Title: Unit Testing for R
Description: Software testing is important, but, in part because it is
frustrating and boring, many of us avoid it. 'testthat' is a testing
framework for R that is easy to learn and use, and integrates with
your existing 'workflow'.
Author: Hadley Wickham [aut, cre],
Posit Software, PBC [cph, fnd],
R Core team [ctb] )
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between testthat versions 3.2.1 dated 2023-12-02 and 3.2.1.1 dated 2024-04-13
DESCRIPTION | 6 +++--- MD5 | 4 ++-- inst/include/testthat/testthat.h | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Translate Words or Sentences via Online Translators
Description: Useful functions to translate text for multiple languages using online translators.
For example, by translating error messages and descriptive analysis results into a language familiar
to the user, it enables a better understanding of the information, thereby reducing the barriers caused by language.
It offers several helper functions to query gene information to help interpretation of interested genes (e.g., marker genes, differential expression genes),
and provides utilities to translate 'ggplot' graphics. This package is not affiliated with any of the online translators.
The developers do not take responsibility for the invoice it incurs when using this package, especially for exceeding the free quota.
Author: Guangchuang Yu [aut, cre, cph]
,
Guannan Chen [ctb],
Difei Wang [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between fanyi versions 0.0.6 dated 2024-01-08 and 0.0.7 dated 2024-04-13
DESCRIPTION | 33 ++++++++++++++++++++++----------- MD5 | 21 ++++++++++++--------- NAMESPACE | 2 ++ NEWS.md | 7 +++++++ R/baidu.R | 2 ++ R/chatglm.r | 25 +++++++++++++++++-------- R/fanyi-package.R |only R/translate.r | 21 ++++++++++++++++++--- README.md | 30 ++++++++++++++++++++---------- man/fanyi-package.Rd |only man/fanyi_has_appkey.Rd |only man/set-translate-option.Rd | 2 +- man/translate.Rd | 3 +++ 13 files changed, 104 insertions(+), 42 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-17 0.1.17
2023-12-18 0.1.10
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-03 1.0.1
2023-09-29 1.0.0
Title: Bayesian Optimization of Hyperparameters
Description: A Pure R implementation of Bayesian Global Optimization with Gaussian Processes.
Author: Yachen Yan [aut, cre]
Maintainer: Yachen Yan <yanyachen21@gmail.com>
Diff between rBayesianOptimization versions 1.2.0 dated 2021-06-17 and 1.2.1 dated 2024-04-13
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/Utils.R | 2 +- README.md | 4 +--- man/Min_Max_Inverse_Scale_Vec.Rd | 4 ++-- man/rBayesianOptimization.Rd | 13 +++++++++++++ 6 files changed, 26 insertions(+), 15 deletions(-)
More information about rBayesianOptimization at CRAN
Permanent link
Title: Machine Learning Evaluation Metrics
Description: A collection of evaluation metrics, including loss, score and
utility functions, that measure regression, classification and ranking performance.
Author: Yachen Yan [aut, cre]
Maintainer: Yachen Yan <yanyachen21@gmail.com>
Diff between MLmetrics versions 1.1.1 dated 2016-05-13 and 1.1.3 dated 2024-04-13
DESCRIPTION | 11 MD5 | 80 ++-- NAMESPACE | 78 ++-- R/Classification.R | 923 +++++++++++++++++++++++------------------------- R/Count.R | 118 +++--- R/MLmetrics.R | 14 R/Regression.R | 440 +++++++++++----------- R/Utils.R | 102 ++--- man/AUC.Rd | 52 +- man/Accuracy.Rd | 54 +- man/Area_Under_Curve.Rd | 60 +-- man/ConfusionDF.Rd | 56 +- man/ConfusionMatrix.Rd | 54 +- man/F1_Score.Rd | 62 +-- man/FBeta_Score.Rd | 66 +-- man/GainAUC.Rd | 52 +- man/Gini.Rd | 52 +- man/KS_Stat.Rd | 52 +- man/LiftAUC.Rd | 52 +- man/LogLoss.Rd | 52 +- man/MAE.Rd | 50 +- man/MAPE.Rd | 50 +- man/MLmetrics.Rd | 24 - man/MSE.Rd | 50 +- man/MedianAE.Rd | 50 +- man/MedianAPE.Rd | 50 +- man/MultiLogLoss.Rd | 54 +- man/NormalizedGini.Rd | 54 +- man/PRAUC.Rd | 52 +- man/Poisson_LogLoss.Rd | 54 +- man/Precision.Rd | 62 +-- man/R2_Score.Rd | 50 +- man/RAE.Rd | 50 +- man/RMSE.Rd | 50 +- man/RMSLE.Rd | 50 +- man/RMSPE.Rd | 50 +- man/RRSE.Rd | 50 +- man/Recall.Rd | 62 +-- man/Sensitivity.Rd | 62 +-- man/Specificity.Rd | 62 +-- man/ZeroOneLoss.Rd | 54 +- 41 files changed, 1756 insertions(+), 1764 deletions(-)
Title: Linear Parametric Models Applied to Hydrological Series
Description: Apply Univariate Long Memory Models,
Apply Multivariate Short Memory Models To Hydrological Dataset,
Estimate Intensity Duration Frequency curve to rainfall series.
NEW -- Calculate the monthly water requirement for herbaceous and arboreal
plants.
Author: Corrado Tallerini [aut, cre],
Salvatore Grimaldi [aut]
Maintainer: Corrado Tallerini <corrado.tallerini@gmx.com>
Diff between LPM versions 3.0 dated 2024-03-10 and 3.1 dated 2024-04-13
DESCRIPTION | 8 +- MD5 | 18 +++--- R/LPM-internal.R | 152 +---------------------------------------------------- R/PWN.R | 4 - R/WNeeds.R | 6 +- man/IDFcurve.Rd | 1 man/IDFcurve2.Rd | 1 man/LPM-package.Rd | 2 man/PWN.Rd | 12 ++-- man/WNeeds.Rd | 12 ++-- 10 files changed, 38 insertions(+), 178 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A C/C++ based package for advanced data transformation and
statistical computing in R that is extremely fast, class-agnostic, robust and
programmer friendly. Core functionality includes a rich set of S3 generic grouped
and weighted statistical functions for vectors, matrices and data frames, which
provide efficient low-level vectorizations, OpenMP multithreading, and skip missing
values by default. These are integrated with fast grouping and ordering algorithms
(also callable from C), and efficient data manipulation functions. The package also
provides a flexible and rigorous approach to time series and panel data in R.
It further includes fast functions for common statistical procedures, detailed
(grouped, weighted) summary statistics, powerful tools to work with nested data,
fast data object conversions, functions for memory efficient R programming, and
helpers to effectively deal with variable labels, attributes, and missing data.
It is well integrated with base R classes, 'dplyr'/' [...truncated...]
Author: Sebastian Krantz [aut, cre] ,
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Morgan Jacob [ctb],
Dirk Eddelbuettel [ctb],
Laurent Berge [ctb],
Kevin Tappe [ctb],
R Core Team and contributors worldwide [ctb],
Martyn Plummer [cph],
1999-2016 The R Core Team [...truncated...]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 2.0.12 dated 2024-04-01 and 2.0.13 dated 2024-04-13
DESCRIPTION | 8 - MD5 | 156 ++++++++++----------- NAMESPACE | 83 ++++++++++- NEWS.md | 6 R/BY.R | 5 R/TRA.R | 5 R/fbetween_fwithin.R | 20 ++ R/fcumsum.R | 5 R/fdiff_fgrowth.R | 25 ++- R/ffirst.R | 5 R/fhdbetween_fhdwithin.R | 22 ++ R/flag.R | 37 +--- R/flast.R | 5 R/fmean.R | 5 R/fmin_fmax.R | 10 + R/fmode.R | 5 R/fndistinct.R | 7 R/fnobs.R | 6 R/fnth_fmedian.R | 8 - R/fprod.R | 5 R/fscale.R | 10 + R/fsubset_ftransform_fmutate.R | 5 R/fsum.R | 5 R/fvar_fsd.R | 10 + R/qsu.R | 5 R/rsplit.R | 4 R/small_helper.R | 3 R/varying.R | 5 inst/doc/collapse_documentation.html | 4 inst/doc/collapse_for_tidyverse_users.R | 6 inst/doc/collapse_for_tidyverse_users.html | 4 inst/doc/collapse_object_handling.R | 2 inst/doc/collapse_object_handling.Rmd | 16 +- inst/doc/collapse_object_handling.html | 99 +++++++------ src/fnth_fmedian_fquantile.c | 1 src/match.c | 10 - tests/testthat/test-BY.R | 2 tests/testthat/test-GRP.R | 2 tests/testthat/test-TRA.R | 2 tests/testthat/test-attribute-handling.R | 2 tests/testthat/test-collap.R | 2 tests/testthat/test-dapply.R | 2 tests/testthat/test-data.table.R | 2 tests/testthat/test-fHDbetween-fHDwithin-HDB-HDW.R | 2 tests/testthat/test-fNobs-fNdistinct.R | 2 tests/testthat/test-fbetween-fwithin-B-W.R | 2 tests/testthat/test-fcumsum.R | 2 tests/testthat/test-fdiff-fgrowth-D-G.R | 2 tests/testthat/test-ffirst-flast.R | 2 tests/testthat/test-flag-L-F.R | 2 tests/testthat/test-flm-fFtest.R | 2 tests/testthat/test-fmean.R | 2 tests/testthat/test-fmedian.R | 2 tests/testthat/test-fmin-fmax.R | 2 tests/testthat/test-fmode.R | 2 tests/testthat/test-fmutate.R | 2 tests/testthat/test-fprod.R | 2 tests/testthat/test-fscale-STD.R | 2 tests/testthat/test-fsubset-ftransform.R | 2 tests/testthat/test-fsum.R | 2 tests/testthat/test-fvar-fsd.R | 2 tests/testthat/test-indexing.R | 2 tests/testthat/test-list-processing.R | 2 tests/testthat/test-misc.R | 33 +++- tests/testthat/test-miscellaneous-issues.R | 2 tests/testthat/test-psmat-psacf.R | 2 tests/testthat/test-qsu.R | 2 tests/testthat/test-qtab.R | 2 tests/testthat/test-quick-conversion.R | 2 tests/testthat/test-recode-replace.R | 2 tests/testthat/test-roworder-colorder-rename.R | 2 tests/testthat/test-select-replace-vars.R | 2 tests/testthat/test-seqid-groupid.R | 2 tests/testthat/test-setop.R | 2 tests/testthat/test-sf.R | 2 tests/testthat/test-splitting.R | 2 tests/testthat/test-varying.R | 2 tests/testthat/test-whichv.R | 2 vignettes/collapse_object_handling.Rmd | 16 +- 79 files changed, 486 insertions(+), 262 deletions(-)
Title: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis
Tests
Description: Compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 100 classes of statistical and machine learning models in R. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference.
Author: Vincent Arel-Bundock [aut, cre, cph]
,
Noah Greifer [ctb] ,
Etienne Bacher [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between marginaleffects versions 0.18.0 dated 2024-02-05 and 0.19.0 dated 2024-04-13
marginaleffects-0.18.0/marginaleffects/R/get_averages.R |only marginaleffects-0.18.0/marginaleffects/R/methods_inferences_simulation.R |only marginaleffects-0.18.0/marginaleffects/inst/tinytest |only marginaleffects-0.18.0/marginaleffects/man/get_averages.Rd |only marginaleffects-0.19.0/marginaleffects/DESCRIPTION | 64 +- marginaleffects-0.19.0/marginaleffects/MD5 | 253 ++-------- marginaleffects-0.19.0/marginaleffects/NAMESPACE | 11 marginaleffects-0.19.0/marginaleffects/NEWS.md | 36 + marginaleffects-0.19.0/marginaleffects/R/bootstrap_rsample.R | 4 marginaleffects-0.19.0/marginaleffects/R/bootstrap_simulation.R |only marginaleffects-0.19.0/marginaleffects/R/ci.R | 11 marginaleffects-0.19.0/marginaleffects/R/comparisons.R | 24 marginaleffects-0.19.0/marginaleffects/R/datagrid.R | 59 ++ marginaleffects-0.19.0/marginaleffects/R/deprecated.R | 9 marginaleffects-0.19.0/marginaleffects/R/get_contrast_data.R | 2 marginaleffects-0.19.0/marginaleffects/R/get_contrast_data_factor.R | 2 marginaleffects-0.19.0/marginaleffects/R/get_contrasts.R | 5 marginaleffects-0.19.0/marginaleffects/R/get_hypothesis.R | 52 +- marginaleffects-0.19.0/marginaleffects/R/get_jacobian.R | 31 - marginaleffects-0.19.0/marginaleffects/R/get_modeldata.R | 24 marginaleffects-0.19.0/marginaleffects/R/get_se_delta.R | 6 marginaleffects-0.19.0/marginaleffects/R/get_vcov.R | 2 marginaleffects-0.19.0/marginaleffects/R/hypotheses.R | 176 +++--- marginaleffects-0.19.0/marginaleffects/R/hypotheses_joint.R | 32 - marginaleffects-0.19.0/marginaleffects/R/inferences.R | 10 marginaleffects-0.19.0/marginaleffects/R/methods_flexsurv.R |only marginaleffects-0.19.0/marginaleffects/R/methods_glmmTMB.R | 65 +- marginaleffects-0.19.0/marginaleffects/R/methods_lme4.R | 11 marginaleffects-0.19.0/marginaleffects/R/methods_survey.R | 4 marginaleffects-0.19.0/marginaleffects/R/plot_comparisons.R | 6 marginaleffects-0.19.0/marginaleffects/R/plot_predictions.R | 6 marginaleffects-0.19.0/marginaleffects/R/plot_slopes.R | 2 marginaleffects-0.19.0/marginaleffects/R/predictions.R | 20 marginaleffects-0.19.0/marginaleffects/R/print.R | 77 ++- marginaleffects-0.19.0/marginaleffects/R/sanitize_hypothesis.R | 1 marginaleffects-0.19.0/marginaleffects/R/sanitize_newdata.R | 64 +- marginaleffects-0.19.0/marginaleffects/R/sanity_dots.R | 7 marginaleffects-0.19.0/marginaleffects/R/sanity_model.R | 2 marginaleffects-0.19.0/marginaleffects/R/slopes.R | 25 marginaleffects-0.19.0/marginaleffects/R/type_dictionary.R | 11 marginaleffects-0.19.0/marginaleffects/README.md | 25 marginaleffects-0.19.0/marginaleffects/inst/WORDLIST | 223 ++++---- marginaleffects-0.19.0/marginaleffects/man/comparisons.Rd | 69 ++ marginaleffects-0.19.0/marginaleffects/man/datagrid.Rd | 5 marginaleffects-0.19.0/marginaleffects/man/figures/marginaleffects_logo_word.svg |only marginaleffects-0.19.0/marginaleffects/man/figures/mfx_slopes.png |only marginaleffects-0.19.0/marginaleffects/man/get_model_matrix.Rd | 2 marginaleffects-0.19.0/marginaleffects/man/get_predict.Rd | 20 marginaleffects-0.19.0/marginaleffects/man/get_vcov.Rd | 7 marginaleffects-0.19.0/marginaleffects/man/hypotheses.Rd | 37 - marginaleffects-0.19.0/marginaleffects/man/knit_print.marginaleffects.Rd |only marginaleffects-0.19.0/marginaleffects/man/plot_comparisons.Rd | 6 marginaleffects-0.19.0/marginaleffects/man/plot_predictions.Rd | 8 marginaleffects-0.19.0/marginaleffects/man/plot_slopes.Rd | 6 marginaleffects-0.19.0/marginaleffects/man/predictions.Rd | 67 ++ marginaleffects-0.19.0/marginaleffects/man/print.marginaleffects.Rd | 6 marginaleffects-0.19.0/marginaleffects/man/sanitize_model_specific.Rd | 23 marginaleffects-0.19.0/marginaleffects/man/set_coef.Rd | 12 marginaleffects-0.19.0/marginaleffects/man/slopes.Rd | 67 ++ marginaleffects-0.19.0/marginaleffects/tests/tinytest.R | 4 60 files changed, 1006 insertions(+), 695 deletions(-)
More information about marginaleffects at CRAN
Permanent link
Title: Floristic Quality Assessment Tools for R
Description: Tools for downloading and analyzing floristic quality assessment data.
See Freyman et al. (2015) <doi:10.1111/2041-210X.12491> for more information
about floristic quality assessment and the associated database.
Author: Andrew Gard [aut, cre] ,
Alexia Myers [aut],
Irene Luwabelwa [aut]
Maintainer: Andrew Gard <agard@lakeforest.edu>
Diff between fqar versions 0.5.2 dated 2024-04-09 and 0.5.3 dated 2024-04-13
DESCRIPTION | 6 - MD5 | 68 ++++++------ NAMESPACE | 3 NEWS.md | 8 + R/assessment_glance.R | 104 +++++++++---------- R/download_assessment_list.R | 6 - R/download_transect_list.R | 3 R/transect_subplot_inventories.R | 3 man/assessment_glance.Rd | 104 +++++++++---------- tests/testthat/test-database_glance.R | 5 tests/testthat/test-database_inventory.R | 2 tests/testthat/test-download_assessment.R | 6 - tests/testthat/test-download_assessment_list.R | 10 - tests/testthat/test-download_database.R | 4 tests/testthat/test-download_transect.R | 2 tests/testthat/test-download_transect_list.R | 4 tests/testthat/test-index_fqa_assessments.R | 4 tests/testthat/test-index_fqa_assessments_internal.R | 2 tests/testthat/test-index_fqa_databases.R | 4 tests/testthat/test-index_fqa_databases_internal.R | 2 tests/testthat/test-index_fqa_transects.R | 2 tests/testthat/test-index_fqa_transects_internal.R | 2 tests/testthat/test-is_inventory.R | 6 - tests/testthat/test-species_acronym.R | 9 - tests/testthat/test-species_c.R | 7 - tests/testthat/test-species_common_name.R | 11 -- tests/testthat/test-species_nativity.R | 9 - tests/testthat/test-species_phys.R | 8 - tests/testthat/test-species_w.R | 7 - tests/testthat/test-transect_glance.R | 36 ++---- tests/testthat/test-transect_inventory.R | 15 +- tests/testthat/test-transect_list_glance.R | 9 - tests/testthat/test-transect_list_inventory.R | 7 - tests/testthat/test-transect_phys.R | 22 +--- tests/testthat/test-transect_subplot_inventories.R | 5 35 files changed, 213 insertions(+), 292 deletions(-)
Title: Formula-Driven Table Generation
Description: Computes and displays complex tables of summary statistics.
Output may be in LaTeX, HTML, plain text, or an R
matrix for further processing.
Author: Duncan Murdoch
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between tables versions 0.9.17 dated 2023-05-02 and 0.9.25 dated 2024-04-13
DESCRIPTION | 8 MD5 | 55 ++-- NAMESPACE | 2 NEWS.md | 11 R/All.R | 110 +++------ R/Paste.R | 16 - R/PlusMinus.R | 43 ++- R/deparse.R |only R/latex.tabular.R | 5 R/table.R | 2 R/tables_mform.R | 9 R/tabular.R | 4 R/toTinytable.R |only README.md | 78 +++--- build/vignette.rds |binary inst/doc/HTML.R | 11 inst/doc/HTML.Rmd | 23 +- inst/doc/HTML.html | 514 ++++++++++++++++++++++++++++++++++----------- inst/doc/knitrTables.Rmd | 13 - inst/doc/knitrTables.pdf |binary inst/doc/tables.R | 4 inst/doc/tables.Rnw | 8 inst/doc/tables.pdf |binary man/Paste.Rd | 11 man/latex.tabular.Rd | 4 man/toTinytable.Rd |only vignettes/HTML.Rmd | 23 +- vignettes/knitrTables.Rmd | 13 - vignettes/tables.Rnw | 8 vignettes/tables.Rout.save | 5 30 files changed, 671 insertions(+), 309 deletions(-)
Title: Make 'Mirai' 'Promises'
Description: Allows 'mirai' objects encapsulating asynchronous computations,
from the 'mirai' package by Gao (2023) <doi:10.5281/zenodo.7912722>, to be
used interchangeably with 'promise' objects from the 'promises' package by
Cheng (2021) <https://CRAN.R-project.org/package=promises>. This facilitates
their use with packages 'plumber' by Schloerke and Allen (2022)
<https://CRAN.R-project.org/package=plumber> and 'shiny' by Cheng, Allaire,
Sievert, Schloerke, Xie, Allen, McPherson, Dipert and Borges (2022)
<https://CRAN.R-project.org/package=shiny>.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between mirai.promises versions 0.4.1 dated 2023-12-05 and 0.5.0 dated 2024-04-13
DESCRIPTION | 12 +++--- MD5 | 16 ++++----- NAMESPACE | 3 + NEWS.md | 6 +++ R/core.R | 74 ++++++++++++++++++++++-------------------- README.md | 7 ++- inst/CITATION | 2 - man/mirai.promises-package.Rd | 16 ++++----- tests/tests.R | 16 +++++---- 9 files changed, 85 insertions(+), 67 deletions(-)
More information about mirai.promises at CRAN
Permanent link
Title: Yet Another TAxonomy Handler
Description: Provides functions to manage taxonomy when lineages are
described with strings and ranks separated with special patterns like
"|*__" or ";*__".
Author: Antoine Bichat [aut, cre]
Maintainer: Antoine Bichat <antoine.bichat@proton.me>
Diff between yatah versions 0.2.1 dated 2022-11-12 and 1.0.0 dated 2024-04-13
yatah-0.2.1/yatah/R/abundances.R |only yatah-0.2.1/yatah/R/extract.R |only yatah-0.2.1/yatah/man/all_clades.Rd |only yatah-0.2.1/yatah/man/last_clade.Rd |only yatah-0.2.1/yatah/man/last_rank.Rd |only yatah-1.0.0/yatah/DESCRIPTION | 10 yatah-1.0.0/yatah/MD5 | 60 +- yatah-1.0.0/yatah/NAMESPACE | 6 yatah-1.0.0/yatah/NEWS.md | 9 yatah-1.0.0/yatah/R/data.R |only yatah-1.0.0/yatah/R/deprecated.R |only yatah-1.0.0/yatah/R/get.R |only yatah-1.0.0/yatah/R/is_tests.R | 29 - yatah-1.0.0/yatah/R/trim.R | 12 yatah-1.0.0/yatah/README.md | 73 +-- yatah-1.0.0/yatah/build/partial.rdb |binary yatah-1.0.0/yatah/build/vignette.rds |binary yatah-1.0.0/yatah/data/all_ranks.rda |only yatah-1.0.0/yatah/inst/WORDLIST | 3 yatah-1.0.0/yatah/inst/doc/gammaproteobacteria.R | 4 yatah-1.0.0/yatah/inst/doc/gammaproteobacteria.Rmd | 6 yatah-1.0.0/yatah/inst/doc/gammaproteobacteria.html | 314 ++++++------- yatah-1.0.0/yatah/man/abundances.Rd | 2 yatah-1.0.0/yatah/man/all_ranks.Rd |only yatah-1.0.0/yatah/man/deprecated.Rd |only yatah-1.0.0/yatah/man/get_all_clades.Rd |only yatah-1.0.0/yatah/man/get_clade.Rd |only yatah-1.0.0/yatah/man/get_last_clade.Rd |only yatah-1.0.0/yatah/man/get_last_rank.Rd |only yatah-1.0.0/yatah/man/is_clade.Rd | 7 yatah-1.0.0/yatah/man/is_rank.Rd | 10 yatah-1.0.0/yatah/man/trim_rank.Rd | 8 yatah-1.0.0/yatah/man/trim_void.Rd | 2 yatah-1.0.0/yatah/tests/testthat/test-deprecated.R |only yatah-1.0.0/yatah/tests/testthat/test-lineage.R | 8 yatah-1.0.0/yatah/tests/testthat/test-previous_outputs.R | 12 yatah-1.0.0/yatah/tests/testthat/test-ranks.R | 109 +++- yatah-1.0.0/yatah/tests/testthat/test-special_characters.R | 12 yatah-1.0.0/yatah/vignettes/gammaproteobacteria.Rmd | 6 39 files changed, 396 insertions(+), 306 deletions(-)
Title: Matching on Generalized Propensity Scores with Continuous
Exposures
Description: Provides a framework for estimating causal effects of a continuous
exposure using observational data, and implementing matching and weighting
on the generalized propensity score.
Wu, X., Mealli, F., Kioumourtzoglou, M.A., Dominici, F. and Braun, D., 2022.
Matching on generalized propensity scores with continuous exposures. Journal
of the American Statistical Association, pp.1-29.
Author: Naeem Khoshnevis [aut, cre] ,
Xiao Wu [aut] ,
Danielle Braun [aut]
Maintainer: Naeem Khoshnevis <nkhoshnevis@g.harvard.edu>
Diff between CausalGPS versions 0.4.1 dated 2023-09-29 and 0.4.2 dated 2024-04-13
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- NEWS.md | 7 +++++++ R/zzz.R | 10 +++++++++- README.md | 28 +++++++++++++++++++++++++++- inst/CITATION | 15 +++++++++------ tests/testthat/CausalGPS.log |only 7 files changed, 64 insertions(+), 19 deletions(-)
Title: Spatial Dynamic Panel Data Modeling
Description: Spatial model calculation for static and dynamic panel data models, weights matrix creation and Bayesian model comparison.
Bayesian model comparison methods were described by 'LeSage' (2014) <doi:10.1016/j.spasta.2014.02.002>.
The 'Lee'-'Yu' transformation approach is described in 'Yu', 'De Jong' and 'Lee' (2008) <doi:10.1016/j.jeconom.2008.08.002>, 'Lee' and 'Yu' (2010) <doi:10.1016/j.jeconom.2009.08.001> and 'Lee' and 'Yu' (2010) <doi:10.1017/S0266466609100099>.
Author: Rozeta Simonovska [aut, cre]
Maintainer: Rozeta Simonovska <simonovska.r@gmail.com>
Diff between SDPDmod versions 0.0.4 dated 2024-03-04 and 0.0.5 dated 2024-04-13
DESCRIPTION | 8 - MD5 | 52 +++++---- NAMESPACE | 5 NEWS.md | 14 ++ R/SDPDm.R | 29 +++-- R/blmpSDPD.R | 19 ++- R/coef.SDPDm.R | 5 R/print.SDPDm.R |only R/print.blmpSDPD.R |only R/print.summary.SDPDm.R |only R/print.summary.impactsSDPDm.R |only R/summary.SDPDm.R | 25 +--- R/summary.impactsSDPDm.R | 126 +++++++++++++---------- inst/doc/spatial_model.Rmd | 2 inst/doc/spatial_model.html | 16 +-- man/ExpDistMat.Rd | 86 ++++++++-------- man/SDPDm.Rd | 20 ++- man/blmpSDPD.Rd | 14 +- man/coef.SDPDm.Rd | 2 man/eignor.Rd | 60 +++++------ man/gN3dist.Rd | 32 +++--- man/mNearestN.Rd | 70 ++++++------- man/print.SDPDm.Rd |only man/print.blmpSDPD.Rd |only man/print.summary.SDPDm.Rd |only man/print.summary.impactsSDPDm.Rd |only man/summary.SDPDm.Rd | 50 ++++----- man/summary.impactsSDPDm.Rd | 2 man/usa46.Rd | 32 +++--- vignettes/bibliography.bib | 202 +++++++++++++++++++------------------- vignettes/spatial_model.Rmd | 2 31 files changed, 467 insertions(+), 406 deletions(-)
Title: Asymptotic Timing
Description: Computing and visualizing comparative
asymptotic timings of different algorithms and code versions.
Also includes functionality for comparing empirical timings with
expected references such as linear or quadratic,
<https://en.wikipedia.org/wiki/Asymptotic_computational_complexity>
Also includes functionality for measuring asymptotic memory and other
quantities.
Author: Toby Hocking [aut, cre]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between atime versions 2024.3.5 dated 2024-03-08 and 2024.4.12 dated 2024-04-13
atime-2024.3.5/atime/vignettes/binseg.html |only atime-2024.3.5/atime/vignettes/compare-data.table-tidyverse.html |only atime-2024.4.12/atime/DESCRIPTION | 6 atime-2024.4.12/atime/MD5 | 78 - atime-2024.4.12/atime/NAMESPACE | 38 atime-2024.4.12/atime/NEWS | 193 +- atime-2024.4.12/atime/R/atime.R | 436 ++--- atime-2024.4.12/atime/R/predict.R | 230 +-- atime-2024.4.12/atime/R/references.R | 358 ++-- atime-2024.4.12/atime/R/versions.R | 722 ++++----- atime-2024.4.12/atime/build/vignette.rds |binary atime-2024.4.12/atime/inst/doc/Custom_Plots.R | 144 - atime-2024.4.12/atime/inst/doc/Custom_Plots.Rmd | 204 +- atime-2024.4.12/atime/inst/doc/Custom_Plots.html | 507 +++--- atime-2024.4.12/atime/inst/doc/Custom_References.R | 114 - atime-2024.4.12/atime/inst/doc/Custom_References.Rmd | 250 +-- atime-2024.4.12/atime/inst/doc/Custom_References.html | 546 +++---- atime-2024.4.12/atime/inst/doc/Custom_Units.R | 108 - atime-2024.4.12/atime/inst/doc/Custom_Units.Rmd | 220 +- atime-2024.4.12/atime/inst/doc/Custom_Units.html | 517 +++--- atime-2024.4.12/atime/inst/doc/cum_median.R | 62 atime-2024.4.12/atime/inst/doc/cum_median.Rmd | 108 - atime-2024.4.12/atime/inst/doc/cum_median.html | 407 ++--- atime-2024.4.12/atime/inst/doc/regex.R | 128 - atime-2024.4.12/atime/inst/doc/regex.Rmd | 196 +- atime-2024.4.12/atime/inst/doc/regex.html | 524 +++---- atime-2024.4.12/atime/man/atime.Rd | 128 - atime-2024.4.12/atime/man/atime_grid.Rd | 172 +- atime-2024.4.12/atime/man/atime_pkg.Rd | 108 - atime-2024.4.12/atime/man/atime_versions.Rd | 172 +- atime-2024.4.12/atime/man/atime_versions_exprs.Rd | 174 +- atime-2024.4.12/atime/man/atime_versions_remove.Rd | 26 atime-2024.4.12/atime/man/glob_find_replace.Rd | 38 atime-2024.4.12/atime/man/references_best.Rd | 84 - atime-2024.4.12/atime/tests/testthat.R | 2 atime-2024.4.12/atime/tests/testthat/test-CRAN.R | 746 +++++----- atime-2024.4.12/atime/vignettes/Custom_Plots.Rmd | 204 +- atime-2024.4.12/atime/vignettes/Custom_References.Rmd | 250 +-- atime-2024.4.12/atime/vignettes/Custom_Units.Rmd | 220 +- atime-2024.4.12/atime/vignettes/cum_median.Rmd | 108 - atime-2024.4.12/atime/vignettes/regex.Rmd | 196 +- 41 files changed, 4365 insertions(+), 4359 deletions(-)
Title: Interface to 'Keras Tuner'
Description: 'Keras Tuner' <https://keras-team.github.io/keras-tuner/> is a hypertuning framework made for humans.
It aims at making the life of AI practitioners, hypertuner
algorithm creators and model designers as simple as possible by
providing them with a clean and easy to use API for hypertuning.
'Keras Tuner' makes moving from a base model to a hypertuned one quick and
easy by only requiring you to change a few lines of code.
Author: Turgut Abdullayev [aut, cre],
Google Inc. [cph]
Maintainer: Turgut Abdullayev <turqut.a.314@gmail.com>
Diff between kerastuneR versions 0.1.0.6 dated 2023-09-03 and 0.1.0.7 dated 2024-04-13
DESCRIPTION | 10 MD5 | 156 ++--- NAMESPACE | 102 +-- R/BaseTuner.R | 94 +-- R/HyperResNet_HyperXception.R | 314 +++++------ R/Hyperclass.R | 224 ++++---- R/bayesian_optimisation.R | 158 ++--- R/generate_sticker.R | 24 R/install.R | 116 ++-- R/oracle.R | 112 ++-- R/package.R | 24 R/plot_keras_model.R | 68 +- R/plot_tuner.R | 232 ++++---- R/random_search.R | 173 +++--- R/reexports.R | 28 - R/save_load.R | 72 +- R/search.R | 286 +++++----- R/search_summary.R | 48 - R/tensorboard.R | 132 ++-- R/tuner_callback.R | 78 +- R/version.R | 12 README.md | 532 +++++++++---------- build/vignette.rds |binary inst/doc/BayesianOptimisation.R | 266 ++++----- inst/doc/BayesianOptimisation.Rmd | 314 +++++------ inst/doc/BayesianOptimisation.html | 1016 ++++++++++++++++++------------------- inst/doc/HyperModel_subclass.R | 192 +++--- inst/doc/HyperModel_subclass.Rmd | 232 ++++---- inst/doc/HyperModel_subclass.html | 918 ++++++++++++++++----------------- inst/doc/Introduction.R | 6 inst/doc/Introduction.Rmd | 224 ++++---- inst/doc/Introduction.html | 696 ++++++++++++------------- inst/doc/MNIST.R | 166 +++--- inst/doc/MNIST.Rmd | 290 +++++----- inst/doc/MNIST.html | 950 +++++++++++++++++----------------- inst/doc/best_practice.R | 204 +++---- inst/doc/best_practice.Rmd | 240 ++++---- inst/doc/best_practice.html | 912 ++++++++++++++++----------------- man/BaseTuner.Rd | 108 +-- man/BayesianOptimization.Rd | 126 ++-- man/HyperModel_class.Rd | 42 - man/HyperParameters.Rd | 36 - man/HyperResNet.Rd | 124 ++-- man/HyperXception.Rd | 70 +- man/Hyperband.Rd | 120 ++-- man/Objective.Rd | 44 - man/Oracle.Rd | 102 +-- man/RandomSearch.Rd | 168 +++--- man/TensorBoard.Rd | 138 ++--- man/Tuner_class.Rd | 162 ++--- man/callback_tuner.Rd | 82 +- man/fit_tuner.Rd | 228 ++++---- man/get_best_models.Rd | 46 - man/install_kerastuner.Rd | 62 +- man/keras_tuner_version.Rd | 28 - man/load_model.Rd | 42 - man/plot_keras_model.Rd | 76 +- man/plot_tuner.Rd | 52 - man/reexports.Rd | 54 - man/results_summary.Rd | 38 - man/save_model.Rd | 50 - man/search_summary.Rd | 34 - tests/testthat.R | 16 tests/testthat/test-BayesOptim.R | 255 ++++----- tests/testthat/test-MNIST-conv.R | 189 +++--- tests/testthat/test-build.R | 163 ++--- tests/testthat/test-hp-space.R | 125 ++-- tests/testthat/test-hyper_class.R | 121 ++-- tests/testthat/test-resnet.R | 82 +- tests/testthat/utils.R | 46 - vignettes/BayesianOptimisation.Rmd | 314 +++++------ vignettes/BayesianOptimisation.md | 304 +++++------ vignettes/HyperModel_subclass.Rmd | 232 ++++---- vignettes/HyperModel_subclass.md | 228 ++++---- vignettes/Introduction.Rmd | 224 ++++---- vignettes/Introduction.md | 220 ++++---- vignettes/MNIST.Rmd | 290 +++++----- vignettes/MNIST.md | 286 +++++----- vignettes/best_practice.Rmd | 240 ++++---- 79 files changed, 7489 insertions(+), 7499 deletions(-)
Title: Create a Flexible Forest Plot
Description: Create a forest plot based on the layout of the data. Confidence intervals in multiple columns by groups can be done easily. Editing the plot, inserting/adding text, applying a theme to the plot, and much more.
Author: Alimu Dayimu [aut, cre]
Maintainer: Alimu Dayimu <ad938@cam.ac.uk>
Diff between forestploter versions 1.1.1 dated 2023-09-23 and 1.1.2 dated 2024-04-13
forestploter-1.1.1/forestploter/man/forestploter.Rd |only forestploter-1.1.2/forestploter/DESCRIPTION | 10 forestploter-1.1.2/forestploter/MD5 | 102 forestploter-1.1.2/forestploter/NEWS.md | 7 forestploter-1.1.2/forestploter/R/check_errors.r | 25 forestploter-1.1.2/forestploter/R/forest.R | 1266 +++++----- forestploter-1.1.2/forestploter/R/forestploter.R | 18 forestploter-1.1.2/forestploter/R/legend_grob.R | 3 forestploter-1.1.2/forestploter/R/make-xaixs.R | 152 - forestploter-1.1.2/forestploter/R/makeci.R | 4 forestploter-1.1.2/forestploter/R/theme.R | 775 +++--- forestploter-1.1.2/forestploter/R/utils.R | 8 forestploter-1.1.2/forestploter/README.md | 46 forestploter-1.1.2/forestploter/build/vignette.rds |binary forestploter-1.1.2/forestploter/inst/doc/forestploter-intro.R | 77 forestploter-1.1.2/forestploter/inst/doc/forestploter-intro.Rmd | 877 +++--- forestploter-1.1.2/forestploter/inst/doc/forestploter-intro.html | 586 ++-- forestploter-1.1.2/forestploter/inst/doc/forestploter-post.R | 20 forestploter-1.1.2/forestploter/inst/doc/forestploter-post.Rmd | 46 forestploter-1.1.2/forestploter/inst/doc/forestploter-post.html | 96 forestploter-1.1.2/forestploter/inst/examples/forestplot-example.r | 6 forestploter-1.1.2/forestploter/man/check_errors.Rd | 4 forestploter-1.1.2/forestploter/man/figures/README-edit-1.png |binary forestploter-1.1.2/forestploter/man/figures/README-example-1.png |binary forestploter-1.1.2/forestploter/man/figures/README-multiple-1.png |binary forestploter-1.1.2/forestploter/man/forest.Rd | 10 forestploter-1.1.2/forestploter/man/forest_theme.Rd | 82 forestploter-1.1.2/forestploter/man/forestploter-package.Rd |only forestploter-1.1.2/forestploter/man/make_summary.Rd | 4 forestploter-1.1.2/forestploter/man/make_xaxis.Rd | 3 forestploter-1.1.2/forestploter/tests/testthat/Rplots.pdf |binary forestploter-1.1.2/forestploter/tests/testthat/_snaps/addgrob/add-grob-body.svg | 6 forestploter-1.1.2/forestploter/tests/testthat/_snaps/addgrob/add-grob-header.svg | 6 forestploter-1.1.2/forestploter/tests/testthat/_snaps/forest/arrow-end.svg | 6 forestploter-1.1.2/forestploter/tests/testthat/_snaps/forest/arrow-start.svg | 6 forestploter-1.1.2/forestploter/tests/testthat/_snaps/forest/different-sizes.svg | 2 forestploter-1.1.2/forestploter/tests/testthat/_snaps/forest/edit-plot-with-theme.svg | 2 forestploter-1.1.2/forestploter/tests/testthat/_snaps/forest/insert-text-vector.svg | 2 forestploter-1.1.2/forestploter/tests/testthat/_snaps/forest/multiple-columns-and-multi-parameters.svg | 12 forestploter-1.1.2/forestploter/tests/testthat/_snaps/forest/multiple-columns.svg | 4 forestploter-1.1.2/forestploter/tests/testthat/_snaps/forest/multiple-groups.svg | 2 forestploter-1.1.2/forestploter/tests/testthat/_snaps/forest/simple-forest-plot-with-theme.svg | 2 forestploter-1.1.2/forestploter/tests/testthat/_snaps/forest/simple-forest-plot.svg | 2 forestploter-1.1.2/forestploter/tests/testthat/_snaps/forest/summary-ci.svg | 2 forestploter-1.1.2/forestploter/tests/testthat/_snaps/forest/x-scale-log10.svg | 9 forestploter-1.1.2/forestploter/tests/testthat/_snaps/forest/x-scale-log2.svg | 4 forestploter-1.1.2/forestploter/tests/testthat/_snaps/make-boxplot/boxplot-groups.svg | 2 forestploter-1.1.2/forestploter/tests/testthat/_snaps/make-boxplot/boxplot-single.svg | 2 forestploter-1.1.2/forestploter/tests/testthat/test-addgrob.R | 170 - forestploter-1.1.2/forestploter/tests/testthat/test-forest.R | 3 forestploter-1.1.2/forestploter/tests/testthat/test-theme.R | 4 forestploter-1.1.2/forestploter/vignettes/forestploter-intro.Rmd | 877 +++--- forestploter-1.1.2/forestploter/vignettes/forestploter-post.Rmd | 46 53 files changed, 2862 insertions(+), 2536 deletions(-)
Title: Tools for Wikidata and Wikipedia
Description: A set of wrappers intended to check, read and download information from the Wikimedia sources. It is specifically created to work with names of celebrities, in which case their information and statistics can be downloaded. Additionally, it also builds links and snippets to use in combination with the function gallery() in netCoin package.
Author: Modesto Escobar [aut, cph, cre]
,
Angel Zazo [aut],
Carlos Prieto [aut] ,
David Barrios [aut],
Cristina Calvo [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between wikiTools versions 0.0.6 dated 2022-03-25 and 1.2.4 dated 2024-04-13
wikiTools-0.0.6/wikiTools/man/GetWikidataitem.Rd |only wikiTools-0.0.6/wikiTools/man/Wikidata_Wikipedias.Rd |only wikiTools-0.0.6/wikiTools/man/Wikidata_occupationCount.Rd |only wikiTools-0.0.6/wikiTools/man/Wikidata_sparql_query.Rd |only wikiTools-0.0.6/wikiTools/man/Wikimedia_get_redirects.Rd |only wikiTools-0.0.6/wikiTools/man/Wikimedia_page_views.Rd |only wikiTools-0.0.6/wikiTools/man/Wikimedia_person_exists.Rd |only wikiTools-0.0.6/wikiTools/man/Wikimedia_query.Rd |only wikiTools-0.0.6/wikiTools/man/get_template.Rd |only wikiTools-0.0.6/wikiTools/man/get_template_for_maps.Rd |only wikiTools-0.0.6/wikiTools/man/limit_requester.Rd |only wikiTools-0.0.6/wikiTools/man/req_WDQS.Rd |only wikiTools-0.0.6/wikiTools/man/req_wikimedia_metrics.Rd |only wikiTools-0.0.6/wikiTools/man/wmflabs_get_allinfo.Rd |only wikiTools-1.2.4/wikiTools/DESCRIPTION | 15 wikiTools-1.2.4/wikiTools/MD5 | 65 wikiTools-1.2.4/wikiTools/NAMESPACE | 35 wikiTools-1.2.4/wikiTools/R/wikiTools.R | 205 - wikiTools-1.2.4/wikiTools/R/wiki_utils.R | 2666 ++++++++++++-- wikiTools-1.2.4/wikiTools/build |only wikiTools-1.2.4/wikiTools/inst |only wikiTools-1.2.4/wikiTools/man/cc.Rd | 58 wikiTools-1.2.4/wikiTools/man/checkTitles.Rd |only wikiTools-1.2.4/wikiTools/man/extractWiki.Rd | 2 wikiTools-1.2.4/wikiTools/man/getWikiData.Rd | 2 wikiTools-1.2.4/wikiTools/man/getWikiInf.Rd | 68 wikiTools-1.2.4/wikiTools/man/httrGetJSON.Rd |only wikiTools-1.2.4/wikiTools/man/limitRequester.Rd |only wikiTools-1.2.4/wikiTools/man/m_Opensearch.Rd |only wikiTools-1.2.4/wikiTools/man/m_Pageviews.Rd |only wikiTools-1.2.4/wikiTools/man/m_XtoolsInfo.Rd |only wikiTools-1.2.4/wikiTools/man/m_reqMediaWiki.Rd |only wikiTools-1.2.4/wikiTools/man/nametoWikiHtml.Rd | 70 wikiTools-1.2.4/wikiTools/man/normalizedTitle.Rd |only wikiTools-1.2.4/wikiTools/man/reqMediaWiki.Rd |only wikiTools-1.2.4/wikiTools/man/reqWDQS.Rd |only wikiTools-1.2.4/wikiTools/man/urltoFrame.Rd | 70 wikiTools-1.2.4/wikiTools/man/urltoHtml.Rd | 2 wikiTools-1.2.4/wikiTools/man/user_agent.Rd |only wikiTools-1.2.4/wikiTools/man/v_AutoSuggest.Rd |only wikiTools-1.2.4/wikiTools/man/v_Extract.Rd |only wikiTools-1.2.4/wikiTools/man/v_GetRecord.Rd |only wikiTools-1.2.4/wikiTools/man/v_Search.Rd |only wikiTools-1.2.4/wikiTools/man/w_EntityInfo.Rd |only wikiTools-1.2.4/wikiTools/man/w_IdentifiersOfAuthority.Rd |only wikiTools-1.2.4/wikiTools/man/w_OccupationEntities.Rd |only wikiTools-1.2.4/wikiTools/man/w_Property.Rd |only wikiTools-1.2.4/wikiTools/man/w_SearchByLabel.Rd |only wikiTools-1.2.4/wikiTools/man/w_Wikipedias.Rd |only wikiTools-1.2.4/wikiTools/man/w_isInstanceOf.Rd |only wikiTools-1.2.4/wikiTools/man/w_isValid.Rd |only wikiTools-1.2.4/wikiTools/man/w_query.Rd |only wikiTools-1.2.4/wikiTools/vignettes |only 53 files changed, 2558 insertions(+), 700 deletions(-)
Title: Causal Effects in Principal Strata Defined by Antidrug
Antibodies
Description: Bayesian models to estimate causal effects of biological
treatments on time-to-event endpoints in clinical trials with principal
strata defined by the occurrence of antidrug antibodies.
The methodology is based on Frangakis and Rubin (2002)
<doi:10.1111/j.0006-341x.2002.00021.x> and Imbens and Rubin (1997)
<doi:10.1214/aos/1034276631>, and here adapted to a specific
time-to-event setting.
Author: Christian Stock [aut, cre] ,
Emma Torrini [aut],
Boehringer Ingelheim Pharma GmbH & Co. KG [cph, fnd]
Maintainer: Christian Stock <christian.stock@boehringer-ingelheim.com>
Diff between BPrinStratTTE versions 0.0.2 dated 2023-12-20 and 0.0.7 dated 2024-04-13
DESCRIPTION | 20 MD5 | 61 - NAMESPACE | 2 NEWS.md |only R/BPrinStratTTE-package.R | 15 R/fit_mult_exp_covar.R | 3 R/fit_mult_exp_nocovar.R | 1 R/ocs_exp_covar.R | 3 R/ocs_exp_nocovar.R | 1 R/run_sim_exp_covar.R | 3 R/run_sim_exp_nocovar.R | 1 R/sim_dat_mult_trials_exp_covar.R | 12 R/sim_dat_mult_trials_exp_nocovar.R | 8 R/sim_dat_one_trial_exp_covar.R | 27 R/sim_dat_one_trial_exp_nocovar.R | 37 README.md | 12 inst/WORDLIST | 1 inst/stan/m_exp_covar.stan | 26 inst/stan/m_exp_nocovar.stan | 26 man/BPrinStratTTE-package.Rd | 1 man/fit_mult_exp_covar.Rd | 3 man/fit_mult_exp_nocovar.Rd | 1 man/ocs_exp_covar.Rd | 3 man/ocs_exp_nocovar.Rd | 1 man/run_sim_exp_covar.Rd | 3 man/run_sim_exp_nocovar.Rd | 1 man/sim_dat_mult_trials_exp_covar.Rd | 5 man/sim_dat_mult_trials_exp_nocovar.Rd | 3 man/sim_dat_one_trial_exp_covar.Rd | 11 man/sim_dat_one_trial_exp_nocovar.Rd | 7 src/stanExports_m_exp_covar.h | 1656 +++++++++++++++------------------ src/stanExports_m_exp_nocovar.h | 1451 +++++++++++++--------------- 32 files changed, 1615 insertions(+), 1790 deletions(-)
Title: Kinship Ties in (Virtual) Multi-Generation Populations
Description: Tools to study lineages, grandparenthood, loss of close relatives, kinship networks and other topics in multi-generation populations.
Author: Frans Willekens [aut, cre]
Maintainer: Frans Willekens <willekens@nidi.nl>
Diff between Families versions 2.0.1 dated 2024-03-28 and 2.0.2 dated 2024-04-13
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 11 +++++++++++ R/Alive.R | 1 + R/IDch.R | 8 ++++++-- R/Tests.R | 9 +++------ 6 files changed, 30 insertions(+), 17 deletions(-)
Title: Bayesian Quantile Regression for Ordinal Models
Description: Package provides functions for estimation and inference in Bayesian quantile regression with ordinal outcomes. An ordinal model with 3 or more outcomes (labeled OR1 model) is estimated by a combination of Gibbs sampling and Metropolis-Hastings (MH) algorithm. Whereas an ordinal model with exactly 3 outcomes (labeled OR2 model) is estimated using a Gibbs sampling algorithm. The summary output presents the posterior mean, posterior standard deviation, 95% credible intervals, and the inefficiency factors along with the two model comparison measures – logarithm of marginal likelihood and the deviance information criterion (DIC). The package also provides functions for computing the covariate effects and other functions that aids either the estimation or inference in quantile ordinal models.
Rahman, M. A. (2016).“Bayesian Quantile Regression for Ordinal Models.” Bayesian Analysis, 11(1): 1-24 <doi: 10.1214/15-BA939>.
Yu, K., and Moyeed, R. A. (2001). “Bayesian Quantile Regression.” St [...truncated...]
Author: Mohammad Arshad Rahman Developer [aut],
Prajual Maheshwari [cre]
Maintainer: Prajual Maheshwari <prajual1391@gmail.com>
Diff between bqror versions 1.6.1 dated 2023-05-06 and 1.7.0 dated 2024-04-13
DESCRIPTION | 12 +-- MD5 | 84 ++++++++++++------------- R/ORI.R | 139 +++++++++++++++++++----------------------- R/ORII.R | 128 ++++++++++++++++++-------------------- R/bqror.R | 18 ++--- R/data.R | 81 ++++++++---------------- man/Educational_Attainment.Rd | 22 ++---- man/Policy_Opinion.Rd | 15 ---- man/alcdf.Rd | 9 +- man/alcdfstd.Rd | 7 -- man/bqror.Rd | 15 ++-- man/covEffectOR1.Rd | 18 ++--- man/covEffectOR2.Rd | 18 ++--- man/data25j3.Rd | 8 -- man/data25j4.Rd | 8 -- man/data50j3.Rd | 8 -- man/data50j4.Rd | 8 -- man/data75j3.Rd | 8 -- man/data75j4.Rd | 8 -- man/dicOR1.Rd | 6 - man/dicOR2.Rd | 6 - man/drawbetaOR1.Rd | 5 - man/drawbetaOR2.Rd | 5 - man/drawdeltaOR1.Rd | 13 +-- man/drawlatentOR1.Rd | 9 +- man/drawlatentOR2.Rd | 9 +- man/drawnuOR2.Rd | 7 -- man/drawsigmaOR2.Rd | 9 -- man/drawwOR1.Rd | 7 -- man/ineffactorOR1.Rd | 14 ++-- man/ineffactorOR2.Rd | 14 ++-- man/logMargLikeOR1.Rd | 10 +-- man/logMargLikeOR2.Rd | 6 - man/qrminfundtheorem.Rd | 2 man/qrnegLogLikeOR2.Rd | 3 man/qrnegLogLikensumOR1.Rd | 5 - man/quantregOR1.Rd | 11 +-- man/quantregOR2.Rd | 11 +-- man/rndald.Rd | 10 +-- man/summary.bqrorOR1.Rd | 2 man/summary.bqrorOR2.Rd | 2 tests/testthat/test-ODRI.R | 4 - tests/testthat/test-ODRII.R | 6 - 43 files changed, 347 insertions(+), 443 deletions(-)
Title: Credit Risk Scorecard
Description: The `scorecard` package makes the development of credit risk scorecard
easier and efficient by providing functions for some common tasks,
such as data partition, variable selection, woe binning, scorecard scaling,
performance evaluation and report generation. These functions can also used
in the development of machine learning models.
The references including:
1. Refaat, M. (2011, ISBN: 9781447511199). Credit Risk Scorecard:
Development and Implementation Using SAS.
2. Siddiqi, N. (2006, ISBN: 9780471754510). Credit risk scorecards.
Developing and Implementing Intelligent Credit Scoring.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>
Diff between scorecard versions 0.4.3 dated 2023-08-08 and 0.4.4 dated 2024-04-13
DESCRIPTION | 8 +- MD5 | 22 ++--- NEWS.md | 8 ++ R/report.R | 2 R/split_df.R | 23 +++--- R/utils.R | 2 R/woebin.R | 203 +++++++++++++++++++++++++++++------------------------ build/vignette.rds |binary inst/doc/demo.R | 2 man/split_df.Rd | 6 - man/woebin.Rd | 13 +-- man/woebin_adj.Rd | 19 +--- 12 files changed, 169 insertions(+), 139 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-15 3.6.0
2023-11-25 3.5.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-01 1.0.1
2024-03-11 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-11 2.0.9
Title: qPCR Data Analysis
Description: Various methods are employed for statistical analysis and graphical presentation of real-time PCR (quantitative PCR or qPCR) data. 'rtpcr' handles amplification efficiency calculation, statistical analysis and graphical representation of real-time PCR data based on up to two reference genes. By accounting for amplification efficiency values, 'rtpcr' was developed using a general calculation method described by Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5>, covering both the Livak and Pfaffl methods. Based on the experimental conditions, the functions of the 'rtpcr' package use t-test (for experiments with a two-level factor) or analysis of variance (for cases where more than two levels or factors exist) to calculate the fold change or relative expression. The functions also provide standard deviations and confidence limits for means and apply statistical mean comparisons. To facilitate using 'rtpcr', different datasets have been employed in the examples and the outputs ar [...truncated...]
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <gh.mirzaghaderi@uok.ac.ir>
Diff between rtpcr versions 1.0.2 dated 2024-04-10 and 1.0.3 dated 2024-04-13
rtpcr-1.0.2/rtpcr/data/data_3factor_a.rda |only rtpcr-1.0.2/rtpcr/data/data_3factor_b.rda |only rtpcr-1.0.2/rtpcr/inst/extdata/data_3factor_a.csv |only rtpcr-1.0.2/rtpcr/inst/extdata/data_3factor_b.csv |only rtpcr-1.0.2/rtpcr/man/data_3factor_a.Rd |only rtpcr-1.0.2/rtpcr/man/data_3factor_b.Rd |only rtpcr-1.0.3/rtpcr/DESCRIPTION | 6 rtpcr-1.0.3/rtpcr/MD5 | 51 +- rtpcr-1.0.3/rtpcr/R/oneFACTORplot.r | 23 - rtpcr-1.0.3/rtpcr/R/package_data.r | 28 - rtpcr-1.0.3/rtpcr/R/qpcrANCOVA.r | 93 +++- rtpcr-1.0.3/rtpcr/R/qpcrANOVA.r | 2 rtpcr-1.0.3/rtpcr/R/qpcrTTESTplot.r | 12 rtpcr-1.0.3/rtpcr/R/qpcrhlpr.r | 2 rtpcr-1.0.3/rtpcr/R/threeFACTORplot.r | 27 - rtpcr-1.0.3/rtpcr/R/twoFACTORplot.r | 23 - rtpcr-1.0.3/rtpcr/data/data_2factor.rda |binary rtpcr-1.0.3/rtpcr/data/data_3factor.rda |only rtpcr-1.0.3/rtpcr/inst/doc/vignette.R | 40 + rtpcr-1.0.3/rtpcr/inst/doc/vignette.Rmd | 52 +- rtpcr-1.0.3/rtpcr/inst/doc/vignette.html | 501 +++++++++++++--------- rtpcr-1.0.3/rtpcr/inst/extdata/data_2factor.csv | 36 - rtpcr-1.0.3/rtpcr/inst/extdata/data_3factor.csv |only rtpcr-1.0.3/rtpcr/man/data_3factor.Rd |only rtpcr-1.0.3/rtpcr/man/oneFACTORplot.Rd | 2 rtpcr-1.0.3/rtpcr/man/qpcrANCOVA.Rd | 30 + rtpcr-1.0.3/rtpcr/man/qpcrANOVA.Rd | 2 rtpcr-1.0.3/rtpcr/man/qpcrTTESTplot.Rd | 2 rtpcr-1.0.3/rtpcr/man/threeFACTORplot.Rd | 6 rtpcr-1.0.3/rtpcr/man/twoFACTORplot.Rd | 2 rtpcr-1.0.3/rtpcr/vignettes/vignette.Rmd | 52 +- 31 files changed, 630 insertions(+), 362 deletions(-)
Title: Kernel-Embedding-of-Probability Test for Elliptical Distribution
Description: Provides an implementation of a kernel-embedding of probability test for elliptical distribution. This is an asymptotic test for elliptical distribution under general alternatives, and the location and shape parameters are assumed to be unknown. Some side-products are posted, including the transformation between rectangular and polar coordinates and two product-type kernel functions. See Tang and Li (2024) <doi:10.48550/arXiv.2306.10594> for details.
Author: Yin Tang [aut, cre],
Bing Li [cph, aut]
Maintainer: Yin Tang <yqt5219@psu.edu>
Diff between KEPTED versions 0.1.1 dated 2024-04-11 and 0.2.0 dated 2024-04-13
DESCRIPTION | 8 - MD5 | 9 - NEWS.md | 2 build/partial.rdb |only inst/doc/KEPTED.html | 392 +++++++++++++++++++++++++------------------------- man/KEPTED-package.Rd | 2 6 files changed, 209 insertions(+), 204 deletions(-)