Title: Structural Equation Modeling and Twin Modeling in R
Description: Quickly create, run, and report structural equation models, and twin models.
See '?umx' for help, and umx_open_CRAN_page("umx") for NEWS.
Timothy C. Bates, Michael C. Neale, Hermine H. Maes, (2019). umx: A library for Structural Equation and Twin Modelling in R.
Twin Research and Human Genetics, 22, 27-41. <doi:10.1017/thg.2019.2>.
Author: Timothy C. Bates [aut, cre] ,
Nathan Gillespie [wit],
Hermine Maes [ctb],
Michael C. Neale [ctb],
Joshua N. Pritikin [ctb],
Luis De Araujo [ctb],
Brenton Wiernik [ctb],
Michael Zakharin [wit]
Maintainer: Timothy C. Bates <timothy.c.bates@gmail.com>
Diff between umx versions 4.19.0 dated 2023-11-16 and 4.20.0 dated 2024-04-10
DESCRIPTION | 14 ++--- MD5 | 36 +++++++------- NAMESPACE | 1 NEWS.md | 12 ++++ R/build_run_modify.R | 56 +++++++++++++++------ R/fit_and_reporting.R | 37 +++++++++++--- R/misc_and_utility.R | 102 +++++++++++++++++++++++++++++----------- R/tmx.R | 3 - R/umx_build_high_level_models.R | 32 ++++++++---- build/partial.rdb |binary inst/WORDLIST | 6 +- man/prolific_check_ID.Rd | 2 man/prolific_read_demog.Rd | 8 +-- man/tmx_genotypic_effect.Rd | 3 - man/umxPath.Rd | 39 ++++++++++----- man/umxTwoStage.Rd | 16 +++--- man/umx_read_lower.Rd | 9 +-- man/umx_scale.Rd | 4 + man/umx_score_scale.Rd | 1 19 files changed, 260 insertions(+), 121 deletions(-)
Title: Color Manipulation Tools
Description: Manipulate and visualize colors in a intuitive,
low-dependency and functional way.
Author: Emil Hvitfeldt [aut, cre]
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>
Diff between prismatic versions 1.1.1 dated 2022-08-15 and 1.1.2 dated 2024-04-10
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Title: Imports, Processes, and Visualizes Biomechanical Pressure Data
Description: Allows biomechanical pressure data from a range of systems to be imported and processed in a reproducible manner. Automatic and manual tools are included to let the user define regions (masks) to be analyzed. Also includes functions for visualizing and animating pressure data. Example methods are described in Shi et al., (2022) <doi:10.1038/s41598-022-19814-0>, Lee et al., (2014) <doi:10.1186/1757-1146-7-18>, van der Zward et al., (2014) <doi:10.1186/1757-1146-7-20>, Najafi et al., (2010) <doi:10.1016/j.gaitpost.2009.09.003>, Cavanagh and Rodgers (1987) <doi:10.1016/0021-9290(87)90255-7>.
Author: Scott Telfer [aut, cre, cph] ,
Ellen Li [aut]
Maintainer: Scott Telfer <scott.telfer@gmail.com>
Diff between pressuRe versions 0.2.3 dated 2023-10-05 and 0.2.4 dated 2024-04-10
DESCRIPTION | 9 +- MD5 | 15 ++-- NAMESPACE | 2 NEWS.md | 5 + R/pressuRe_functions.R | 158 ++++++++++++++++++++++++++++++++++++++++++++-- build/partial.rdb |binary man/arch_index.Rd |only man/create_mask_manual.Rd | 2 man/pressuRe-package.Rd | 9 ++ 9 files changed, 183 insertions(+), 17 deletions(-)
Title: Hartigan's Dip Test Statistic for Unimodality - Corrected
Description: Compute Hartigan's dip test statistic for unimodality /
multimodality and provide a test with simulation based p-values, where
the original public code has been corrected.
Author: Martin Maechler
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between diptest versions 0.77-0 dated 2023-11-27 and 0.77-1 dated 2024-04-10
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/dipTest.R | 5 +++-- build/vignette.rds |binary inst/NEWS.Rd | 11 ++++++++--- inst/doc/diptest-issues.pdf |binary tests/ex1.R | 12 +++++++++++- tests/ex1.Rout.save | 24 +++++++++++++++++------- 8 files changed, 51 insertions(+), 25 deletions(-)
Title: Boundary Adaptive Local Polynomial Conditional Density Estimator
Description: Tools for estimation and inference of conditional densities, derivatives and functions. This is the companion software for Cattaneo, Chandak, Jansson and Ma (2024) <doi:10.48550/arXiv.2204.10359>.
Author: Rajita Chandak [aut, cre]
Maintainer: Rajita Chandak <rchandak@princeton.edu>
Diff between lpcde versions 0.1.3 dated 2024-03-28 and 0.1.4 dated 2024-04-10
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 6 +++++- R/lpcde_methods.R | 20 +++++++++----------- build/partial.rdb |binary man/confint.lpcde.Rd | 10 +++------- 6 files changed, 26 insertions(+), 28 deletions(-)
Title: Confounder-Adjusted Survival Curves and Cumulative Incidence
Functions
Description: Estimate and plot confounder-adjusted survival curves using
either 'Direct Adjustment', 'Direct Adjustment with Pseudo-Values',
various forms of 'Inverse Probability of Treatment Weighting', two
forms of 'Augmented Inverse Probability of Treatment Weighting',
'Empirical Likelihood Estimation' or 'Targeted Maximum Likelihood Estimation'.
Also includes a significance test for the difference
between two adjusted survival curves and the calculation of adjusted
restricted mean survival times. Additionally enables the user to
estimate and plot cause-specific confounder-adjusted cumulative
incidence functions in the competing risks setting using the same
methods (with some exceptions).
For details, see Denz et. al (2023) <doi:10.1002/sim.9681>.
Author: Robin Denz [aut, cre]
Maintainer: Robin Denz <robin.denz@rub.de>
Diff between adjustedCurves versions 0.11.0 dated 2024-02-13 and 0.11.1 dated 2024-04-10
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adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_auc_curve/plot-linetype.svg | 2 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_auc_curve/plot-max-t.svg | 2 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_auc_curve/plot-ratio-color.svg |only adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_auc_curve/plot-ratio-linetype.svg |only adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_auc_curve/plot-ratio-rmst-conf-int.svg |only adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_auc_curve/plot-ratio-rmst.svg |only adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_auc_curve/plot-rmst-conf-int.svg | 2 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_auc_curve/plot-rmst-no-arguments.svg | 2 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_auc_curve/plot-rmtl-no-arguments.svg | 2 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_auc_curve/plot-times.svg | 2 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_curve_diff/plot-cif-no-arguments.svg | 2 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_curve_diff/plot-with-fill-area-lines.svg | 14 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_curve_diff/plot-with-none.svg | 1 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/_snaps/plot_curve_ratio/plot-cif-no-arguments.svg | 2 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_MI_adjustedcif.r | 770 +++--- adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_MI_adjustedsurv.r | 133 - adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_adjusted_rmst.r | 16 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_adjusted_rmtl.r | 13 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_adjusted_surv_quantile.r | 225 + adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_check_inputs_adj_diff.r | 11 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_check_inputs_adj_rmst.r | 33 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_check_inputs_adj_rmtl.r | 33 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_check_inputs_adj_test.r | 8 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_check_inputs_plot_difference.r | 7 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_cif_aalen_johansen.r | 36 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_cif_aiptw.r | 20 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_cif_aiptw_pseudo.r | 40 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_cif_direct.r | 1154 ++++----- adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_cif_direct_pseudo.r | 36 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_cif_g_comp.r | 142 - adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_cif_iptw.r | 16 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_cif_iptw_pseudo.r | 56 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_cif_matching.r | 4 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_general_stuff.r | 32 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_get_iptw_weights.r | 362 +-- adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_plot.adjustedcif.r | 11 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_plot.adjustedsurv.r | 210 + adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_plot_auc_curve.r | 61 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_read_from_fun.r |only adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_aiptw.r | 20 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_aiptw_pseudo.r | 40 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_direct.r | 128 - adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_direct_pseudo.r | 36 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_emp_lik.r | 285 +- adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_g_comp.r | 8 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_iptw_cox.r | 388 +-- adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_iptw_km.r | 64 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_iptw_pseudo.r | 54 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_iv_2SRIF.r | 10 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_km.r | 36 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_matching.r | 8 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_prox_aiptw.r | 20 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_prox_iptw.r | 20 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_strat_amato.r | 32 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_strat_cupples.r | 32 adjustedCurves-0.11.1/adjustedCurves/tests/testthat/test_surv_strat_nieto.r | 48 adjustedCurves-0.11.1/adjustedCurves/vignettes/comparing_groups.rmd |only adjustedCurves-0.11.1/adjustedCurves/vignettes/faq.rmd |only adjustedCurves-0.11.1/adjustedCurves/vignettes/introduction.Rmd | 186 - adjustedCurves-0.11.1/adjustedCurves/vignettes/method_overview.rmd | 9 adjustedCurves-0.11.1/adjustedCurves/vignettes/plot_customization.rmd |only 209 files changed, 8517 insertions(+), 7466 deletions(-)
More information about adjustedCurves at CRAN
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Title: Shiny Matrix Input Field
Description: Implements a custom matrix input field.
Author: Andreas Neudecker
Maintainer: Andreas Neudecker <andreas.neudecker@inwt-statistics.de>
Diff between shinyMatrix versions 0.6.0 dated 2021-05-20 and 0.8.0 dated 2024-04-10
DESCRIPTION | 10 ++-- MD5 | 16 +++++-- NEWS.md |only R/matrixInput.R | 21 ++++++++- README.md | 25 +++++++---- inst/appFormat |only inst/appUneditableCells |only inst/www/d3-format.min.js |only inst/www/matrix-input.js | 99 ++++++++++++++++++++++++++++++++++++---------- man/matrixInput.Rd | 17 ++++++- 10 files changed, 145 insertions(+), 43 deletions(-)
Title: Filter Based Feature Selection for 'mlr3'
Description: Extends 'mlr3' with filter methods for feature selection.
Besides standalone filter methods built-in methods of any
machine-learning algorithm are supported. Partial scoring of
multivariate filter methods is supported.
Author: Patrick Schratz [aut] ,
Michel Lang [cre, aut] ,
Bernd Bischl [aut] ,
Martin Binder [aut],
John Zobolas [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3filters versions 0.7.1 dated 2023-02-15 and 0.8.0 dated 2024-04-10
mlr3filters-0.7.1/mlr3filters/tests/testthat/test_FilterCorreltation.R |only mlr3filters-0.8.0/mlr3filters/DESCRIPTION | 29 +- mlr3filters-0.8.0/mlr3filters/MD5 | 115 +++++----- mlr3filters-0.8.0/mlr3filters/NAMESPACE | 2 mlr3filters-0.8.0/mlr3filters/NEWS.md | 8 mlr3filters-0.8.0/mlr3filters/R/Filter.R | 16 + mlr3filters-0.8.0/mlr3filters/R/FilterAUC.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterAnova.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterBoruta.R |only mlr3filters-0.8.0/mlr3filters/R/FilterCMIM.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterCarScore.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterCarSurvScore.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterCorrelation.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterDISR.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterFindCorrelation.R | 11 mlr3filters-0.8.0/mlr3filters/R/FilterImportance.R | 4 mlr3filters-0.8.0/mlr3filters/R/FilterInformationGain.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterJMI.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterJMIM.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterKruskalTest.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterLearner.R |only mlr3filters-0.8.0/mlr3filters/R/FilterMIM.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterMRMR.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterNJMIM.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterPerformance.R | 8 mlr3filters-0.8.0/mlr3filters/R/FilterPermutation.R | 23 +- mlr3filters-0.8.0/mlr3filters/R/FilterRelief.R | 1 mlr3filters-0.8.0/mlr3filters/R/FilterSelectedFeatures.R | 3 mlr3filters-0.8.0/mlr3filters/R/FilterUnivariateCox.R |only mlr3filters-0.8.0/mlr3filters/R/FilterVariance.R | 3 mlr3filters-0.8.0/mlr3filters/R/bibentries.R | 11 mlr3filters-0.8.0/mlr3filters/README.md | 19 - mlr3filters-0.8.0/mlr3filters/build/partial.rdb |binary mlr3filters-0.8.0/mlr3filters/man/Filter.Rd | 16 + mlr3filters-0.8.0/mlr3filters/man/mlr3filters-package.Rd | 1 mlr3filters-0.8.0/mlr3filters/man/mlr_filters.Rd | 4 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_anova.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_auc.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_boruta.Rd |only mlr3filters-0.8.0/mlr3filters/man/mlr_filters_carscore.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_carsurvscore.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_cmim.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_correlation.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_disr.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_find_correlation.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_importance.Rd | 12 - mlr3filters-0.8.0/mlr3filters/man/mlr_filters_information_gain.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_jmi.Rd | 6 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_jmim.Rd | 6 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_kruskal_test.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_mim.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_mrmr.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_njmim.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_performance.Rd | 12 - mlr3filters-0.8.0/mlr3filters/man/mlr_filters_permutation.Rd | 25 +- mlr3filters-0.8.0/mlr3filters/man/mlr_filters_relief.Rd | 8 mlr3filters-0.8.0/mlr3filters/man/mlr_filters_selected_features.Rd | 12 - mlr3filters-0.8.0/mlr3filters/man/mlr_filters_univariate_cox.Rd |only mlr3filters-0.8.0/mlr3filters/man/mlr_filters_variance.Rd | 6 mlr3filters-0.8.0/mlr3filters/tests/testthat/test_FilterCorrelation.R |only mlr3filters-0.8.0/mlr3filters/tests/testthat/test_FilterPerformance.R | 10 mlr3filters-0.8.0/mlr3filters/tests/testthat/test_FilterUnivariateCox.R |only mlr3filters-0.8.0/mlr3filters/tests/testthat/test_filter_boruta.R |only 63 files changed, 332 insertions(+), 157 deletions(-)
Title: Introduction to Probability, Statistics and R for Data-Based
Sciences
Description: Contains data sets, programmes and illustrations
discussed in the book, "Introduction to Probability, Statistics and R:
Foundations for Data-Based Sciences." Sahu (2024, isbn:9783031378645)
describes the methods in detail.
Author: Sujit K. Sahu [aut, cre]
Maintainer: Sujit K. Sahu <S.K.Sahu@soton.ac.uk>
Diff between ipsRdbs versions 0.2.6 dated 2023-07-05 and 1.0.0 dated 2024-04-10
ipsRdbs-0.2.6/ipsRdbs/LICENSE |only ipsRdbs-1.0.0/ipsRdbs/DESCRIPTION | 19 ++++---- ipsRdbs-1.0.0/ipsRdbs/MD5 | 65 ++++++++++++++++-------------- ipsRdbs-1.0.0/ipsRdbs/R/bodyfat.R | 4 - ipsRdbs-1.0.0/ipsRdbs/R/cheese.R | 60 +++++++++++++-------------- ipsRdbs-1.0.0/ipsRdbs/R/datafiles.R | 57 ++++++++++++++++++++------ ipsRdbs-1.0.0/ipsRdbs/R/gas_mileage.R | 2 ipsRdbs-1.0.0/ipsRdbs/R/monty.R | 13 +++--- ipsRdbs-1.0.0/ipsRdbs/R/possum.R | 4 - ipsRdbs-1.0.0/ipsRdbs/R/puffin.R | 4 - ipsRdbs-1.0.0/ipsRdbs/R/rfunctions.R | 16 +++---- ipsRdbs-1.0.0/ipsRdbs/R/rice.R | 8 +-- ipsRdbs-1.0.0/ipsRdbs/build/partial.rdb |binary ipsRdbs-1.0.0/ipsRdbs/build/vignette.rds |only ipsRdbs-1.0.0/ipsRdbs/data/bill.rda |binary ipsRdbs-1.0.0/ipsRdbs/data/gasmileage.rda |binary ipsRdbs-1.0.0/ipsRdbs/inst/REFERENCES.bib | 13 ++++++ ipsRdbs-1.0.0/ipsRdbs/inst/doc |only ipsRdbs-1.0.0/ipsRdbs/inst/figures |only ipsRdbs-1.0.0/ipsRdbs/man/beanie.Rd | 12 ++--- ipsRdbs-1.0.0/ipsRdbs/man/bill.Rd | 26 ++++++++++++ ipsRdbs-1.0.0/ipsRdbs/man/bodyfat.Rd | 4 - ipsRdbs-1.0.0/ipsRdbs/man/butterfly.Rd | 16 +++---- ipsRdbs-1.0.0/ipsRdbs/man/cheese.Rd | 60 +++++++++++++-------------- ipsRdbs-1.0.0/ipsRdbs/man/emissions.Rd | 12 ++--- ipsRdbs-1.0.0/ipsRdbs/man/err_age.Rd | 14 +++--- ipsRdbs-1.0.0/ipsRdbs/man/ffood.Rd | 13 +++--- ipsRdbs-1.0.0/ipsRdbs/man/gasmileage.Rd | 2 ipsRdbs-1.0.0/ipsRdbs/man/monty.Rd | 21 +++++---- ipsRdbs-1.0.0/ipsRdbs/man/possum.Rd | 4 - ipsRdbs-1.0.0/ipsRdbs/man/puffin.Rd | 4 - ipsRdbs-1.0.0/ipsRdbs/man/rice.Rd | 8 +-- ipsRdbs-1.0.0/ipsRdbs/man/wgain.Rd | 22 ++++++---- ipsRdbs-1.0.0/ipsRdbs/vignettes |only 34 files changed, 288 insertions(+), 195 deletions(-)
Title: Visualization and Tools for Ichimoku Kinko Hyo Strategies
Description: An implementation of 'Ichimoku Kinko Hyo', also commonly known as
'cloud charts'. Static and interactive visualizations with tools for
creating, backtesting and development of quantitative 'ichimoku' strategies.
As described in Sasaki (1996, ISBN:4925152009), the technique is a refinement
on candlestick charting, originating from Japan and now in widespread use in
technical analysis worldwide. Translating as 'one-glance equilibrium chart',
it allows the price action and market structure of financial securities to
be determined 'at-a-glance'. Incorporates an interface with the OANDA
fxTrade API <https://developer.oanda.com/> for retrieving historical and
live streaming price data for major currencies, metals, commodities,
government bonds and stock indices.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between ichimoku versions 1.5.0 dated 2024-02-05 and 1.5.1 dated 2024-04-10
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/oanda.R | 1 + README.md | 4 ++-- build/vignette.rds |binary 6 files changed, 15 insertions(+), 10 deletions(-)
Title: Enhanced Implementation of Whittaker-Henderson Smoothing
Description: An enhanced implementation of Whittaker-Henderson smoothing for the gradation
of one-dimensional and two-dimensional actuarial tables used to quantify Life Insurance risks.
'WH' is based on the methods described in Biessy (2023) <doi:10.48550/arXiv.2306.06932>.
Among other features, it generalizes the original smoothing algorithm to maximum likelihood estimation,
automatically selects the smoothing parameter(s) and extrapolates beyond the range of data.
Author: Guillaume Biessy [aut, cre, cph]
Maintainer: Guillaume Biessy <guillaume.biessy78@gmail.com>
Diff between WH versions 1.1.0 dated 2023-09-18 and 1.1.1 dated 2024-04-10
WH-1.1.0/WH/vignettes/Whittaker_Henderson_plots.R |only WH-1.1.1/WH/DESCRIPTION | 16 +- WH-1.1.1/WH/MD5 | 71 ++++++------- WH-1.1.1/WH/NEWS.md | 94 ++++++++--------- WH-1.1.1/WH/R/WH-package.R | 3 WH-1.1.1/WH/R/main.R | 2 WH-1.1.1/WH/README.md | 2 WH-1.1.1/WH/build/vignette.rds |binary WH-1.1.1/WH/inst/CITATION | 3 WH-1.1.1/WH/inst/WORDLIST |only WH-1.1.1/WH/inst/doc/WH.Rmd | 2 WH-1.1.1/WH/inst/doc/WH.html | 80 +++++++------- WH-1.1.1/WH/man/WH-package.Rd | 13 ++ WH-1.1.1/WH/man/WH_1d.Rd | 2 WH-1.1.1/WH/man/WH_1d_fixed_lambda.Rd | 98 ++++++++--------- WH-1.1.1/WH/man/WH_1d_outer.Rd | 120 +++++++++++----------- WH-1.1.1/WH/man/WH_1d_perf.Rd | 120 +++++++++++----------- WH-1.1.1/WH/man/WH_2d_fixed_lambda.Rd | 80 +++++++------- WH-1.1.1/WH/man/WH_2d_outer.Rd | 120 +++++++++++----------- WH-1.1.1/WH/man/WH_2d_perf.Rd | 120 +++++++++++----------- WH-1.1.1/WH/man/build_D_mat.Rd | 42 +++---- WH-1.1.1/WH/man/compute_res_deviance.Rd | 42 +++---- WH-1.1.1/WH/man/eigen_dec.Rd | 48 ++++---- WH-1.1.1/WH/man/get_diagnosis.Rd | 56 +++++----- WH-1.1.1/WH/man/map.Rd | 52 ++++----- WH-1.1.1/WH/man/map2.Rd | 52 ++++----- WH-1.1.1/WH/man/output_to_df.Rd | 98 ++++++++--------- WH-1.1.1/WH/man/plot.WH_1d.Rd | 72 ++++++------- WH-1.1.1/WH/man/plot.WH_2d.Rd | 76 ++++++------- WH-1.1.1/WH/man/portfolio_LTC.Rd | 44 ++++---- WH-1.1.1/WH/man/portfolio_mort.Rd | 42 +++---- WH-1.1.1/WH/man/predict.WH_1d.Rd | 70 ++++++------ WH-1.1.1/WH/man/print.WH_1d.Rd | 60 +++++------ WH-1.1.1/WH/man/print.WH_2d.Rd | 58 +++++----- WH-1.1.1/WH/tests/spelling.R |only WH-1.1.1/WH/tests/testthat/test-1D.R | 8 - WH-1.1.1/WH/tests/testthat/test-2D.R | 8 - WH-1.1.1/WH/vignettes/WH.Rmd | 2 38 files changed, 898 insertions(+), 878 deletions(-)
Title: Pre-Commit Hooks
Description: Useful git hooks for R building on top of the multi-language
framework 'pre-commit' for hook management. This package provides git
hooks for common tasks like formatting files with 'styler' or spell
checking as well as wrapper functions to access the 'pre-commit'
executable.
Author: Lorenz Walthert
Maintainer: Lorenz Walthert <lorenz.walthert@icloud.com>
Diff between precommit versions 0.4.1 dated 2024-03-31 and 0.4.2 dated 2024-04-10
DESCRIPTION | 6 +++--- MD5 | 19 ++++++++++--------- NEWS.md | 5 +++++ R/release.R | 1 + R/testing.R | 11 +++++++++++ inst/doc/available-hooks.html | 4 ++-- inst/pre-commit-config-pkg.yaml | 2 +- inst/pre-commit-config-proj.yaml | 2 +- man/empty_on_cran.Rd |only tests/testthat/test-hook-pkgdown.R | 2 +- tests/testthat/test-hook-roxygenize.R | 6 +++--- 11 files changed, 38 insertions(+), 20 deletions(-)
Title: Helper Functions for 'mlr3'
Description: Frequently used helper functions and assertions used in
'mlr3' and its companion packages. Comes with helper functions for
functional programming, for printing, to work with 'data.table', as
well as some generally useful 'R6' classes. This package also
supersedes the package 'BBmisc'.
Author: Michel Lang [cre, aut] ,
Patrick Schratz [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3misc versions 0.14.0 dated 2024-02-01 and 0.15.0 dated 2024-04-10
DESCRIPTION | 14 ++++++------ MD5 | 13 +++++++---- NAMESPACE | 3 ++ NEWS.md | 5 ++++ R/encapsulate.R | 18 ++++++++++++--- R/strip_srcrefs.R |only man/strip_srcrefs.Rd |only tests/testthat/test_encapsulate.R | 41 ++++++++++++++++++++++++++++++++++++ tests/testthat/test_strip_srcrefs.R |only 9 files changed, 78 insertions(+), 16 deletions(-)
Title: qPCR Data Analysis
Description: Various methods are employed for statistical analysis and graphical presentation of real-time PCR (quantitative PCR or qPCR) data. 'rtpcr' handles amplification efficiency calculation, statistical analysis and graphical representation of real-time PCR data based on up to two reference genes. By accounting for amplification efficiency values, 'rtpcr' was developed using a general calculation method described by Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5>, covering both the Livak and Pfaffl methods. Based on the experimental conditions, the functions of the 'rtpcr' package use t-test (for experiments with a two-level factor) or analysis of variance (for cases where more than two levels or factors exist) to calculate the fold change or relative expression. The functions also provide standard deviations and confidence limits for means and apply statistical mean comparisons. To facilitate using 'rtpcr', different datasets have been employed in the examples and the outputs ar [...truncated...]
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <gh.mirzaghaderi@uok.ac.ir>
Diff between rtpcr versions 1.0.1 dated 2024-04-05 and 1.0.2 dated 2024-04-10
rtpcr-1.0.1/rtpcr/COPYING |only rtpcr-1.0.1/rtpcr/R/data_1factor.r |only rtpcr-1.0.1/rtpcr/R/data_2factor.r |only rtpcr-1.0.1/rtpcr/R/data_2factorBlock.r |only rtpcr-1.0.1/rtpcr/R/data_3factor_a.r |only rtpcr-1.0.1/rtpcr/R/data_3factor_b.r |only rtpcr-1.0.1/rtpcr/R/data_efficiency.r |only rtpcr-1.0.1/rtpcr/R/data_ttest.r |only rtpcr-1.0.1/rtpcr/R/data_ttest2.r |only rtpcr-1.0.1/rtpcr/R/data_withTechRep.r |only rtpcr-1.0.2/rtpcr/DESCRIPTION | 10 rtpcr-1.0.2/rtpcr/MD5 | 96 +++--- rtpcr-1.0.2/rtpcr/NAMESPACE | 10 rtpcr-1.0.2/rtpcr/R/efficiency.r | 12 rtpcr-1.0.2/rtpcr/R/meanTech.r | 8 rtpcr-1.0.2/rtpcr/R/oneFACTORplot.r | 18 - rtpcr-1.0.2/rtpcr/R/package_data.r |only rtpcr-1.0.2/rtpcr/R/qpcrANCOVA.r | 393 ++++++++++++---------------- rtpcr-1.0.2/rtpcr/R/qpcrANOVA.r | 145 +--------- rtpcr-1.0.2/rtpcr/R/qpcrTTEST.r | 16 - rtpcr-1.0.2/rtpcr/R/qpcrTTESTplot.r | 33 +- rtpcr-1.0.2/rtpcr/R/qpcrhlpr.r |only rtpcr-1.0.2/rtpcr/R/threeFACTORplot.r | 16 - rtpcr-1.0.2/rtpcr/R/twoFACTORplot.r | 16 - rtpcr-1.0.2/rtpcr/data/Lee_etal2020qPCR.rda |only rtpcr-1.0.2/rtpcr/data/data_ttest.rda |binary rtpcr-1.0.2/rtpcr/data/data_ttest2.rda |binary rtpcr-1.0.2/rtpcr/inst/doc/vignette.R | 42 +- rtpcr-1.0.2/rtpcr/inst/doc/vignette.Rmd | 52 ++- rtpcr-1.0.2/rtpcr/inst/doc/vignette.html | 266 ++++++++++-------- rtpcr-1.0.2/rtpcr/inst/extdata |only rtpcr-1.0.2/rtpcr/man/Lee_etal2020qPCR.Rd |only rtpcr-1.0.2/rtpcr/man/data_1factor.Rd | 58 +--- rtpcr-1.0.2/rtpcr/man/data_2factor.Rd | 61 +--- rtpcr-1.0.2/rtpcr/man/data_2factorBlock.Rd | 63 ++-- rtpcr-1.0.2/rtpcr/man/data_3factor_a.Rd | 63 ++-- rtpcr-1.0.2/rtpcr/man/data_3factor_b.Rd | 64 ++-- rtpcr-1.0.2/rtpcr/man/data_efficiency.Rd | 53 +-- rtpcr-1.0.2/rtpcr/man/data_ttest.Rd | 55 +-- rtpcr-1.0.2/rtpcr/man/data_ttest2.Rd | 17 - rtpcr-1.0.2/rtpcr/man/data_withTechRep.Rd | 65 ++-- rtpcr-1.0.2/rtpcr/man/efficiency.Rd | 12 rtpcr-1.0.2/rtpcr/man/meanTech.Rd | 8 rtpcr-1.0.2/rtpcr/man/multiplot.Rd | 106 +++---- rtpcr-1.0.2/rtpcr/man/oneFACTORplot.Rd | 13 rtpcr-1.0.2/rtpcr/man/qpcrANCOVA.Rd | 257 ++++++++++-------- rtpcr-1.0.2/rtpcr/man/qpcrANOVA.Rd | 8 rtpcr-1.0.2/rtpcr/man/qpcrTTEST.Rd | 12 rtpcr-1.0.2/rtpcr/man/qpcrTTESTplot.Rd | 30 +- rtpcr-1.0.2/rtpcr/man/threeFACTORplot.Rd | 11 rtpcr-1.0.2/rtpcr/man/twoFACTORplot.Rd | 11 rtpcr-1.0.2/rtpcr/vignettes/vignette.Rmd | 52 ++- 52 files changed, 1091 insertions(+), 1061 deletions(-)
Title: Make, Update, and Query Binary Causal Models
Description: Users can declare binary causal models, update beliefs about causal types given data and calculate arbitrary estimands. Model definition makes use of 'dagitty' functionality. Updating is implemented in 'stan'. The approach used in 'CausalQueries' is a generalization of the 'biqq' models described in "Mixing Methods: A Bayesian Approach" (Humphreys and Jacobs, 2015, <DOI:10.1017/S0003055415000453>). The conceptual extension makes use of work on probabilistic causal models described in Pearl's Causality (Pearl, 2009, <DOI:10.1017/CBO9780511803161>).
Author: Clara Bicalho [ctb],
Jasper Cooper [ctb],
Macartan Humphreys [aut] ,
Till Tietz [aut, cre] ,
Alan Jacobs [aut],
Merlin Heidemanns [ctb],
Lily Medina [aut] ,
Julio Solis [ctb],
Georgiy Syunyaev [aut]
Maintainer: Till Tietz <ttietz2014@gmail.com>
Diff between CausalQueries versions 1.0.2 dated 2024-01-15 and 1.1.0 dated 2024-04-10
CausalQueries-1.0.2/CausalQueries/man/all_data_types.Rd |only CausalQueries-1.0.2/CausalQueries/man/get_event_prob.Rd |only CausalQueries-1.0.2/CausalQueries/man/plot_dag.Rd |only CausalQueries-1.1.0/CausalQueries/DESCRIPTION | 13 CausalQueries-1.1.0/CausalQueries/MD5 | 206 +++++---- CausalQueries-1.1.0/CausalQueries/NAMESPACE | 45 - CausalQueries-1.1.0/CausalQueries/NEWS.md | 52 ++ CausalQueries-1.1.0/CausalQueries/R/clean_params.R | 29 - CausalQueries-1.1.0/CausalQueries/R/data_helpers.R | 20 CausalQueries-1.1.0/CausalQueries/R/get_ambiguities_matrix.R | 21 CausalQueries-1.1.0/CausalQueries/R/get_causal_types.R | 5 CausalQueries-1.1.0/CausalQueries/R/get_event_prob.R | 16 CausalQueries-1.1.0/CausalQueries/R/get_nodal_types.R | 30 - CausalQueries-1.1.0/CausalQueries/R/get_parents.R | 4 CausalQueries-1.1.0/CausalQueries/R/get_posterior_distribution.R |only CausalQueries-1.1.0/CausalQueries/R/get_type_prob.R | 20 CausalQueries-1.1.0/CausalQueries/R/grab.R |only CausalQueries-1.1.0/CausalQueries/R/helpers.R | 28 - CausalQueries-1.1.0/CausalQueries/R/make_data.R | 4 CausalQueries-1.1.0/CausalQueries/R/make_events.R | 2 CausalQueries-1.1.0/CausalQueries/R/make_models.R | 94 +--- CausalQueries-1.1.0/CausalQueries/R/map_query_to_causal_type.R | 81 +-- CausalQueries-1.1.0/CausalQueries/R/map_query_to_nodal_type.R | 20 CausalQueries-1.1.0/CausalQueries/R/methods.R |only CausalQueries-1.1.0/CausalQueries/R/parmap.R | 34 - CausalQueries-1.1.0/CausalQueries/R/plot_dag.R | 11 CausalQueries-1.1.0/CausalQueries/R/prep_stan_data.R | 6 CausalQueries-1.1.0/CausalQueries/R/query_model.R | 12 CausalQueries-1.1.0/CausalQueries/R/set_confounds.R | 6 CausalQueries-1.1.0/CausalQueries/R/set_parameter_matrix.R | 48 -- CausalQueries-1.1.0/CausalQueries/R/set_parameters.R | 13 CausalQueries-1.1.0/CausalQueries/R/set_prior_distribution.R | 24 - CausalQueries-1.1.0/CausalQueries/R/set_priors.R | 12 CausalQueries-1.1.0/CausalQueries/R/set_restrictions.R | 26 - CausalQueries-1.1.0/CausalQueries/R/update_model.R | 228 ++++++---- CausalQueries-1.1.0/CausalQueries/README.md | 2 CausalQueries-1.1.0/CausalQueries/build/vignette.rds |binary CausalQueries-1.1.0/CausalQueries/inst/doc/front-door.Rmd | 6 CausalQueries-1.1.0/CausalQueries/inst/doc/front-door.html | 34 - CausalQueries-1.1.0/CausalQueries/inst/doc/getting-started.R | 4 CausalQueries-1.1.0/CausalQueries/inst/doc/getting-started.Rmd | 10 CausalQueries-1.1.0/CausalQueries/inst/doc/getting-started.html | 156 +++--- CausalQueries-1.1.0/CausalQueries/inst/doc/inspecting-posteriors.R |only CausalQueries-1.1.0/CausalQueries/inst/doc/inspecting-posteriors.Rmd |only CausalQueries-1.1.0/CausalQueries/inst/doc/inspecting-posteriors.html |only CausalQueries-1.1.0/CausalQueries/inst/stan/simplexes.stan | 12 CausalQueries-1.1.0/CausalQueries/man/causal_type_names.Rd | 2 CausalQueries-1.1.0/CausalQueries/man/collapse_nodal_types.Rd | 2 CausalQueries-1.1.0/CausalQueries/man/find_rounding_threshold.Rd |only CausalQueries-1.1.0/CausalQueries/man/get_all_data_types.Rd |only CausalQueries-1.1.0/CausalQueries/man/get_ambiguities_matrix.Rd | 5 CausalQueries-1.1.0/CausalQueries/man/get_causal_types.Rd | 5 CausalQueries-1.1.0/CausalQueries/man/get_event_probabilities.Rd |only CausalQueries-1.1.0/CausalQueries/man/get_nodal_types.Rd | 13 CausalQueries-1.1.0/CausalQueries/man/get_param_dist.Rd | 5 CausalQueries-1.1.0/CausalQueries/man/get_parameter_matrix.Rd | 5 CausalQueries-1.1.0/CausalQueries/man/get_parameter_names.Rd | 4 CausalQueries-1.1.0/CausalQueries/man/get_parents.Rd | 4 CausalQueries-1.1.0/CausalQueries/man/get_parmap.Rd | 4 CausalQueries-1.1.0/CausalQueries/man/get_posterior_distribution.Rd |only CausalQueries-1.1.0/CausalQueries/man/get_prior_distribution.Rd | 14 CausalQueries-1.1.0/CausalQueries/man/get_type_names.Rd | 4 CausalQueries-1.1.0/CausalQueries/man/get_type_prob.Rd | 5 CausalQueries-1.1.0/CausalQueries/man/get_type_prob_multiple.Rd | 6 CausalQueries-1.1.0/CausalQueries/man/grab.Rd |only CausalQueries-1.1.0/CausalQueries/man/interpret_type.Rd | 11 CausalQueries-1.1.0/CausalQueries/man/make_ambiguities_matrix.Rd | 5 CausalQueries-1.1.0/CausalQueries/man/make_data_single.Rd | 2 CausalQueries-1.1.0/CausalQueries/man/make_model.Rd | 4 CausalQueries-1.1.0/CausalQueries/man/make_parameter_matrix.Rd | 4 CausalQueries-1.1.0/CausalQueries/man/make_parmap.Rd | 24 - CausalQueries-1.1.0/CausalQueries/man/parameter_setting.Rd | 8 CausalQueries-1.1.0/CausalQueries/man/plot_model.Rd |only CausalQueries-1.1.0/CausalQueries/man/prep_stan_data.Rd | 7 CausalQueries-1.1.0/CausalQueries/man/print.causal_model.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.causal_types.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.dag.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.event_probabilities.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.model_query.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.nodal_types.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.nodes.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.parameters.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.parameters_df.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.parameters_posterior.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.parameters_prior.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.parents_df.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.posterior_event_probabilities.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.stan_summary.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.statement.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.type_posterior.Rd |only CausalQueries-1.1.0/CausalQueries/man/print.type_prior.Rd |only CausalQueries-1.1.0/CausalQueries/man/prior_setting.Rd | 8 CausalQueries-1.1.0/CausalQueries/man/query_model.Rd | 9 CausalQueries-1.1.0/CausalQueries/man/set_ambiguities_matrix.Rd | 5 CausalQueries-1.1.0/CausalQueries/man/set_confound.Rd | 6 CausalQueries-1.1.0/CausalQueries/man/set_parmap.Rd | 4 CausalQueries-1.1.0/CausalQueries/man/set_prior_distribution.Rd | 8 CausalQueries-1.1.0/CausalQueries/man/set_restrictions.Rd | 18 CausalQueries-1.1.0/CausalQueries/man/summarise_distribution.Rd |only CausalQueries-1.1.0/CausalQueries/man/summary.causal_model.Rd |only CausalQueries-1.1.0/CausalQueries/man/uncollapse_nodal_types.Rd | 6 CausalQueries-1.1.0/CausalQueries/man/update_model.Rd | 101 ++-- CausalQueries-1.1.0/CausalQueries/src/stanExports_simplexes.h | 62 +- CausalQueries-1.1.0/CausalQueries/tests/testthat/test_data_helpers.R | 6 CausalQueries-1.1.0/CausalQueries/tests/testthat/test_get_event_prob.R | 8 CausalQueries-1.1.0/CausalQueries/tests/testthat/test_get_posterior_distribution.R |only CausalQueries-1.1.0/CausalQueries/tests/testthat/test_get_types.R | 4 CausalQueries-1.1.0/CausalQueries/tests/testthat/test_grab.R |only CausalQueries-1.1.0/CausalQueries/tests/testthat/test_make_model.R | 17 CausalQueries-1.1.0/CausalQueries/tests/testthat/test_map_query_to_causal_types.R | 9 CausalQueries-1.1.0/CausalQueries/tests/testthat/test_map_query_to_nodal_type.R | 4 CausalQueries-1.1.0/CausalQueries/tests/testthat/test_methods.R |only CausalQueries-1.1.0/CausalQueries/tests/testthat/test_observe.R | 2 CausalQueries-1.1.0/CausalQueries/tests/testthat/test_plot_dag.R | 16 CausalQueries-1.1.0/CausalQueries/tests/testthat/test_reveal_outcomes.R | 6 CausalQueries-1.1.0/CausalQueries/tests/testthat/test_set_confound.R | 2 CausalQueries-1.1.0/CausalQueries/tests/testthat/test_set_parameter_matrix.R | 5 CausalQueries-1.1.0/CausalQueries/tests/testthat/test_set_prior_distribution.R | 30 - CausalQueries-1.1.0/CausalQueries/tests/testthat/test_set_priors.R | 57 -- CausalQueries-1.1.0/CausalQueries/tests/testthat/test_update_model.R | 36 + CausalQueries-1.1.0/CausalQueries/vignettes/front-door.Rmd | 6 CausalQueries-1.1.0/CausalQueries/vignettes/getting-started.Rmd | 10 CausalQueries-1.1.0/CausalQueries/vignettes/inspecting-posteriors.Rmd |only 123 files changed, 930 insertions(+), 992 deletions(-)
Title: Fast 'JSON', 'NDJSON' and 'GeoJSON' Parser and Generator
Description: A fast 'JSON' parser, generator and validator which converts 'JSON',
'NDJSON' (Newline Delimited 'JSON') and 'GeoJSON' (Geographic 'JSON') data
to/from R objects. The standard R data types are
supported (e.g. logical, numeric, integer) with configurable handling of NULL
and NA values. Data frames, atomic vectors and lists are all supported as data
containers translated to/from 'JSON'. 'GeoJSON' data is read in as
'simple features' objects.
This implementation wraps the 'yyjson' 'C' library which
is available from <https://github.com/ibireme/yyjson>.
Author: Mike Cheng [aut, cre, cph],
Yao Yuan [aut, cph]
Maintainer: Mike Cheng <mikefc@coolbutuseless.com>
Diff between yyjsonr versions 0.1.18 dated 2024-01-22 and 0.1.20 dated 2024-04-10
yyjsonr-0.1.18/yyjsonr/man/benchmark/benchmarks.Rmd |only yyjsonr-0.1.18/yyjsonr/man/benchmark/benchmarks.html |only yyjsonr-0.1.20/yyjsonr/DESCRIPTION | 30 +- yyjsonr-0.1.20/yyjsonr/MD5 | 145 +++++++--- yyjsonr-0.1.20/yyjsonr/NAMESPACE | 11 yyjsonr-0.1.20/yyjsonr/NEWS.md | 50 +++ yyjsonr-0.1.20/yyjsonr/R/geojson.R |only yyjsonr-0.1.20/yyjsonr/R/json-opts.R | 30 +- yyjsonr-0.1.20/yyjsonr/R/json.R | 6 yyjsonr-0.1.20/yyjsonr/R/ndjson.R |only yyjsonr-0.1.20/yyjsonr/R/utils.R | 14 yyjsonr-0.1.20/yyjsonr/build/vignette.rds |binary yyjsonr-0.1.20/yyjsonr/inst/COPYRIGHTS |only yyjsonr-0.1.20/yyjsonr/inst/LICENSE-yyjson.txt |only yyjsonr-0.1.20/yyjsonr/inst/doc/from_json_options.html | 2 yyjsonr-0.1.20/yyjsonr/inst/doc/jsonlite-comparison.html | 2 yyjsonr-0.1.20/yyjsonr/inst/doc/to_json_options.html | 7 yyjsonr-0.1.20/yyjsonr/inst/geojson-example.json |only yyjsonr-0.1.20/yyjsonr/man/benchmark/benchmark-geoson.Rmd |only yyjsonr-0.1.20/yyjsonr/man/benchmark/benchmark-json.Rmd |only yyjsonr-0.1.20/yyjsonr/man/benchmark/benchmark-ndjson.Rmd |only yyjsonr-0.1.20/yyjsonr/man/figures/benchmark-geojson.png |only yyjsonr-0.1.20/yyjsonr/man/figures/benchmark-ndjson.png |only yyjsonr-0.1.20/yyjsonr/man/figures/benchmark-summary.png |binary yyjsonr-0.1.20/yyjsonr/man/opts_read_geojson.Rd |only yyjsonr-0.1.20/yyjsonr/man/opts_write_geojson.Rd |only yyjsonr-0.1.20/yyjsonr/man/opts_write_json.Rd | 11 yyjsonr-0.1.20/yyjsonr/man/read_geojson_str.Rd |only yyjsonr-0.1.20/yyjsonr/man/read_json_conn.Rd | 4 yyjsonr-0.1.20/yyjsonr/man/read_json_file.Rd | 4 yyjsonr-0.1.20/yyjsonr/man/read_json_raw.Rd | 4 yyjsonr-0.1.20/yyjsonr/man/read_json_str.Rd | 4 yyjsonr-0.1.20/yyjsonr/man/read_ndjson_file.Rd |only yyjsonr-0.1.20/yyjsonr/man/read_ndjson_str.Rd |only yyjsonr-0.1.20/yyjsonr/man/write_geojson_str.Rd |only yyjsonr-0.1.20/yyjsonr/man/write_json_file.Rd | 4 yyjsonr-0.1.20/yyjsonr/man/write_json_str.Rd | 4 yyjsonr-0.1.20/yyjsonr/man/write_ndjson_file.Rd |only yyjsonr-0.1.20/yyjsonr/man/write_ndjson_str.Rd |only yyjsonr-0.1.20/yyjsonr/man/yyjson_version.Rd |only yyjsonr-0.1.20/yyjsonr/man/yyjson_write_flag.Rd | 4 yyjsonr-0.1.20/yyjsonr/src/Makevars | 1 yyjsonr-0.1.20/yyjsonr/src/R-yyjson-parse.c | 69 ++++ yyjsonr-0.1.20/yyjsonr/src/R-yyjson-parse.h | 2 yyjsonr-0.1.20/yyjsonr/src/R-yyjson-serialize.c | 78 ++--- yyjsonr-0.1.20/yyjsonr/src/R-yyjson-serialize.h | 13 yyjsonr-0.1.20/yyjsonr/src/geojson-parse.c |only yyjsonr-0.1.20/yyjsonr/src/geojson-serialize.c |only yyjsonr-0.1.20/yyjsonr/src/init.c | 63 ++++ yyjsonr-0.1.20/yyjsonr/src/ndjson-parse.c |only yyjsonr-0.1.20/yyjsonr/src/ndjson-serialize.c |only yyjsonr-0.1.20/yyjsonr/src/utils.c |only yyjsonr-0.1.20/yyjsonr/src/yyjson.c | 36 ++ yyjsonr-0.1.20/yyjsonr/src/yyjson.h | 56 ++- yyjsonr-0.1.20/yyjsonr/tests/testthat/examples/flights.ndjson |only yyjsonr-0.1.20/yyjsonr/tests/testthat/examples/mtcars.json |only yyjsonr-0.1.20/yyjsonr/tests/testthat/examples/mtcars.json.gz |only yyjsonr-0.1.20/yyjsonr/tests/testthat/geojson |only yyjsonr-0.1.20/yyjsonr/tests/testthat/ndjson |only yyjsonr-0.1.20/yyjsonr/tests/testthat/test-basic.R | 5 yyjsonr-0.1.20/yyjsonr/tests/testthat/test-factors.R |only yyjsonr-0.1.20/yyjsonr/tests/testthat/test-fast-numerics.R |only yyjsonr-0.1.20/yyjsonr/tests/testthat/test-geojson-promotion-compat.R |only yyjsonr-0.1.20/yyjsonr/tests/testthat/test-geojson-read-write.R |only yyjsonr-0.1.20/yyjsonr/tests/testthat/test-issue19-ndjson-long-lines.R |only yyjsonr-0.1.20/yyjsonr/tests/testthat/test-ndjson.R |only yyjsonr-0.1.20/yyjsonr/tests/testthat/test-read-json-file-gz.R |only 67 files changed, 522 insertions(+), 137 deletions(-)
Title: Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools
Description: Using tidy data principles can make many text mining tasks
easier, more effective, and consistent with tools already in wide use.
Much of the infrastructure needed for text mining with tidy data
frames already exists in packages like 'dplyr', 'broom', 'tidyr', and
'ggplot2'. In this package, we provide functions and supporting data
sets to allow conversion of text to and from tidy formats, and to
switch seamlessly between tidy tools and existing text mining
packages.
Author: Gabriela De Queiroz [ctb],
Colin Fay [ctb] ,
Emil Hvitfeldt [ctb],
Os Keyes [ctb] ,
Kanishka Misra [ctb],
Tim Mastny [ctb],
Jeff Erickson [ctb],
David Robinson [aut],
Julia Silge [aut, cre]
Maintainer: Julia Silge <julia.silge@gmail.com>
Diff between tidytext versions 0.4.1 dated 2023-01-07 and 0.4.2 dated 2024-04-10
DESCRIPTION | 17 MD5 | 51 - NEWS.md | 6 R/unnest_tokens.R | 8 R/unnest_tweets.R | 2 README.md | 31 build/vignette.rds |binary inst/doc/tf_idf.R | 10 inst/doc/tf_idf.Rmd | 16 inst/doc/tf_idf.html | 66 - inst/doc/tidying_casting.R | 48 - inst/doc/tidying_casting.Rmd | 61 + inst/doc/tidying_casting.html | 336 ++++------ inst/doc/tidytext.R | 38 - inst/doc/tidytext.Rmd | 57 + inst/doc/tidytext.html | 213 +++--- man/figures/README-unnamed-chunk-13-1.png |binary man/tidytext-package.Rd | 1 man/unnest_tokens.Rd | 6 tests/testthat/_snaps/reorder-within/custom-label-boxplot.svg | 2 tests/testthat/_snaps/reorder-within/reordered-boxplot.svg | 2 tests/testthat/_snaps/unnest_tweet.md | 2 tests/testthat/reordered-boxplot.svg |only tests/testthat/test-stm-tidiers.R | 5 vignettes/tf_idf.Rmd | 16 vignettes/tidying_casting.Rmd | 61 + vignettes/tidytext.Rmd | 57 + 27 files changed, 592 insertions(+), 520 deletions(-)
Title: Calculating Linkage Disequilibrium (LD) in Human Population
Groups of Interest
Description: Provides access to the 'LDlink' API (<https://ldlink.nih.gov/?tab=apiaccess>)
using the R console. This programmatic access facilitates researchers who are
interested in performing batch queries in 1000 Genomes Project (2015) <doi:10.1038/nature15393>
data using 'LDlink'. 'LDlink' is an interactive and powerful suite of web-based tools for querying
germline variants in human population groups of interest. For more details, please see
Machiela et al. (2015) <doi:10.1093/bioinformatics/btv402>.
Author: Timothy A. Myers [aut, cre] ,
Stephen J. Chanock [aut],
Mitchell J. Machiela [aut]
Maintainer: Timothy A. Myers <myersta@mail.nih.gov>
Diff between LDlinkR versions 1.3.0 dated 2023-05-31 and 1.4.0 dated 2024-04-10
DESCRIPTION | 8 MD5 | 38 +-- NEWS.md | 10 R/LDmatrix.R | 8 R/LDproxy.R | 16 + R/LDproxy_batch.R | 5 README.md | 1 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/LDlinkR.R | 4 inst/doc/LDlinkR.Rmd | 22 +- inst/doc/LDlinkR.html | 372 ++++++++++++++++++------------------ man/LDmatrix.Rd | 2 man/LDproxy.Rd | 4 man/LDproxy_batch.Rd | 4 tests/testthat/test-ldmatrix.R | 26 ++ tests/testthat/test-ldproxy.R | 11 + tests/testthat/test-ldproxy_batch.R | 18 - vignettes/LDlinkR.Rmd | 22 +- 20 files changed, 339 insertions(+), 236 deletions(-)
Title: Comparison of Binary Diagnostic Tests in a Paired Study Design
Description: Comparison of the accuracy of two binary diagnostic tests in a "paired" study design, i.e. when each test is applied to each subject in the study.
Author: Christian Stock [aut, cre] ,
Thomas Hielscher [aut],
Andrea Discacciati [aut]
Maintainer: Christian Stock <christian.stock@boehringer-ingelheim.com>
Diff between DTComPair versions 1.2.2 dated 2023-08-20 and 1.2.4 dated 2024-04-10
DESCRIPTION | 14 +++--- MD5 | 21 +++++----- NEWS.md | 7 ++- R/DTComPair.R | 14 +++--- R/pv.prev.R | 10 ++-- README.md | 98 +++++++---------------------------------------- inst/CITATION | 8 +-- inst/WORDLIST |only man/acc.1test.Rd | 2 man/dtcompair-package.rd | 2 man/figures |only man/pv.prev.Rd | 10 ++-- tests |only 13 files changed, 65 insertions(+), 121 deletions(-)
Title: Make Static HTML Documentation for a Package
Description: Generate an attractive and useful website from a source
package. 'pkgdown' converts your documentation, vignettes, 'README',
and more to 'HTML' making it easy to share information about your
package online.
Author: Hadley Wickham [aut, cre] ,
Jay Hesselberth [aut] ,
Maelle Salmon [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between pkgdown versions 2.0.7 dated 2022-12-14 and 2.0.8 dated 2024-04-10
DESCRIPTION | 41 - LICENSE | 4 MD5 | 305 +++++----- NAMESPACE | 1 NEWS.md | 56 + R/build-articles.R | 46 - R/build-favicons.R | 40 - R/build-github.R | 6 R/build-home-authors.R | 4 R/build-home-citation.R | 7 R/build-home-index.R | 47 - R/build-home-license.R | 2 R/build-home-md.R | 2 R/build-home.R | 2 R/build-news.R | 19 R/build-redirects.R | 21 R/build-reference-index.R | 44 - R/build-reference.R | 44 - R/build-search-docs.R | 4 R/build-tutorials.R | 4 R/build.R | 61 +- R/check.R | 5 R/clean.R | 8 R/deploy-site.R | 33 - R/development.R | 6 R/figure.R | 6 R/init.R | 7 R/markdown.R | 9 R/navbar.R | 4 R/package.R | 85 +- R/preview.R | 2 R/rd-example.R | 38 - R/rd-html.R | 20 R/render.R | 56 - R/repo.R | 4 R/rmarkdown.R | 35 - R/sitrep.R | 34 - R/templates.R | 11 R/test.R | 2 R/theme.R | 92 +-- R/topics-external.R | 8 R/topics.R | 39 - R/tweak-reference.R | 2 R/usage.R | 25 R/utils-fs.R | 20 R/utils-yaml.R | 47 - R/utils.R | 46 - README.md | 7 build/pkgdown.pdf |binary build/stage23.rdb |only build/vignette.rds |binary inst/BS3/templates/content-citation-authors.html | 4 inst/BS3/templates/head.html | 2 inst/BS5/templates/navbar.html | 2 inst/doc/customise.R | 2 inst/doc/customise.Rmd | 24 inst/doc/customise.html | 269 ++++---- inst/doc/how-to-update-released-site.R | 40 + inst/doc/how-to-update-released-site.Rmd | 214 +++---- inst/doc/how-to-update-released-site.html | 173 ++--- inst/doc/linking.R | 2 inst/doc/linking.html | 38 - inst/doc/metadata.R | 2 inst/doc/metadata.html | 60 - inst/doc/pkgdown.R | 4 inst/doc/pkgdown.Rmd | 7 inst/doc/pkgdown.html | 88 +- inst/doc/search.R | 2 inst/doc/search.Rmd | 2 inst/doc/search.html | 36 - inst/po/ca |only man/build_articles.Rd | 13 man/build_favicons.Rd | 3 man/build_home.Rd | 4 man/build_reference.Rd | 8 man/build_site.Rd | 138 ---- man/build_site_github_pages.Rd | 2 man/clean_site.Rd | 4 man/figures/logo.png |binary man/pkgdown-package.Rd | 4 man/rmd-fragments/authors-configuration.Rmd | 4 man/rmd-fragments/footer-configuration.Rmd | 2 man/rmd-fragments/navbar-configuration.Rmd | 7 man/test-dont.Rd | 2 po/R-ca.po |only tests/testthat/_snaps/build-articles.md | 126 +++- tests/testthat/_snaps/build-favicons.md | 14 tests/testthat/_snaps/build-github.md |only tests/testthat/_snaps/build-home-authors.md | 2 tests/testthat/_snaps/build-home-citation.md | 8 tests/testthat/_snaps/build-home-index.md | 37 + tests/testthat/_snaps/build-home.md | 46 + tests/testthat/_snaps/build-logo.md | 5 tests/testthat/_snaps/build-news.md | 33 - tests/testthat/_snaps/build-redirects.md | 7 tests/testthat/_snaps/build-reference-index.md | 70 ++ tests/testthat/_snaps/build-reference.md | 57 + tests/testthat/_snaps/check.md | 8 tests/testthat/_snaps/development.md | 3 tests/testthat/_snaps/figure.md |only tests/testthat/_snaps/init.md | 21 tests/testthat/_snaps/markdown.md | 5 tests/testthat/_snaps/navbar.md | 4 tests/testthat/_snaps/package.md | 6 tests/testthat/_snaps/rd-example.md |only tests/testthat/_snaps/rd-html.md | 42 - tests/testthat/_snaps/render.md | 10 tests/testthat/_snaps/rmarkdown.md | 28 tests/testthat/_snaps/sitrep.md | 23 tests/testthat/_snaps/topics-external.md | 6 tests/testthat/_snaps/topics.md | 65 +- tests/testthat/_snaps/utils-yaml.md | 22 tests/testthat/assets/articles/_pkgdown.yml |only tests/testthat/assets/articles/vignettes/random.Rmd |only tests/testthat/assets/reference-selector |only tests/testthat/assets/reference/DESCRIPTION | 2 tests/testthat/assets/reference/R/funs.R | 6 tests/testthat/assets/reference/man/f.Rd |only tests/testthat/assets/search-site/sitemaps-schema-0.9.xsd | 2 tests/testthat/assets/tutorials/vignettes/tutorials/test-1/test-1.Rmd | 2 tests/testthat/setup.R |only tests/testthat/test-build-articles.R | 50 + tests/testthat/test-build-favicons.R | 5 tests/testthat/test-build-github.R | 2 tests/testthat/test-build-home-authors.R | 1 tests/testthat/test-build-home-citation.R | 2 tests/testthat/test-build-home-index.R | 11 tests/testthat/test-build-home.R | 10 tests/testthat/test-build-logo.R | 2 tests/testthat/test-build-news.R | 5 tests/testthat/test-build-redirects.R | 5 tests/testthat/test-build-reference-index.R | 20 tests/testthat/test-build-reference.R | 40 - tests/testthat/test-build-search-docs.R | 25 tests/testthat/test-check.R | 5 tests/testthat/test-figure.R | 5 tests/testthat/test-highlight.R | 2 tests/testthat/test-init.R | 14 tests/testthat/test-navbar.R | 2 tests/testthat/test-package.R | 22 tests/testthat/test-rd-example.R | 11 tests/testthat/test-rd-html.R | 21 tests/testthat/test-render.R | 37 + tests/testthat/test-repo.R | 9 tests/testthat/test-rmarkdown.R | 7 tests/testthat/test-sitrep.R | 8 tests/testthat/test-topics.R | 1 tests/testthat/test-tweak-reference.R | 8 tests/testthat/test-usage.R | 10 tests/testthat/test-utils-yaml.R | 19 vignettes/customise.Rmd | 24 vignettes/how-to-update-released-site.Rmd | 214 +++---- vignettes/pkgdown.Rmd | 7 vignettes/search.Rmd | 2 vignettes/test/jss.log |only vignettes/test/rendering.Rmd | 2 vignettes/test/widgets.Rmd | 5 157 files changed, 2334 insertions(+), 1512 deletions(-)
Title: Computes DNSLbetweenness, a Betweenness Measure that Includes
Self-Loops
Description: Computes a new measure, DNSL betweenness, via the creation
of a new graph from an existing one, duplicating nodes
with self-loops. This betweenness centrality does not drop this
essential information. Implements
Merelo & Molinari (2024) <doi:10.1007/s42001-023-00245-4>.
Author: Juan Julian Merelo-Guervos
Maintainer: Juan Julian Merelo-Guervos <jjmerelo@gmail.com>
Diff between dupNodes versions 0.2.0 dated 2024-03-17 and 0.3.0 dated 2024-04-10
DESCRIPTION | 16 +++--- MD5 | 49 +++++++++++--------- NEWS.md | 9 +++ R/DNSL.betweenness.R | 2 R/DNSLbetweenness_for_graph.R |only R/betweenness.with.duplicated.nodes.R | 2 R/utils.R |only README.md | 12 +++-- build/partial.rdb |binary inst/REFERENCES.bib | 24 +++++++++- inst/auto/REFERENCES.el | 4 + inst/doc/doges-social-network.R | 7 +- inst/doc/doges-social-network.Rmd | 7 +- inst/doc/doges-social-network.html | 69 +++++++++++++---------------- inst/doc/florentine-social-network.R | 2 inst/doc/florentine-social-network.Rmd | 6 +- inst/doc/florentine-social-network.html | 18 +++++-- inst/doges.bib | 2 man/DNSL.betweenness.Rd | 2 man/DNSLbetweenness_for_graph.Rd |only man/betweenness.with.duplicated.nodes.Rd | 10 ++-- man/dup.nodes.from.data.frame.Rd | 6 +- man/dup.nodes.from.graph.Rd | 8 ++- man/florentine.sn.Rd | 10 ++-- tests/testthat/test-dup.nodes.with.tilde.R |only tests/testthat/test-utils.R |only vignettes/doges-social-network.Rmd | 7 +- vignettes/florentine-social-network.Rmd | 6 +- 28 files changed, 166 insertions(+), 112 deletions(-)
Title: Gene-Level Variant Association Tests for Pedigree Data
Description: Gene-level variant association tests with disease status for pedigree data: kernel and burden association statistics.
Author: Schaid Daniel [aut],
Visconti Alessia [ctb],
Jason Sinnwell [aut, cre]
Maintainer: Jason Sinnwell <sinnwell.jason@mayo.edu>
Diff between pedgene versions 3.8 dated 2024-03-05 and 3.9 dated 2024-04-10
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/pedgene.R | 14 +++++++------- build/vignette.rds |binary inst/doc/pedgene.pdf |binary 5 files changed, 15 insertions(+), 15 deletions(-)
Title: Collect and Install R Packages on a Specified Date with
Dependencies
Description: Works as a virtual CRAN snapshot for source packages.
It automatically downloads and installs 'tar.gz' files with dependencies,
all of which were available on a specific day.
Author: Ryota Suzuki <suzuki@ef-prime.com>
Maintainer: Ryota Suzuki <suzuki@ef-prime.com>
Diff between dateback versions 1.0.3 dated 2023-09-03 and 1.0.4 dated 2024-04-10
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/internal.R | 6 ++++-- 3 files changed, 9 insertions(+), 7 deletions(-)
Title: Bridge to System Package Manager
Description: Enables binary package installations on Linux distributions.
Provides functions to manage packages via the distribution's package
manager. Also provides transparent integration with R's install.packages()
and a fallback mechanism. When installed as a system package, interacts
with the system's package manager without requiring administrative
privileges via an integrated D-Bus service; otherwise, uses sudo.
Currently, the following backends are supported: DNF, APT, ALPM.
Author: Inaki Ucar [aut, cph, cre]
Maintainer: Inaki Ucar <iucar@fedoraproject.org>
Diff between bspm versions 0.5.6 dated 2024-04-09 and 0.5.7 dated 2024-04-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ configure | 14 +++++++------- 4 files changed, 18 insertions(+), 13 deletions(-)
Title: Concordance Correlation Coefficient for Repeated (and
Non-Repeated) Measures
Description: Estimates the Concordance Correlation Coefficient to assess agreement. The scenarios considered are non-repeated measures, non-longitudinal repeated measures (replicates) and longitudinal repeated measures. It also includes the estimation of the one-way intraclass correlation coefficient also known as reliability index. The estimation approaches implemented are variance components and U-statistics approaches. Description of methods can be found in Fleiss (1986) <doi:10.1002/9781118032923> and Carrasco et al. (2013) <doi:10.1016/j.cmpb.2012.09.002>.
Author: Josep Lluis Carrasco <jlcarrasco@ub.edu>
Maintainer: Josep Lluis Carrasco <jlcarrasco@ub.edu>
Diff between cccrm versions 2.2.1 dated 2024-01-12 and 2.2.2 dated 2024-04-10
cccrm-2.2.1/cccrm/data/bdaw.txt.gz |only cccrm-2.2.1/cccrm/data/bfat.txt.gz |only cccrm-2.2.1/cccrm/data/bpres.txt.gz |only cccrm-2.2.2/cccrm/DESCRIPTION | 11 +++++------ cccrm-2.2.2/cccrm/MD5 | 12 ++++++------ cccrm-2.2.2/cccrm/R/extra_func.R | 1 + cccrm-2.2.2/cccrm/R/ic.icc.R | 12 +++++++----- cccrm-2.2.2/cccrm/data/bdaw.txt |only cccrm-2.2.2/cccrm/data/bfat.txt |only cccrm-2.2.2/cccrm/data/bpres.txt |only 10 files changed, 19 insertions(+), 17 deletions(-)
Title: Interface to 'Travel Time' API
Description: 'Travel Time' API <https://docs.traveltime.com/api/overview/introduction> helps users find locations by journey time rather than using ‘as the crow flies’ distance.
Time-based searching gives users more opportunities for personalisation and delivers a more relevant search.
Author: TravelTime [aut, cre]
Maintainer: TravelTime <frontend@traveltime.com>
Diff between traveltimeR versions 1.1.4 dated 2023-03-15 and 1.1.5 dated 2024-04-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/make_searches.R | 21 +++++++++++++-------- README.md | 26 +++++++++++++++++++++----- 4 files changed, 40 insertions(+), 19 deletions(-)
Title: Tools to Study Bone Compactness
Description: Bone Profiler is a scientific method and a software used to model
bone section for paleontological and ecological studies. See Girondot and Laurin
(2003) <https://www.researchgate.net/publication/280021178_Bone_profiler_A_tool_to_quantify_model_and_statistically_compare_bone-section_compactness_profiles>
and Gônet, Laurin and Girondot (2022) <https://palaeo-electronica.org/content/2022/3590-bone-section-compactness-model>.
Author: Marc Girondot <marc.girondot@gmail.com>
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between BoneProfileR versions 2.4 dated 2022-09-06 and 2.5 dated 2024-04-10
DESCRIPTION | 10 ++--- MD5 | 22 +++++------ NEWS | 5 ++ R/BP_EstimateCompactness.R | 86 +++++++++++++++++++++++++------------------ R/BP_angle.R | 25 +++++++----- R/BP_contour.R | 12 +++--- R/BP_distance.R | 17 +++++++- R/BoneProfileR-package.R | 30 ++++++++++----- data/Erinaceus_europaeus.rda |binary inst/shiny/ui.R | 2 - man/BoneProfileR-package.Rd | 35 ++++++++++++----- man/figures/E.png |binary 12 files changed, 153 insertions(+), 91 deletions(-)
Title: Seeded Sequential LDA for Topic Modeling
Description: Seeded Sequential LDA can classify sentences of texts into pre-define topics with a small number of seed words (Watanabe & Baturo, 2023) <doi:10.1177/08944393231178605>.
Implements Seeded LDA (Lu et al., 2010) <doi:10.1109/ICDMW.2011.125> and Sequential LDA (Du et al., 2012) <doi:10.1007/s10115-011-0425-1> with the distributed LDA algorithm (Newman, et al., 2009) for parallel computing.
Author: Kohei Watanabe [aut, cre, cph],
Phan Xuan-Hieu [aut, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between seededlda versions 1.1.0 dated 2023-06-30 and 1.2.0 dated 2024-04-10
DESCRIPTION | 13 +-- MD5 | 37 +++++----- NEWS.md | 9 ++ R/RcppExports.R | 8 ++ R/lda.R | 23 ++++-- R/utils.R | 16 ++++ inst |only man/textmodel_lda.Rd | 12 ++- man/textmodel_seededlda.Rd | 4 - man/textmodel_seqlda.Rd | 4 - src/Makevars | 5 - src/Makevars.win | 6 - src/RcppExports.cpp | 28 +++++++- src/array.h | 2 src/lda.cpp | 2 src/lda.h | 103 ++++++++++++++++++++---------- src/utility.cpp |only tests/testthat/test-textmodel_lda.R | 26 +++++-- tests/testthat/test-textmodel_seededlda.R | 8 +- tests/testthat/test-utils.R | 28 ++++++++ 20 files changed, 239 insertions(+), 95 deletions(-)