.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/on_workbench.Rd | 6 tests/testthat/test-aou_connect.R | 6 tests/testthat/test-obs_period.R | 3 54 files changed, 1175 insertions(+), 582 deletions(-)
Title: Convert Data among QTL Mapping Packages
Description: Functions to convert data structures among the 'qtl2', 'qtl', and 'DOQTL' packages for mapping quantitative trait loci (QTL).
Author: Karl W Broman [aut, cre]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtl2convert versions 0.28 dated 2022-07-11 and 0.30 dated 2024-04-04
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 9 +++++++++ R/probs_doqtl_to_qtl2.R | 2 +- README.md | 3 ++- 5 files changed, 21 insertions(+), 11 deletions(-)
Title: Read and Write 'jamovi' Files ('.omv')
Description: The free and open a statistical spreadsheet 'jamovi'
(<https://www.jamovi.org>) aims to make statistical analyses easy and
intuitive. 'jamovi' produces syntax that can directly be used in R (in
connection with the R-package 'jmv'). Having import / export routines for
the data files 'jamovi' produces ('.omv') permits an easy transfer of
data and analyses between 'jamovi' and R.
Author: Sebastian Jentschke [aut, cre]
Maintainer: Sebastian Jentschke <sebastian.jentschke@uib.no>
Diff between jmvReadWrite versions 0.4.4 dated 2024-02-27 and 0.4.5 dated 2024-04-04
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 7 +++++++ R/long2wide_omv.R | 8 ++++---- README.md | 4 ++-- build/vignette.rds |binary inst/CITATION | 4 ++-- inst/doc/jmvReadWrite.html | 8 ++++---- tests/testthat/test-long2wide_omv.R | 32 ++++++++++++++++++++++++++++++++ 9 files changed, 62 insertions(+), 23 deletions(-)
Title: Statistical Functions for the Delaporte Distribution
Description: Provides probability mass, distribution, quantile, random-variate
generation, and method-of-moments parameter-estimation functions for the
Delaporte distribution with parameterization based on Vose (2008)
<isbn:9780470512845>. The Delaporte is a discrete probability distribution
which can be considered the convolution of a negative binomial distribution
with a Poisson distribution. Alternatively, it can be considered a counting
distribution with both Poisson and negative binomial components. It has been
studied in actuarial science as a frequency distribution which has more
variability than the Poisson, but less than the negative binomial.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between Delaporte versions 8.3.0 dated 2023-10-02 and 8.4.0 dated 2024-04-04
DESCRIPTION | 8 +-- MD5 | 24 +++++------ R/Delaporte.R | 53 +++++++++++++------------ R/zzz.R | 7 +-- README.md | 90 ++++++-------------------------------------- build/partial.rdb |binary inst/CITATION | 2 inst/NEWS.Rd | 16 +++++++ inst/tinytest/test-ddelap.r | 4 + inst/tinytest/test-pdelap.r | 4 + inst/tinytest/test-qdelap.r | 87 +++++++++++++++++++++++++++++++----------- inst/tinytest/test-rdelap.r | 6 ++ src/delaporte.f90 | 9 ++-- 13 files changed, 161 insertions(+), 149 deletions(-)
Title: Genome Interval Arithmetic
Description: Read and manipulate genome intervals and signals. Provides
functionality similar to command-line tool suites within R, enabling
interactive analysis and visualization of genome-scale data. Riemondy
et al. (2017) <doi:10.12688/f1000research.11997.1>.
Author: Jay Hesselberth [aut] ,
Kent Riemondy [aut, cre] ,
RNA Bioscience Initiative [fnd, cph]
Maintainer: Kent Riemondy <kent.riemondy@cuanschutz.edu>
Diff between valr versions 0.7.0 dated 2023-09-18 and 0.8.0 dated 2024-04-04
DESCRIPTION | 8 +++--- MD5 | 46 +++++++++++++++++++++------------------- NAMESPACE | 1 NEWS.md | 4 +++ R/RcppExports.R | 4 +++ R/bed_genomecov.R |only R/globals.r | 2 - R/tbls.r | 2 - inst/doc/valr.R | 6 ++--- inst/doc/valr.Rmd | 6 ++--- inst/doc/valr.html | 14 ++++++------ man/bed_cluster.Rd | 1 man/bed_complement.Rd | 1 man/bed_flank.Rd | 1 man/bed_genomecov.Rd |only man/bed_merge.Rd | 1 man/bed_partition.Rd | 1 man/bed_shift.Rd | 1 man/bed_slop.Rd | 1 man/ivl_df.Rd | 1 man/valr.Rd | 2 - src/RcppExports.cpp | 12 ++++++++++ src/gcoverage.cpp |only src/init.c | 2 + tests/testthat/test_genomecov.R |only vignettes/valr.Rmd | 6 ++--- 26 files changed, 77 insertions(+), 46 deletions(-)
Title: Design Clinical Trials using Sequential Predictive Probability
Monitoring
Description: Functions are available to calibrate designs over a range of posterior and predictive thresholds, to plot the various design options, and to obtain the operating characteristics of optimal accuracy and optimal efficiency designs.
Author: Emily C. Zabor [aut, cre] ,
Brian P. Hobbs [aut],
Michael J. Kane [aut]
Maintainer: Emily C. Zabor <zabore2@ccf.org>
Diff between ppseq versions 0.2.3 dated 2024-01-23 and 0.2.4 dated 2024-04-04
DESCRIPTION | 6 MD5 | 14 +- NEWS.md | 4 R/calc_decision_rules.R | 155 ++++++++++++++++------ R/calibrate_thresholds.R | 6 R/plot.R | 8 - inst/doc/one_sample_expansion.html | 244 ++++++++++++++++++------------------ inst/doc/two_sample_randomized.html | 244 ++++++++++++++++++------------------ 8 files changed, 380 insertions(+), 301 deletions(-)
Title: Modules to Import and Manipulate Data in 'Shiny'
Description: 'Shiny' modules to import data into an application or 'addin'
from various sources, and to manipulate them after that.
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
Samra Goumri [aut],
Zauad Shahreer Abeer [aut],
Eduard Szoecs [ctb]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between datamods versions 1.4.5 dated 2024-02-28 and 1.5.0 dated 2024-04-04
DESCRIPTION | 13 MD5 | 37 +- NAMESPACE | 36 ++ NEWS.md | 7 R/create-column.R |only R/cut-variable.R |only R/datagrid-infos.R |only R/edit-data-utils.R | 10 R/edit-data.R | 2 R/import-modal.R | 49 +-- R/select-group.R | 11 R/show_data.R | 38 +- R/update-variables.R | 518 +++++++++++++++------------------ R/utils-shiny.R | 15 R/utils.R | 16 + R/zzz.R | 6 man/create-column.Rd |only man/cut-variable.Rd |only man/import-modal.Rd | 11 man/show_data.Rd | 14 man/update-variables.Rd | 1 tests/testthat/test-update-variables.R | 80 +---- 22 files changed, 442 insertions(+), 422 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Collection of custom input controls and user interface components for 'Shiny' applications.
Give your applications a unique and colorful style !
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
David Granjon [aut],
Ian Fellows [ctb] ,
Wil Davis [ctb] ,
Spencer Matthews [ctb] ,
JavaScript and CSS libraries authors [ctb, cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.8.3 dated 2024-03-21 and 0.8.4 dated 2024-04-04
DESCRIPTION | 6 MD5 | 64 NAMESPACE | 5 NEWS.md | 7 R/WinBox.R |only R/bootstrap-utils.R | 264 +- R/module-pickerGroup.R | 606 ++-- R/sw-dropdown.R | 572 ++-- R/sweetalert.R | 1246 +++++----- R/utils.R | 7 README.md | 650 ++--- inst/assets/bootstrap-select/picker-bindings.js | 220 - inst/assets/numericRange/js/numericRange-bindings.js | 124 inst/assets/shinyWidgets-bindings.min.js | 2 inst/assets/sweetalert2/sweetalert-bindings.js | 238 - inst/assets/utils.js | 32 inst/assets/vertical-tab-panel/vertical-tab-panel-bindings.js | 204 - inst/examples/WinBox |only inst/examples/airDatepicker/datepicker/app.R | 276 +- inst/examples/checkboxGroupButtons/server.R | 98 inst/examples/radioGroupButtons/server.R | 98 inst/examples/virtual-select/bslib-theming/app.R | 112 inst/packer/WinBox.js |only inst/packer/air-datepicker.js | 2 man/WinBox.Rd |only man/html_dependency_winbox.Rd |only man/wbControls.Rd |only man/wbOptions.Rd |only tests/testthat/test-checkboxGroupButtons.R | 398 +-- tests/testthat/test-radioGroupButtons.R | 398 +-- tests/testthat/test-updateCheckboxGroupButtons.R | 90 tests/testthat/test-updateRadioGroupButtons.R | 90 32 files changed, 2922 insertions(+), 2887 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for
quantitative text analysis in R. Provides functionality for corpus management,
creating and manipulating tokens and n-grams, exploring keywords in context,
forming and manipulating sparse matrices
of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and
distances, applying content dictionaries, applying supervised and unsupervised machine learning,
visually representing text and text analyses, and more.
Author: Kenneth Benoit [cre, aut, cph]
,
Kohei Watanabe [aut] ,
Haiyan Wang [aut] ,
Paul Nulty [aut] ,
Adam Obeng [aut] ,
Stefan Mueller [aut] ,
Akitaka Matsuo [aut] ,
William Lowe [aut] ,
Christian Mueller [ctb],
Olivier Delmarcelle [ctb] ,
European Research [...truncated...]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 3.3.1 dated 2023-05-18 and 4.0.0 dated 2024-04-04
quanteda-3.3.1/quanteda/R/readtext-methods.R |only quanteda-3.3.1/quanteda/man/readtext-methods.Rd |only quanteda-3.3.1/quanteda/src/Makevars |only quanteda-3.3.1/quanteda/tests/testthat/test-readtext-methods.R |only quanteda-3.3.1/quanteda/tests/testthat/test-texts.R |only quanteda-3.3.1/quanteda/vignettes/images/fig1.png |only quanteda-3.3.1/quanteda/vignettes/images/fig2.png |only quanteda-4.0.0/quanteda/DESCRIPTION | 33 quanteda-4.0.0/quanteda/MD5 | 449 +++---- quanteda-4.0.0/quanteda/NAMESPACE | 62 quanteda-4.0.0/quanteda/NEWS.md | 51 quanteda-4.0.0/quanteda/R/RcppExports.R | 144 +- quanteda-4.0.0/quanteda/R/aaa.R | 1 quanteda-4.0.0/quanteda/R/bootstrap_dfm.R | 41 quanteda-4.0.0/quanteda/R/casechange-functions.R | 8 quanteda-4.0.0/quanteda/R/char_select.R | 4 quanteda-4.0.0/quanteda/R/convert.R | 11 quanteda-4.0.0/quanteda/R/corpus-addsummary-metadata.R | 30 quanteda-4.0.0/quanteda/R/corpus-methods.R | 2 quanteda-4.0.0/quanteda/R/corpus.R | 26 quanteda-4.0.0/quanteda/R/corpus_sample.R | 5 quanteda-4.0.0/quanteda/R/corpus_subset.R | 4 quanteda-4.0.0/quanteda/R/corpus_trim.R | 14 quanteda-4.0.0/quanteda/R/data-documentation.R | 5 quanteda-4.0.0/quanteda/R/dfm-classes.R | 19 quanteda-4.0.0/quanteda/R/dfm-methods.R | 16 quanteda-4.0.0/quanteda/R/dfm-subsetting.R | 3 quanteda-4.0.0/quanteda/R/dfm.R | 442 ++----- quanteda-4.0.0/quanteda/R/dfm_group.R | 4 quanteda-4.0.0/quanteda/R/dfm_lookup.R | 3 quanteda-4.0.0/quanteda/R/dfm_match.R | 2 quanteda-4.0.0/quanteda/R/dfm_replace.R | 2 quanteda-4.0.0/quanteda/R/dfm_select.R | 65 - quanteda-4.0.0/quanteda/R/dfm_sort.R | 2 quanteda-4.0.0/quanteda/R/dfm_subset.R | 33 quanteda-4.0.0/quanteda/R/dfm_trim.R | 13 quanteda-4.0.0/quanteda/R/dfm_weight.R | 21 quanteda-4.0.0/quanteda/R/dictionaries.R | 46 quanteda-4.0.0/quanteda/R/docnames.R | 23 quanteda-4.0.0/quanteda/R/docvars.R | 16 quanteda-4.0.0/quanteda/R/fcm-methods.R | 1 quanteda-4.0.0/quanteda/R/fcm.R | 27 quanteda-4.0.0/quanteda/R/index.R | 26 quanteda-4.0.0/quanteda/R/kwic.R | 52 quanteda-4.0.0/quanteda/R/meta.R | 4 quanteda-4.0.0/quanteda/R/nfunctions.R | 127 +- quanteda-4.0.0/quanteda/R/object-builder.R | 66 - quanteda-4.0.0/quanteda/R/object2fixed.R | 4 quanteda-4.0.0/quanteda/R/pattern2fixed.R | 119 - quanteda-4.0.0/quanteda/R/phrases.R | 15 quanteda-4.0.0/quanteda/R/quanteda-documentation.R | 15 quanteda-4.0.0/quanteda/R/quanteda-package.R |only quanteda-4.0.0/quanteda/R/quanteda_options.R | 70 - quanteda-4.0.0/quanteda/R/texts.R | 38 quanteda-4.0.0/quanteda/R/tokenizers.R | 18 quanteda-4.0.0/quanteda/R/tokens-methods.R | 119 + quanteda-4.0.0/quanteda/R/tokens.R | 351 +++-- quanteda-4.0.0/quanteda/R/tokens_chunk.R | 16 quanteda-4.0.0/quanteda/R/tokens_compound.R | 59 quanteda-4.0.0/quanteda/R/tokens_group.R | 29 quanteda-4.0.0/quanteda/R/tokens_lookup.R | 88 + quanteda-4.0.0/quanteda/R/tokens_ngrams.R | 59 quanteda-4.0.0/quanteda/R/tokens_replace.R | 64 - quanteda-4.0.0/quanteda/R/tokens_restore.R | 36 quanteda-4.0.0/quanteda/R/tokens_sample.R | 30 quanteda-4.0.0/quanteda/R/tokens_segment.R | 23 quanteda-4.0.0/quanteda/R/tokens_select.R | 69 - quanteda-4.0.0/quanteda/R/tokens_split.R | 32 quanteda-4.0.0/quanteda/R/tokens_subset.R | 27 quanteda-4.0.0/quanteda/R/tokens_xptr.R |only quanteda-4.0.0/quanteda/R/validator.R | 13 quanteda-4.0.0/quanteda/R/wordstem.R | 18 quanteda-4.0.0/quanteda/R/zzz.R | 4 quanteda-4.0.0/quanteda/README.md | 100 - quanteda-4.0.0/quanteda/build/partial.rdb |binary quanteda-4.0.0/quanteda/build/vignette.rds |binary quanteda-4.0.0/quanteda/cleanup |only quanteda-4.0.0/quanteda/configure |only quanteda-4.0.0/quanteda/configure.ac |only quanteda-4.0.0/quanteda/inst/WORDLIST | 7 quanteda-4.0.0/quanteda/inst/doc/quickstart.R | 197 +-- quanteda-4.0.0/quanteda/inst/doc/quickstart.Rmd | 319 +---- quanteda-4.0.0/quanteda/inst/doc/quickstart.html | 626 ++++------ quanteda-4.0.0/quanteda/inst/include/lib.h | 130 +- quanteda-4.0.0/quanteda/inst/include/recompile.h | 53 quanteda-4.0.0/quanteda/inst/include/skipgram.h | 10 quanteda-4.0.0/quanteda/inst/include/tokens.h |only quanteda-4.0.0/quanteda/inst/libtbb.R |only quanteda-4.0.0/quanteda/man/apply_if.Rd |only quanteda-4.0.0/quanteda/man/as.data.frame.dfm.Rd | 6 quanteda-4.0.0/quanteda/man/as.dictionary.Rd | 9 quanteda-4.0.0/quanteda/man/as.tokens.Rd | 4 quanteda-4.0.0/quanteda/man/bootstrap_dfm.Rd | 5 quanteda-4.0.0/quanteda/man/char_select.Rd | 2 quanteda-4.0.0/quanteda/man/check_class.Rd | 2 quanteda-4.0.0/quanteda/man/check_integer.Rd | 11 quanteda-4.0.0/quanteda/man/concat.Rd |only quanteda-4.0.0/quanteda/man/convert-wrappers.Rd | 6 quanteda-4.0.0/quanteda/man/convert.Rd | 2 quanteda-4.0.0/quanteda/man/corpus-class.Rd | 2 quanteda-4.0.0/quanteda/man/corpus.Rd | 20 quanteda-4.0.0/quanteda/man/corpus_sample.Rd | 5 quanteda-4.0.0/quanteda/man/corpus_subset.Rd | 4 quanteda-4.0.0/quanteda/man/corpus_trim.Rd | 4 quanteda-4.0.0/quanteda/man/data_dictionary_LSD2015.Rd | 5 quanteda-4.0.0/quanteda/man/dfm-class.Rd | 3 quanteda-4.0.0/quanteda/man/dfm.Rd | 32 quanteda-4.0.0/quanteda/man/dfm_lookup.Rd | 3 quanteda-4.0.0/quanteda/man/dfm_match.Rd | 2 quanteda-4.0.0/quanteda/man/dfm_replace.Rd | 2 quanteda-4.0.0/quanteda/man/dfm_select.Rd | 2 quanteda-4.0.0/quanteda/man/dfm_sort.Rd | 2 quanteda-4.0.0/quanteda/man/dfm_subset.Rd | 15 quanteda-4.0.0/quanteda/man/dfm_tfidf.Rd | 6 quanteda-4.0.0/quanteda/man/dfm_trim.Rd | 12 quanteda-4.0.0/quanteda/man/dfm_weight.Rd | 9 quanteda-4.0.0/quanteda/man/dictionary-class.Rd | 2 quanteda-4.0.0/quanteda/man/dictionary.Rd | 10 quanteda-4.0.0/quanteda/man/docfreq.Rd | 4 quanteda-4.0.0/quanteda/man/docnames.Rd | 23 quanteda-4.0.0/quanteda/man/featfreq.Rd | 2 quanteda-4.0.0/quanteda/man/featnames.Rd | 2 quanteda-4.0.0/quanteda/man/figures |only quanteda-4.0.0/quanteda/man/index.Rd | 2 quanteda-4.0.0/quanteda/man/matrix2fcm.Rd | 2 quanteda-4.0.0/quanteda/man/meta_system.Rd | 2 quanteda-4.0.0/quanteda/man/ndoc.Rd | 25 quanteda-4.0.0/quanteda/man/nsentence.Rd | 9 quanteda-4.0.0/quanteda/man/ntoken.Rd | 47 quanteda-4.0.0/quanteda/man/object-builders.Rd | 8 quanteda-4.0.0/quanteda/man/object2id.Rd | 2 quanteda-4.0.0/quanteda/man/pattern.Rd | 5 quanteda-4.0.0/quanteda/man/pattern2id.Rd | 18 quanteda-4.0.0/quanteda/man/quanteda-package.Rd | 14 quanteda-4.0.0/quanteda/man/quanteda_options.Rd | 3 quanteda-4.0.0/quanteda/man/search_glob.Rd | 24 quanteda-4.0.0/quanteda/man/search_index.Rd | 2 quanteda-4.0.0/quanteda/man/sparsity.Rd | 2 quanteda-4.0.0/quanteda/man/summary_metadata.Rd | 25 quanteda-4.0.0/quanteda/man/texts.Rd | 5 quanteda-4.0.0/quanteda/man/tokens-class.Rd | 3 quanteda-4.0.0/quanteda/man/tokens.Rd | 78 - 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Title: Limited Memory BFGS Minimizer with Bounds on Parameters with
optim() 'C' Interface
Description: Interfacing to Nocedal et al. L-BFGS-B.3.0
(See <http://users.iems.northwestern.edu/~nocedal/lbfgsb.html>)
limited memory BFGS minimizer with bounds on parameters.
This is a fork of 'lbfgsb3'.
This registers a 'R' compatible 'C' interface to L-BFGS-B.3.0 that uses the same
function types and optimization as the optim() function (see writing 'R' extensions
and source for details). This package also adds more stopping criteria as well
as allowing the adjustment of more tolerances.
Author: Matthew L Fidler [aut, cre] ,
John C Nash [aut],
Ciyou Zhu [aut],
Richard Byrd [aut],
Jorge Nocedal [aut],
Jose Luis Morales [aut]
Maintainer: Matthew L Fidler <matthew.fidler@gmail.com>
Diff between lbfgsb3c versions 2024-3.3 dated 2024-04-01 and 2024-3.4 dated 2024-04-04
DESCRIPTION | 6 MD5 | 6 inst/doc/lbfgsb3c.R | 4 src/lbfgsb.f | 506 ++++++---------------------------------------------- 4 files changed, 67 insertions(+), 455 deletions(-)
Title: Spatiotemporal Arrays, Raster and Vector Data Cubes
Description: Reading, manipulating, writing and plotting
spatiotemporal arrays (raster and vector data cubes) in 'R', using 'GDAL'
bindings provided by 'sf', and 'NetCDF' bindings by 'ncmeta' and 'RNetCDF'.
Author: Edzer Pebesma [aut, cre] ,
Michael Sumner [ctb] ,
Etienne Racine [ctb],
Adriano Fantini [ctb],
David Blodgett [ctb],
Krzysztof Dyba [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between stars versions 0.6-4 dated 2023-09-11 and 0.6-5 dated 2024-04-04
stars-0.6-4/stars/tests/testthat.Rout.save |only stars-0.6-4/stars/tests/testthat/test_cubble.R |only stars-0.6-4/stars/tests/testthat/test_gdal.R |only stars-0.6-4/stars/tests/testthat/test_ncdf.R |only stars-0.6-4/stars/tests/testthat/test_ncproxy.R |only stars-0.6-4/stars/tests/testthat/test_osm.R |only stars-0.6-4/stars/tests/testthat/test_rectilinear.R |only stars-0.6-4/stars/tests/testthat/test_st_as_stars.R |only stars-0.6-4/stars/tests/testthat/test_tidy.R |only stars-0.6-4/stars/tests/testthat/test_tile.R |only stars-0.6-5/stars/DESCRIPTION | 33 +- stars-0.6-5/stars/MD5 | 233 +++++++++--------- stars-0.6-5/stars/NAMESPACE | 31 ++ stars-0.6-5/stars/NEWS.md | 48 ++- stars-0.6-5/stars/R/aggregate.R | 23 + stars-0.6-5/stars/R/datasets.R | 4 stars-0.6-5/stars/R/dimensions.R | 38 +- stars-0.6-5/stars/R/extract.R | 18 - stars-0.6-5/stars/R/geom.R | 7 stars-0.6-5/stars/R/gt.R |only stars-0.6-5/stars/R/init.R | 4 stars-0.6-5/stars/R/intervals.R | 5 stars-0.6-5/stars/R/mdim.R | 13 - stars-0.6-5/stars/R/mosaic.R | 2 stars-0.6-5/stars/R/ncdf.R | 4 stars-0.6-5/stars/R/ops.R | 2 stars-0.6-5/stars/R/plot.R | 94 +++---- stars-0.6-5/stars/R/prcomp.R |only stars-0.6-5/stars/R/proxy.R | 9 stars-0.6-5/stars/R/raster.R | 4 stars-0.6-5/stars/R/rasterize.R | 155 +++++++---- stars-0.6-5/stars/R/read.R | 3 stars-0.6-5/stars/R/rotate.R |only stars-0.6-5/stars/R/sample.R | 7 stars-0.6-5/stars/R/sf.R | 32 +- stars-0.6-5/stars/R/sp.R | 2 stars-0.6-5/stars/R/spatstat.R | 12 stars-0.6-5/stars/R/stars.R | 54 ++-- stars-0.6-5/stars/R/subset.R | 5 stars-0.6-5/stars/R/transform.R | 2 stars-0.6-5/stars/R/values.R | 1 stars-0.6-5/stars/R/warp.R | 10 stars-0.6-5/stars/R/write.R | 5 stars-0.6-5/stars/R/xts.R | 4 stars-0.6-5/stars/build/vignette.rds |binary stars-0.6-5/stars/inst/doc/stars1.Rmd | 2 stars-0.6-5/stars/inst/doc/stars1.html | 45 +-- stars-0.6-5/stars/inst/doc/stars2.R | 2 stars-0.6-5/stars/inst/doc/stars2.html | 42 +-- stars-0.6-5/stars/inst/doc/stars3.html | 30 +- stars-0.6-5/stars/inst/doc/stars4.Rmd | 2 stars-0.6-5/stars/inst/doc/stars4.html | 26 +- stars-0.6-5/stars/inst/doc/stars5.html | 2 stars-0.6-5/stars/inst/doc/stars6.R | 2 stars-0.6-5/stars/inst/doc/stars8.R | 2 stars-0.6-5/stars/inst/doc/stars8.html | 30 +- stars-0.6-5/stars/inst/docker/rdevel/Dockerfile | 2 stars-0.6-5/stars/inst/docker/trusty/Dockerfile | 2 stars-0.6-5/stars/inst/docker/ubuntu/Dockerfile | 2 stars-0.6-5/stars/inst/zarr |only stars-0.6-5/stars/man/bcsd_obs.Rd | 2 stars-0.6-5/stars/man/c.stars.Rd | 12 stars-0.6-5/stars/man/expand_dimensions.Rd |only stars-0.6-5/stars/man/figures/README-plot1-1.png |binary stars-0.6-5/stars/man/figures/README-plot2-1.png |binary stars-0.6-5/stars/man/figures/README-plot3-1.png |binary stars-0.6-5/stars/man/figures/README-plot4-1.png |binary stars-0.6-5/stars/man/figures/README-plot5-1.png |binary stars-0.6-5/stars/man/figures/README-plot6-1.png |binary stars-0.6-5/stars/man/mdim.Rd | 7 stars-0.6-5/stars/man/plot.Rd | 32 +- stars-0.6-5/stars/man/prcomp.Rd |only stars-0.6-5/stars/man/predict.stars.Rd | 6 stars-0.6-5/stars/man/print_stars.Rd | 16 - stars-0.6-5/stars/man/read_ncdf.Rd | 4 stars-0.6-5/stars/man/redimension.Rd | 18 - stars-0.6-5/stars/man/st_as_stars.Rd | 184 ++++++++------ stars-0.6-5/stars/man/st_coordinates.Rd | 5 stars-0.6-5/stars/man/st_extract.Rd | 2 stars-0.6-5/stars/man/st_geotransform.Rd |only stars-0.6-5/stars/man/st_mosaic.Rd | 2 stars-0.6-5/stars/man/st_rasterize.Rd | 9 stars-0.6-5/stars/man/st_rotate.Rd |only stars-0.6-5/stars/man/stars_sentinel2.Rd | 2 stars-0.6-5/stars/tests/aggregate.R | 2 stars-0.6-5/stars/tests/aggregate.Rout.save | 10 stars-0.6-5/stars/tests/align.Rout.save | 6 stars-0.6-5/stars/tests/area.Rout.save | 6 stars-0.6-5/stars/tests/crop.Rout.save | 6 stars-0.6-5/stars/tests/curvilinear.Rout.save | 6 stars-0.6-5/stars/tests/datasets.Rout.save | 6 stars-0.6-5/stars/tests/dimensions.Rout.save | 6 stars-0.6-5/stars/tests/downsample.R | 2 stars-0.6-5/stars/tests/downsample.Rout.save | 11 stars-0.6-5/stars/tests/ee.Rout.save | 6 stars-0.6-5/stars/tests/extract.Rout.save | 6 stars-0.6-5/stars/tests/gridtypes.Rout.save | 12 stars-0.6-5/stars/tests/mdim.R | 43 +-- stars-0.6-5/stars/tests/mdim.Rout.save | 92 ++----- stars-0.6-5/stars/tests/nc.Rout.save | 6 stars-0.6-5/stars/tests/plot.Rout.save | 6 stars-0.6-5/stars/tests/predict.Rout.save | 10 stars-0.6-5/stars/tests/proxy.Rout.save | 22 - stars-0.6-5/stars/tests/raster.Rout.save | 14 - stars-0.6-5/stars/tests/rasterize.Rout.save | 6 stars-0.6-5/stars/tests/rectilinear.Rout.save | 6 stars-0.6-5/stars/tests/redimension.Rout.save | 6 stars-0.6-5/stars/tests/sf.Rout.save | 6 stars-0.6-5/stars/tests/sp.Rout.save | 11 stars-0.6-5/stars/tests/spacetime.Rout.save | 6 stars-0.6-5/stars/tests/spatstat.Rout.save | 6 stars-0.6-5/stars/tests/stars.R | 2 stars-0.6-5/stars/tests/stars.Rout.save | 28 -- stars-0.6-5/stars/tests/subset.Rout.save | 6 stars-0.6-5/stars/tests/testthat/test-OpenStreetMap.R |only stars-0.6-5/stars/tests/testthat/test-cubble.R |only stars-0.6-5/stars/tests/testthat/test-gdal.R |only stars-0.6-5/stars/tests/testthat/test-ncdf.R |only stars-0.6-5/stars/tests/testthat/test-ncproxy.R |only stars-0.6-5/stars/tests/testthat/test-rectilinear.R |only stars-0.6-5/stars/tests/testthat/test-stars.R |only stars-0.6-5/stars/tests/testthat/test-tidyverse.R |only stars-0.6-5/stars/tests/testthat/test-tile.R |only stars-0.6-5/stars/tests/tidy.Rout.save | 6 stars-0.6-5/stars/tests/transform.R | 22 - stars-0.6-5/stars/tests/transform.Rout.save | 70 ++--- stars-0.6-5/stars/tests/warp.R | 6 stars-0.6-5/stars/tests/warp.Rout.save | 22 - stars-0.6-5/stars/tests/write.Rout.save | 6 stars-0.6-5/stars/vignettes/stars1.Rmd | 2 stars-0.6-5/stars/vignettes/stars4.Rmd | 2 131 files changed, 1005 insertions(+), 848 deletions(-)
Title: Hybrid Genetic and Simulated Annealing Algorithm for High
Dimensional Linear Models with Interaction Effects
Description: We provide a stage-wise selection method using genetic algorithms, designed to efficiently identify main and two-way interactions within high-dimensional linear regression models. Additionally, it implements simulated annealing algorithm during the mutation process. The relevant paper can be found at: Ye, C.,and Yang,Y. (2019) <doi:10.1109/TIT.2019.2913417>.
Author: Leiyue Li [aut, cre],
Chenglong Ye [aut]
Maintainer: Leiyue Li <lli289.git@gmail.com>
Diff between hySAINT versions 1.2.0 dated 2024-03-12 and 1.2.1 dated 2024-04-04
DESCRIPTION | 11 ++++++----- MD5 | 4 ++-- R/Extract.R | 11 ++++++++--- 3 files changed, 16 insertions(+), 10 deletions(-)
Title: Finite Mixture Parametrization
Description: A parametrization framework for finite mixture
distribution using S4 objects. Density, cumulative
density, quantile and simulation functions are defined.
Currently normal, Tukey g-&-h, skew-normal and skew-t
distributions are well tested. The gamma, negative
binomial distributions are being tested.
Author: Tingting Zhan [aut, cre, cph] ,
Inna Chervoneva [ctb]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between fmx versions 0.1.0 dated 2024-03-25 and 0.1.1 dated 2024-04-04
DESCRIPTION | 34 +++++++++++++++------------- MD5 | 27 +++++++++++----------- NAMESPACE | 3 ++ NEWS.md | 4 +++ R/0S4.R | 7 ----- R/Kolmogorov_dist.R | 3 -- R/as.fmx.R | 9 ++----- R/fmx.R | 58 +++++++++++++++++++++++++++++-------------------- R/fmx_diagnosis.R | 2 - R/fmx_repar.R | 7 +---- R/mixtools.R | 2 + man/Kolmogorov_dist.Rd | 3 -- man/fmx-class.Rd | 2 - man/fmx2dbl.Rd | 2 - man/qfmx_interval.Rd |only 15 files changed, 83 insertions(+), 80 deletions(-)
Title: Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io',
and 'RPubs'
Description: Programmatic deployment interface for 'RPubs',
'shinyapps.io', and 'Posit Connect'. Supported content types include R
Markdown documents, Shiny applications, Plumber APIs, plots, and
static web content.
Author: Aron Atkins [aut, cre],
Toph Allen [aut],
Hadley Wickham [aut],
Jonathan McPherson [aut],
JJ Allaire [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Aron Atkins <aron@posit.co>
Diff between rsconnect versions 1.2.1 dated 2024-01-31 and 1.2.2 dated 2024-04-04
DESCRIPTION | 10 +++---- MD5 | 28 +++++++++---------- NEWS.md | 7 ++++ R/appDependencies.R | 6 +++- R/appMetadata.R | 50 +++++++++++++++++++++++++++-------- R/bundle.R | 35 ++++++++++++++++-------- R/deployApp.R | 4 ++ R/http.R | 18 ++++++++++-- R/writeManifest.R | 3 +- build/vignette.rds |binary inst/doc/custom-http.html | 2 - tests/testthat/_snaps/appMetadata.md | 26 +++++++++++++++--- tests/testthat/_snaps/http.md | 2 - tests/testthat/test-appMetadata.R | 40 +++++++++++++++++++++++++--- tests/testthat/test-http.R | 50 +++++++++++++++++++++++++++++++++-- 15 files changed, 222 insertions(+), 59 deletions(-)
Title: Accesses Weather Data from the Iowa Environment Mesonet
Description: Allows to get weather data from Automated Surface Observing
System (ASOS) stations (airports) in the whole world thanks to the
Iowa Environment Mesonet website.
Author: Maelle Salmon [aut, cre] ,
Brooke Anderson [rev] ,
CHAI Project [fnd] ,
rOpenSci [fnd] ,
Daryl Herzmann [ctb]
Maintainer: Maelle Salmon <maelle.salmon@yahoo.se>
Diff between riem versions 0.3.0 dated 2022-02-08 and 0.3.1 dated 2024-04-04
riem-0.3.0/riem/tests/testthat/fixtures/measures/mesonet.agron.iastate.edu/cgi-bin/request/asos.py-543bf3.txt |only riem-0.3.1/riem/DESCRIPTION | 12 - riem-0.3.1/riem/MD5 | 32 ++-- riem-0.3.1/riem/NEWS.md | 8 + riem-0.3.1/riem/R/measures.R | 69 ++++++---- riem-0.3.1/riem/R/networks.R | 11 - riem-0.3.1/riem/R/stations.R | 28 ++-- riem-0.3.1/riem/R/utils.R | 2 riem-0.3.1/riem/man/riem_measures.Rd | 30 +++- riem-0.3.1/riem/man/riem_networks.Rd | 3 riem-0.3.1/riem/man/riem_stations.Rd | 11 + riem-0.3.1/riem/tests/testthat/_snaps/measures.md | 10 - riem-0.3.1/riem/tests/testthat/_snaps/stations.md | 7 - riem-0.3.1/riem/tests/testthat/fixtures/measures/mesonet.agron.iastate.edu/cgi-bin/request/asos.py-f4a399.txt |only riem-0.3.1/riem/tests/testthat/fixtures/networks-error/mesonet.agron.iastate.edu/api/1/networks.json.R | 14 +- riem-0.3.1/riem/tests/testthat/test-measures.R | 10 - riem-0.3.1/riem/tests/testthat/test-networks.R | 7 - riem-0.3.1/riem/tests/testthat/test-stations.R | 5 18 files changed, 151 insertions(+), 108 deletions(-)
Title: Correction Factors for Tree Plot Areas Intersected by Stand
Boundaries
Description: The German national forest inventory uses angle count sampling,
a sampling method first published as `Bitterlich, W.: Die Winkelzählmessung.
Allgemeine Forst- und Holzwirtschaftliche Zeitung, 58. Jahrg., Folge 11/12
vom Juni 1947` and extended by Grosenbaugh
(<https://academic.oup.com/jof/article-abstract/50/1/32/4684174>)
as probability proportional to size sampling.
When plots are located near stand boundaries, their sizes and hence
their probabilities need to be corrected.
Author: Andreas Dominik Cullmann [aut, cre],
Bernhard Boesch [ctb],
Christoph Fischer [ctb],
Gerald Kaendler [ctb]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between treePlotArea versions 2.0.0 dated 2024-01-29 and 2.1.0 dated 2024-04-04
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 7 +++++++ R/get_boundary_radius.R | 7 ++++++- R/get_correction_factors.R | 21 ++++++++++++++------- inst/NEWS.rd | 8 ++++++++ inst/doc/An_Introduction_to_treePlotArea.pdf |binary inst/runit_tests/runit-get_boundary_radius.R | 20 ++++++++++++++++++-- inst/tinytest/test_check_boundaries.R | 2 +- man/get_boundary_radius.Rd | 10 +++++++++- man/get_correction_factors.Rd | 9 +++++++-- man/treePlotArea-package.Rd | 19 +++++++++++++++++++ 12 files changed, 104 insertions(+), 29 deletions(-)
Title: Fitting (Exponential/Diffusion) RT-MPT Models
Description: Fit (exponential or diffusion) response-time extended multinomial processing tree (RT-MPT) models
by Klauer and Kellen (2018) <doi:10.1016/j.jmp.2017.12.003> and Klauer, Hartmann, and Meyer-Grant (submitted).
The RT-MPT class not only incorporate frequencies like traditional multinomial processing tree (MPT) models,
but also latencies. This enables it to estimate process completion times and encoding plus motor execution times
next to the process probabilities of traditional MPTs. 'rtmpt' is a hierarchical Bayesian framework and posterior
samples are sampled using a Metropolis-within-Gibbs sampler (for exponential RT-MPTs) or Hamiltonian-within-Gibbs
sampler (for diffusion RT-MPTs).
Author: Raphael Hartmann [aut, cre],
Karl C. Klauer [cph, aut, ctb, ths],
Constantin G. Meyer-Grant [aut, ctb],
Henrik Singmann [ctb, aut],
Jean Marie Linhart [ctb],
Frederick Novomestky [ctb]
Maintainer: Raphael Hartmann <raphael.hartmann@protonmail.com>
Diff between rtmpt versions 2.0-0 dated 2023-12-13 and 2.0-1 dated 2024-04-04
DESCRIPTION | 6 MD5 | 18 +- R/call_rtmpt.R | 8 - R/print_rtmpt.R | 2 build/vignette.rds |binary inst/doc/rtmpt_guideline.R | 50 +++--- inst/doc/rtmpt_guideline.html | 318 +++++++++++++++++++++--------------------- src/main.cpp | 15 - src/r_wrapper.cpp | 31 ++-- src/specifics.cpp | 7 10 files changed, 227 insertions(+), 228 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-01 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-18 0.1.4.2
2024-02-14 0.1.4.1
Title: Turn Vectors and Lists of Vectors into Indexed Structures
Description: Package designed for working with vectors and lists of vectors,
mainly for turning them into other indexed data structures.
Author: Frederic Bertrand [cre] ,
Gaston Sanchez [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@utt.fr>
Diff between turner versions 0.1.7 dated 2014-02-17 and 0.1.9 dated 2024-04-04
turner-0.1.7/turner/R/turner-package.r |only turner-0.1.7/turner/man/turner-package.Rd |only turner-0.1.9/turner/DESCRIPTION | 29 ++++++--- turner-0.1.9/turner/MD5 | 16 ++--- turner-0.1.9/turner/R/turner.r |only turner-0.1.9/turner/build/vignette.rds |binary turner-0.1.9/turner/inst/doc/turner_introduction.R | 53 ++++++------------ turner-0.1.9/turner/inst/doc/turner_introduction.Rnw | 8 +- turner-0.1.9/turner/inst/doc/turner_introduction.pdf |binary turner-0.1.9/turner/man/turner.Rd |only turner-0.1.9/turner/vignettes/turner_introduction.Rnw | 8 +- 11 files changed, 55 insertions(+), 59 deletions(-)
Title: Tests and Checks Characteristics of R Objects
Description: Allows users to test characteristics of common R objects.
Author: Frederic Bertrand [cre] ,
Gaston Sanchez [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@utt.fr>
Diff between tester versions 0.1.7 dated 2013-11-14 and 0.2.0 dated 2024-04-04
DESCRIPTION | 31 ++++++++++++++++--------- MD5 | 27 ++++++++++++---------- NAMESPACE | 5 ++++ R/is-one-dim.r | 46 ++++++++++++++++++++++++++++++++++++++ R/is-single.r | 4 ++- R/is_rectangular_matrix.r |only R/is_square_matrix.r | 3 +- build/vignette.rds |binary inst/doc/tester_introduction.R | 36 ++++++++++------------------- inst/doc/tester_introduction.Rnw | 13 ++++++---- inst/doc/tester_introduction.pdf |binary man/is_multidim.Rd |only man/is_one_dim.Rd | 3 ++ man/is_rectangular_matrix.Rd |only man/is_square_matrix.Rd | 4 ++- vignettes/tester_introduction.Rnw | 13 ++++++---- 16 files changed, 126 insertions(+), 59 deletions(-)
Title: Cryptographic Hash and Extendable-Output Functions
Description: Fast and memory-efficient streaming hash functions. Performs direct
hashing of strings, raw bytes, and files potentially larger than memory, as
well as hashing in-memory objects through R's serialization mechanism,
without requiring allocation of the serialized object. Implementations
include the SHA-256 and SHA-3 cryptographic hash functions, SHAKE256
extendable-output function (XOF), and 'SipHash' pseudo-random function. The
SHA-3 Secure Hash Standard was published by the National Institute of
Standards and Technology (NIST) in 2015 at <doi:10.6028/NIST.FIPS.202>. The
SHA-256 Secure Hash Standard was published by NIST in 2002 at
<https://csrc.nist.gov/publications/fips/fips180-2/fips180-2.pdf>.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between secretbase versions 0.3.0.1 dated 2024-03-01 and 0.4.0 dated 2024-04-04
DESCRIPTION | 25 ++++---- MD5 | 30 +++++----- NAMESPACE | 1 NEWS.md | 5 + R/base.R | 130 +++++++++++++++++++++++++++++++++++----------- README.md | 111 ++++++++++++++++++++++++++++----------- build/partial.rdb |binary man/secretbase-package.Rd | 21 ++----- man/sha256.Rd | 41 ++++++++++---- man/sha3.Rd | 30 ++++++---- man/siphash13.Rd |only src/init.c | 6 +- src/secret.c | 2 src/secret.h | 28 +++++++++ src/secret2.c | 108 +++++++++++++++++++++++++++++--------- src/secret3.c |only tests/tests.R | 42 ++++++++++++++ 17 files changed, 426 insertions(+), 154 deletions(-)
Title: Extension of the 'rgl' 3D Visualization Package
Description: Provides 3D plotting routines that facilitate the use of the 'rgl' package and extend its functionality. For example, the routines allow the user to directly control the camera position & orientation, as well as to generate 3D movies with a moving observer.
Author: Danail Obreschkow
Maintainer: Danail Obreschkow <danail.obreschkow@gmail.com>
Diff between rglplus versions 1.1 dated 2023-01-21 and 1.3 dated 2024-04-04
rglplus-1.1/rglplus/man/rglplus.Rd |only rglplus-1.3/rglplus/DESCRIPTION | 8 ++++---- rglplus-1.3/rglplus/MD5 | 8 ++++---- rglplus-1.3/rglplus/R/rgl.test.scene.R | 2 +- rglplus-1.3/rglplus/R/rglplus-package.R | 3 +-- rglplus-1.3/rglplus/man/rglplus-package.Rd |only 6 files changed, 10 insertions(+), 11 deletions(-)
Title: Markov Chain Gaussian Fields Simulation and Parameter Estimation
Description: Simulating and estimating (regime-switching) Markov chain Gaussian
fields with covariance functions of the Gneiting class (Gneiting 2002)
<doi:10.1198/016214502760047113>. It supports parameter estimation by
weighted least squares and maximum likelihood methods, and produces Kriging
forecasts and intervals for existing and new locations.
Author: Tianxia Jia [aut, cre, cph]
Maintainer: Tianxia Jia <tianxia.jia@ucalgary.ca>
Diff between mcgf versions 1.0.1 dated 2024-02-19 and 1.1.0 dated 2024-04-04
DESCRIPTION | 16 +++--- MD5 | 114 +++++++++++++++++++++++++------------------- NAMESPACE | 5 + NEWS.md | 39 ++++++++++++++- R/add_base.R | 15 ++++- R/add_lagr.R | 3 + R/cor_lagr_exp.R |only R/dists.R | 44 ++++++++++++++++- R/find_dists.R | 82 ++++++++++++++++++++++++++++---- R/find_dists_new.R |only R/fit_base.R | 6 +- R/fit_lagr.R | 10 ++- R/krige.R | 66 ++++++++++++++----------- R/krige_new.R |only R/mcgf.R | 54 ++++++++++++++------- R/mcgf_rs.R | 28 ++++++----- R/simulation.R | 68 ++++++++++++++------------ README.md | 2 build/vignette.rds |binary data/sim1.rda |binary data/sim2.rda |binary data/sim3.rda |binary data/wind.rda |binary inst/doc/mcgf.R | 19 ++++++- inst/doc/mcgf.Rmd | 30 +++++++++-- inst/doc/mcgf.html | 117 +++++++++++++++++++++++++++++++--------------- inst/doc/mcgf_rs.R |only inst/doc/mcgf_rs.Rmd |only inst/doc/mcgf_rs.html |only man/add_base.mcgf.Rd | 3 - man/add_base.mcgf_rs.Rd | 9 +-- man/add_lagr.mcgf.Rd | 3 - man/add_lagr.mcgf_rs.Rd | 3 - man/cor_cauchy.Rd | 5 + man/cor_exp.Rd | 5 + man/cor_fs.Rd | 5 + man/cor_lagr_askey.Rd | 5 + man/cor_lagr_exp.Rd |only man/cor_lagr_tri.Rd | 5 + man/cor_sep.Rd | 5 + man/cor_stat.Rd | 1 man/cor_stat_rs.Rd | 1 man/dists.mcgf.Rd | 18 ++++++- man/dot-cor_lagr_exp.Rd |only man/dot-find_dists.Rd | 22 ++++++++ man/dot-find_dists_new.Rd |only man/find_dists.Rd | 27 +++++++++- man/find_dists_new.Rd |only man/fit_base.mcgf.Rd | 3 - man/fit_base.mcgf_rs.Rd | 9 +-- man/fit_lagr.mcgf.Rd | 8 +-- man/fit_lagr.mcgf_rs.Rd | 5 + man/krige.mcgf.Rd | 7 +- man/krige.mcgf_rs.Rd | 11 ++-- man/krige_new.Rd |only man/krige_new.mcgf.Rd |only man/krige_new.mcgf_rs.Rd |only man/mcgf.Rd | 31 +++++++----- man/mcgf_rs.Rd | 25 ++++++--- man/new_mcgf.Rd | 17 ++++-- man/sim1.Rd | 18 +++---- man/sim2.Rd | 27 ++++++---- man/sim3.Rd | 23 +++++---- vignettes/mcgf.Rmd | 30 +++++++++-- vignettes/mcgf_rs.Rmd |only 65 files changed, 732 insertions(+), 317 deletions(-)
Title: Core Functions for Data Quality Assessment
Description: Perform data quality assessment ('DQA') of electronic health
records ('EHR'). Publication: Kapsner et al. (2021)
<doi:10.1055/s-0041-1733847>.
Author: Lorenz A. Kapsner [cre, aut] ,
Jonathan M. Mang [aut] ,
MIRACUM - Medical Informatics in Research and Care in University
Medicine [fnd],
Universitaetsklinikum Erlangen [cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between DQAstats versions 0.3.3 dated 2023-07-20 and 0.3.4 dated 2024-04-04
DESCRIPTION | 9 MD5 | 28 R/DQA.R | 1030 +++++++++++------------ R/completeness.R | 358 ++++---- R/conformance.R | 1528 +++++++++++++++++------------------ R/descriptive_results.R | 580 ++++++------- R/etl.R | 372 ++++---- R/format_value_conformance_results.R | 482 +++++------ R/plausibility_results.R | 1434 ++++++++++++++++---------------- R/reduce_cat.R | 328 +++---- build/vignette.rds |binary inst/doc/DQAstats2SHIPdataset.R | 26 inst/doc/DQAstats2SHIPdataset.Rmd | 24 inst/doc/DQAstats2SHIPdataset.html | 938 ++++++++------------- vignettes/DQAstats2SHIPdataset.Rmd | 24 15 files changed, 3481 insertions(+), 3680 deletions(-)
Title: Fetch Zonal Statistics of Weather Indicators for Brazilian
Municipalities
Description: Fetches zonal statistics from weather indicators that were calculated for each municipality in Brazil using data from the BR-DWGD and TerraClimate projects.
Zonal statistics such as mean, maximum, minimum, standard deviation, and sum were computed by taking into account the data cells that intersect the boundaries of each municipality and stored in Parquet files. This procedure was carried out for all Brazilian municipalities, and for all available dates, for every indicator available in the weather products (BR-DWGD and TerraClimate projects). This package queries on-line the already calculated statistics on the Parquet files and returns easy-to-use data.frames.
Author: Raphael Saldanha [aut, cre] ,
Reza Akbarinia [aut],
Patrick Valduriez [aut],
Marcel Pedroso [aut],
Victor Ribeiro [aut],
Carlos Cardoso [aut],
Eduardo Pena [aut],
Fabio Porto [aut]
Maintainer: Raphael Saldanha <raphael.de-freitas-saldanha@inria.fr>
Diff between brclimr versions 0.1.2 dated 2023-03-14 and 0.2.0 dated 2024-04-04
DESCRIPTION | 10 +++--- MD5 | 18 +++++------ NEWS.md | 5 ++- R/fetch_data.R | 47 +++++++++++++++---------------- README.md | 32 ++++++--------------- data/brdwgd_data.rda |binary data/terraclimate_data.rda |binary inst/WORDLIST | 28 +++++++++++++----- man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary 10 files changed, 71 insertions(+), 69 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-06 0.4-5
2022-09-03 0.4-4
2019-04-23 0.4-3
2018-04-20 0.4-1
2017-08-14 0.4-0
2017-03-14 0.3-3
2015-07-21 0.3-2
2014-11-01 0.3-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-07 3.0-9
2022-09-03 3.0-8
2021-01-06 3.0-7
2018-04-18 3.0-5
2017-03-15 3.0-4
2015-07-20 3.0-3
2014-06-22 3.0-2
2014-01-31 3.0-0
2014-01-31 3.0-1
2012-07-06 2.0-0
2012-04-04 1.1-0
2012-02-19 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-29 2.0
2015-10-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-10 1.2.3
Title: Taxonomic List Processing
Description: Taxonomic lists matching and merging, casting and melting
scientific names, managing taxonomic lists from Global Biodiversity
Information Facility 'GBIF' or Integrated Taxonomic Information System 'ITIS',
harvesting names from Wikipedia and fuzzy matching.
Author: Vijay Barve [aut, cre]
Maintainer: Vijay Barve <vijay.barve@gmail.com>
Diff between taxotools versions 0.0.132 dated 2023-01-23 and 0.0.139 dated 2024-04-04
taxotools-0.0.132/taxotools/R/taxotools.R |only taxotools-0.0.132/taxotools/man/taxotools.Rd |only taxotools-0.0.139/taxotools/DESCRIPTION | 10 +-- taxotools-0.0.139/taxotools/MD5 | 44 ++++++++-------- taxotools-0.0.139/taxotools/NEWS | 7 ++ taxotools-0.0.139/taxotools/R/get_accepted_names.R | 4 - taxotools-0.0.139/taxotools/R/get_synonyms.R | 23 ++++---- taxotools-0.0.139/taxotools/R/guess_taxo_rank.R | 2 taxotools-0.0.139/taxotools/R/list_higher_taxo.R | 7 +- taxotools-0.0.139/taxotools/R/list_wiki_syn.R | 8 +-- taxotools-0.0.139/taxotools/R/melt_canonical.R | 41 +++++++++------ taxotools-0.0.139/taxotools/R/melt_scientificname.R | 9 +-- taxotools-0.0.139/taxotools/R/merge_lists.R | 4 - taxotools-0.0.139/taxotools/R/syn2taxo.R | 48 ++++++++++++------ taxotools-0.0.139/taxotools/R/taxo2doc.R | 8 +-- taxotools-0.0.139/taxotools/R/taxotools-package.R |only taxotools-0.0.139/taxotools/man/get_accepted_names.Rd | 4 - taxotools-0.0.139/taxotools/man/get_synonyms.Rd | 20 +++---- taxotools-0.0.139/taxotools/man/guess_taxo_rank.Rd | 2 taxotools-0.0.139/taxotools/man/list_higher_taxo.Rd | 4 - taxotools-0.0.139/taxotools/man/list_wiki_syn.Rd | 8 +-- taxotools-0.0.139/taxotools/man/merge_lists.Rd | 4 - taxotools-0.0.139/taxotools/man/syn2taxo.Rd | 13 +++- taxotools-0.0.139/taxotools/man/taxo2doc.Rd | 8 +-- taxotools-0.0.139/taxotools/man/taxotools-package.Rd |only 25 files changed, 162 insertions(+), 116 deletions(-)
Title: Cache 'CRAN'-Like Metadata and R Packages
Description: Metadata and package cache for CRAN-like repositories. This
is a utility package to be used by package management tools that want
to take advantage of caching.
Author: Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pkgcache versions 2.2.1 dated 2023-12-10 and 2.2.2 dated 2024-04-04
DESCRIPTION | 8 MD5 | 20 +- NEWS.md | 5 R/aaa-async.R | 263 +++++++++++++++++++++++++++++-- R/platform.R | 12 + tests/async/_snaps/http-sse.md |only tests/async/_snaps/http.md |only tests/async/test-event-emitter-async.R | 8 tests/async/test-event-emitter.R | 2 tests/async/test-http-events.R |only tests/async/test-http-sse.R |only tests/async/test-http.R | 24 ++ tests/testthat/_snaps/macos-platforms.md |only tests/testthat/test-macos-platforms.R |only 14 files changed, 310 insertions(+), 32 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-18 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-01 0.10.4
2022-11-16 0.10.3
Title: Tools for HTML
Description: Tools for HTML generation and output.
Author: Joe Cheng [aut],
Carson Sievert [aut, cre] ,
Barret Schloerke [aut] ,
Winston Chang [aut] ,
Yihui Xie [aut],
Jeff Allen [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Carson Sievert <carson@posit.co>
Diff between htmltools versions 0.5.8 dated 2024-03-25 and 0.5.8.1 dated 2024-04-04
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/images.R | 14 +++++++------- man/capturePlot.Rd | 9 +++++---- man/plotTag.Rd | 7 ++++--- 6 files changed, 28 insertions(+), 22 deletions(-)
Title: Easy Management of File Names
Description: Create descriptive file names with ease. New file names are
automatically (but optionally) time stamped and placed in date stamped
directories. Streamline your analysis pipeline with input and output file
names that have informative tags and proper file extensions.
Author: David J. H. Shih
Maintainer: David J. H. Shih <djh.shih@gmail.com>
Diff between filenamer versions 0.2.3 dated 2018-05-06 and 0.2.4 dated 2024-04-04
DESCRIPTION | 10 +++++----- MD5 | 36 +++++++++++++++++++----------------- NAMESPACE | 2 +- R/filename.R | 25 +------------------------ R/filenamer-package.R |only R/insert.R | 2 +- R/tag.R | 2 +- man/as.character.filename.Rd | 4 ++-- man/as.filename.Rd | 6 +++--- man/filename.Rd | 43 ++++++++++++++++--------------------------- man/filenamer-package.Rd |only man/insert.Rd | 21 ++++++++++++++------- man/is.filename.Rd | 3 +-- man/make_path.Rd | 10 +++++----- man/set_fdate.Rd | 4 ++-- man/set_fext.Rd | 4 ++-- man/set_fpath.Rd | 4 ++-- man/set_ftime.Rd | 6 +++--- man/tag.Rd | 6 +++--- man/trim_ext.Rd | 4 ++-- 20 files changed, 83 insertions(+), 109 deletions(-)
Title: A Wrapper of the JavaScript Library 'DataTables'
Description: Data objects in R can be rendered as HTML tables using the
JavaScript library 'DataTables' (typically via R Markdown or Shiny). The
'DataTables' library has been included in this R package. The package name
'DT' is an abbreviation of 'DataTables'.
Author: Yihui Xie [aut],
Joe Cheng [aut, cre],
Xianying Tan [aut],
JJ Allaire [ctb],
Maximilian Girlich [ctb],
Greg Freedman Ellis [ctb],
Johannes Rauh [ctb],
SpryMedia Limited [ctb, cph] ,
Brian Reavis [ctb, cph] ,
Leon Gersen [ctb, cph] ,
Bartek Szopka [ct [...truncated...]
Maintainer: Joe Cheng <joe@posit.co>
Diff between DT versions 0.32 dated 2024-02-19 and 0.33 dated 2024-04-04
DESCRIPTION | 16 ++++++++-------- MD5 | 14 +++++++------- R/shiny.R | 36 +++++++++++++++++++++++++----------- build/vignette.rds |binary inst/doc/DT.html | 11 +++++++---- inst/htmlwidgets/datatables.js | 3 +++ man/dataTableAjax.Rd | 6 +++--- man/dataTableOutput.Rd | 25 ++++++++++++++++--------- 8 files changed, 69 insertions(+), 42 deletions(-)
Title: Graph Theory Analysis of Brain MRI Data
Description: A set of tools for performing graph theory analysis of brain MRI
data. It works with data from a Freesurfer analysis (cortical thickness,
volumes, local gyrification index, surface area), diffusion tensor
tractography data (e.g., from FSL) and resting-state fMRI data (e.g., from
DPABI). It contains a graphical user interface for graph visualization and
data exploration, along with several functions for generating useful
figures.
Author: Christopher G. Watson [aut, cre]
Maintainer: Christopher G. Watson <cgwatson@bu.edu>
Diff between brainGraph versions 3.0.0 dated 2020-09-29 and 3.1.0 dated 2024-04-04
brainGraph-3.0.0/brainGraph/R/plot_brainGraph_gui.R |only brainGraph-3.0.0/brainGraph/R/update_brainGraph_gui.R |only brainGraph-3.0.0/brainGraph/man/plot_brainGraph_gui.Rd |only brainGraph-3.1.0/brainGraph/DESCRIPTION | 21 +- brainGraph-3.1.0/brainGraph/MD5 | 118 ++++++-------- brainGraph-3.1.0/brainGraph/NAMESPACE | 1 brainGraph-3.1.0/brainGraph/NEWS.md | 37 ++++ brainGraph-3.1.0/brainGraph/R/NBS.R | 2 brainGraph-3.1.0/brainGraph/R/brainGraph_mediate.R | 10 - brainGraph-3.1.0/brainGraph/R/centr_lev.R | 2 brainGraph-3.1.0/brainGraph/R/communicability.R | 6 brainGraph-3.1.0/brainGraph/R/create_mats.R | 11 - brainGraph-3.1.0/brainGraph/R/data.R | 22 +- brainGraph-3.1.0/brainGraph/R/data_tables.R | 20 +- brainGraph-3.1.0/brainGraph/R/get_resid.R | 45 ++++- brainGraph-3.1.0/brainGraph/R/glm_randomise.R | 12 - brainGraph-3.1.0/brainGraph/R/graph_efficiency.R | 4 brainGraph-3.1.0/brainGraph/R/hubs.R | 2 brainGraph-3.1.0/brainGraph/R/import.R | 2 brainGraph-3.1.0/brainGraph/R/individ_contrib.R | 2 brainGraph-3.1.0/brainGraph/R/mtpc.R | 4 brainGraph-3.1.0/brainGraph/R/random_graphs.R | 8 brainGraph-3.1.0/brainGraph/R/rich_club.R | 8 brainGraph-3.1.0/brainGraph/R/robustness.R | 2 brainGraph-3.1.0/brainGraph/R/s_core.R | 2 brainGraph-3.1.0/brainGraph/R/set_brainGraph_attributes.R | 6 brainGraph-3.1.0/brainGraph/R/small_world.R | 2 brainGraph-3.1.0/brainGraph/R/spatial_dist.R | 2 brainGraph-3.1.0/brainGraph/R/utils.R | 11 - brainGraph-3.1.0/brainGraph/R/vertex_roles.R | 70 +++++--- brainGraph-3.1.0/brainGraph/R/vulnerability.R | 2 brainGraph-3.1.0/brainGraph/R/write_brainnet.R | 2 brainGraph-3.1.0/brainGraph/R/zzz.R | 5 brainGraph-3.1.0/brainGraph/build |only brainGraph-3.1.0/brainGraph/man/NBS.Rd | 2 brainGraph-3.1.0/brainGraph/man/apply_thresholds.Rd | 7 brainGraph-3.1.0/brainGraph/man/brain_atlases.Rd | 22 +- brainGraph-3.1.0/brainGraph/man/centr_betw_comm.Rd | 2 brainGraph-3.1.0/brainGraph/man/centr_lev.Rd | 2 brainGraph-3.1.0/brainGraph/man/communicability.Rd | 4 brainGraph-3.1.0/brainGraph/man/cor.diff.test.Rd | 3 brainGraph-3.1.0/brainGraph/man/create_mats.Rd | 4 brainGraph-3.1.0/brainGraph/man/efficiency.Rd | 4 brainGraph-3.1.0/brainGraph/man/glm_graph_plots.Rd | 1 brainGraph-3.1.0/brainGraph/man/hubness.Rd | 2 brainGraph-3.1.0/brainGraph/man/individ_contrib.Rd | 2 brainGraph-3.1.0/brainGraph/man/mediation.Rd | 10 - brainGraph-3.1.0/brainGraph/man/mtpc.Rd | 2 brainGraph-3.1.0/brainGraph/man/plot.brainGraph.Rd | 1 brainGraph-3.1.0/brainGraph/man/plot.brainGraphList.Rd | 1 brainGraph-3.1.0/brainGraph/man/plot_brainGraph_multi.Rd | 3 brainGraph-3.1.0/brainGraph/man/random_graphs.Rd | 4 brainGraph-3.1.0/brainGraph/man/randomise.Rd | 8 brainGraph-3.1.0/brainGraph/man/rich_club.Rd | 8 brainGraph-3.1.0/brainGraph/man/robustness.Rd | 2 brainGraph-3.1.0/brainGraph/man/s_core.Rd | 2 brainGraph-3.1.0/brainGraph/man/small.world.Rd | 2 brainGraph-3.1.0/brainGraph/man/spatial_dist.Rd | 2 brainGraph-3.1.0/brainGraph/man/utils.Rd | 8 brainGraph-3.1.0/brainGraph/man/vertex_roles.Rd | 15 + brainGraph-3.1.0/brainGraph/man/vulnerability.Rd | 2 brainGraph-3.1.0/brainGraph/man/write_brainnet.Rd | 2 62 files changed, 319 insertions(+), 249 deletions(-)
Title: Command-Line Argument Parser
Description: Cross-platform command-line argument parser written purely in R
with no external dependencies. It is useful with the Rscript
front-end and facilitates turning an R script into an executable script.
Author: David J. H. Shih
Maintainer: David J. H. Shih <djh.shih@gmail.com>
Diff between argparser versions 0.7.1 dated 2021-03-08 and 0.7.2 dated 2024-04-04
argparser-0.7.1/argparser/man/argparser.Rd |only argparser-0.7.2/argparser/DESCRIPTION | 10 +-- argparser-0.7.2/argparser/MD5 | 12 ++-- argparser-0.7.2/argparser/R/argparser-package.R |only argparser-0.7.2/argparser/R/argparser.R | 56 ++++++++------------- argparser-0.7.2/argparser/demo/00Index | 1 argparser-0.7.2/argparser/demo/underscore.R |only argparser-0.7.2/argparser/man/argparser-package.Rd |only argparser-0.7.2/argparser/man/parse_args.Rd | 7 +- 9 files changed, 41 insertions(+), 45 deletions(-)
Title: Who are You? Bayesian Prediction of Racial Category Using
Surname, First Name, Middle Name, and Geolocation
Description: Predicts individual race/ethnicity using surname, first name,
middle name, geolocation, and other attributes, such as gender and
age. The method utilizes Bayes' Rule (with optional measurement error
correction) to compute the posterior probability of each racial
category for any given individual. The package implements methods
described in Imai and Khanna (2016) "Improving Ecological Inference by
Predicting Individual Ethnicity from Voter Registration Records"
Political Analysis <DOI:10.1093/pan/mpw001> and Imai, Olivella, and
Rosenman (2022) "Addressing census data problems in race imputation
via fully Bayesian Improved Surname Geocoding and name supplements"
<DOI:10.1126/sciadv.adc9824>. The package also incorporates the data
described in Rosenman, Olivella, and Imai (2023) "Race and ethnicity
data for first, middle, and surnames"
<DOI:10.1038/s41597-023-02202-2>.
Author: Kabir Khanna [aut],
Brandon Bertelsen [aut, cre],
Santiago Olivella [aut],
Evan Rosenman [aut],
Alexander Rossell Hayes [aut],
Kosuke Imai [aut]
Maintainer: Brandon Bertelsen <brandon@bertelsen.ca>
Diff between wru versions 3.0.1 dated 2024-02-27 and 3.0.2 dated 2024-04-04
DESCRIPTION | 12 MD5 | 12 R/census_geo_api_names.R | 72 + tests/testthat/_snaps/census_geo_api.md | 1237 +++++++++++++++++++++-------- tests/testthat/test-census_geo_api.R | 49 + tests/testthat/test-census_geo_api_names.R | 432 +++++----- tests/testthat/test-get_census_data.R | 9 7 files changed, 1240 insertions(+), 583 deletions(-)