Title: Generating Various Numerical Representation Schemes for Protein
Sequences
Description: Comprehensive toolkit for generating various numerical
features of protein sequences described in Xiao et al. (2015)
<DOI:10.1093/bioinformatics/btv042>. For full functionality,
the software 'ncbi-blast+' is needed, see
<https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html>
for more information.
Author: Nan Xiao [aut, cre] ,
Qing-Song Xu [aut],
Dong-Sheng Cao [aut],
Sebastian Mueller [ctb]
Maintainer: Nan Xiao <me@nanx.me>
Diff between protr versions 1.7-0 dated 2023-10-30 and 1.7-1 dated 2024-04-19
protr-1.7-0/protr/man/acc.Rd |only protr-1.7-1/protr/DESCRIPTION | 8 protr-1.7-1/protr/LICENSE | 2 protr-1.7-1/protr/MD5 | 37 - protr-1.7-1/protr/NAMESPACE | 1 protr-1.7-1/protr/NEWS.md | 84 ++-- protr-1.7-1/protr/R/misc-06-acc.R | 1 protr-1.7-1/protr/R/par-01-parSeqSim.R | 268 ++++++++++--- protr-1.7-1/protr/README.md | 2 protr-1.7-1/protr/build/partial.rdb |binary protr-1.7-1/protr/build/vignette.rds |binary protr-1.7-1/protr/inst/doc/protr.Rmd | 5 protr-1.7-1/protr/inst/doc/protr.html | 53 +- protr-1.7-1/protr/man/ACC.Rd |only protr-1.7-1/protr/man/crossSetSim.Rd | 21 - protr-1.7-1/protr/man/crossSetSimDisk.Rd |only protr-1.7-1/protr/man/figures/logo.png |binary protr-1.7-1/protr/man/parSeqSim.Rd | 17 protr-1.7-1/protr/man/parSeqSimDisk.Rd | 19 protr-1.7-1/protr/vignettes/protr.Rmd | 5 protr-1.7-1/protr/vignettes/protr.bib | 607 +++++++++++++++---------------- 21 files changed, 653 insertions(+), 477 deletions(-)
Title: Tour Methods for Multivariate Data Visualisation
Description: Implements geodesic interpolation and basis
generation functions that allow you to create new tour
methods from R.
Author: Hadley Wickham [aut, ctb] ,
Dianne Cook [aut, cre] ,
Nick Spyrison [ctb] ,
Ursula Laa [ctb] ,
H. Sherry Zhang [ctb] ,
Stuart Lee [ctb]
Maintainer: Dianne Cook <dicook@monash.edu>
Diff between tourr versions 1.1.0 dated 2023-08-24 and 1.2.0 dated 2024-04-19
DESCRIPTION | 10 +-- LICENSE | 2 MD5 | 62 +++++++++++++---------- NAMESPACE | 5 + NEWS.md | 12 ++++ R/anomaly-pursuit.r |only R/data.r | 7 +- R/display-faces.r | 12 ++-- R/display-groupxy.r | 6 +- R/display-xy.r | 119 +++++++++++++++++++++++++++++++++++++++++---- R/interesting-indices.r | 4 - R/linear-algebra.r | 22 ++++++++ R/tour-guided-anomaly.r |only R/tour-guided-section.r | 4 - R/tour-radial.r | 8 +-- R/util.r | 15 ++++- build/vignette.rds |binary data/flea.rda |binary data/flea_raw.rda |only inst/df.rda |only inst/doc/edges.R | 2 inst/doc/edges.html | 4 - inst/doc/tourr.R | 2 inst/vc.rda |only man/Flea-measurements.Rd | 8 ++- man/anomaly_index.Rd |only man/display_faces.Rd | 5 - man/display_groupxy.Rd | 4 + man/display_xy.Rd | 18 ++++++ man/draw_tour_axes.Rd | 17 ++++++ man/guided_anomaly_tour.Rd |only man/guided_section_tour.Rd | 4 - man/mahal_dist.Rd |only man/mapShapes.Rd | 4 + man/norm_bin.Rd | 4 - man/radial_tour.Rd | 8 +-- 36 files changed, 286 insertions(+), 82 deletions(-)
Title: Affinity Propagation Clustering
Description: Implements Affinity Propagation clustering introduced by Frey and
Dueck (2007) <DOI:10.1126/science.1136800>. The algorithms are largely
analogous to the 'Matlab' code published by Frey and Dueck.
The package further provides leveraged affinity propagation and an
algorithm for exemplar-based agglomerative clustering that can also be
used to join clusters obtained from affinity propagation. Various
plotting functions are available for analyzing clustering results.
Author: Ulrich Bodenhofer [aut, cre],
Johannes Palme [ctb],
Chrats Melkonian [ctb],
Andreas Kothmeier [aut],
Nikola Kostic [ctb]
Maintainer: Ulrich Bodenhofer <ulrich@bodenhofer.com>
Diff between apcluster versions 1.4.11 dated 2023-09-19 and 1.4.12 dated 2024-04-19
apcluster-1.4.11/apcluster/README.md |only apcluster-1.4.11/apcluster/TODO |only apcluster-1.4.11/apcluster/vignettes/JKU_EN_noName.pdf |only apcluster-1.4.11/apcluster/vignettes/bioinf-article.txi |only apcluster-1.4.11/apcluster/vignettes/bioinf-bar.png |only apcluster-1.4.11/apcluster/vignettes/bioinf.cls |only apcluster-1.4.12/apcluster/DESCRIPTION | 13 ++++----- apcluster-1.4.12/apcluster/MD5 | 21 ++++++---------- apcluster-1.4.12/apcluster/build/partial.rdb |binary apcluster-1.4.12/apcluster/build/vignette.rds |binary apcluster-1.4.12/apcluster/inst/NEWS | 4 +++ apcluster-1.4.12/apcluster/inst/doc/apcluster.Rnw | 14 ++++++---- apcluster-1.4.12/apcluster/inst/doc/apcluster.pdf |binary apcluster-1.4.12/apcluster/vignettes/apcluster.Rnw | 14 ++++++---- apcluster-1.4.12/apcluster/vignettes/ubmanual.cls |only 15 files changed, 34 insertions(+), 32 deletions(-)
Title: Nested Cross Validation for the Relaxed Lasso and Other Machine
Learning Models
Description: Cross validation informed Relaxed LASSO, Artificial Neural Network (ANN), gradient boosting machine ('xgboost'), Random Forest ('RandomForestSRC'), Recursive Partitioning ('RPART') or step wise regression models are fit. Nested cross validation (or analogous for the random forest) is used to estimate and compare performances between these models with results presented in tabular or graphical means. Calibration plots can also be generated, again based upon (nested) cross validation.
For some datasets, for example when the design matrix is not of full rank, 'glmnet' may have very long run times when fitting the relaxed lasso model, from our experience when fitting Cox models on data with many predictors and many patients, making it difficult to get solutions from either glmnet() or cv.glmnet(). This may be remedied with the 'path=TRUE' options when calling glmnet() and cv.glmnet(). Within the glmnetr package the approach of path=TRUE is taken by default.
When fitting not a relaxed la [...truncated...]
Author: Walter K Kremers [aut, cre] ,
Nicholas B Larson [ctb]
Maintainer: Walter K Kremers <kremers.walter@mayo.edu>
Diff between glmnetr versions 0.4-4 dated 2024-03-23 and 0.4-5 dated 2024-04-19
glmnetr-0.4-4/glmnetr/R/cv.glmnetr_240322.R |only glmnetr-0.4-4/glmnetr/R/nested.glmnetr_240322.R |only glmnetr-0.4-4/glmnetr/R/plot.cv.glmnetr_240322.R |only glmnetr-0.4-4/glmnetr/R/summary.nested.glmnetr_240322.R |only glmnetr-0.4-4/glmnetr/inst/doc/An_Overview_of_glmnetr_240322.pdf |only glmnetr-0.4-4/glmnetr/inst/doc/An_Overview_of_glmnetr_240322.pdf.asis |only glmnetr-0.4-4/glmnetr/inst/doc/Using_ann_tab_cv_240322.pdf |only glmnetr-0.4-4/glmnetr/inst/doc/Using_ann_tab_cv_240322.pdf.asis |only glmnetr-0.4-4/glmnetr/inst/doc/Using_stepreg_240322.pdf |only glmnetr-0.4-4/glmnetr/inst/doc/Using_stepreg_240322.pdf.asis |only glmnetr-0.4-4/glmnetr/vignettes/An_Overview_of_glmnetr_240322.Rmd |only glmnetr-0.4-4/glmnetr/vignettes/An_Overview_of_glmnetr_240322.pdf.asis |only glmnetr-0.4-4/glmnetr/vignettes/Using_ann_tab_cv_240322.Rmd |only glmnetr-0.4-4/glmnetr/vignettes/Using_ann_tab_cv_240322.pdf.asis |only glmnetr-0.4-4/glmnetr/vignettes/Using_stepreg_240322.Rmd |only glmnetr-0.4-4/glmnetr/vignettes/Using_stepreg_240322.pdf.asis |only glmnetr-0.4-5/glmnetr/DESCRIPTION | 12 - glmnetr-0.4-5/glmnetr/MD5 | 84 +++++----- glmnetr-0.4-5/glmnetr/NAMESPACE | 7 glmnetr-0.4-5/glmnetr/R/ann_tab_cv_240322.R | 3 glmnetr-0.4-5/glmnetr/R/calplot_240409.R |only glmnetr-0.4-5/glmnetr/R/cv.glmnetr_240412.R |only glmnetr-0.4-5/glmnetr/R/glmnetr_CIs_240410.R |only glmnetr-0.4-5/glmnetr/R/nested.glmnetr_240418.R |only glmnetr-0.4-5/glmnetr/R/plot.cv.glmnetr_240410.R |only glmnetr-0.4-5/glmnetr/R/summary.nested.glmnetr_240410.R |only glmnetr-0.4-5/glmnetr/build/vignette.rds |binary glmnetr-0.4-5/glmnetr/inst/doc/An_Overview_of_glmnetr_240420.pdf |only glmnetr-0.4-5/glmnetr/inst/doc/An_Overview_of_glmnetr_240420.pdf.asis |only glmnetr-0.4-5/glmnetr/inst/doc/Calibration_240420.pdf |only glmnetr-0.4-5/glmnetr/inst/doc/Calibration_240420.pdf.asis |only glmnetr-0.4-5/glmnetr/inst/doc/Ridge_and_Lasso_240322.pdf |only glmnetr-0.4-5/glmnetr/inst/doc/Ridge_and_Lasso_240322.pdf.asis |only glmnetr-0.4-5/glmnetr/inst/doc/Using_ann_tab_cv_240420.pdf |only glmnetr-0.4-5/glmnetr/inst/doc/Using_ann_tab_cv_240420.pdf.asis |only glmnetr-0.4-5/glmnetr/inst/doc/Using_stepreg_240420.pdf |only glmnetr-0.4-5/glmnetr/inst/doc/Using_stepreg_240420.pdf.asis |only glmnetr-0.4-5/glmnetr/man/calplot.Rd |only glmnetr-0.4-5/glmnetr/man/calplot0.Rd |only glmnetr-0.4-5/glmnetr/man/cv.glmnetr.Rd | 2 glmnetr-0.4-5/glmnetr/man/glmnetr.Rd | 2 glmnetr-0.4-5/glmnetr/man/glmnetr.cis.Rd |only glmnetr-0.4-5/glmnetr/man/glmnetr.cis0.Rd |only glmnetr-0.4-5/glmnetr/man/glmnetr.compcv.Rd | 4 glmnetr-0.4-5/glmnetr/man/glmnetr.compcv0.Rd | 2 glmnetr-0.4-5/glmnetr/man/glmnetr_devratio.Rd | 2 glmnetr-0.4-5/glmnetr/man/glmnetrll_1fold.Rd | 2 glmnetr-0.4-5/glmnetr/man/myaxis.Rd |only glmnetr-0.4-5/glmnetr/man/myrug.Rd |only glmnetr-0.4-5/glmnetr/man/nested.glmnetr.Rd | 4 glmnetr-0.4-5/glmnetr/man/plot.cv.glmnetr.Rd | 2 glmnetr-0.4-5/glmnetr/man/plot.glmnetr.Rd | 2 glmnetr-0.4-5/glmnetr/man/plot.nested.glmnetr.Rd | 4 glmnetr-0.4-5/glmnetr/man/predict.nested.glmnetr.Rd | 2 glmnetr-0.4-5/glmnetr/man/print.nested.glmnetr.Rd | 8 glmnetr-0.4-5/glmnetr/man/roundperf.Rd | 2 glmnetr-0.4-5/glmnetr/man/summary.nested.glmnetr.Rd | 5 glmnetr-0.4-5/glmnetr/vignettes/An_Overview_of_glmnetr_240420.Rmd |only glmnetr-0.4-5/glmnetr/vignettes/An_Overview_of_glmnetr_240420.pdf.asis |only glmnetr-0.4-5/glmnetr/vignettes/Calibration_240420.Rmd |only glmnetr-0.4-5/glmnetr/vignettes/Calibration_240420.pdf.asis |only glmnetr-0.4-5/glmnetr/vignettes/Ridge_and_Lasso_240322.Rmd |only glmnetr-0.4-5/glmnetr/vignettes/Ridge_and_Lasso_240322.pdf.asis |only glmnetr-0.4-5/glmnetr/vignettes/Using_ann_tab_cv_240420.Rmd |only glmnetr-0.4-5/glmnetr/vignettes/Using_ann_tab_cv_240420.pdf.asis |only glmnetr-0.4-5/glmnetr/vignettes/Using_stepreg_240420.Rmd |only glmnetr-0.4-5/glmnetr/vignettes/Using_stepreg_240420.pdf.asis |only 67 files changed, 87 insertions(+), 62 deletions(-)
Title: Functions for Estimating Centrographic Statistics
Description: A collection of functions for computing centrographic
statistics (e.g., standard distance, standard deviation
ellipse, standard deviation box) for observations taken at
point locations. Separate plotting functions have been
developed for each measure. Users interested in writing results
to ESRI shapefiles can do so by using results from 'aspace'
functions as inputs to the convert.to.shapefile() and
write.shapefile() functions in the 'shapefiles' library. We intend to
provide 'terra' integration for geographic data in a future release.
The 'aspace' package was originally conceived to aid in the analysis of
spatial patterns of travel behaviour (see Buliung and Remmel 2008
<doi:10.1007/s10109-008-0063-7>).
Author: Tarmo K. Remmel [aut, cre] ,
Randy Bui [aut],
Ron N. Buliung [aut]
Maintainer: Tarmo K. Remmel <remmelt@yorku.ca>
Diff between aspace versions 4.1.1 dated 2024-04-17 and 4.1.2 dated 2024-04-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/calc_sde.R | 12 +++++------- R/plot_centres.R | 4 ++-- 5 files changed, 20 insertions(+), 17 deletions(-)
Title: Propensity Score Methods for Assigning Treatment in Randomized
Trials
Description: Contains functions to run propensity-biased allocation to balance covariate distributions in sequential trials and propensity-constrained randomization to balance covariate distributions in trials with known baseline covariates at time of randomization. Currently only supports trials comparing two groups.
Author: Travis Loux
Maintainer: Travis Loux <travis.loux@slu.edu>
Diff between PropScrRand versions 1.1.1 dated 2022-04-23 and 1.1.2 dated 2024-04-19
PropScrRand-1.1.1/PropScrRand/man/PropScrRand-package.Rd |only PropScrRand-1.1.2/PropScrRand/DESCRIPTION | 8 ++++---- PropScrRand-1.1.2/PropScrRand/MD5 | 3 +-- 3 files changed, 5 insertions(+), 6 deletions(-)
Title: HMMs with Ordered Hidden States and Emission Densities
Description: Inference using a class of Hidden Markov models
(HMMs) called 'oHMMed'(ordered HMM with emission densities
<doi:10.1186/s12859-024-05751-4>): The 'oHMMed' algorithms identify
the number of comparably homogeneous regions within observed sequences
with autocorrelation patterns. These are modelled as discrete hidden
states; the observed data points are then realisations of continuous
probability distributions with state-specific means that enable
ordering of these distributions. The observed sequence is labelled
according to the hidden states, permitting only neighbouring states
that are also neighbours within the ordering of their associated
distributions. The parameters that characterise these state-specific
distributions are then inferred. Relevant for application to genomic
sequences, time series, or any other sequence data with serial
autocorrelation.
Author: Michal Majka [aut, cre] ,
Lynette Caitlin Mikula [aut] ,
Claus Vogl [aut]
Maintainer: Michal Majka <michalmajka@hotmail.com>
Diff between oHMMed versions 1.0.1 dated 2023-11-19 and 1.0.2 dated 2024-04-19
DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- R/MCMC_normal.R | 10 +++++----- R/MCMC_poisson.R | 10 +++++----- R/additional_documentation.R | 6 +++--- R/zzz.R |only man/hmm_mcmc_gamma_poisson.Rd | 8 ++++---- man/hmm_mcmc_normal.Rd | 8 ++++---- man/oHMMed-package.Rd | 8 ++++---- man/posterior_prob_gamma_poisson.Rd | 2 +- man/posterior_prob_normal.Rd | 2 +- 11 files changed, 41 insertions(+), 40 deletions(-)
Title: The R WINS Package
Description: Calculate the win statistics (win ratio, net benefit and win odds) for prioritized multiple endpoints, plot the win statistics and win proportions over study time if at least one time-to-event endpoint is analyzed, and simulate datasets with dependent endpoints. The package can handle any type of outcomes (continuous, ordinal, binary, time-to-event) and allow users to perform stratified analysis, inverse probability of censoring weighting (IPCW) and inverse probability of treatment weighting (IPTW) analysis.
Author: Ying Cui [aut, cre],
Bo Huang [aut]
Maintainer: Ying Cui <cuiyingbeicheng@gmail.com>
Diff between WINS versions 1.4 dated 2024-04-07 and 1.4.1 dated 2024-04-19
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/win.stat.R | 8 ++++---- inst/doc/vignette.pdf |binary 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Training Run Tools for 'TensorFlow'
Description: Create and manage unique directories for each 'TensorFlow'
training run. Provides a unique, time stamped directory for each run
along with functions to retrieve the directory of the latest run or
latest several runs.
Author: Tomasz Kalinowski [ctb, cre],
Daniel Falbel [ctb],
JJ Allaire [aut],
RStudio [cph, fnd],
Mike Bostock [cph] ,
Masayuki Tanaka [cph] ,
jQuery Foundation [cph] ,
jQuery contributors [cph] ,
Shaun Bowe [cph] ,
Materialize [cph] ,
Yuxi You [cph] ,
Kevin [...truncated...]
Maintainer: Tomasz Kalinowski <tomasz@rstudio.com>
Diff between tfruns versions 1.5.2 dated 2024-01-26 and 1.5.3 dated 2024-04-19
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/training_run.R | 4 ++-- build/vignette.rds |binary 5 files changed, 13 insertions(+), 9 deletions(-)
Title: Interface to 'REDCap'
Description: Access data stored in 'REDCap' databases using the Application
Programming Interface (API). 'REDCap' (Research Electronic Data CAPture;
<https://projectredcap.org>, Harris, et al. (2009) <doi:10.1016/j.jbi.2008.08.010>,
Harris, et al. (2019) <doi:10.1016/j.jbi.2019.103208>) is
a web application for building and managing online surveys and databases
developed at Vanderbilt University. The API allows users to access data
and project meta data (such as the data dictionary) from the web
programmatically. The 'redcapAPI' package facilitates the process of
accessing data with options to prepare an analysis-ready data set
consistent with the definitions in a database's data dictionary.
Author: Benjamin Nutter [ctb, aut],
Shawn Garbett [cre, ctb] ,
Savannah Obregon [ctb],
Thomas Obadia [ctb],
Marcus Lehr [ctb],
Brian High [ctb],
Stephen Lane [ctb],
Will Beasley [ctb],
Will Gray [ctb],
Nick Kennedy [ctb],
Tan Hsi-Nien [ctb],
Jeffrey Horner [ [...truncated...]
Maintainer: Shawn Garbett <shawn.garbett@vumc.org>
Diff between redcapAPI versions 2.8.4 dated 2024-01-31 and 2.9.0 dated 2024-04-19
DESCRIPTION | 8 MD5 | 232 +++++----- NAMESPACE | 1 NEWS | 13 R/constants.R | 12 R/createFileRepositoryFolder.R | 16 R/deleteArms.R | 20 R/deleteDags.R | 15 R/deleteEvents.R | 18 R/deleteFileRepository.R | 12 R/deleteFromFileRepository.R | 11 R/deleteUserRoles.R | 12 R/deleteUsers.R | 12 R/docsArmsMethods.R | 5 R/docsDagMethods.R | 3 R/docsEventMethods.R | 3 R/docsFileMethods.R | 3 R/docsFileRepositoryMethods.R | 3 R/docsFromFileRepository.R | 5 R/docsMappingMethods.R | 3 R/docsMetaDataMethods.R | 5 R/docsProjectInformationMethods.R | 5 R/docsRepeatingInstrumentEventMethods.R | 6 R/docsUserMethods.R | 5 R/docsUserRoleAssignmentMethods.R | 5 R/docsUserRoleMethods.R | 3 R/exportFiles.R | 8 R/exportRecordsTyped.R | 9 R/exportReportsTyped.R | 3 R/fieldCastingFunctions.R | 25 + R/fieldValidationAndCasting.R | 2 R/filterEmptyRow.R | 54 +- R/importArms.R | 22 R/importDags.R | 15 R/importEvents.R | 19 R/importFileRepository.R | 17 R/importFileToRecord.R |only R/importMappings.R | 17 R/importMetaData.R | 24 - R/importProjectInformation.R | 21 R/importRecords.R | 30 - R/importRepeatingInstrumentsEvents.R | 15 R/importToFileRepository.R | 11 R/importUserRoleAssignments.R | 15 R/importUserRoles.R | 21 R/importUsers.R | 12 R/makeApiCall.R | 27 - R/missingSummary.R | 74 --- R/reviewInvalidRecords.R | 2 R/switchDag.R | 18 R/unlockREDCap.R | 55 ++ README.md | 6 build/vignette.rds |binary inst/doc/redcapAPI-best-practices.pdf |binary inst/doc/redcapAPI-casting-data.pdf |binary inst/doc/redcapAPI-data-validation.pdf |binary inst/doc/redcapAPI-faq.pdf |binary inst/doc/redcapAPI-getting-started-connecting.pdf |binary inst/doc/redcapAPI-missing-data-detection.pdf |binary inst/doc/redcapAPI-offline-connection.pdf |binary inst/vignette-source/UsingOfflineConnections.Rmd | 2 man/armsMethods.Rd | 5 man/createFileRepositoryFolder.Rd | 4 man/dagMethods.Rd | 5 man/eventsMethods.Rd | 5 man/fileMethods.Rd | 15 man/fileRepositoryMethods.Rd | 5 man/fromFileRepositoryMethods.Rd | 5 man/importFileToRecord.Rd |only man/mappingMethods.Rd | 6 man/metaDataMethods.Rd | 4 man/missingSummary.Rd | 50 -- man/projectInformationMethods.Rd | 4 man/redcapAPI.Rd | 2 man/repeatingInstrumentMethods.Rd | 5 man/reviewInvalidRecords.Rd | 2 man/switchDag.Rd | 4 man/unlockREDCap.Rd | 4 man/userMethods.Rd | 5 man/userRoleAssignmentMethods.Rd | 4 man/userRoleMethods.Rd | 5 tests/testthat/helper-00-REDCapQACredentials.R | 38 + tests/testthat/helper-01-QASystemValues.R | 2 tests/testthat/test-002-projectSetup.R | 12 tests/testthat/test-024-unlockREDCap.R | 97 +++- tests/testthat/test-050-makeApiCall.R | 80 +++ tests/testthat/test-061-regularExpressions.R |only tests/testthat/test-100-projectInfo-ArgumentValidation.R | 17 tests/testthat/test-101-userMethods-ArgumentValidation.R | 28 - tests/testthat/test-101-userMethods-Functionality.R | 13 tests/testthat/test-102-userRoleMethods-ArgumentValidation.R | 14 tests/testthat/test-102-userRoleMethods-Functionality.R | 4 tests/testthat/test-103-userRoleAssignmentMethods-ArgumentValidation.R | 1 tests/testthat/test-103-userRoleAssignmentMethods-Functionality.R | 1 tests/testthat/test-106-armsMethods-ArgumentValidation.R | 33 - tests/testthat/test-106-armsMethods-Functionality.R | 45 - tests/testthat/test-107-eventsMethods-ArgumentValidation.R | 32 - tests/testthat/test-107-eventsMethods-Functionality.R | 23 tests/testthat/test-108-metadataMethods-ArgumentValidation.R | 17 tests/testthat/test-108-metadataMethods-Functionality.R | 28 - tests/testthat/test-109-instrumentMethods-ArgumentValidation.R | 18 tests/testthat/test-109-instrumentMethods-Functionality.R | 44 - tests/testthat/test-110-repeatingInstruments-ArgumentValidation.R | 16 tests/testthat/test-110-repeatingInstruments-Functionality.R | 10 tests/testthat/test-111-switchDag-ArgumentValidation.R | 15 tests/testthat/test-150-importDeleteRecords-ArgumentValidation.R | 11 tests/testthat/test-150-importDeleteRecords-Functionality.R | 55 +- tests/testthat/test-200-exportTypedRecords-Functionality.R | 33 - tests/testthat/test-201-exportTypedRecords-withDAGs.R | 5 tests/testthat/test-202-exportTypedRecords-withEvents.R | 25 + tests/testthat/test-204-exportTypedRecords-withRepeatingInstruments.R | 6 tests/testthat/test-251-castForImport.R | 15 tests/testthat/test-301-fileMethods-Functionality.R | 1 tests/testthat/test-302-createFileRepository-ArgumentValidation.R | 16 tests/testthat/test-303-fileRepository-SingleFileMethods-ArgumentValidation.R | 32 - tests/testthat/test-304-fileRepository-BulkFileMethods-ArgumentValidation.R | 30 - tests/testthat/test-308-importFileToRecord.R |only tests/testthat/test-354-getProjectIdFields.R | 4 tests/testthat/test-356-missingSummary.R | 76 --- 119 files changed, 765 insertions(+), 1231 deletions(-)
Title: Interpretable Neural Network Based on Generalized Additive
Models
Description: Neural network framework based on Generalized Additive Models from Hastie & Tibshirani (1990, ISBN:9780412343902), which trains a different neural network to estimate the contribution of each feature to the response variable. The networks are trained independently leveraging the local scoring and backfitting algorithms to ensure that the Generalized Additive Model converges and it is additive. The resultant Neural Network is a highly accurate and interpretable deep learning model, which can be used for high-risk AI practices where decision-making should be based on accountable and interpretable algorithms.
Author: Ines Ortega-Fernandez [aut, cre, cph]
,
Marta Sestelo [aut, cph]
Maintainer: Ines Ortega-Fernandez <iortega@gradiant.org>
Diff between neuralGAM versions 1.1.0 dated 2023-09-20 and 1.1.1 dated 2024-04-19
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 1 + NEWS.md | 7 +++++++ R/NeuralGAM.R | 6 ++++-- R/install.R | 11 +++++++---- README.md | 1 + man/install_neuralGAM.Rd | 8 +++----- 8 files changed, 34 insertions(+), 22 deletions(-)
Title: 'parsnip' Engines for Survival Models
Description: Engines for survival models from the 'parsnip' package. These
include parametric models (e.g., Jackson (2016)
<doi:10.18637/jss.v070.i08>), semi-parametric (e.g., Simon et al
(2011) <doi:10.18637/jss.v039.i05>), and tree-based models (e.g.,
Buehlmann and Hothorn (2007) <doi:10.1214/07-STS242>).
Author: Emil Hvitfeldt [aut] ,
Hannah Frick [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between censored versions 0.3.0 dated 2024-01-31 and 0.3.1 dated 2024-04-19
DESCRIPTION | 13 +-- MD5 | 25 +++---- NEWS.md | 5 + R/decision_tree-data.R | 8 -- R/partykit.R | 2 R/proportional_hazards-glmnet.R | 16 +--- R/survival_reg-data.R | 64 +------------------ R/survival_reg-flexsurv.R |only README.md | 4 - man/survival_prob_partykit.Rd | 2 tests/testthat/_snaps/proportional_hazards-glmnet.md | 1 tests/testthat/test-proportional_hazards.R | 7 ++ tests/testthat/test-survival_reg-flexsurvspline.R | 30 +++++--- tests/testthat/test-survival_reg.R | 7 ++ 14 files changed, 68 insertions(+), 116 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-05 1.0.2
Title: T Loux Doing R: Functions to Simplify Data Analysis and
Reporting
Description: Gives a number of functions to aid common data
analysis processes and reporting statistical results in an 'RMarkdown' file.
Data analysis functions combine multiple base R functions used to describe
simple bivariate relationships into a single, easy to use function.
Reporting functions will return character strings to report p-values,
confidence intervals, and hypothesis test and regression results. Strings
will be LaTeX-formatted as necessary and will knit pretty in an 'RMarkdown'
document. The package also provides wrappers function in the 'tableone'
package to make the results knit-able.
Author: Travis Loux [aut, cre]
Maintainer: Travis Loux <travis.loux@slu.edu>
Diff between tldr versions 0.3.0 dated 2023-05-24 and 0.4.0 dated 2024-04-19
DESCRIPTION | 15 +++++++-------- MD5 | 6 +++--- NAMESPACE | 2 ++ R/KreateTableOne.R | 2 ++ 4 files changed, 14 insertions(+), 11 deletions(-)
Title: Analysis of Check-All-that-Apply (CATA) Data
Description: Functions for analyzing check-all-that-apply (CATA) data from consumer and sensory tests. Cochran's Q test, McNemar's test, and Penalty-Lift analysis provided, as described in for CATA data analysis by Meyners, Castura & Carr (2013) <doi:10.1016/j.foodqual.2013.06.010>. Cluster analysis can be performed using b-cluster analysis. The quality of cluster analysis solutions can be evaluated using various measures. The methods related to b-cluster analysis are described in a manuscript by Castura, Meyners, Varela & Næs (2022) <doi:10.1016/j.foodqual.2022.104564>. Methods are adapted to product-related hedonic responses by Castura, Meyners, Pohjanheimo, Varela & Næs (2023) <doi:10.1111/joss.12860>.
Author: J.C. Castura [aut, cre, ctb]
Maintainer: J.C. Castura <jcastura@compusense.com>
Diff between cata versions 0.1.0.5 dated 2024-03-04 and 0.1.0.6 dated 2024-04-19
DESCRIPTION | 9 +++++---- MD5 | 12 ++++++------ R/cata-internal.R | 2 +- R/cata.R | 30 +++++++++++++++++++----------- build/partial.rdb |binary man/bcluster.Rd | 1 + man/inspect.Rd | 14 ++++++++------ 7 files changed, 40 insertions(+), 28 deletions(-)
Title: Download Data from Bundesbank
Description: Download data from the time-series
databases of the Bundesbank, the German central
bank. See the overview at the Bundesbank website
(<https://www.bundesbank.de/en/statistics/time-series-databases>)
for available series. The package provides only a
single function, getSeries(), which supports both
traditional and real-time datasets; it will also
download meta data if available. Downloaded data
can automatically be arranged in various formats,
such as data frames or 'zoo' series. The data
may optionally be cached, so as to avoid repeated
downloads of the same series.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between bundesbank versions 0.1-11 dated 2023-10-09 and 0.1-12 dated 2024-04-19
bundesbank-0.1-11/bundesbank/ChangeLog |only bundesbank-0.1-12/bundesbank/DESCRIPTION | 8 +-- bundesbank-0.1-12/bundesbank/MD5 | 9 +-- bundesbank-0.1-12/bundesbank/NEWS | 11 ++++ bundesbank-0.1-12/bundesbank/R/getSeries.R | 65 +++++++++++++++++++------- bundesbank-0.1-12/bundesbank/man/getSeries.Rd | 32 +++++++----- 6 files changed, 87 insertions(+), 38 deletions(-)
Title: A Toolbox for Working with R Arrays in a Functional Programming
Style
Description: A toolbox for R arrays. Flexibly split, bind, reshape, modify,
subset and name arrays.
Author: Tomasz Kalinowski [aut, cre]
Maintainer: Tomasz Kalinowski <kalinowskit@gmail.com>
Diff between listarrays versions 0.3.1 dated 2020-03-08 and 0.4.0 dated 2024-04-19
listarrays-0.3.1/listarrays/man/t.array.Rd |only listarrays-0.4.0/listarrays/DESCRIPTION | 9 - listarrays-0.4.0/listarrays/MD5 | 14 - listarrays-0.4.0/listarrays/NAMESPACE | 1 listarrays-0.4.0/listarrays/NEWS.md |only listarrays-0.4.0/listarrays/R/dim2.R | 24 ++ listarrays-0.4.0/listarrays/R/split.R | 31 --- listarrays-0.4.0/listarrays/README.md | 139 +++++++--------- listarrays-0.4.0/listarrays/tests/testthat/test-split.R | 6 9 files changed, 109 insertions(+), 115 deletions(-)
Title: An Implementation of 'Interactive Brokers' API
Description: Allows interaction with 'Interactive Brokers' 'Trader Workstation'
<https://interactivebrokers.github.io/tws-api/>.
Handles the connection over the network and the exchange of messages.
Data is encoded and decoded between user and wire formats.
Data structures and functionality closely mirror the official implementations.
Author: Luca Billi [aut, cre]
Maintainer: Luca Billi <noreply.section+dev@gmail.com>
Diff between rib versions 0.19.3 dated 2023-10-20 and 0.20.0 dated 2024-04-19
DESCRIPTION | 6 MD5 | 14 - NEWS.md | 4 R/Decoder.R | 36 ++- R/IBClient.R | 406 ++++++++++++++++++++--------------------- R/constants.R | 13 - R/structs.R | 5 inst/data-raw/codes_struct.txt | 4 8 files changed, 258 insertions(+), 230 deletions(-)
Title: Manage R Environments Better
Description: Provides a small set of functions for managing R environments, with defaults designed to encourage usage patterns that scale well to larger code bases. It provides: import_from(), a flexible way to assign bindings that defaults to the current environment; include(), a vectorized alternative to base::source() that also default to the current environment; and attach_eval() and attach_source(), a way to evaluate expressions in attached environments. Together, these (and other) functions pair to provide a robust alternative to base::library() and base::source().
Author: Tomasz Kalinowski [aut, cre]
Maintainer: Tomasz Kalinowski <kalinowskit@gmail.com>
Diff between envir versions 0.2.2 dated 2022-09-22 and 0.3.0 dated 2024-04-19
DESCRIPTION | 8 +-- MD5 | 10 ++-- NEWS.md | 19 ++++++++ R/attach_source.R | 113 ++++++++++++++++++++++++++++++--------------------- README.md | 2 man/attach_source.Rd | 58 ++++++++------------------ 6 files changed, 114 insertions(+), 96 deletions(-)
Title: Call Functions Without Commas Between Arguments
Description: Provides the "comma-free call" operator: '%(%'. Use it to call a
function without commas between the arguments. Just replace the '('
with '%(%' in a function call, supply your arguments as standard R
expressions enclosed by '{ }', and be free of commas (for that call).
Author: Tomasz Kalinowski [aut, cre]
Maintainer: Tomasz Kalinowski <kalinowskit@gmail.com>
Diff between commafree versions 0.1.0 dated 2022-11-11 and 0.2.0 dated 2024-04-19
DESCRIPTION | 6 +++--- MD5 | 5 +++-- NEWS.md |only R/comma-free-call.R | 4 +++- 4 files changed, 9 insertions(+), 6 deletions(-)
Title: Quantum Walk-Based Data Analysis and Prediction
Description: The modeling and prediction of graph-associated time series(GATS) based on continuous time quantum walk. This software is mainly used for feature extraction, modeling, prediction and result evaluation of GATS, including continuous time quantum walk simulation, feature selection, regression analysis, time series prediction, and series fit calculation.
Author: Binghuang Pan [aut, cre],
Zhaoyuan Yu [aut],
Xu Hu [ctb],
Yuhao Teng [ctb]
Maintainer: Binghuang Pan <bright1up@163.com>
Diff between QWDAP versions 1.1.17 dated 2022-04-01 and 1.1.18 dated 2024-04-19
DESCRIPTION | 9 MD5 | 22 R/RcppExports.R | 22 R/pcr.r | 126 ++--- R/plsr.r | 130 ++--- R/ppr.r | 90 +-- R/predict.r | 278 +++++------ R/rrelieff.r | 104 ++-- R/swr.r | 114 ++-- R/sws.r | 1142 +++++++++++++++++++++++----------------------- R/var.r | 600 ++++++++++++------------ src/Rcpp_baseStepwise.cpp | 8 12 files changed, 1322 insertions(+), 1323 deletions(-)
Title: Tagging and Validating Epidemiological Data
Description: Provides tools to help storing and handling case line list data. The 'linelist' class adds a tagging system to classical 'data.frame' objects to identify key epidemiological data such as dates of symptom onset, epidemiological case definition, age, gender or disease outcome. Once tagged, these variables can be seamlessly used in downstream analyses, making data pipelines more robust and reliable.
Author: Hugo Gruson [aut, cre] ,
Thibaut Jombart [aut, ccp],
Tim Taylor [ctb],
Chris Hartgerink [rev]
Maintainer: Hugo Gruson <hugo@data.org>
Diff between linelist versions 1.1.0 dated 2024-02-28 and 1.1.2 dated 2024-04-19
linelist-1.1.0/linelist/tests/testthat/test_set_tags.R |only linelist-1.1.2/linelist/DESCRIPTION | 6 +-- linelist-1.1.2/linelist/MD5 | 23 +++++++------ linelist-1.1.2/linelist/NEWS.md | 13 +++++++ linelist-1.1.2/linelist/build/vignette.rds |binary linelist-1.1.2/linelist/inst/CITATION |only linelist-1.1.2/linelist/inst/WORDLIST | 1 linelist-1.1.2/linelist/inst/doc/compat-dplyr.html | 22 ++++++------ linelist-1.1.2/linelist/inst/doc/linelist.html | 2 - linelist-1.1.2/linelist/inst/doc/software-permissions.R |only linelist-1.1.2/linelist/inst/doc/software-permissions.Rmd |only linelist-1.1.2/linelist/inst/doc/software-permissions.html |only linelist-1.1.2/linelist/man/sub_linelist.Rd | 2 - linelist-1.1.2/linelist/tests/testthat.R | 4 +- linelist-1.1.2/linelist/tests/testthat/test-set_tags.R |only linelist-1.1.2/linelist/vignettes/software-permissions.Rmd |only 16 files changed, 46 insertions(+), 27 deletions(-)
Title: Edit an 'Antares' Simulation
Description: Edit an 'Antares' simulation before running it : create new areas, links, thermal
clusters or binding constraints or edit existing ones. Update 'Antares' general & optimization settings.
'Antares' is an open source power system generator, more information available here : <https://antares-simulator.org/>.
Author: Tatiana Vargas [aut, cre],
Frederic Breant [aut],
Victor Perrier [aut],
Baptiste Seguinot [ctb],
Benoit Thieurmel [ctb],
Titouan Robert [ctb],
Jalal-Edine Zawam [ctb],
Etienne Sanchez [ctb],
Janus De Bondt [ctb],
Assil Mansouri [ctb],
Abdallah Mahoud [...truncated...]
Maintainer: Tatiana Vargas <tatiana.vargas@rte-france.com>
Diff between antaresEditObject versions 0.6.1 dated 2023-12-12 and 0.6.2 dated 2024-04-19
DESCRIPTION | 13 +- MD5 | 92 +++++++------- NAMESPACE | 2 NEWS.md | 30 ++++ R/API.R | 35 ++++- R/createArea.R | 9 - R/createBindingConstraint.R | 27 +++- R/createCluster.R | 85 ++++++------- R/createClusterST.R | 2 R/createDSR.R | 7 - R/createLink.R | 14 +- R/createStudy.R | 71 +++++++--- R/editArea.R | 5 R/editCluster.R | 44 +++--- R/editLink.R | 10 - R/importStudyAPI.R | 62 +++++---- R/playlist.R | 119 +++++++++++++----- R/updateGeneralSettings.R | 10 - R/utils.R | 25 +++ build/vignette.rds |binary inst/doc/Antares_new_features_v860.R | 2 inst/doc/antaresEditObject.R | 2 inst/doc/antaresEditObject.Rmd | 56 ++++++++ inst/doc/antaresEditObject.html | 53 ++++++++ inst/doc/api-variant-management.R | 4 inst/doc/api-variant-management.html | 168 +++++++++++++------------- inst/doc/renewables-energy-sources.R | 2 inst/doc/scenario-builder.R | 4 man/create-binding-constraint.Rd | 2 man/createCluster.Rd | 2 man/deleteStudy.Rd | 8 - man/editArea.Rd | 5 man/editBindingConstraint.Rd | 2 man/editLink.Rd | 8 - man/filteringOptions.Rd | 9 - man/importZipStudyWeb.Rd |only man/propertiesLinkOptions.Rd | 12 + man/storage_values_default.Rd | 4 man/updateGeneralSettings.Rd | 3 tests/testthat/test-createBindingConstraint.R | 17 ++ tests/testthat/test-createCluster.R | 26 +++- tests/testthat/test-createDSR.R | 5 tests/testthat/test-createStudy.R | 14 ++ tests/testthat/test-editCluster.R | 10 + tests/testthat/test-editLink.R |only tests/testthat/test-playlist.R | 56 ++++++++ tests/testthat/test-updateGeneralSettings.R | 7 - vignettes/antaresEditObject.Rmd | 56 ++++++++ 48 files changed, 858 insertions(+), 341 deletions(-)
More information about antaresEditObject at CRAN
Permanent link
Title: Regression Models with Break-Points / Change-Points Estimation
(with Possibly Random Effects)
Description: Fitting regression models where, in addition to possible linear terms, one or more covariates have segmented (i.e., broken-line
or piece-wise linear) or stepmented (i.e. piece-wise constant) effects.
Multiple breakpoints for the same variable are allowed. The estimation method is discussed in Muggeo (2003, <doi:10.1002/sim.1545>) and
illustrated in Muggeo (2008, <https://www.r-project.org/doc/Rnews/Rnews_2008-1.pdf>). An approach for hypothesis testing is presented
in Muggeo (2016, <doi:10.1080/00949655.2016.1149855>), and interval estimation for the breakpoint is discussed in Muggeo (2017, <doi:10.1111/anzs.12200>).
Segmented mixed models, i.e. random effects in the change point, are discussed in Muggeo (2014, <doi:10.1177/1471082X13504721>).
Estimation of piecewise-constant relationships and changepoints (mean-shift models) is
discussed in Fasola et al. (2018, <doi:10.1007/s00180-017-0740-4>).
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between segmented versions 2.0-3 dated 2024-02-16 and 2.0-4 dated 2024-04-19
segmented-2.0-3/segmented/R/predict.stepmented.R |only segmented-2.0-4/segmented/DESCRIPTION | 8 segmented-2.0-4/segmented/MD5 | 122 - segmented-2.0-4/segmented/NAMESPACE | 6 segmented-2.0-4/segmented/NEWS | 14 segmented-2.0-4/segmented/R/coef.stepmented.r |only segmented-2.0-4/segmented/R/confint.stepmented.R | 20 segmented-2.0-4/segmented/R/draw.history.R | 186 +- segmented-2.0-4/segmented/R/model.matrix.stepmented.r | 165 +- segmented-2.0-4/segmented/R/plot.segmented.r | 4 segmented-2.0-4/segmented/R/plot.stepmented.r | 744 ++++------ segmented-2.0-4/segmented/R/predict.segmented.r | 2 segmented-2.0-4/segmented/R/print.stepmented.r | 9 segmented-2.0-4/segmented/R/print.summary.stepmented.R | 165 +- segmented-2.0-4/segmented/R/seg.Ar.fit.boot.r | 83 - segmented-2.0-4/segmented/R/seg.Ar.fit.r | 102 - segmented-2.0-4/segmented/R/seg.control.R | 9 segmented-2.0-4/segmented/R/seg.def.fit.boot.r | 56 segmented-2.0-4/segmented/R/seg.def.fit.r | 7 segmented-2.0-4/segmented/R/seg.glm.fit.boot.r | 119 + segmented-2.0-4/segmented/R/seg.glm.fit.r | 205 +- segmented-2.0-4/segmented/R/seg.lm.fit.boot.r | 156 +- segmented-2.0-4/segmented/R/seg.lm.fit.r | 266 ++- segmented-2.0-4/segmented/R/seg.num.fit.boot.r | 108 + segmented-2.0-4/segmented/R/seg.num.fit.r | 165 +- segmented-2.0-4/segmented/R/seg.r | 29 segmented-2.0-4/segmented/R/segConstr.glm.fit.boot.r | 109 + segmented-2.0-4/segmented/R/segConstr.glm.fit.r | 89 - segmented-2.0-4/segmented/R/segConstr.lm.fit.boot.r | 105 + segmented-2.0-4/segmented/R/segConstr.lm.fit.r | 797 +++++----- segmented-2.0-4/segmented/R/segmented.Arima.r | 4 segmented-2.0-4/segmented/R/segmented.default.r | 7 segmented-2.0-4/segmented/R/segmented.glm.R | 46 segmented-2.0-4/segmented/R/segmented.lm.R | 46 segmented-2.0-4/segmented/R/segmented.numeric.R | 2 segmented-2.0-4/segmented/R/segreg.r | 54 segmented-2.0-4/segmented/R/selgmented.R | 21 segmented-2.0-4/segmented/R/step.glm.fit.boot.r | 428 +++-- segmented-2.0-4/segmented/R/step.glm.fit.r | 80 - segmented-2.0-4/segmented/R/step.lm.fit.boot.r | 71 segmented-2.0-4/segmented/R/step.lm.fit.r | 610 ++++---- segmented-2.0-4/segmented/R/step.num.fit.boot.r | 417 ++--- segmented-2.0-4/segmented/R/step.num.fit.r | 562 ++++--- segmented-2.0-4/segmented/R/step.ts.fit.boot.r | 424 ++--- segmented-2.0-4/segmented/R/step.ts.fit.r | 53 segmented-2.0-4/segmented/R/stepmented.glm.R | 1108 +++++++-------- segmented-2.0-4/segmented/R/stepmented.lm.R | 1026 ++++++------- segmented-2.0-4/segmented/R/stepmented.numeric.r | 1050 +++++++------- segmented-2.0-4/segmented/R/stepmented.ts.R | 774 +++++----- segmented-2.0-4/segmented/R/summary.stepmented.R | 210 +- segmented-2.0-4/segmented/R/vcov.stepmented.R | 341 ++-- segmented-2.0-4/segmented/man/confint.stepmented.Rd | 14 segmented-2.0-4/segmented/man/draw.history.Rd | 86 - segmented-2.0-4/segmented/man/globTempAnom.Rd | 10 segmented-2.0-4/segmented/man/model.matrix.stepmented.Rd | 114 - segmented-2.0-4/segmented/man/plot.segmented.Rd | 10 segmented-2.0-4/segmented/man/plot.stepmented.Rd | 15 segmented-2.0-4/segmented/man/seg.control.Rd | 27 segmented-2.0-4/segmented/man/seg.lm.fit.Rd | 8 segmented-2.0-4/segmented/man/segmented-package.Rd | 4 segmented-2.0-4/segmented/man/segmented.Rd | 10 segmented-2.0-4/segmented/man/summary.stepmented.Rd | 160 +- segmented-2.0-4/segmented/man/vcov.stepmented.Rd | 28 63 files changed, 6260 insertions(+), 5410 deletions(-)
Title: Easy Study of Patient DICOM Data in Oncology
Description: Exploitation, processing and 2D-3D visualization of DICOM-RT files (structures, dosimetry, imagery) for medical physics and clinical research, in a patient-oriented perspective.
Author: Cathy Fontbonne [aut, cre] ,
Jean-Marc Fontbonne [aut] ,
Nathan Azemar [ctb]
Maintainer: Cathy Fontbonne <contact.espadon@lpccaen.in2p3.fr>
Diff between espadon versions 1.6.0 dated 2024-03-07 and 1.7.0 dated 2024-04-19
espadon-1.6.0/espadon/R/contour.R |only espadon-1.7.0/espadon/DESCRIPTION | 12 espadon-1.7.0/espadon/MD5 | 91 espadon-1.7.0/espadon/NAMESPACE | 3 espadon-1.7.0/espadon/R/RcppExports.R | 10 espadon-1.7.0/espadon/R/add_margin.R | 4 espadon-1.7.0/espadon/R/bin_from_roi.R | 163 espadon-1.7.0/espadon/R/dicom_patient_anonymiser.R |only espadon-1.7.0/espadon/R/dicom_raw_data_anonymizer.R | 2 espadon-1.7.0/espadon/R/dicom_raw_data_loader.R | 2 espadon-1.7.0/espadon/R/dicom_set_tag_value.R | 5 espadon-1.7.0/espadon/R/dicom_to_Rdcm_converter.R | 4 espadon-1.7.0/espadon/R/display_3D_stack.R | 8 espadon-1.7.0/espadon/R/display_plane.R | 21 espadon-1.7.0/espadon/R/espadon-package.R | 1 espadon-1.7.0/espadon/R/espadon_class.R | 3 espadon-1.7.0/espadon/R/espadon_hidden.R | 154 espadon-1.7.0/espadon/R/export.R |only espadon-1.7.0/espadon/R/load_patient_from_Rdcm.R | 8 espadon-1.7.0/espadon/R/load_patient_from_dicom.R | 12 espadon-1.7.0/espadon/R/polyg.R | 221 espadon-1.7.0/espadon/R/ref_cutplane_add.R | 2 espadon-1.7.0/espadon/R/roidata.R |only espadon-1.7.0/espadon/R/rt_indices_from_bin.R | 6 espadon-1.7.0/espadon/R/save_T_MAT.R | 2 espadon-1.7.0/espadon/R/struct_from_mesh.R | 3 espadon-1.7.0/espadon/R/struct_oversampling.R |only espadon-1.7.0/espadon/R/toy_load_patient.R | 20 espadon-1.7.0/espadon/build/espadon.pdf |22170 +++++++++--------- espadon-1.7.0/espadon/build/partial.rdb |binary espadon-1.7.0/espadon/build/stage23.rdb |binary espadon-1.7.0/espadon/build/vignette.rds |binary espadon-1.7.0/espadon/inst/doc/espadon_overview.R | 34 espadon-1.7.0/espadon/inst/doc/espadon_overview.html | 4 espadon-1.7.0/espadon/man/add.margin.Rd | 4 espadon-1.7.0/espadon/man/bin.from.roi.Rd | 5 espadon-1.7.0/espadon/man/dicom.patient.anonymiser.Rd |only espadon-1.7.0/espadon/man/dicom.raw.data.loader.Rd | 2 espadon-1.7.0/espadon/man/dicom.to.Rdcm.converter.Rd | 4 espadon-1.7.0/espadon/man/display.3D.stack.Rd | 8 espadon-1.7.0/espadon/man/espadon-package.Rd | 2 espadon-1.7.0/espadon/man/espadon.class.Rd | 3 espadon-1.7.0/espadon/man/export.Rd |only espadon-1.7.0/espadon/man/load.patient.from.dicom.Rd | 5 espadon-1.7.0/espadon/man/ref.cutplane.add.Rd | 2 espadon-1.7.0/espadon/man/rt.indices.from.bin.Rd | 6 espadon-1.7.0/espadon/src/RcppExports.cpp | 40 espadon-1.7.0/espadon/src/addcommonptC.cpp |only espadon-1.7.0/espadon/src/fantovoxelC.cpp | 1 espadon-1.7.0/espadon/src/ptnearestC.cpp |only espadon-1.7.0/espadon/src/roiinterC.cpp | 18 51 files changed, 11909 insertions(+), 11156 deletions(-)
Title: Comparison of Bioregionalisation Methods
Description: The main purpose of this package is to propose a transparent methodological framework to compare bioregionalisation methods based on hierarchical and non-hierarchical clustering algorithms (Kreft & Jetz (2010) <doi:10.1111/j.1365-2699.2010.02375.x>) and network algorithms (Lenormand et al. (2019) <doi:10.1002/ece3.4718> and Leroy et al. (2019) <doi:10.1111/jbi.13674>).
Author: Maxime Lenormand [aut, cre] ,
Boris Leroy [aut] ,
Pierre Denelle [aut]
Maintainer: Maxime Lenormand <maxime.lenormand@inrae.fr>
Diff between bioregion versions 1.1.0 dated 2024-03-19 and 1.1.1 dated 2024-04-19
DESCRIPTION | 6 MD5 | 114 ++++---- NEWS.md | 33 ++ R/cut_tree.R | 4 R/dissimilarity.R | 19 - R/find_optimal_n.R | 53 +++- R/generic_functions.R | 10 R/hclu_diana.R | 126 +++------ R/hclu_hierarclust.R | 173 +++++-------- R/hclu_optics.R | 160 ++++++------ R/install_binaries.R | 6 R/mat_to_net.R | 18 - R/net_to_mat.R | 24 - R/netclu_beckett.R | 97 ++++--- R/netclu_greedy.R | 45 ++- R/netclu_infomap.R | 118 +++++---- R/netclu_labelprop.R | 64 +++- R/netclu_leadingeigen.R | 46 ++- R/netclu_leiden.R | 114 +++++--- R/netclu_louvain.R | 132 +++++++--- R/netclu_oslom.R | 179 ++++++++----- R/netclu_walktrap.R | 48 ++- R/nhclu_clara.R | 185 +++++++------- R/nhclu_clarans.R | 150 ++++++----- R/nhclu_dbscan.R | 118 +++++---- R/nhclu_kmeans.R | 167 ++++++------ R/nhclu_pam.R | 187 +++++++------- R/similarity.R | 97 +++---- R/similarity_dissimilarity_conversion.R | 26 -- R/utils.R | 415 ++++++++++++++++++++------------ README.md | 17 - build/bioregion.pdf |binary build/partial.rdb |binary build/stage23.rdb |binary inst/doc/bioregion.Rmd | 11 inst/doc/bioregion.html | 13 - man/dissimilarity.Rd | 15 - man/dissimilarity_to_similarity.Rd | 8 man/hclu_diana.Rd | 15 - man/hclu_hierarclust.Rd | 33 +- man/hclu_optics.Rd | 32 +- man/netclu_beckett.Rd | 37 +- man/netclu_greedy.Rd | 18 - man/netclu_infomap.Rd | 19 - man/netclu_labelprop.Rd | 21 + man/netclu_leadingeigen.Rd | 19 - man/netclu_leiden.Rd | 30 +- man/netclu_louvain.Rd | 33 +- man/netclu_oslom.Rd | 37 +- man/netclu_walktrap.Rd | 18 - man/nhclu_clara.Rd | 41 ++- man/nhclu_clarans.Rd | 26 +- man/nhclu_dbscan.Rd | 23 + man/nhclu_kmeans.Rd | 34 +- man/nhclu_pam.Rd | 34 +- man/similarity.Rd | 10 man/similarity_to_dissimilarity.Rd | 8 vignettes/bioregion.Rmd | 11 58 files changed, 2030 insertions(+), 1467 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization, Stochastic dominance and Advanced Monte Carlo sampling. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 10.7 dated 2024-03-06 and 10.8 dated 2024-04-19
DESCRIPTION | 12 +- MD5 | 78 +++++++++---------- NAMESPACE | 5 - R/ARMA.R | 2 R/ARMA_optim.R | 2 R/Boost.R | 6 - R/Internal_Functions.R | 73 +++++++++++++++++ R/NNS_term_matrix.R | 4 R/Nowcast.R | 1 R/Stack.R | 6 - R/gvload.R | 5 - inst/doc/NNSvignette_Classification.R | 1 inst/doc/NNSvignette_Classification.Rmd | 1 inst/doc/NNSvignette_Classification.html | 3 inst/doc/NNSvignette_Clustering_and_Regression.R | 1 inst/doc/NNSvignette_Clustering_and_Regression.Rmd | 1 inst/doc/NNSvignette_Clustering_and_Regression.html | 3 inst/doc/NNSvignette_Comparing_Distributions.R | 1 inst/doc/NNSvignette_Comparing_Distributions.Rmd | 1 inst/doc/NNSvignette_Comparing_Distributions.html | 3 inst/doc/NNSvignette_Correlation_and_Dependence.R | 1 inst/doc/NNSvignette_Correlation_and_Dependence.Rmd | 1 inst/doc/NNSvignette_Correlation_and_Dependence.html | 3 inst/doc/NNSvignette_Forecasting.R | 1 inst/doc/NNSvignette_Forecasting.Rmd | 1 inst/doc/NNSvignette_Forecasting.html | 3 inst/doc/NNSvignette_Sampling.R | 1 inst/doc/NNSvignette_Sampling.Rmd | 1 inst/doc/NNSvignette_Sampling.html | 3 man/NNS.ARMA.Rd | 2 man/NNS.ARMA.optim.Rd | 2 man/NNS.boost.Rd | 2 man/NNS.nowcast.Rd | 1 man/NNS.stack.Rd | 2 vignettes/NNSvignette_Classification.Rmd | 1 vignettes/NNSvignette_Clustering_and_Regression.Rmd | 1 vignettes/NNSvignette_Comparing_Distributions.Rmd | 1 vignettes/NNSvignette_Correlation_and_Dependence.Rmd | 1 vignettes/NNSvignette_Forecasting.Rmd | 1 vignettes/NNSvignette_Sampling.Rmd | 1 40 files changed, 142 insertions(+), 97 deletions(-)
Title: A Flexible Class for Messy Dates
Description: Contains a set of tools for constructing and coercing
into and from the "mdate" class.
This date class implements ISO 8601-2:2019(E) and
allows regular dates to be annotated
to express unspecified date components,
approximate or uncertain date components,
date ranges, and sets of dates.
This is useful for describing and analysing temporal information,
whether historical or recent, where date precision may vary.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Nathan Werth [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between messydates versions 0.3.5 dated 2023-01-20 and 0.4.1 dated 2024-04-19
messydates-0.3.5/messydates/man/logical-class.Rd |only messydates-0.3.5/messydates/man/logical.Rd |only messydates-0.4.1/messydates/DESCRIPTION | 23 messydates-0.4.1/messydates/MD5 | 73 +- messydates-0.4.1/messydates/NAMESPACE | 38 + messydates-0.4.1/messydates/NEWS.md | 25 messydates-0.4.1/messydates/R/class.R | 76 +- messydates-0.4.1/messydates/R/coerce_from_messydate.R | 10 messydates-0.4.1/messydates/R/coerce_to_messydate.R | 121 +++- messydates-0.4.1/messydates/R/duration.R |only messydates-0.4.1/messydates/R/expand.R | 36 - messydates-0.4.1/messydates/R/logical.R | 154 +++++ messydates-0.4.1/messydates/R/messydates-defunct.R |only messydates-0.4.1/messydates/R/operate.R | 116 ++-- messydates-0.4.1/messydates/R/proportional.R |only messydates-0.4.1/messydates/R/resolve.R | 1 messydates-0.4.1/messydates/R/set.R | 49 + messydates-0.4.1/messydates/README.md | 6 messydates-0.4.1/messydates/build/vignette.rds |binary messydates-0.4.1/messydates/inst/CITATION | 4 messydates-0.4.1/messydates/inst/doc/messydates.R | 19 messydates-0.4.1/messydates/inst/doc/messydates.Rmd | 26 messydates-0.4.1/messydates/inst/doc/messydates.html | 269 +++++----- messydates-0.4.1/messydates/man/class.Rd | 8 messydates-0.4.1/messydates/man/defunct.Rd |only messydates-0.4.1/messydates/man/duration_class.Rd |only messydates-0.4.1/messydates/man/expand.Rd | 2 messydates-0.4.1/messydates/man/logical_tests.Rd |only messydates-0.4.1/messydates/man/messydate.Rd | 23 messydates-0.4.1/messydates/man/operate.Rd | 10 messydates-0.4.1/messydates/man/proportional.Rd |only messydates-0.4.1/messydates/man/set.Rd | 28 - messydates-0.4.1/messydates/tests/testthat/test-class.R | 50 + messydates-0.4.1/messydates/tests/testthat/test-coerce-from.R | 11 messydates-0.4.1/messydates/tests/testthat/test-coerce-to.R | 38 + messydates-0.4.1/messydates/tests/testthat/test-logical.R | 71 ++ messydates-0.4.1/messydates/tests/testthat/test-messydate-make.R | 4 messydates-0.4.1/messydates/tests/testthat/test-operate.R | 13 messydates-0.4.1/messydates/tests/testthat/test-proportional.R |only messydates-0.4.1/messydates/tests/testthat/test-resolve.R | 14 messydates-0.4.1/messydates/tests/testthat/test-set.R | 11 messydates-0.4.1/messydates/tests/testthat/test_duration.R |only messydates-0.4.1/messydates/vignettes/messydates.Rmd | 26 43 files changed, 988 insertions(+), 367 deletions(-)
Title: Extensions for 'HDF5' R Interfaces
Description: Some methods to manipulate 'HDF5' files, extending the 'hdf5r' package. Reading and writing R objects to 'HDF5' formats follow the specification of 'AnnData' <https://anndata.readthedocs.io/en/latest/fileformat-prose.html>.
Author: Yuchen Li [aut, cre]
Maintainer: Yuchen Li <ycli1995@outlook.com>
Diff between hdf5r.Extra versions 0.0.5 dated 2024-01-29 and 0.0.6 dated 2024-04-19
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 1 + NEWS.md | 6 +++++- R/hdf5-functions.R | 48 ++++++++++++++++++++---------------------------- R/hdf5-internal.R | 29 +++++++++++------------------ R/hdf5-methods.R | 2 +- R/zzz.R | 1 + 8 files changed, 50 insertions(+), 59 deletions(-)
Title: Wrapper Functions Collection Used in Data Pipelines
Description: The goal of this package is to provide wrapper functions in the
data cleaning and cleansing processes. These function helps in messages and
interaction with the user, keep track of information in pipelines, help in
the wrangling, munging, assessment and visualization of data frame-like
material.
Author: Guillaume Fabre [aut, cre],
Maelstrom-Research [fnd]
Maintainer: Guillaume Fabre <guijoseph.fabre@gmail.com>
Diff between fabR versions 2.0.1 dated 2023-11-02 and 2.1.0 dated 2024-04-19
fabR-2.0.1/fabR/man/fabR_help.Rd |only fabR-2.1.0/fabR/DESCRIPTION | 12 - fabR-2.1.0/fabR/MD5 | 54 ++--- fabR-2.1.0/fabR/NAMESPACE | 103 +++++----- fabR-2.1.0/fabR/NEWS.md | 47 ++++ fabR-2.1.0/fabR/R/00-utils.R | 162 +++------------- fabR-2.1.0/fabR/R/02-dates.R | 258 ++++++++++++++++++--------- fabR-2.1.0/fabR/R/03-viz.R | 12 - fabR-2.1.0/fabR/R/04-check_table_values.R | 120 ++++-------- fabR-2.1.0/fabR/R/05-as_any.R |only fabR-2.1.0/fabR/R/deprecated.R | 24 ++ fabR-2.1.0/fabR/README.md | 2 fabR-2.1.0/fabR/build/vignette.rds |binary fabR-2.1.0/fabR/inst/WORDLIST | 4 fabR-2.1.0/fabR/inst/doc/fabR-vignette.R | 2 fabR-2.1.0/fabR/inst/doc/fabR-vignette.Rmd | 2 fabR-2.1.0/fabR/inst/doc/fabR-vignette.html | 2 fabR-2.1.0/fabR/man/as_any_boolean.Rd | 2 fabR-2.1.0/fabR/man/as_any_date.Rd | 9 fabR-2.1.0/fabR/man/as_any_integer.Rd |only fabR-2.1.0/fabR/man/as_any_symbol.Rd | 2 fabR-2.1.0/fabR/man/bookdown_open.Rd | 12 - fabR-2.1.0/fabR/man/deprecated.Rd | 7 fabR-2.1.0/fabR/man/fabR_website.Rd |only fabR-2.1.0/fabR/man/guess_date_format.Rd | 28 +- fabR-2.1.0/fabR/man/read_csv_any_formats.Rd | 3 fabR-2.1.0/fabR/man/read_excel_allsheets.Rd | 19 + fabR-2.1.0/fabR/man/which_any_date.Rd | 14 - fabR-2.1.0/fabR/man/write_excel_allsheets.Rd | 22 ++ fabR-2.1.0/fabR/vignettes/fabR-vignette.Rmd | 2 30 files changed, 498 insertions(+), 426 deletions(-)
Title: Bayesian Preference Learning with the Mallows Rank Model
Description: An implementation of the Bayesian version of the Mallows rank model
(Vitelli et al., Journal of Machine Learning Research, 2018 <https://jmlr.org/papers/v18/15-481.html>;
Crispino et al., Annals of Applied Statistics, 2019 <doi:10.1214/18-AOAS1203>;
Sorensen et al., R Journal, 2020 <doi:10.32614/RJ-2020-026>;
Stein, PhD Thesis, 2023 <https://eprints.lancs.ac.uk/id/eprint/195759>). Both Metropolis-Hastings
and sequential Monte Carlo algorithms for estimating the models are available. Cayley, footrule,
Hamming, Kendall, Spearman, and Ulam distances are supported in the models. The rank data to be
analyzed can be in the form of complete rankings, top-k rankings, partially missing rankings, as well
as consistent and inconsistent pairwise preferences. Several functions for plotting and studying the
posterior distributions of parameters are provided. The package also provides functions for estimating
the partition function (normalizing constant) of the Mallows rank mo [...truncated...]
Author: Oystein Sorensen [aut, cre] ,
Waldir Leoncio [aut],
Valeria Vitelli [aut] ,
Marta Crispino [aut],
Qinghua Liu [aut],
Cristina Mollica [aut],
Luca Tardella [aut],
Anja Stein [aut]
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>
Diff between BayesMallows versions 2.1.1 dated 2024-03-15 and 2.2.0 dated 2024-04-19
BayesMallows-2.1.1/BayesMallows/R/all_topological_sorts.R |only BayesMallows-2.1.1/BayesMallows/src/subset.cpp |only BayesMallows-2.2.0/BayesMallows/DESCRIPTION | 11 BayesMallows-2.2.0/BayesMallows/MD5 | 121 +++++----- BayesMallows-2.2.0/BayesMallows/NAMESPACE | 2 BayesMallows-2.2.0/BayesMallows/NEWS.md | 36 ++ BayesMallows-2.2.0/BayesMallows/R/RcppExports.R | 8 BayesMallows-2.2.0/BayesMallows/R/compute_exact_partition_function.R |only BayesMallows-2.2.0/BayesMallows/R/compute_mallows.R | 15 - BayesMallows-2.2.0/BayesMallows/R/compute_mallows_mixtures.R | 9 BayesMallows-2.2.0/BayesMallows/R/compute_mallows_sequentially.R | 8 BayesMallows-2.2.0/BayesMallows/R/estimate_partition_function.R | 4 BayesMallows-2.2.0/BayesMallows/R/generate_initial_ranking.R | 77 +----- BayesMallows-2.2.0/BayesMallows/R/generate_transitive_closure.R | 6 BayesMallows-2.2.0/BayesMallows/R/get_cardinalities.R | 2 BayesMallows-2.2.0/BayesMallows/R/set_progress_report.R |only BayesMallows-2.2.0/BayesMallows/R/set_smc_options.R | 11 BayesMallows-2.2.0/BayesMallows/R/setup_rank_data.R | 43 +-- BayesMallows-2.2.0/BayesMallows/R/smc_misc.R | 10 BayesMallows-2.2.0/BayesMallows/R/update_mallows.R | 15 - BayesMallows-2.2.0/BayesMallows/R/validation_functions.R | 2 BayesMallows-2.2.0/BayesMallows/build/partial.rdb |binary BayesMallows-2.2.0/BayesMallows/inst/examples/compute_exact_partition_function_example.R |only BayesMallows-2.2.0/BayesMallows/inst/examples/compute_mallows_example.R | 4 BayesMallows-2.2.0/BayesMallows/inst/examples/label_switching_example.R | 6 BayesMallows-2.2.0/BayesMallows/inst/examples/update_mallows_example.R | 11 BayesMallows-2.2.0/BayesMallows/man/compute_exact_partition_function.Rd |only BayesMallows-2.2.0/BayesMallows/man/compute_mallows.Rd | 21 - BayesMallows-2.2.0/BayesMallows/man/compute_mallows_mixtures.Rd | 7 BayesMallows-2.2.0/BayesMallows/man/estimate_partition_function.Rd | 3 BayesMallows-2.2.0/BayesMallows/man/get_cardinalities.Rd | 3 BayesMallows-2.2.0/BayesMallows/man/get_transitive_closure.Rd | 1 BayesMallows-2.2.0/BayesMallows/man/plot.SMCMallows.Rd | 11 BayesMallows-2.2.0/BayesMallows/man/set_compute_options.Rd | 1 BayesMallows-2.2.0/BayesMallows/man/set_initial_values.Rd | 1 BayesMallows-2.2.0/BayesMallows/man/set_model_options.Rd | 1 BayesMallows-2.2.0/BayesMallows/man/set_priors.Rd | 1 BayesMallows-2.2.0/BayesMallows/man/set_progress_report.Rd |only BayesMallows-2.2.0/BayesMallows/man/set_smc_options.Rd | 13 - BayesMallows-2.2.0/BayesMallows/man/setup_rank_data.Rd | 41 +-- BayesMallows-2.2.0/BayesMallows/man/update_mallows.Rd | 11 BayesMallows-2.2.0/BayesMallows/src/RcppExports.cpp | 23 + BayesMallows-2.2.0/BayesMallows/src/all_topological_sorts.cpp |only BayesMallows-2.2.0/BayesMallows/src/all_topological_sorts.h |only BayesMallows-2.2.0/BayesMallows/src/distances.cpp | 81 +++--- BayesMallows-2.2.0/BayesMallows/src/distances.h | 4 BayesMallows-2.2.0/BayesMallows/src/missing_data.h | 3 BayesMallows-2.2.0/BayesMallows/src/missing_data_functions.cpp | 24 + BayesMallows-2.2.0/BayesMallows/src/particles.cpp | 61 ++++- BayesMallows-2.2.0/BayesMallows/src/particles.h | 3 BayesMallows-2.2.0/BayesMallows/src/progress_reporter.cpp | 5 BayesMallows-2.2.0/BayesMallows/src/progress_reporter.h | 2 BayesMallows-2.2.0/BayesMallows/src/rank_proposal.cpp | 3 BayesMallows-2.2.0/BayesMallows/src/rank_proposal.h | 8 BayesMallows-2.2.0/BayesMallows/src/run_mcmc.cpp | 4 BayesMallows-2.2.0/BayesMallows/src/run_smc.cpp | 2 BayesMallows-2.2.0/BayesMallows/src/smc_augmentation_class.cpp | 1 BayesMallows-2.2.0/BayesMallows/src/smc_classes.h | 3 BayesMallows-2.2.0/BayesMallows/src/smc_data_class.cpp | 14 + BayesMallows-2.2.0/BayesMallows/tests/testthat/test-compute_exact_partition_function.R |only BayesMallows-2.2.0/BayesMallows/tests/testthat/test-compute_rank_distance.R | 16 + BayesMallows-2.2.0/BayesMallows/tests/testthat/test-mcmc_correctness.R | 4 BayesMallows-2.2.0/BayesMallows/tests/testthat/test-plot_top_k.R | 2 BayesMallows-2.2.0/BayesMallows/tests/testthat/test-set_progress_report.R |only BayesMallows-2.2.0/BayesMallows/tests/testthat/test-setup_rank_data.R | 23 - BayesMallows-2.2.0/BayesMallows/tests/testthat/test-smc_pairwise.R | 97 +++++++- BayesMallows-2.2.0/BayesMallows/tests/testthat/test-smc_update_correctness.R | 38 +-- 67 files changed, 591 insertions(+), 346 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-18 0.4.2
2021-03-29 0.4.1
2018-11-24 0.3.0
2018-08-30 0.2.2
2018-05-13 0.2.0
2018-02-27 0.1.2