Title: Visualize Simon's Two-Stage Design
Description: To visualize the probabilities of early
termination, fail and success of Simon's two-stage
design. To evaluate and visualize the operating
characteristics of Simon's two-stage design.
Author: Tingting Zhan [aut, cre, cph]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between VisualizeSimon2Stage versions 0.1.3 dated 2024-03-20 and 0.1.4 dated 2024-04-22
VisualizeSimon2Stage-0.1.3/VisualizeSimon2Stage/R/0info.R |only VisualizeSimon2Stage-0.1.3/VisualizeSimon2Stage/inst |only VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/DESCRIPTION | 21 +- VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/MD5 | 37 +-- VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/NAMESPACE | 3 VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/NEWS.md | 2 VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/R/0PACKAGE.R |only VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/R/Simon_oc.R | 45 ++-- VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/R/Simon_pr.R | 72 ------- VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/R/autoplot.ph2simon.R |only VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/R/ph2simon_etc.R | 99 ---------- VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/R/r_simon.R |only VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/man/Simon_oc.Rd | 25 +- VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/man/Simon_pr.Rd | 19 - VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/man/Sprintf.Simon_oc.Rd | 1 VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/man/Sprintf.ph2simon.Rd | 3 VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/man/VisualizeSimon2Stage-package.Rd | 11 - VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/man/autoplot.ph2simon.Rd | 32 +++ VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/man/print_ph2simon.Rd | 2 VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/man/r_simon.Rd | 16 - VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/man/show-Simon_oc-method.Rd | 1 VisualizeSimon2Stage-0.1.4/VisualizeSimon2Stage/man/show-Simon_pr-method.Rd | 1 22 files changed, 135 insertions(+), 255 deletions(-)
More information about VisualizeSimon2Stage at CRAN
Permanent link
Title: Soil Database Interface
Description: A collection of functions for reading soil data from U.S. Department of Agriculture Natural Resources Conservation Service (USDA-NRCS) and National Cooperative Soil Survey (NCSS) databases.
Author: Dylan Beaudette [aut],
Jay Skovlin [aut],
Stephen Roecker [aut],
Andrew Brown [aut, cre]
Maintainer: Andrew Brown <andrew.g.brown@usda.gov>
Diff between soilDB versions 2.8.1 dated 2024-01-09 and 2.8.2 dated 2024-04-22
soilDB-2.8.1/soilDB/man/dot-get_SRI_gdb_names.Rd |only soilDB-2.8.2/soilDB/DESCRIPTION | 8 soilDB-2.8.2/soilDB/MD5 | 81 soilDB-2.8.2/soilDB/NAMESPACE | 3 soilDB-2.8.2/soilDB/NEWS.md | 24 soilDB-2.8.2/soilDB/R/ISSR800.R | 9 soilDB-2.8.2/soilDB/R/ROSETTA.R | 16 soilDB-2.8.2/soilDB/R/SDA-spatial.R | 236 - soilDB-2.8.2/soilDB/R/WCS-utils.R | 10 soilDB-2.8.2/soilDB/R/fetchLDM.R | 2 soilDB-2.8.2/soilDB/R/fetchSDA_spatial.R | 36 soilDB-2.8.2/soilDB/R/fetchSRI.R | 3 soilDB-2.8.2/soilDB/R/fetchSoilGrids.R | 66 soilDB-2.8.2/soilDB/R/get_SDA_coecoclass.R | 2 soilDB-2.8.2/soilDB/R/get_ecosite_history_from_NASIS_db.R | 5 soilDB-2.8.2/soilDB/R/get_mapunit_from_NASIS.R | 15 soilDB-2.8.2/soilDB/R/get_site_data_from_NASIS_db.R | 44 soilDB-2.8.2/soilDB/R/get_soilseries_from_NASIS.R | 33 soilDB-2.8.2/soilDB/R/mukey-WCS.R | 22 soilDB-2.8.2/soilDB/R/seriesExtent.R | 2 soilDB-2.8.2/soilDB/R/simplifyArtifactData.R | 15 soilDB-2.8.2/soilDB/R/simplifyFragmentData.R | 11 soilDB-2.8.2/soilDB/R/soilColorWCS.R | 13 soilDB-2.8.2/soilDB/R/soilDB-package.R | 6 soilDB-2.8.2/soilDB/R/utils.R | 8 soilDB-2.8.2/soilDB/build/partial.rdb |binary soilDB-2.8.2/soilDB/build/vignette.rds |binary soilDB-2.8.2/soilDB/inst/doc/fetchNASIS.R | 2 soilDB-2.8.2/soilDB/inst/doc/fetchNASIS.html | 144 + soilDB-2.8.2/soilDB/inst/doc/wcs-ssurgo.R | 29 soilDB-2.8.2/soilDB/inst/doc/wcs-ssurgo.Rmd | 23 soilDB-2.8.2/soilDB/inst/doc/wcs-ssurgo.html | 1361 +++++------ soilDB-2.8.2/soilDB/man/ROSETTA.Rd | 4 soilDB-2.8.2/soilDB/man/SDA_spatialQuery.Rd | 5 soilDB-2.8.2/soilDB/man/fetchSoilGrids.Rd | 12 soilDB-2.8.2/soilDB/man/get_ecosite_history_from_NASIS_db.Rd | 9 soilDB-2.8.2/soilDB/man/get_soilseries_from_NASIS.Rd | 12 soilDB-2.8.2/soilDB/man/soilColor.wcs.Rd | 2 soilDB-2.8.2/soilDB/man/soilDB-package.Rd | 1 soilDB-2.8.2/soilDB/tests/testthat/test-fetchSDA_spatial.R | 1 soilDB-2.8.2/soilDB/tests/testthat/test-fetchSoilGrids.R | 2 soilDB-2.8.2/soilDB/vignettes/wcs-ssurgo.Rmd | 23 42 files changed, 1242 insertions(+), 1058 deletions(-)
Title: Weighted Confusion Matrix
Description: Allows users to create weighted confusion matrices and accuracy
metrics that help with the model selection process for classification
problems, where distance from the correct category is important. The
package includes several weighting schemes which can be parameterized, as
well as custom configuration options. Furthermore, users can decide
whether they wish to positively or negatively affect the accuracy score
as a result of applying weights to the confusion matrix. Functions are
included to calculate accuracy metrics for imbalanced data. Finally,
'wconf' integrates well with the 'caret' package, but it can also work
standalone when provided data in matrix form.
References:
Kuhn, M. (2008) "Building Perspective Models in R Using the caret Package"
<doi:10.18637/jss.v028.i05>
Monahov, A. (2021) "Model Evaluation with Weighted Threshold Optimization
(and the mewto R package)" <doi:10.2139/ssrn.3805911>
Starovoitov, V., Golub, Y. (2020). New Function for Estimating Imbalanc [...truncated...]
Author: Alexandru Monahov [aut, cre, cph]
Maintainer: Alexandru Monahov <alexandru.monahov@proton.me>
Diff between wconf versions 1.0.0 dated 2023-12-12 and 1.1.0 dated 2024-04-22
DESCRIPTION | 17 +- MD5 | 30 ++-- NAMESPACE | 1 NEWS.md | 17 ++ R/balancedaccuracy.R |only R/wconf-package.R | 9 + R/wconfusionmatrix.R | 58 +++++++- R/weightmatrix.R | 75 +++++++++- README.md | 22 +++ inst/doc/wconf_guide.R | 35 +++++ inst/doc/wconf_guide.Rmd | 201 ++++++++++++++++++++++++++++ inst/doc/wconf_guide.html | 320 +++++++++++++++++++++++++++++++++++++++++----- man/balancedaccuracy.Rd |only man/wconf-package.Rd | 10 + man/wconfusionmatrix.Rd | 19 ++ man/weightmatrix.Rd | 25 +++ vignettes/wconf_guide.Rmd | 201 ++++++++++++++++++++++++++++ 17 files changed, 965 insertions(+), 75 deletions(-)
Title: 'tidyverse' Methods and 'ggplot2' Helpers for 'terra' Objects
Description: Extension of the 'tidyverse' for 'SpatRaster' and
'SpatVector' objects of the 'terra' package. It includes also new
'geom_' functions that provide a convenient way of visualizing 'terra'
objects with 'ggplot2'.
Author: Diego Hernangomez [aut, cre, cph]
,
Dewey Dunnington [ctb] ,
ggplot2 authors [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between tidyterra versions 0.5.2 dated 2024-01-19 and 0.6.0 dated 2024-04-22
tidyterra-0.5.2/tidyterra/man/drop_na.SpatRaster.Rd |only tidyterra-0.5.2/tidyterra/man/drop_na.SpatVector.Rd |only tidyterra-0.6.0/tidyterra/DESCRIPTION | 18 tidyterra-0.6.0/tidyterra/MD5 | 264 - tidyterra-0.6.0/tidyterra/NAMESPACE | 13 tidyterra-0.6.0/tidyterra/NEWS.md | 72 tidyterra-0.6.0/tidyterra/R/arrange-SpatVector.R | 20 tidyterra-0.6.0/tidyterra/R/as_coordinates.R | 16 tidyterra-0.6.0/tidyterra/R/as_sf.R | 20 tidyterra-0.6.0/tidyterra/R/as_spatraster.R | 56 tidyterra-0.6.0/tidyterra/R/as_spatvector.R | 41 tidyterra-0.6.0/tidyterra/R/as_tibble-Spat.R | 71 tidyterra-0.6.0/tidyterra/R/autoplot-Spat.R | 19 tidyterra-0.6.0/tidyterra/R/bind-cols-SpatVector.R | 38 tidyterra-0.6.0/tidyterra/R/bind-rows-SpatVector.R | 32 tidyterra-0.6.0/tidyterra/R/compare_spatrasters.R | 26 tidyterra-0.6.0/tidyterra/R/count-tally-SpatVector.R | 18 tidyterra-0.6.0/tidyterra/R/data.R | 61 tidyterra-0.6.0/tidyterra/R/distinct-SpatVector.R | 16 tidyterra-0.6.0/tidyterra/R/drop_na-Spat.R | 122 tidyterra-0.6.0/tidyterra/R/fill-SpatVector.R |only tidyterra-0.6.0/tidyterra/R/filter-Spat.R | 39 tidyterra-0.6.0/tidyterra/R/fortify-Spat.R | 104 tidyterra-0.6.0/tidyterra/R/geom_spat_contour.R | 94 tidyterra-0.6.0/tidyterra/R/geom_spat_contour_fill.R | 1 tidyterra-0.6.0/tidyterra/R/geom_spat_contour_text.R |only tidyterra-0.6.0/tidyterra/R/geom_spatraster.R | 78 tidyterra-0.6.0/tidyterra/R/geom_spatraster_rgb.R | 595 +-- tidyterra-0.6.0/tidyterra/R/geom_spatvector.R | 20 tidyterra-0.6.0/tidyterra/R/glimpse-Spat.R | 428 +- tidyterra-0.6.0/tidyterra/R/group-by-SpatVector.R | 30 tidyterra-0.6.0/tidyterra/R/group-data-SpatVector.R | 10 tidyterra-0.6.0/tidyterra/R/grouped-SpatVector.R | 12 tidyterra-0.6.0/tidyterra/R/join-SpatVector.R | 23 tidyterra-0.6.0/tidyterra/R/mutate-Spat.R | 35 tidyterra-0.6.0/tidyterra/R/pivot-long-SpatVector.R |only tidyterra-0.6.0/tidyterra/R/pivot-wide-SpatVector.R |only tidyterra-0.6.0/tidyterra/R/pull-Spat.R | 26 tidyterra-0.6.0/tidyterra/R/pull_crs.R | 31 tidyterra-0.6.0/tidyterra/R/relocate-Spat.R | 22 tidyterra-0.6.0/tidyterra/R/rename-Spat.R | 25 tidyterra-0.6.0/tidyterra/R/replace_na-Spat.R | 11 tidyterra-0.6.0/tidyterra/R/rowwise-SpatVector.R | 34 tidyterra-0.6.0/tidyterra/R/scales_coltab.R | 28 tidyterra-0.6.0/tidyterra/R/scales_cross_blended.R | 1510 +++++----- tidyterra-0.6.0/tidyterra/R/scales_hypso.R | 1484 ++++----- tidyterra-0.6.0/tidyterra/R/scales_terrain.R | 509 +-- tidyterra-0.6.0/tidyterra/R/scales_whitebox.R | 711 ++-- tidyterra-0.6.0/tidyterra/R/scales_wiki.R | 604 ++-- tidyterra-0.6.0/tidyterra/R/select-Spat.R | 31 tidyterra-0.6.0/tidyterra/R/slice-Spat.R | 56 tidyterra-0.6.0/tidyterra/R/stat_spat_coordinates.R | 6 tidyterra-0.6.0/tidyterra/R/stat_spatraster.R | 16 tidyterra-0.6.0/tidyterra/R/summarise-SpatVector.R | 21 tidyterra-0.6.0/tidyterra/R/sysdata.rda |binary tidyterra-0.6.0/tidyterra/R/tidyterra-package.R | 5 tidyterra-0.6.0/tidyterra/README.md | 174 - 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Title: Analyses of Text using Transformers Models from HuggingFace,
Natural Language Processing and Machine Learning
Description: Link R with Transformers from Hugging Face to transform text variables to word embeddings; where the word embeddings are used to statistically test the mean difference between set of texts, compute semantic similarity scores between texts, predict numerical variables, and visual statistically significant words according to various dimensions etc. For more information see <https://www.r-text.org>.
Author: Oscar Kjell [aut, cre] ,
Salvatore Giorgi [aut] ,
Andrew Schwartz [aut]
Maintainer: Oscar Kjell <oscar.kjell@psy.lu.se>
Diff between text versions 1.2.0 dated 2024-02-13 and 1.2.1 dated 2024-04-22
text-1.2.0/text/tests/testthat/notrun/test_6_finetune.R |only text-1.2.0/text/tests/testthat/test_1_Analyses_flow.R |only text-1.2.0/text/tests/testthat/test_2_1_textTrain_strata.R |only text-1.2.0/text/tests/testthat/test_2_textTrain.R |only text-1.2.0/text/tests/testthat/test_99_textEmbed.R |only text-1.2.1/text/DESCRIPTION | 8 text-1.2.1/text/MD5 | 104 +-- text-1.2.1/text/NAMESPACE | 3 text-1.2.1/text/NEWS.md | 5 text-1.2.1/text/R/0_0_text_install.R | 234 +++---- text-1.2.1/text/R/0_1_globals.R | 4 text-1.2.1/text/R/0_2_privateFunctions.R | 324 ++++++---- text-1.2.1/text/R/0_3_textModels.R | 18 text-1.2.1/text/R/1_1_textEmbed.R | 269 +++++--- text-1.2.1/text/R/2_1_textTrain.R | 13 text-1.2.1/text/R/2_2_textTrainRegression.R | 142 ++-- text-1.2.1/text/R/2_3_textTrainRandomForest.R | 199 ++++-- text-1.2.1/text/R/2_4_textPredict.R | 288 +++++--- text-1.2.1/text/R/2_5_textTrainN.R | 226 +++--- text-1.2.1/text/R/3_1_textSimilarity.R | 2 text-1.2.1/text/R/4_0_textPlot.R | 5 text-1.2.1/text/R/4_1_textPlotCentrality.R | 2 text-1.2.1/text/R/4_3_textPlotProjection.R | 2 text-1.2.1/text/R/6_1_textFineTune.R | 10 text-1.2.1/text/R/6_2_textFineTuneDomain.R | 3 text-1.2.1/text/R/7_1_textTopics.R | 114 +++ text-1.2.1/text/R/7_2_textTopicsAnalysis.R | 4 text-1.2.1/text/R/zzz.R | 2 text-1.2.1/text/build/vignette.rds |binary text-1.2.1/text/inst/doc/pre_trained_models.R |only text-1.2.1/text/inst/doc/pre_trained_models.Rmd |only text-1.2.1/text/inst/doc/pre_trained_models.html |only text-1.2.1/text/inst/extdata/text_models_info.csv |only text-1.2.1/text/inst/python/__pycache__/run_mlm.cpython-39.pyc |binary text-1.2.1/text/inst/python/bert_topic.py | 56 + text-1.2.1/text/inst/python/huggingface_Interface3.py | 109 ++- text-1.2.1/text/inst/python/huggingface_Interface4.py | 11 text-1.2.1/text/man/textEmbed.Rd | 18 text-1.2.1/text/man/textEmbedLayerAggregation.Rd | 6 text-1.2.1/text/man/textEmbedRawLayers.Rd | 9 text-1.2.1/text/man/textFineTuneTask.Rd | 6 text-1.2.1/text/man/textModelLayers.Rd | 13 text-1.2.1/text/man/textPredict.Rd | 50 + text-1.2.1/text/man/textTopics.Rd | 3 text-1.2.1/text/man/textTopicsReduce.Rd |only text-1.2.1/text/man/textTopicsTree.Rd |only text-1.2.1/text/man/textTrainNPlot.Rd | 45 - text-1.2.1/text/man/textTrainRandomForest.Rd | 3 text-1.2.1/text/man/textTrainRegression.Rd | 9 text-1.2.1/text/man/textrpp_install.Rd | 9 text-1.2.1/text/tests/testthat/test_0_install_test.R | 32 text-1.2.1/text/tests/testthat/test_1_1_Analyses_flow.R |only text-1.2.1/text/tests/testthat/test_1_2_textEmbed.R |only text-1.2.1/text/tests/testthat/test_2_1_textTrainRegression.R |only text-1.2.1/text/tests/testthat/test_2_2_textTrainRandomForest.R |only text-1.2.1/text/tests/testthat/test_2_3_textTrain_strata.R |only text-1.2.1/text/tests/testthat/test_2_4_textTrainN.R |only text-1.2.1/text/tests/testthat/test_2_5_textPredict.R |only text-1.2.1/text/tests/testthat/test_4_textPlot.R | 19 text-1.2.1/text/tests/testthat/test_6_textFineTune.R |only text-1.2.1/text/tests/testthat/test_7_textTopics.R | 15 text-1.2.1/text/tests/testthat/test_zz_UNinstall_test.R |only text-1.2.1/text/tests/testthat/test_zzz_install_virtualenv_test.R |only text-1.2.1/text/vignettes/pre_trained_models.Rmd |only 64 files changed, 1637 insertions(+), 757 deletions(-)
Title: Topic Inference to Identify Tissue Architecture in Multiplexed
Images
Description: A novel spatial topic model to integrate both cell type and spatial information to identify the complex spatial tissue architecture on multiplexed tissue images without human intervention. The Package implements a collapsed Gibbs sampling algorithm for inference. 'SpaTopic' is scalable to large-scale image datasets without extracting neighborhood information for every single cell. For more details on the methodology, see <https://xiyupeng.github.io/SpaTopic/>.
Author: Xiyu Peng [aut, cre]
Maintainer: Xiyu Peng <pansypeng124@gmail.com>
Diff between SpaTopic versions 1.0.1 dated 2024-01-17 and 1.1.0 dated 2024-04-22
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 2 ++ R/Gibbs_sampler.R | 28 +++++++++++++++++++++++----- README.md | 40 ++++++++++++++++++++++++++++++---------- inst/doc/Intro_SpaTopic.Rmd | 2 +- inst/doc/Intro_SpaTopic.html | 28 +++++++++++++++++++++------- vignettes/Intro_SpaTopic.Rmd | 2 +- 8 files changed, 90 insertions(+), 36 deletions(-)
Title: Standard and Nonstandard Statistical Models and Methods for Test
Equating
Description: Contains functions to perform various models and
methods for test equating (Kolen and Brennan, 2014
<doi:10.1007/978-1-4939-0317-7> ; Gonzalez and Wiberg, 2017
<doi:10.1007/978-3-319-51824-4> ; von Davier et. al, 2004
<doi:10.1007/b97446>). It currently implements the traditional mean, linear
and equipercentile equating methods. Both IRT observed-score and true-score
equating are also supported, as well as the mean-mean, mean-sigma, Haebara
and Stocking-Lord IRT linking methods. It also supports newest methods such
that local equating, kernel equating (using Gaussian, logistic,
Epanechnikov, uniform and adaptive kernels) with presmoothing, and IRT
parameter linking methods based on asymmetric item characteristic functions.
Functions to obtain both standard error of equating (SEE) and standard error
of equating differences between two equating functions (SEED) are also
implemented for the kernel method of equating.
Author: Jorge Gonzalez [cre, aut],
Daniel Leon Acuna [ctb]
Maintainer: Jorge Gonzalez <jorge.gonzalez@mat.uc.cl>
Diff between SNSequate versions 1.3-4 dated 2022-12-20 and 1.3-5 dated 2024-04-22
DESCRIPTION | 35 MD5 | 30 NAMESPACE | 141 +- R/BB.smooth.R |only R/bandwidth.R | 652 +++++----- R/discrete.smooth.R |only R/epan.R | 22 R/irt.eq.R | 8 R/kefJG.R |only R/ker.eq.R | 2978 +++++++++++++++++++++++------------------------ R/kpmfeJG.R |only R/loglin.smooth.R | 903 +++++++------- build/partial.rdb |binary inst/CITATION | 24 man/BB.smooth.Rd |only man/SNSequate-package.Rd | 160 +- man/bandwidth.Rd | 4 man/discrete.smooth.Rd |only man/ker.eq.Rd | 6 19 files changed, 2510 insertions(+), 2453 deletions(-)
Title: Web Interface to 'R' Functions
Description: Web front end for your 'R' functions producing plots or tables.
If you have a function or set of related functions, you can make them
available over the internet through a web browser. This is the same
motivation as the 'shiny' package, but note that the development of
'shinylight' is not in any way linked to that of 'shiny' (beyond the use of
the 'httpuv' package). You might prefer 'shinylight' to 'shiny' if you want
a lighter weight deployment with easier horizontal scaling, or if you want
to develop your front end yourself in JavaScript and HTML just using
a lightweight remote procedure call interface to your R code on the
server.
Author: Pieter Vermeesch [aut],
Tim Band [aut, cre]
Maintainer: Tim Band <t.band@ucl.ac.uk>
Diff between shinylight versions 1.1.2 dated 2022-11-30 and 1.2 dated 2024-04-22
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/shinylight.R | 22 +++++++++------------- README.md | 3 +-- inst/www/js/dataentrygrid.min.js | 2 +- inst/www/js/shinylight-framework.js | 26 ++++++++++++++++++++++++-- inst/www/locales/en/framework.json | 4 ++++ 7 files changed, 50 insertions(+), 29 deletions(-)
Title: Technical Data Sets by Ruijter et al. (2013)
Description: The real-time quantitative polymerase chain reaction
(qPCR) technical data sets by Ruijter et al. (2013)
<doi:10.1016/j.ymeth.2012.08.011>: (i) the four-point 10-fold dilution
series; (ii) 380 replicates; and (iii) the competimer data set. These
three data sets can be used to benchmark qPCR methods. Original data set
is available at
<https://medischebiologie.nl/wp-content/uploads/2019/02/qpcrdatamethods.zip>.
This package fixes incorrect annotations in the original data sets.
Author: Ramiro Magno [aut, cre] ,
Pattern Institute [cph, fnd]
Maintainer: Ramiro Magno <rmagno@pattern.institute>
Diff between ruijter versions 0.1.2 dated 2023-02-08 and 0.1.3 dated 2024-04-22
.aspell |only DESCRIPTION | 23 ++++++++++++----------- MD5 | 16 ++++++++++------ NAMESPACE | 1 + NEWS.md |only R/ruijter-package.R |only README.md | 20 +++++++++++++++++--- build |only man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/ruijter-package.Rd |only 12 files changed, 40 insertions(+), 20 deletions(-)
Title: Biomarker Data Set by Vermeulen et al. (2009)
Description: The biomarker data set by Vermeulen et al. (2009)
<doi:10.1016/S1470-2045(09)70154-8> is provided. The data
source, however, is by Ruijter et al. (2013)
<doi:10.1016/j.ymeth.2012.08.011>. The original data set may
be downloaded from
<https://medischebiologie.nl/wp-content/uploads/2019/02/qpcrdatamethods.zip>.
This data set is for a real-time quantitative polymerase chain reaction
(PCR) experiment that comprises the raw fluorescence data of 24,576
amplification curves. This data set comprises 59 genes of interest and 5
reference genes. Each gene was assessed on 366 neuroblastoma complementary
DNA (cDNA) samples and on 18 standard dilution series samples (10-fold
5-point dilution series x 3 replicates + no template controls (NTC) x 3
replicates).
Author: Ramiro Magno [aut, cre] ,
Pattern Institute [cph, fnd]
Maintainer: Ramiro Magno <rmagno@pattern.institute>
Diff between vermeulen versions 0.1.1 dated 2022-11-10 and 0.1.2 dated 2024-04-22
.aspell |only DESCRIPTION | 22 +++++++++++----------- MD5 | 12 ++++++------ NEWS.md | 4 ++++ README.md | 36 ++++++++++++++++++------------------ build/partial.rdb |binary inst/WORDLIST | 17 ++++++----------- man/vermeulen-package.Rd | 6 +++--- 8 files changed, 48 insertions(+), 49 deletions(-)
Title: Real-Time PCR Data Sets by Rutledge et al. (2004)
Description: Real-time quantitative polymerase chain reaction (qPCR) data
by Rutledge et al. (2004) <doi:10.1093/nar/gnh177> in tidy format. The
data comprises a six-point, ten-fold dilution series, repeated in five
independent runs, for two different amplicons. In each run, each standard
concentration is replicated four times. For the original raw data file see
the Supplementary Data section:
<https://academic.oup.com/nar/article/32/22/e178/2375678#supplementary-data>.
Author: Ramiro Magno [aut, cre] ,
Pattern Institute [cph, fnd]
Maintainer: Ramiro Magno <rmagno@pattern.institute>
Diff between rutledge versions 0.1.0 dated 2023-02-27 and 0.1.1 dated 2024-04-22
rutledge-0.1.0/rutledge/R/utils-pipe.R |only rutledge-0.1.0/rutledge/man/pipe.Rd |only rutledge-0.1.1/rutledge/DESCRIPTION | 22 +++++----- rutledge-0.1.1/rutledge/MD5 | 15 +++--- rutledge-0.1.1/rutledge/NAMESPACE | 2 rutledge-0.1.1/rutledge/NEWS.md |only rutledge-0.1.1/rutledge/README.md | 15 ++++-- rutledge-0.1.1/rutledge/build/partial.rdb |binary rutledge-0.1.1/rutledge/man/figures/README-unnamed-chunk-3-1.png |binary rutledge-0.1.1/rutledge/man/rutledge-package.Rd | 6 +- 10 files changed, 31 insertions(+), 29 deletions(-)
Title: Retrieve Global River Gauge Data
Description: Provides access to global river gauge data from a variety of national-level river agencies. The package interfaces with the national-level agency websites to provide access to river gauge locations, river discharge, and river stage. Currently, the package is available for the following countries: Australia, Brazil, Canada, Chile, France, Japan, South Africa, the United Kingdom, and the United States.
Author: Ryan Riggs [aut, cre] ,
Simon Moulds [aut] ,
Michel Wortmann [aut] ,
Louise Slater [aut] ,
George Allen [aut]
Maintainer: Ryan Riggs <ryanriggs7@gmail.com>
Diff between RivRetrieve versions 0.1.4 dated 2024-03-02 and 0.1.5 dated 2024-04-22
DESCRIPTION | 10 ++++----- MD5 | 16 +++++++-------- NEWS.md | 4 +++ build/vignette.rds |binary inst/doc/my-vignette.html | 14 ++++++------- man/RivRetrieve-package.Rd | 2 - man/get_timeseries_id.Rd | 48 ++++++++++++++++++++++----------------------- man/make_bom_request.Rd | 44 ++++++++++++++++++++--------------------- tests/testthat.R | 24 +++++++++++----------- 9 files changed, 83 insertions(+), 79 deletions(-)
Title: Interface to 'Python'
Description: Interface to 'Python' modules, classes, and functions. When calling
into 'Python', R data types are automatically converted to their equivalent 'Python'
types. When values are returned from 'Python' to R they are converted back to R
types. Compatible with all versions of 'Python' >= 2.7.
Author: Tomasz Kalinowski [ctb, cre],
Kevin Ushey [aut],
JJ Allaire [aut],
RStudio [cph, fnd],
Yuan Tang [aut, cph] ,
Dirk Eddelbuettel [ctb, cph],
Bryan Lewis [ctb, cph],
Sigrid Keydana [ctb],
Ryan Hafen [ctb, cph],
Marcus Geelnard [ctb, cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between reticulate versions 1.36.0 dated 2024-04-15 and 1.36.1 dated 2024-04-22
DESCRIPTION | 6 - MD5 | 22 ++--- NEWS.md | 16 +++- R/conda.R | 45 ++++++++--- R/conversion.R | 6 - inst/doc/python_dependencies.Rmd | 113 ++++++++++++++--------------- inst/doc/python_dependencies.html | 137 ++++++++++++++++++------------------ inst/doc/python_primer.html | 28 +++---- man/conda-tools.Rd | 11 ++ src/python.cpp | 4 - tests/testthat/test-python-pandas.R | 26 ++++++ vignettes/python_dependencies.Rmd | 113 ++++++++++++++--------------- 12 files changed, 300 insertions(+), 227 deletions(-)
Title: Real-Time PCR Data Sets by Batsch et al. (2008)
Description: Real-time quantitative polymerase chain reaction (qPCR) data
sets by Batsch et al. (2008) <doi:10.1186/1471-2105-9-95>. This package
provides five data sets, one for each PCR target: (i) rat SLC6A14,
(ii) human SLC22A13, (iii) pig EMT, (iv) chicken ETT, and (v) human
GAPDH. Each data set comprises a five-point, four-fold dilution series.
For each concentration there are three replicates. Each amplification curve
is 45 cycles long. Original raw data file:
<https://static-content.springer.com/esm/art%3A10.1186%2F1471-2105-9-95/MediaObjects/12859_2007_2080_MOESM5_ESM.xls>.
Author: Ramiro Magno [aut, cre] ,
Pattern Institute [cph, fnd]
Maintainer: Ramiro Magno <rmagno@pattern.institute>
Diff between batsch versions 0.1.0 dated 2023-02-14 and 0.1.1 dated 2024-04-22
batsch-0.1.0/batsch/R/utils-pipe.R |only batsch-0.1.0/batsch/man/pipe.Rd |only batsch-0.1.1/batsch/DESCRIPTION | 16 +++---- batsch-0.1.1/batsch/MD5 | 23 +++++------ batsch-0.1.1/batsch/NAMESPACE | 2 batsch-0.1.1/batsch/NEWS.md |only batsch-0.1.1/batsch/README.md | 11 ++--- batsch-0.1.1/batsch/build/partial.rdb |binary batsch-0.1.1/batsch/man/batsch-package.Rd | 4 - batsch-0.1.1/batsch/man/figures/README-unnamed-chunk-2-1.png |binary batsch-0.1.1/batsch/man/figures/README-unnamed-chunk-3-1.png |binary batsch-0.1.1/batsch/man/figures/README-unnamed-chunk-4-1.png |binary batsch-0.1.1/batsch/man/figures/README-unnamed-chunk-5-1.png |binary batsch-0.1.1/batsch/man/figures/README-unnamed-chunk-6-1.png |binary 14 files changed, 27 insertions(+), 29 deletions(-)
Title: Exploratory Graph Analysis – a Framework for Estimating the
Number of Dimensions in Multivariate Data using Network
Psychometrics
Description: Implements the Exploratory Graph Analysis (EGA) framework for dimensionality
and psychometric assessment. EGA estimates the number of dimensions in
psychological data using network estimation methods and community detection
algorithms. A bootstrap method is provided to assess the stability of dimensions
and items. Fit is evaluated using the Entropy Fit family of indices. Unique
Variable Analysis evaluates the extent to which items are locally dependent (or
redundant). Network loadings provide similar information to factor loadings and
can be used to compute network scores. A bootstrap and permutation approach are
available to assess configural and metric invariance. Hierarchical structures
can be detected using Hierarchical EGA. Time series and intensive longitudinal
data can be analyzed using Dynamic EGA, supporting individual, group, and
population level assessments.
Author: Hudson Golino [aut, cre] ,
Alexander Christensen [aut] ,
Robert Moulder [ctb] ,
Luis E. Garrido [ctb] ,
Laura Jamison [ctb] ,
Dingjing Shi [ctb]
Maintainer: Hudson Golino <hfg9s@virginia.edu>
Diff between EGAnet versions 2.0.5 dated 2024-03-15 and 2.0.6 dated 2024-04-22
DESCRIPTION | 16 - MD5 | 30 +-- NEWS | 19 ++ R/EBICglasso.qgraph.R | 8 R/TMFG.R | 231 ++++++++++++------------ R/auto.correlate.R | 33 ++- R/bootEGA.R | 83 +++++--- R/helpers.R | 24 +- R/invariance.R | 53 +++-- R/itemStability.R | 427 ++++++++++++++++++++++++--------------------- R/net.loads.R | 67 ++----- R/network.predictability.R | 10 - man/TMFG.Rd | 6 man/invariance.Rd | 2 man/itemStability.Rd | 14 - man/net.loads.Rd | 7 16 files changed, 574 insertions(+), 456 deletions(-)
Title: Common Plots for Analysis
Description: Select data analysis plots, under a standardized calling interface implemented on top of 'ggplot2' and 'plotly'.
Plots of interest include: 'ROC', gain curve, scatter plot with marginal distributions,
conditioned scatter plot with marginal densities,
box and stem with matching theoretical distribution, and density with matching theoretical distribution.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between WVPlots versions 1.3.7 dated 2023-08-19 and 1.3.8 dated 2024-04-22
DESCRIPTION | 8 +- MD5 | 10 +-- NEWS.md | 5 + R/ScatterHist.R | 6 +- inst/doc/WVPlots_concept.html | 113 +++++++++++++++++++---------------------- inst/doc/WVPlots_examples.html | 29 +++++----- 6 files changed, 85 insertions(+), 86 deletions(-)
Title: Variable Selection in Partial Least Squares
Description: Interfaces and methods for variable selection in Partial Least
Squares. The methods include filter methods, wrapper methods and embedded
methods. Both regression and classification is supported.
Author: Kristian Hovde Liland [aut, cre]
,
Tahir Mehmood [ctb],
Solve Saeboe [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between plsVarSel versions 0.9.10 dated 2023-01-12 and 0.9.11 dated 2024-04-22
DESCRIPTION | 12 ++--- MD5 | 16 +++---- NAMESPACE | 9 +++- NEWS | 4 + R/T2.R | 7 ++- R/mvrV.R | 26 ++++++----- R/utilities.R | 127 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ README.md | 44 +++++++++++++++++++- inst/CITATION | 7 ++- 9 files changed, 220 insertions(+), 32 deletions(-)
Title: Analytics & Machine Learning Sidekick
Description: Auxiliary package for better/faster analytics, visualization, data mining, and machine
learning tasks. With a wide variety of family functions, like Machine Learning, Data Wrangling,
Exploratory, API, and Scrapper, it helps the analyst or data scientist to get quick and robust
results, without the need of repetitive coding or extensive R programming skills.
Author: Bernardo Lares [aut, cre]
Maintainer: Bernardo Lares <laresbernardo@gmail.com>
Diff between lares versions 5.2.5 dated 2024-01-22 and 5.2.7 dated 2024-04-22
DESCRIPTION | 6 - MD5 | 92 +++++++++++++-------------- R/chatgpt.R | 4 - R/correlations.R | 9 +- R/credentials.R | 2 R/currency.R | 2 R/dalex_explainers.R | 10 +-- R/dim_reduction.R | 4 - R/facebook.R | 6 - R/gemini.R | 2 R/lares.R | 2 R/mails.R | 2 R/maze.R | 6 - R/onehotencoding.R | 2 R/other_functions.R | 150 +++++++++++++++++++++++---------------------- R/robyn.R | 48 +++++++------- R/stocks.R | 10 +-- R/text_mining.R | 2 R/theme_lares.R | 18 +++-- R/tictoc.R | 4 - R/trees.R | 2 R/wordle.R | 2 R/wrangling.R | 100 +++++++++++++++++++----------- R/zzz.R | 2 man/categ_reducer.Rd | 2 man/corr_cross.Rd | 2 man/daily_stocks.Rd | 2 man/dalex_variable.Rd | 4 - man/etf_sector.Rd | 2 man/fb_accounts.Rd | 2 man/fb_ads.Rd | 2 man/fb_insights.Rd | 2 man/font_exists.Rd | 8 +- man/gemini_ask.Rd | 2 man/get_currency.Rd | 2 man/gpt_ask.Rd | 2 man/num_abbr.Rd | 14 +++- man/ohse.Rd | 2 man/reduce_pca.Rd | 2 man/reduce_tsne.Rd | 2 man/robyn_hypsbuilder.Rd | 14 ++-- man/robyn_modelselector.Rd | 4 - man/stocks_hist.Rd | 4 - man/theme_lares.Rd | 2 man/try_require.Rd | 2 man/weighted_value.Rd | 2 man/wordle.Rd | 2 47 files changed, 311 insertions(+), 258 deletions(-)
Title: Arrange 'Grobs' in Tables
Description: Tools to make it easier to work with "tables" of 'grobs'. The
'gtable' package defines a 'gtable' grob class that specifies a grid
along with a list of grobs and their placement in the grid. Further
the package makes it easy to manipulate and combine 'gtable' objects
so that complex compositions can be built up sequentially.
Author: Hadley Wickham [aut],
Thomas Lin Pedersen [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between gtable versions 0.3.4 dated 2023-08-21 and 0.3.5 dated 2024-04-22
DESCRIPTION | 44 +++++++++++++++-------------------- LICENSE | 2 - MD5 | 28 +++++++++++----------- NEWS.md | 2 + R/gtable.R | 2 - README.md | 44 +++++++++++++++++++---------------- build/vignette.rds |binary inst/doc/profiling.R | 2 - inst/doc/profiling.html | 17 +++++++++---- man/figures/lifecycle-superseded.svg | 2 - man/gtable-package.Rd | 3 -- man/gtable_col.Rd | 4 +-- man/gtable_matrix.Rd | 4 +-- man/gtable_row.Rd | 4 +-- man/gtable_spacer.Rd | 4 +-- 15 files changed, 84 insertions(+), 78 deletions(-)
Title: Bayesian Preference Learning with the Mallows Rank Model
Description: An implementation of the Bayesian version of the Mallows rank model
(Vitelli et al., Journal of Machine Learning Research, 2018 <https://jmlr.org/papers/v18/15-481.html>;
Crispino et al., Annals of Applied Statistics, 2019 <doi:10.1214/18-AOAS1203>;
Sorensen et al., R Journal, 2020 <doi:10.32614/RJ-2020-026>;
Stein, PhD Thesis, 2023 <https://eprints.lancs.ac.uk/id/eprint/195759>). Both Metropolis-Hastings
and sequential Monte Carlo algorithms for estimating the models are available. Cayley, footrule,
Hamming, Kendall, Spearman, and Ulam distances are supported in the models. The rank data to be
analyzed can be in the form of complete rankings, top-k rankings, partially missing rankings, as well
as consistent and inconsistent pairwise preferences. Several functions for plotting and studying the
posterior distributions of parameters are provided. The package also provides functions for estimating
the partition function (normalizing constant) of the Mallows rank mo [...truncated...]
Author: Oystein Sorensen [aut, cre] ,
Waldir Leoncio [aut],
Valeria Vitelli [aut] ,
Marta Crispino [aut],
Qinghua Liu [aut],
Cristina Mollica [aut],
Luca Tardella [aut],
Anja Stein [aut]
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>
Diff between BayesMallows versions 2.2.0 dated 2024-04-19 and 2.2.1 dated 2024-04-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ build/partial.rdb |binary tests/testthat/test-smc_update_correctness.R | 1 + 5 files changed, 12 insertions(+), 7 deletions(-)
Title: Import, Manipulate and Explore the Results of an 'Antares'
Simulation
Description: Import, manipulate and explore results generated by 'Antares', a
powerful open source software developed by RTE (Réseau de Transport d’Électricité) to simulate and study electric power systems
(more information about 'Antares' here : <https://antares-simulator.org/>).
Author: Tatiana Vargas [aut, cre],
Jalal-Edine ZAWAM [aut],
Frederic Breant [ctb],
Francois Guillem [aut],
Benoit Thieurmel [aut],
Titouan Robert [aut],
Victor Perrier [ctb],
Etienne Sanchez [ctb],
Assil Mansouri [ctb],
Clement Berthet [ctb],
Kamel Kemiha [c [...truncated...]
Maintainer: Tatiana Vargas <tatiana.vargas@rte-france.com>
Diff between antaresRead versions 2.6.0 dated 2023-08-30 and 2.6.1 dated 2024-04-22
antaresRead-2.6.0/antaresRead/man/aggregatate_mc_all_old.Rd |only antaresRead-2.6.1/antaresRead/DESCRIPTION | 13 - antaresRead-2.6.1/antaresRead/MD5 | 43 ++-- antaresRead-2.6.1/antaresRead/NEWS.md | 17 + antaresRead-2.6.1/antaresRead/R/API-methods.R | 21 +- antaresRead-2.6.1/antaresRead/R/aggregateResult.R | 18 - antaresRead-2.6.1/antaresRead/R/giveSize.R | 2 antaresRead-2.6.1/antaresRead/R/importOutput.R | 96 +++++++--- antaresRead-2.6.1/antaresRead/R/readAntaresClusters.R | 2 antaresRead-2.6.1/antaresRead/R/readClusterDesc.R | 50 +++-- antaresRead-2.6.1/antaresRead/R/readIniFile.R | 24 +- antaresRead-2.6.1/antaresRead/R/readInputClusters.R | 4 antaresRead-2.6.1/antaresRead/R/setSimulationPath.R | 9 antaresRead-2.6.1/antaresRead/R/utils_api.R | 32 ++- antaresRead-2.6.1/antaresRead/build/vignette.rds |binary antaresRead-2.6.1/antaresRead/inst/doc/antaresH5.Rmd | 1 antaresRead-2.6.1/antaresRead/inst/doc/antaresH5.html | 6 antaresRead-2.6.1/antaresRead/inst/doc/antaresRead.html | 4 antaresRead-2.6.1/antaresRead/man/API-methods.Rd | 23 +- antaresRead-2.6.1/antaresRead/man/aggregatate_mc_all.Rd | 6 antaresRead-2.6.1/antaresRead/tests/testthat/test-readAntares.R | 10 + antaresRead-2.6.1/antaresRead/tests/testthat/test-readClusterDesc.R | 40 +++- antaresRead-2.6.1/antaresRead/vignettes/antaresH5.Rmd | 1 23 files changed, 294 insertions(+), 128 deletions(-)
Title: Worldwide or Coordinates-Based Heat Maps
Description: Easily plot heat maps of the world, based on continuous or categorical data. Country labels can also be added to the map.
Author: Luigi Annicchiarico [cre, aut]
Maintainer: Luigi Annicchiarico <luigi.annic@gmail.com>
Diff between WorldMapR versions 0.1.0 dated 2024-02-13 and 0.1.1 dated 2024-04-22
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 3 +++ NEWS.md | 7 +++++++ R/geometries_data.R | 13 ++++++++++--- R/worldplot.R | 12 ++++++++++-- R/worldplotCat.R | 27 ++++++++++++++++++++++----- man/worldplotCat.Rd | 2 +- tests/testthat/testCat2.R | 24 ++++++++++++++++++++++++ 9 files changed, 89 insertions(+), 23 deletions(-)
Title: Download Data from Bank of Spain
Description: Tools to download data series from 'Banco de España' ('BdE')
on 'tibble' format. 'Banco de España' is the national central bank
and, within the framework of the Single Supervisory Mechanism ('SSM'),
the supervisor of the Spanish banking system along with the European
Central Bank. This package is in no way sponsored endorsed or
administered by 'Banco de España'.
Author: Diego H. Herrero [aut, cre, cph]
Maintainer: Diego H. Herrero <dev.dieghernan@gmail.com>
Diff between tidyBdE versions 0.3.5 dated 2024-01-29 and 0.3.6 dated 2024-04-22
DESCRIPTION | 10 - MD5 | 60 ++++----- NEWS.md | 227 ++++++++++++++++------------------- R/bde_check_access.R | 120 +++++++++--------- R/catalogs.R | 46 ++++--- R/indicators.R | 2 R/scales.R | 15 -- R/series.R | 13 +- R/theme_tidybde.R | 4 R/utils.R | 2 README.md | 13 -- build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/tidyBdE.Rmd | 9 - inst/doc/tidyBdE.html | 18 +- inst/schemaorg.json | 4 man/bde_catalog_load.Rd | 14 +- man/bde_catalog_search.Rd | 2 man/bde_catalog_update.Rd | 12 - man/bde_check_access.Rd | 2 man/bde_indicators.Rd | 2 man/bde_parse_dates.Rd | 2 man/bde_series_load.Rd | 13 +- man/figures/README-chart-1.png |binary man/figures/README-macroseries-1.png |binary man/scales_bde.Rd | 7 - man/theme_tidybde.Rd | 4 tests/testthat/test-series.R | 2 vignettes/chart-1.png |binary vignettes/macroseries-1.png |binary vignettes/tidyBdE.Rmd | 9 - 31 files changed, 314 insertions(+), 300 deletions(-)
Title: Simple Functions to Save Time and Memory
Description: Fast and memory-efficient (or 'cheap') tools to facilitate
efficient programming, saving time and memory. It aims to provide
'cheaper' alternatives to common base R functions, as well as some
additional functions.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between cheapr versions 0.8.0 dated 2024-04-12 and 0.9.0 dated 2024-04-22
DESCRIPTION | 6 - MD5 | 38 ++++---- NAMESPACE | 1 NEWS.md | 8 + R/cpp11.R | 8 + R/lag.R |only R/sset.R | 14 --- README.md | 179 +++++++++++++++++++++++++++-------------- man/lag_.Rd |only src/attrs.cpp | 2 src/cheapr_cpp.h | 22 +---- src/cpp11.cpp | 16 +++ src/gcd.cpp | 2 src/lag.cpp |only src/nas.cpp | 2 src/sequences.cpp | 2 src/set_math.cpp | 58 ++++++------- src/sset.cpp | 2 src/utils.cpp | 7 + src/which.cpp | 2 tests/testthat/test-lag.R |only tests/testthat/test-set_math.R | 172 +++++++++++++++++++-------------------- 22 files changed, 302 insertions(+), 239 deletions(-)
Title: Genome Interval Arithmetic
Description: Read and manipulate genome intervals and signals. Provides
functionality similar to command-line tool suites within R, enabling
interactive analysis and visualization of genome-scale data. Riemondy
et al. (2017) <doi:10.12688/f1000research.11997.1>.
Author: Jay Hesselberth [aut] ,
Kent Riemondy [aut, cre] ,
RNA Bioscience Initiative [fnd, cph]
Maintainer: Kent Riemondy <kent.riemondy@cuanschutz.edu>
Diff between valr versions 0.8.0 dated 2024-04-04 and 0.8.1 dated 2024-04-22
DESCRIPTION | 7 ++++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/doc/valr.html | 4 ++-- tests/testthat.R | 1 - 5 files changed, 14 insertions(+), 10 deletions(-)
Title: Asymptotic Timing
Description: Computing and visualizing comparative
asymptotic timings of different algorithms and code versions.
Also includes functionality for comparing empirical timings with
expected references such as linear or quadratic,
<https://en.wikipedia.org/wiki/Asymptotic_computational_complexity>
Also includes functionality for measuring asymptotic memory and other
quantities.
Author: Toby Hocking [aut, cre]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between atime versions 2024.4.12 dated 2024-04-13 and 2024.4.17 dated 2024-04-22
DESCRIPTION | 6 MD5 | 78 +- NAMESPACE | 38 - NEWS | 203 +++---- R/atime.R | 475 +++++++++-------- R/predict.R | 233 ++++---- R/references.R | 355 ++++++------ R/versions.R | 745 +++++++++++++-------------- build/vignette.rds |binary inst/doc/Custom_Plots.R | 144 ++--- inst/doc/Custom_Plots.Rmd | 202 +++---- inst/doc/Custom_Plots.html | 506 +++++++++--------- inst/doc/Custom_References.R | 114 ++-- inst/doc/Custom_References.Rmd | 248 ++++----- inst/doc/Custom_References.html | 545 +++++++++---------- inst/doc/Custom_Units.R | 123 ++-- inst/doc/Custom_Units.Rmd | 270 +++++---- inst/doc/Custom_Units.html | 578 +++++++++++---------- inst/doc/cum_median.R | 62 +- inst/doc/cum_median.Rmd | 106 +-- inst/doc/cum_median.html | 406 +++++++------- inst/doc/regex.R | 128 ++-- inst/doc/regex.Rmd | 194 +++---- inst/doc/regex.html | 523 +++++++++---------- man/atime.Rd | 135 ++-- man/atime_grid.Rd | 172 +++--- man/atime_pkg.Rd | 116 ++-- man/atime_versions.Rd | 172 +++--- man/atime_versions_exprs.Rd | 174 +++--- man/atime_versions_remove.Rd | 26 man/glob_find_replace.Rd | 38 - man/references_best.Rd | 86 +-- tests/testthat.R | 2 tests/testthat/test-CRAN.R | 770 ++++++++++++++-------------- vignettes/Custom_Plots.Rmd | 202 +++---- vignettes/Custom_References.Rmd | 248 ++++----- vignettes/Custom_Units.Rmd | 270 +++++---- vignettes/binseg.html |only vignettes/compare-data.table-tidyverse.html |only vignettes/cum_median.Rmd | 106 +-- vignettes/regex.Rmd | 194 +++---- 41 files changed, 4628 insertions(+), 4365 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-16 0.3.0
2017-02-19 0.2.1
2017-01-01 0.1.1
Title: Create Native 'Excel' Charts and Work with Microsoft 'Excel'
Files
Description: An R interface to the 'OpenPyXL' 'Python' library to create
native 'Excel' charts and work with Microsoft 'Excel' files.
Author: Felix Luginbuhl [aut, cre, cph]
,
Eric Gazoni [ctb, cph] ),
Charlie Clark [ctb, cph] ),
openpyxl authors [ctb, cph] )
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between xlcharts versions 0.0.1 dated 2024-04-18 and 0.0.2 dated 2024-04-22
DESCRIPTION | 10 ++++++---- MD5 | 6 ++++-- NEWS.md |only README.md | 22 +++++++++++++++++----- man/figures/logo.png |only 5 files changed, 27 insertions(+), 11 deletions(-)
Title: Statistical Inference for Box-Cox Based Receiver Operating
Characteristic Curves
Description: Generation of Box-Cox based ROC curves and several aspects of inferences and hypothesis testing. Can be used when inferences for one biomarker (Bantis LE, Nakas CT, Reiser B. (2018)<doi:10.1002/bimj.201700107>) are of interest or when comparisons of two correlated biomarkers (Bantis LE, Nakas CT, Reiser B. (2021)<doi:10.1002/bimj.202000128>) are of interest. Provides inferences and comparisons around the AUC, the Youden index, the sensitivity at a given specificity level (and vice versa), the optimal operating point of the ROC curve (in the Youden sense), and the Youden based cutoff.
Author: Leonidas Bantis [aut],
Benjamin Brewer [cre, ctb],
Christos Nakas [ctb],
Benjamin Reiser [ctb]
Maintainer: Benjamin Brewer <tennisbenj@gmail.com>
Diff between rocbc versions 3.0.0 dated 2024-03-25 and 3.1.0 dated 2024-04-22
DESCRIPTION | 8 MD5 | 18 R/threerocs.R | 6 R/threerocs2.R |only build/vignette.rds |binary inst/doc/documentation_rocbc.R | 256 ++++++-- inst/doc/documentation_rocbc.Rmd | 278 +++++++- inst/doc/documentation_rocbc.html | 1206 +++++++++++++++++++++----------------- man/threerocs.Rd | 4 man/threerocs2.Rd |only vignettes/documentation_rocbc.Rmd | 278 +++++++- 11 files changed, 1386 insertions(+), 668 deletions(-)
Title: Adaptive Parallel Tempering for 'NIMBLE'
Description: Functions for adaptive parallel tempering (APT) with NIMBLE models. Adapted from 'Lacki' & 'Miasojedow' (2016) <DOI:10.1007/s11222-015-9579-0> and 'Miasojedow, Moulines and Vihola' (2013) <DOI:10.1080/10618600.2013.778779>.
Author: David Pleydell [aut, cre, cph] ,
Daniel Turek [cph] ,
Perry de Valpine [cph] ,
Christopher Paciorek [cph] ,
Nick Michaud [cph]
Maintainer: David Pleydell <david.pleydell@inrae.fr>
Diff between nimbleAPT versions 1.0.4 dated 2021-11-22 and 1.0.5 dated 2024-04-22
DESCRIPTION | 10 - MD5 | 20 +-- R/APT_functions.R | 52 +++++---- R/nimbleAPT-package.r | 8 - build/vignette.rds |binary inst/CITATION | 2 inst/NEWS | 7 + inst/doc/nimbleAPT-vignette.R | 2 inst/doc/nimbleAPT-vignette.html | 203 ++++++++++++++++++++------------------- man/buildAPT.Rd | 7 + man/nimbleAPT.Rd | 2 11 files changed, 173 insertions(+), 140 deletions(-)
Title: Evidential Regression
Description: An implementation of the 'Evidential Neural Network for Regression' model recently introduced in Denoeux (2023) <doi:10.1109/TFUZZ.2023.3268200>. In this model, prediction uncertainty is quantified by Gaussian random fuzzy numbers as introduced in Denoeux (2023) <doi:10.1016/j.fss.2022.06.004>. The package contains functions for training the network, tuning hyperparameters by cross-validation or the hold-out method, and making predictions. It also contains utilities for making calculations with Gaussian random fuzzy numbers (such as, e.g., computing the degrees of belief and plausibility of an interval, or combining Gaussian random fuzzy numbers).
Author: Thierry Denoeux [aut, cre]
Maintainer: Thierry Denoeux <tdenoeux@utc.fr>
Diff between evreg versions 1.0.3 dated 2023-11-09 and 1.0.4 dated 2024-04-22
DESCRIPTION | 10 +++++----- MD5 | 32 ++++++++++++++++---------------- NEWS | 7 +++++++ R/ENNreg.R | 9 +++------ R/ENNreg_cv.R | 2 +- R/ENNreg_holdout.R | 2 +- R/ENNreg_init.R | 2 +- R/combination_GRFN.R | 2 +- R/evreg.R | 4 ++-- inst/doc/Introduction.R | 14 +++++++------- inst/doc/Introduction.html | 37 +++++++++++++++++++------------------ man/ENNreg.Rd | 2 +- man/ENNreg_cv.Rd | 2 +- man/ENNreg_holdout.Rd | 2 +- man/combination_GRFN.Rd | 2 +- man/evreg.Rd | 5 +++-- vignettes/tdenoeux.bib | 7 ++++--- 17 files changed, 74 insertions(+), 67 deletions(-)
Title: Feature Stores for the 'diseasy' Framework
Description: Simple feature stores and tools for creating personalised feature stores.
'diseasystore' powers feature stores which can automatically link and aggregate features to a given stratification
level. These feature stores are automatically time-versioned (powered by the 'SCDB' package) and allows you to easily
and dynamically compute features as part of your continuous integration.
Author: Rasmus Skytte Randloev [aut, cre]
,
Marcus Munch Gruenewald [ctb] ,
Kaare Graesboell [rev] ,
Kasper Schou Telkamp [rev] ,
Lasse Engbo Christiansen [rev]
,
Sofia Myrup Otero [rev],
Statens Serum Institut, SSI [cph, fnd]
Maintainer: Rasmus Skytte Randloev <rske@ssi.dk>
Diff between diseasystore versions 0.2.0 dated 2024-03-20 and 0.2.1 dated 2024-04-22
DESCRIPTION | 12 MD5 | 38 NAMESPACE | 1 NEWS.md | 4 R/0_locks.R | 8 R/DiseasystoreBase.R | 96 - R/drop_diseasystore.R | 169 --- R/test_diseasystore.R | 978 +++++++++----------- R/truncate_interlace.R | 7 README.md | 2 build/vignette.rds |binary inst/doc/diseasystore-ecdc-respiratory-viruses.Rmd | 5 inst/doc/diseasystore-ecdc-respiratory-viruses.html | 9 inst/doc/diseasystore-google-covid-19.html | 4 inst/doc/diseasystore.html | 81 + tests/testthat/helper-setup.R | 10 tests/testthat/test-0_linters.R | 8 tests/testthat/test-DiseasystoreBase.R | 525 +++++----- tests/testthat/test-drop_diseasystore.R | 79 - vignettes/diseasystore-ecdc-respiratory-viruses.Rmd | 5 20 files changed, 944 insertions(+), 1097 deletions(-)
More information about ConfidenceEllipse at CRAN
Permanent link
Title: Sparse-Group Boosting
Description: Sparse-group boosting to be used in conjunction with the 'mboost' for modeling grouped data.
Applicable to all sparse-group lasso type problems where within-group and between-group sparsity is desired.
Interprets and visualizes individual variables and groups.
Author: Fabian Obster [aut, cre, cph]
Maintainer: Fabian Obster <fabian.obster@unibw.de>
Diff between sgboost versions 0.1.0 dated 2024-04-11 and 0.1.2 dated 2024-04-22
DESCRIPTION | 6 MD5 | 14 - NEWS.md | 2 inst/doc/sgboost.R | 3 inst/doc/sgboost.Rmd | 39 ++--- inst/doc/sgboost.html | 302 ++++++++++++++++++++--------------------- tests/testthat/test-get_coef.R | 12 - vignettes/sgboost.Rmd | 39 ++--- 8 files changed, 213 insertions(+), 204 deletions(-)
Title: The Rainfall-Runoff Erosivity Factor
Description: Determination of rainfall-runoff erosivity factor.
Author: Dione Pereira Cardoso [aut, cre], Edilson Marcelino Silva [aut], Paulo Cesar Ossani [aut], Marx Leandro Naves Silva [ctb],
Joel Augusto Muniz [ctb], Daniel Furtado Ferreira [ctb], Junior Cesar Avanzi [ctb]
Maintainer: Dione Pereira Cardoso <cardoso.dione@gmail.com>
Diff between RainfallErosivityFactor versions 0.1.0 dated 2018-11-18 and 1.0.0 dated 2024-04-22
DESCRIPTION | 8 - MD5 | 6 R/RainfallErosivityFactor.R | 291 ++++++++++++++++++++++------------------- man/RainfallErosivityFactor.Rd | 7 4 files changed, 168 insertions(+), 144 deletions(-)
More information about RainfallErosivityFactor at CRAN
Permanent link
Title: Power and Sample Size Calculation for Non-Proportional Hazards
and Beyond
Description: Performs power and sample size calculation for non-proportional hazards model using the Fleming-Harrington family of weighted log-rank tests. The sequentially calculated log-rank test score statistics are assumed to have independent increments as characterized in Anastasios A. Tsiatis (1982) <doi:10.1080/01621459.1982.10477898>. The mean and variance of log-rank test score statistics are calculated based on Kaifeng Lu (2021) <doi:10.1002/pst.2069>. The boundary crossing probabilities are calculated using the recursive integration algorithm described in Christopher Jennison and Bruce W. Turnbull (2000, ISBN:0849303168). The package can also be used for continuous, binary, and count data. For continuous data, it can handle missing data through mixed-model for repeated measures (MMRM). In crossover designs, it can estimate direct treatment effects while accounting for carryover effects. For binary data, it can design Simon's 2-stage, modified toxicity probability-2 (mTPI-2), a [...truncated...]
Author: Kaifeng Lu
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between lrstat versions 0.2.4 dated 2024-03-19 and 0.2.5 dated 2024-04-22
lrstat-0.2.4/lrstat/man/findInterval2.Rd |only lrstat-0.2.5/lrstat/DESCRIPTION | 12 lrstat-0.2.5/lrstat/MD5 | 222 - lrstat-0.2.5/lrstat/NAMESPACE | 22 lrstat-0.2.5/lrstat/NEWS.md | 19 lrstat-0.2.5/lrstat/R/RcppExports.R | 937 ++++++ lrstat-0.2.5/lrstat/R/data.R |only lrstat-0.2.5/lrstat/R/getDesignMeans.R | 1638 ++++++++--- lrstat-0.2.5/lrstat/R/getDesignProportions.R | 108 lrstat-0.2.5/lrstat/R/getDesignSurvivals.R |only lrstat-0.2.5/lrstat/R/lrstat-package.R | 286 - lrstat-0.2.5/lrstat/R/parameter_descriptions.R | 3 lrstat-0.2.5/lrstat/R/prints.R | 480 +++ lrstat-0.2.5/lrstat/R/wrappers.R | 2010 +++++++------- lrstat-0.2.5/lrstat/data |only lrstat-0.2.5/lrstat/man/findInterval3.Rd |only lrstat-0.2.5/lrstat/man/fquantile.Rd |only lrstat-0.2.5/lrstat/man/getDesign.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignANOVA.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignANOVAContrast.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignAgreement.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignEquiv.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignFisherExact.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignLogistic.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignMeanDiff.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignMeanDiffCarryover.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignMeanDiffEquiv.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignMeanDiffMMRM.Rd | 248 + lrstat-0.2.5/lrstat/man/getDesignMeanDiffXO.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignMeanDiffXOEquiv.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignMeanRatio.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignMeanRatioEquiv.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignMeanRatioXO.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignMeanRatioXOEquiv.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignOddsRatio.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignOddsRatioEquiv.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignOneMean.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignOneMultinom.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignOneProportion.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignOneRateExact.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignOneSlope.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignOrderedBinom.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignPairedMeanDiff.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignPairedMeanDiffEquiv.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignPairedMeanRatio.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignPairedMeanRatioEquiv.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignPairedPropMcNemar.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignRepeatedANOVA.Rd | 4 lrstat-0.2.5/lrstat/man/getDesignRepeatedANOVAContrast.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignRiskDiff.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignRiskDiffEquiv.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignRiskDiffExact.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignRiskDiffExactEquiv.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignRiskRatio.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignRiskRatioEquiv.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignRiskRatioExact.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignRiskRatioExactEquiv.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignRiskRatioFM.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignSlopeDiff.Rd | 5 lrstat-0.2.5/lrstat/man/getDesignSlopeDiffMMRM.Rd | 273 + lrstat-0.2.5/lrstat/man/getDesignTwoMultinom.Rd | 6 lrstat-0.2.5/lrstat/man/getDesignTwoOrdinal.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignTwoWayANOVA.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignUnorderedBinom.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignUnorderedMultinom.Rd | 2 lrstat-0.2.5/lrstat/man/getDesignWilcoxon.Rd | 5 lrstat-0.2.5/lrstat/man/getNeventsFromHazardRatio.Rd | 3 lrstat-0.2.5/lrstat/man/kmdiff.Rd |only lrstat-0.2.5/lrstat/man/kmest.Rd |only lrstat-0.2.5/lrstat/man/kmpower.Rd | 15 lrstat-0.2.5/lrstat/man/kmpower1s.Rd | 3 lrstat-0.2.5/lrstat/man/kmsamplesize.Rd | 7 lrstat-0.2.5/lrstat/man/kmsamplesize1s.Rd | 3 lrstat-0.2.5/lrstat/man/kmstat.Rd | 5 lrstat-0.2.5/lrstat/man/lrpower.Rd | 3 lrstat-0.2.5/lrstat/man/lrsamplesize.Rd | 3 lrstat-0.2.5/lrstat/man/lrsim.Rd | 3 lrstat-0.2.5/lrstat/man/lrtest.Rd |only lrstat-0.2.5/lrstat/man/nbpower.Rd | 3 lrstat-0.2.5/lrstat/man/nbpower1s.Rd | 3 lrstat-0.2.5/lrstat/man/nbsamplesize.Rd | 3 lrstat-0.2.5/lrstat/man/nbsamplesize1s.Rd | 3 lrstat-0.2.5/lrstat/man/param_futilityBounds.Rd | 3 lrstat-0.2.5/lrstat/man/powerRiskDiffExact.Rd | 8 lrstat-0.2.5/lrstat/man/powerRiskDiffExactEquiv.Rd | 10 lrstat-0.2.5/lrstat/man/powerRiskRatioExact.Rd | 8 lrstat-0.2.5/lrstat/man/powerRiskRatioExactEquiv.Rd | 10 lrstat-0.2.5/lrstat/man/ptpwexp.Rd | 14 lrstat-0.2.5/lrstat/man/pwexpcuts.Rd |only lrstat-0.2.5/lrstat/man/pwexploglik.Rd |only lrstat-0.2.5/lrstat/man/qtpwexp.Rd | 14 lrstat-0.2.5/lrstat/man/rawdata.Rd |only lrstat-0.2.5/lrstat/man/remlOddsRatio.Rd | 8 lrstat-0.2.5/lrstat/man/remlRateDiff.Rd | 8 lrstat-0.2.5/lrstat/man/remlRateRatio.Rd | 8 lrstat-0.2.5/lrstat/man/remlRiskDiff.Rd | 8 lrstat-0.2.5/lrstat/man/remlRiskRatio.Rd | 8 lrstat-0.2.5/lrstat/man/riskDiffExactCI.Rd |only lrstat-0.2.5/lrstat/man/riskDiffExactPValue.Rd |only lrstat-0.2.5/lrstat/man/riskRatioExactCI.Rd |only lrstat-0.2.5/lrstat/man/riskRatioExactPValue.Rd |only lrstat-0.2.5/lrstat/man/rmdiff.Rd |only lrstat-0.2.5/lrstat/man/rmest.Rd |only lrstat-0.2.5/lrstat/man/rmpower.Rd | 13 lrstat-0.2.5/lrstat/man/rmpower1s.Rd | 3 lrstat-0.2.5/lrstat/man/rmsamplesize.Rd | 7 lrstat-0.2.5/lrstat/man/rmsamplesize1s.Rd | 3 lrstat-0.2.5/lrstat/man/rmstat.Rd | 6 lrstat-0.2.5/lrstat/man/rmstat1.Rd | 2 lrstat-0.2.5/lrstat/man/simonBayesAnalysis.Rd |only lrstat-0.2.5/lrstat/man/simonBayesSim.Rd |only lrstat-0.2.5/lrstat/man/zstatOddsRatio.Rd |only lrstat-0.2.5/lrstat/man/zstatRateDiff.Rd |only lrstat-0.2.5/lrstat/man/zstatRateRatio.Rd |only lrstat-0.2.5/lrstat/man/zstatRiskDiff.Rd |only lrstat-0.2.5/lrstat/man/zstatRiskRatio.Rd |only lrstat-0.2.5/lrstat/src/RcppExports.cpp | 311 +- lrstat-0.2.5/lrstat/src/basket.cpp |only lrstat-0.2.5/lrstat/src/kmstat.cpp | 1491 ++++++++++ lrstat-0.2.5/lrstat/src/lrsim.cpp | 106 lrstat-0.2.5/lrstat/src/lrstat.cpp | 652 ++++ lrstat-0.2.5/lrstat/src/misc.cpp | 1262 +++++++- lrstat-0.2.5/lrstat/src/rmstat.cpp | 1315 +++++++++ lrstat-0.2.5/lrstat/src/utilities.cpp | 158 - lrstat-0.2.5/lrstat/src/utilities.h | 19 125 files changed, 9456 insertions(+), 2465 deletions(-)
Title: Effective Reproduction Number Estimation
Description: Estimate the effective reproduction number from wastewater
and clinical data sources.
Author: David Champredon [aut, cre] ,
Warsame Yusuf [aut] ,
Irena Papst [aut]
Maintainer: David Champredon <david.champredon@canada.ca>
Diff between ern versions 1.3.1 dated 2024-01-29 and 2.0.0 dated 2024-04-22
ern-1.3.1/ern/data/cl.input.rda |only ern-1.3.1/ern/data/ww.input.rda |only ern-1.3.1/ern/inst/doc/distributions.R |only ern-1.3.1/ern/inst/doc/distributions.Rmd |only ern-1.3.1/ern/inst/doc/distributions.html |only ern-1.3.1/ern/man/cl.input.Rd |only ern-1.3.1/ern/man/def_dist_fecal_shedding.Rd |only ern-1.3.1/ern/man/def_dist_generation_interval.Rd |only ern-1.3.1/ern/man/def_dist_incubation_period.Rd |only ern-1.3.1/ern/man/def_dist_reporting_delay.Rd |only ern-1.3.1/ern/man/def_dist_reporting_fraction.Rd |only ern-1.3.1/ern/man/ww.input.Rd |only ern-1.3.1/ern/tests/testthat/setup-cl.input.R |only ern-1.3.1/ern/vignettes/distributions.Rmd |only ern-2.0.0/ern/DESCRIPTION | 10 ern-2.0.0/ern/MD5 | 120 +++---- ern-2.0.0/ern/NAMESPACE | 6 ern-2.0.0/ern/R/agg_to_daily.R | 90 +++-- ern-2.0.0/ern/R/check_args.R | 44 +- ern-2.0.0/ern/R/data.R | 28 + ern-2.0.0/ern/R/distributions.R | 316 ++++---------------- ern-2.0.0/ern/R/estimate_R_cl.R | 333 ++++++++++++++-------- ern-2.0.0/ern/R/estimate_R_ww.R | 39 ++ ern-2.0.0/ern/R/get_use_dates.R | 6 ern-2.0.0/ern/R/globals.R | 3 ern-2.0.0/ern/R/incidence_to_R.R | 2 ern-2.0.0/ern/R/linear_int_daily.R |only ern-2.0.0/ern/R/mcmcdiag.R |only ern-2.0.0/ern/R/plot.R | 215 +++++++++++--- ern-2.0.0/ern/README.md | 13 ern-2.0.0/ern/build/vignette.rds |binary ern-2.0.0/ern/data/cl.data.rda |only ern-2.0.0/ern/data/ww.data.rda |only ern-2.0.0/ern/inst/doc/est-rt.R | 67 +++- ern-2.0.0/ern/inst/doc/est-rt.Rmd | 79 +++-- ern-2.0.0/ern/inst/doc/est-rt.html | 188 ++++++------ ern-2.0.0/ern/man/agg_to_daily.Rd | 61 ++-- ern-2.0.0/ern/man/attach_t_agg.Rd | 16 - ern-2.0.0/ern/man/check_cl.input_format.Rd | 4 ern-2.0.0/ern/man/check_dist.Rd | 2 ern-2.0.0/ern/man/check_prm.daily.Rd | 4 ern-2.0.0/ern/man/cl.data.Rd |only ern-2.0.0/ern/man/def_dist.Rd |only ern-2.0.0/ern/man/draw_from_gamma.Rd | 2 ern-2.0.0/ern/man/estimate_R_cl.Rd | 148 ++++++--- ern-2.0.0/ern/man/estimate_R_cl_rep.Rd | 8 ern-2.0.0/ern/man/estimate_R_cl_single.Rd | 8 ern-2.0.0/ern/man/estimate_R_ww.Rd | 30 + ern-2.0.0/ern/man/extract_mcmc_values.Rd |only ern-2.0.0/ern/man/fit_jags_aggreg.Rd | 12 ern-2.0.0/ern/man/get_discrete_dist.Rd | 18 + ern-2.0.0/ern/man/get_use_dates.Rd | 4 ern-2.0.0/ern/man/inc2R_one_iter.Rd | 4 ern-2.0.0/ern/man/incidence_to_R.Rd | 2 ern-2.0.0/ern/man/linear_int_daily.Rd |only ern-2.0.0/ern/man/plot_diagnostic_cl.Rd | 128 ++++++-- ern-2.0.0/ern/man/plot_diagnostic_ww.Rd | 32 +- ern-2.0.0/ern/man/plot_dist.Rd | 9 ern-2.0.0/ern/man/plot_gelman_rubin.Rd |only ern-2.0.0/ern/man/plot_traces.Rd |only ern-2.0.0/ern/man/sample_a_dist.Rd | 4 ern-2.0.0/ern/man/smooth_cl.Rd | 12 ern-2.0.0/ern/man/smooth_ww.Rd | 4 ern-2.0.0/ern/man/ww.data.Rd |only ern-2.0.0/ern/tests/testthat/setup-cl.data.R |only ern-2.0.0/ern/tests/testthat/setup-dist.R | 46 ++- ern-2.0.0/ern/tests/testthat/setup-prm.R | 6 ern-2.0.0/ern/tests/testthat/test-agg_to_daily.R | 85 +++-- ern-2.0.0/ern/tests/testthat/test-check_args.R | 39 +- ern-2.0.0/ern/tests/testthat/test-distributions.R | 53 +-- ern-2.0.0/ern/tests/testthat/test-estimate_R_cl.R | 50 ++- ern-2.0.0/ern/tests/testthat/test-get_use_dates.R | 8 ern-2.0.0/ern/tests/testthat/test-plot.R | 83 ++--- ern-2.0.0/ern/vignettes/est-rt.Rmd | 79 +++-- 74 files changed, 1513 insertions(+), 1007 deletions(-)
Title: Elegant Tools for Processing and Visualization of Lipidomics
Data
Description: An elegant tool for processing and visualizing lipidomics data generated by mass spectrometry. 'LipidomicsR' simplifies channel and replicate handling while providing thorough lipid species annotation. Its visualization capabilities encompass principal components analysis plots, heatmaps, volcano plots, and radar plots, enabling concise data summarization and quality assessment. Additionally, it can generate bar plots and line plots to visualize the abundance of each lipid species.
Author: Mingshi Li [aut, com],
Hengyu Zhu [aut, cre]
Maintainer: Hengyu Zhu <hengyu.21@intl.zju.edu.cn>
Diff between LipidomicsR versions 0.1.6 dated 2024-03-16 and 0.3.6 dated 2024-04-22
LipidomicsR-0.1.6/LipidomicsR/R/lineplot.R |only LipidomicsR-0.1.6/LipidomicsR/man/cleanXpert.Rd |only LipidomicsR-0.1.6/LipidomicsR/man/paramWizard.Rd |only LipidomicsR-0.3.6/LipidomicsR/DESCRIPTION | 16 LipidomicsR-0.3.6/LipidomicsR/LICENSE | 4 LipidomicsR-0.3.6/LipidomicsR/MD5 | 70 LipidomicsR-0.3.6/LipidomicsR/NAMESPACE | 128 - LipidomicsR-0.3.6/LipidomicsR/R/abundance.R | 187 ++ LipidomicsR-0.3.6/LipidomicsR/R/channel_cleaner.R |only LipidomicsR-0.3.6/LipidomicsR/R/data_cleaner.R | 732 +++------- LipidomicsR-0.3.6/LipidomicsR/R/delRep.R | 123 + LipidomicsR-0.3.6/LipidomicsR/R/extract.R | 160 +- LipidomicsR-0.3.6/LipidomicsR/R/heatmap.R | 69 LipidomicsR-0.3.6/LipidomicsR/R/importer_group.R |only LipidomicsR-0.3.6/LipidomicsR/R/qc.R | 583 +++---- LipidomicsR-0.3.6/LipidomicsR/R/rsd_del.R |only LipidomicsR-0.3.6/LipidomicsR/R/volcano_master.R | 45 LipidomicsR-0.3.6/LipidomicsR/README.md |only LipidomicsR-0.3.6/LipidomicsR/data |only LipidomicsR-0.3.6/LipidomicsR/man/QCplot.Rd | 10 LipidomicsR-0.3.6/LipidomicsR/man/absolute.calculator.Rd | 4 LipidomicsR-0.3.6/LipidomicsR/man/abundance.lineplot.Rd | 28 LipidomicsR-0.3.6/LipidomicsR/man/abundance.signif.Rd | 3 LipidomicsR-0.3.6/LipidomicsR/man/abundance.summary.Rd | 3 LipidomicsR-0.3.6/LipidomicsR/man/channel.delete.Rd | 13 LipidomicsR-0.3.6/LipidomicsR/man/delRep.Rd | 13 LipidomicsR-0.3.6/LipidomicsR/man/groupXpert.Rd |only LipidomicsR-0.3.6/LipidomicsR/man/heatmap.Rd | 18 LipidomicsR-0.3.6/LipidomicsR/man/importer.Rd | 4 LipidomicsR-0.3.6/LipidomicsR/man/lEa.Rd | 9 LipidomicsR-0.3.6/LipidomicsR/man/lEr.Rd | 2 LipidomicsR-0.3.6/LipidomicsR/man/nor.absolute.Rd | 6 LipidomicsR-0.3.6/LipidomicsR/man/nor.relative.Rd | 6 LipidomicsR-0.3.6/LipidomicsR/man/noridx.Rd | 17 LipidomicsR-0.3.6/LipidomicsR/man/normalization_calculator.Rd | 57 LipidomicsR-0.3.6/LipidomicsR/man/percent.calculator.Rd | 12 LipidomicsR-0.3.6/LipidomicsR/man/relative_calculator.Rd | 4 LipidomicsR-0.3.6/LipidomicsR/man/rsd_calculator.Rd |only LipidomicsR-0.3.6/LipidomicsR/man/sepclass.Rd | 7 LipidomicsR-0.3.6/LipidomicsR/man/toGroup.calculator.Rd |only LipidomicsR-0.3.6/LipidomicsR/man/total.abundance.Rd |only LipidomicsR-0.3.6/LipidomicsR/man/volcano.Rd | 9 42 files changed, 1215 insertions(+), 1127 deletions(-)
Title: Core Tools for Packages in the 'fable' Framework
Description: Provides tools, helpers and data structures for
developing models and time series functions for 'fable' and extension
packages. These tools support a consistent and tidy interface for time
series modelling and analysis.
Author: Mitchell O'Hara-Wild [aut, cre]
,
Rob Hyndman [aut],
Earo Wang [aut] ,
Di Cook [ctb],
George Athanasopoulos [ctb],
David Holt [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fabletools versions 0.4.1 dated 2024-03-02 and 0.4.2 dated 2024-04-22
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NEWS.md | 4 ++++ R/plot.R | 2 +- build/fabletools.pdf |binary build/stage23.rdb |only build/vignette.rds |binary inst/WORDLIST | 1 + inst/doc/extension_models.html | 18 +++++++++--------- 9 files changed, 26 insertions(+), 20 deletions(-)
Title: Download and Tidy IPC and CH Data
Description: Utilities to access Integrated Food Security Phase Classification
(IPC) and Cadre Harmonisé (CH) food security data. Wrapper functions are
available for all of the 'IPC-CH' Public API (<https://docs.api.ipcinfo.org>)
simplified and advanced endpoints to easily download the data in a clean and
tidy format.
Author: Seth Caldwell [aut, cre, cph]
Maintainer: Seth Caldwell <caldwellst@gmail.com>
Diff between ripc versions 0.2.1 dated 2024-03-15 and 0.3.0 dated 2024-04-22
ripc-0.2.1/ripc/R/ripc-package.R |only ripc-0.2.1/ripc/R/utils-imports.R |only ripc-0.3.0/ripc/DESCRIPTION | 10 ripc-0.3.0/ripc/MD5 | 46 ++- ripc-0.3.0/ripc/NAMESPACE | 2 ripc-0.3.0/ripc/NEWS.md | 12 ripc-0.3.0/ripc/R/Ripc-package.R |only ripc-0.3.0/ripc/R/create_areas_df.R |only ripc-0.3.0/ripc/R/create_base_df.R |only ripc-0.3.0/ripc/R/create_groups_df.R |only ripc-0.3.0/ripc/R/ipc_get.R | 81 ++---- ripc-0.3.0/ripc/R/ipc_get_analyses.R | 30 +- ripc-0.3.0/ripc/R/ipc_get_areas.R | 113 +++------ ripc-0.3.0/ripc/R/ipc_get_country.R | 54 ---- ripc-0.3.0/ripc/R/ipc_get_icons.R | 7 ripc-0.3.0/ripc/R/ipc_get_points.R | 50 ---- ripc-0.3.0/ripc/R/ipc_get_population.R | 281 +---------------------- ripc-0.3.0/ripc/R/null_converter.R |only ripc-0.3.0/ripc/R/population_utils.R |only ripc-0.3.0/ripc/README.md | 47 ++- ripc-0.3.0/ripc/build/vignette.rds |binary ripc-0.3.0/ripc/inst/WORDLIST |only ripc-0.3.0/ripc/man/figures/README-geojson-1.png |only ripc-0.3.0/ripc/man/ipc_get.Rd | 10 ripc-0.3.0/ripc/man/ipc_get_analyses.Rd | 3 ripc-0.3.0/ripc/man/ipc_get_areas.Rd | 16 - ripc-0.3.0/ripc/man/ipc_get_country.Rd | 4 ripc-0.3.0/ripc/man/ipc_get_points.Rd | 5 ripc-0.3.0/ripc/man/ipc_get_population.Rd | 3 29 files changed, 217 insertions(+), 557 deletions(-)
Title: R Markdown and Bookdown Templates to Publish Documents
Description: Producing high-quality documents suitable for publication directly from R is made possible by the R Markdown ecosystem.
'memoiR' makes it easy.
It provides templates to knit memoirs, articles and slideshows with helpers to publish the documents on GitHub Pages and activate continuous integration.
Author: Eric Marcon [aut, cre]
Maintainer: Eric Marcon <eric.marcon@agroparistech.fr>
Diff between memoiR versions 1.2-7 dated 2024-02-26 and 1.2-9 dated 2024-04-22
DESCRIPTION | 6 MD5 | 28 - NEWS.md | 7 R/memoiR.R | 190 +++++----- build/vignette.rds |binary inst/doc/memoiR.Rmd | 2 inst/doc/memoiR.html | 2 inst/rmarkdown/templates/memoir/skeleton/82-syntax.Rmd | 8 inst/rmarkdown/templates/simple_article/skeleton/skeleton.Rmd | 10 inst/rmarkdown/templates/stylish_article/skeleton/skeleton.Rmd | 10 man/build_ghworkflow.Rd | 2 man/build_githubpages.Rd | 10 man/build_gitignore.Rd | 2 man/build_readme.Rd | 2 vignettes/memoiR.Rmd | 2 15 files changed, 146 insertions(+), 135 deletions(-)
Title: Automated Retrieval of ACLED Conflict Event Data
Description: Access and manage the application programming interface (API) of the Armed Conflict Location & Event Data Project (ACLED) at <https://acleddata.com/>. The package makes it easy to retrieve a user-defined sample (or all of the available data) of ACLED, enabling a seamless integration of regular data updates into the research work flow. It requires a minimal number of dependencies. See the package's README file for a note on replicability when drawing on ACLED data. When using this package, you acknowledge that you have read ACLED's terms and conditions of use, and that you agree with their attribution requirements.
Author: Christoph Dworschak [aut, cre]
,
Rob Williams [ctb]
Maintainer: Christoph Dworschak <dworschak@posteo.de>
Diff between acled.api versions 1.1.7 dated 2024-01-10 and 1.1.8 dated 2024-04-22
DESCRIPTION | 8 ++-- MD5 | 16 ++++----- NEWS.md | 11 ++++++ R/acled.api.R | 75 ++++++++++++++++++++++++++---------------- R/acled.api.internal.R | 8 +--- R/supp.fun.R | 6 +-- README.md | 77 ++++++++++++++++++++++++++++---------------- man/acled.api.Rd | 31 +++++++++++------ tests/testthat/test-acled.R | 5 +- 9 files changed, 146 insertions(+), 91 deletions(-)
Title: Functions Used for SAiVE Group Research, Collaborations, and
Publications
Description: Holds functions developed by the University of Ottawa's SAiVE
(Spatio-temporal Analysis of isotope Variations in the Environment)
research group with the intention of facilitating the re-use of code,
foster good code writing practices, and to allow others to benefit
from the work done by the SAiVE group. Contributions are welcome via
the 'GitHub' repository <https://github.com/UO-SAiVE/SAiVE> by group members as well as non-members.
Author: Ghislain de Laplante [aut, cre, cph]
Maintainer: Ghislain de Laplante <ghislain.delaplante@yukon.ca>
Diff between SAiVE versions 1.0.4 dated 2024-02-07 and 1.0.5 dated 2024-04-22
DESCRIPTION | 6 MD5 | 26 +- NEWS.md | 15 + R/createStreams.R | 16 - R/drainageBasins.R | 64 +++---- R/hydroProcess.R | 20 +- R/modelMatch.R | 6 R/spatPredict.R | 309 ++++++++++++++++++++++++----------- R/thinFeatures.R | 16 - R/wbtCheck.R | 2 man/spatPredict.Rd | 48 +++-- tests/testthat/test-createStreams.R | 2 tests/testthat/test-drainageBasins.R | 2 tests/testthat/test-hydroProcess.R | 2 14 files changed, 346 insertions(+), 188 deletions(-)
Title: Robust Rank Correlation Coefficient and Test
Description: Provides the robust gamma rank correlation coefficient as introduced by
Bodenhofer, Krone, and Klawonn (2013) <DOI:10.1016/j.ins.2012.11.026>
along with a permutation-based rank correlation test.
The rank correlation coefficient and the test are explicitly
designed for dealing with noisy numerical data.
Author: Martin Krone [aut], Ulrich Bodenhofer [aut,cre]
Maintainer: Ulrich Bodenhofer <ulrich@bodenhofer.com>
Diff between rococo versions 1.1.7 dated 2018-10-12 and 1.1.8 dated 2024-04-22
rococo-1.1.7/rococo/vignettes/JKU_EN_noName.pdf |only rococo-1.1.7/rococo/vignettes/bioinf-article.txi |only rococo-1.1.7/rococo/vignettes/bioinf-bar.png |only rococo-1.1.7/rococo/vignettes/bioinf.cls |only rococo-1.1.8/rococo/DESCRIPTION | 15 ++-- rococo-1.1.8/rococo/MD5 | 21 ++---- rococo-1.1.8/rococo/README.md | 31 ++++++--- rococo-1.1.8/rococo/build/vignette.rds |binary rococo-1.1.8/rococo/inst/CITATION | 14 ++-- rococo-1.1.8/rococo/inst/NEWS | 7 +- rococo-1.1.8/rococo/inst/doc/rococo.Rnw | 78 ++--------------------- rococo-1.1.8/rococo/inst/doc/rococo.pdf |binary rococo-1.1.8/rococo/vignettes/rococo.Rnw | 78 ++--------------------- rococo-1.1.8/rococo/vignettes/ubmanual.cls |only 14 files changed, 71 insertions(+), 173 deletions(-)
Title: Interface to the 'OpenGWAS' Database API
Description: Interface to the 'OpenGWAS' database API <https://gwas-api.mrcieu.ac.uk/>. Includes a wrapper
to make generic calls to the API, plus convenience functions for
specific queries.
Author: Gibran Hemani [aut, cre, cph] ,
Ben Elsworth [aut] ,
Tom Palmer [aut] ,
Rita Rasteiro [aut]
Maintainer: Gibran Hemani <g.hemani@bristol.ac.uk>
Diff between ieugwasr versions 0.2.2 dated 2024-03-28 and 1.0.0 dated 2024-04-22
ieugwasr-0.2.2/ieugwasr/R/utils-pipe.R |only ieugwasr-0.2.2/ieugwasr/inst/doc/timings.R |only ieugwasr-0.2.2/ieugwasr/inst/doc/timings.Rmd |only ieugwasr-0.2.2/ieugwasr/inst/doc/timings.html |only ieugwasr-0.2.2/ieugwasr/man/dot-data.Rd |only ieugwasr-0.2.2/ieugwasr/man/get_access_token.Rd |only ieugwasr-0.2.2/ieugwasr/man/pipe.Rd |only ieugwasr-0.2.2/ieugwasr/man/revoke_access_token.Rd |only ieugwasr-0.2.2/ieugwasr/vignettes/timings.Rmd |only ieugwasr-1.0.0/ieugwasr/DESCRIPTION | 10 ieugwasr-1.0.0/ieugwasr/MD5 | 94 ++++----- ieugwasr-1.0.0/ieugwasr/NAMESPACE | 7 ieugwasr-1.0.0/ieugwasr/NEWS.md | 10 ieugwasr-1.0.0/ieugwasr/R/afl2.r | 47 +--- ieugwasr-1.0.0/ieugwasr/R/api.R | 82 +++---- ieugwasr-1.0.0/ieugwasr/R/globals.R |only ieugwasr-1.0.0/ieugwasr/R/ld_clump.R | 23 -- ieugwasr-1.0.0/ieugwasr/R/ld_matrix.R | 9 ieugwasr-1.0.0/ieugwasr/R/query.R | 120 ++++------- ieugwasr-1.0.0/ieugwasr/R/variants.R | 20 + ieugwasr-1.0.0/ieugwasr/R/zzz.R | 21 -- ieugwasr-1.0.0/ieugwasr/README.md | 19 + ieugwasr-1.0.0/ieugwasr/build/vignette.rds |binary ieugwasr-1.0.0/ieugwasr/inst/doc/guide.Rmd | 37 +-- ieugwasr-1.0.0/ieugwasr/inst/doc/guide.html | 176 +++++++++-------- ieugwasr-1.0.0/ieugwasr/man/afl2_chrpos.Rd | 4 ieugwasr-1.0.0/ieugwasr/man/afl2_list.Rd | 7 ieugwasr-1.0.0/ieugwasr/man/afl2_rsid.Rd | 4 ieugwasr-1.0.0/ieugwasr/man/api_query.Rd | 6 ieugwasr-1.0.0/ieugwasr/man/associations.Rd | 7 ieugwasr-1.0.0/ieugwasr/man/batches.Rd | 4 ieugwasr-1.0.0/ieugwasr/man/check_access_token.Rd | 5 ieugwasr-1.0.0/ieugwasr/man/editcheck.Rd | 7 ieugwasr-1.0.0/ieugwasr/man/fill_n.Rd | 12 - ieugwasr-1.0.0/ieugwasr/man/get_opengwas_jwt.Rd |only ieugwasr-1.0.0/ieugwasr/man/gwasinfo.Rd | 4 ieugwasr-1.0.0/ieugwasr/man/infer_ancestry.Rd | 4 ieugwasr-1.0.0/ieugwasr/man/ld_clump.Rd | 4 ieugwasr-1.0.0/ieugwasr/man/ld_clump_api.Rd | 4 ieugwasr-1.0.0/ieugwasr/man/ld_matrix.Rd | 3 ieugwasr-1.0.0/ieugwasr/man/ld_reflookup.Rd | 4 ieugwasr-1.0.0/ieugwasr/man/phewas.Rd | 12 - ieugwasr-1.0.0/ieugwasr/man/tophits.Rd | 9 ieugwasr-1.0.0/ieugwasr/man/user.Rd |only ieugwasr-1.0.0/ieugwasr/man/variants_chrpos.Rd | 4 ieugwasr-1.0.0/ieugwasr/man/variants_gene.Rd | 4 ieugwasr-1.0.0/ieugwasr/man/variants_rsid.Rd | 4 ieugwasr-1.0.0/ieugwasr/man/variants_to_rsid.Rd | 4 ieugwasr-1.0.0/ieugwasr/tests/testthat/test_afl2.r | 2 ieugwasr-1.0.0/ieugwasr/tests/testthat/test_api.r | 4 ieugwasr-1.0.0/ieugwasr/tests/testthat/test_ld.r | 4 ieugwasr-1.0.0/ieugwasr/tests/testthat/test_query.r | 32 ++- ieugwasr-1.0.0/ieugwasr/tests/testthat/test_variants.r | 2 ieugwasr-1.0.0/ieugwasr/vignettes/guide.Rmd | 37 +-- 54 files changed, 422 insertions(+), 450 deletions(-)
Title: Color Science Methods and Data
Description: Methods and data for color science - color conversions by observer,
illuminant, and gamma. Color matching functions and chromaticity diagrams.
Color indices, color differences, and spectral data conversion/analysis.
This package is deprecated and will someday be removed; for reasons and details please see the README file.
Author: Jose Gama [aut],
Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between colorscience versions 1.0.8 dated 2019-10-29 and 1.0.9 dated 2024-04-22
DESCRIPTION | 10 +- MD5 | 80 +++++++++++------------ NEWS.md | 8 ++ README.md | 2 man/CIE1931XYZ2CIE1931xyz.Rd | 4 - man/CIE1931XYZ2CIE1960uv.Rd | 4 - man/CIE1931XYZ2CIE1976uv.Rd | 4 - man/CIE1931xy2CIE1960uv.Rd | 4 - man/CIE1931xy2CIE1976uv.Rd | 4 - man/CIE1960UCS2CIE1964.Rd | 4 - man/CIE1960UCS2xy.Rd | 4 - man/CIELabtoDIN99.Rd | 4 - man/DIN99toCIELab.Rd | 4 - man/Hue.2.RGB.Rd | 4 - man/MaxChromaFromExtrapRenotationData.Rd | 4 - man/MaxChromasForStandardMunsellHuesAndValues.Rd | 4 - man/MunsellHues.Rd | 4 - man/MunsellNeutrals2sRGB.Rd | 4 - man/MunsellSpectral.Rd | 4 - man/PhotoYCC2RGB.Rd | 4 - man/RGB2PhotoYCC.Rd | 4 - man/RGB2YCbCr.Rd | 4 - man/RGB2YIQ.Rd | 4 - man/RGB2YPbPr.Rd | 4 - man/TCSdata.Rd | 4 - man/YCbCr2RGB.Rd | 4 - man/YIQ2RGB.Rd | 4 - man/YPbPr2RGB.Rd | 4 - man/compuphaseDifferenceRGB.Rd | 4 - man/createIsoTempLinesTable.Rd | 4 - man/footcandle2candela.steradian.sqmeter.Rd | 4 - man/footcandle2lux.Rd | 4 - man/footcandle2watt.sqcentimeter.Rd | 4 - man/huedegreemunsell.Rd | 4 - man/kelvin2xy.Rd | 4 - man/spectra2CCT.Rd | 4 - man/spectra2CRIGAIFSCI.Rd | 4 - man/spectra2lux.Rd | 4 - man/whitepointsRGB.Rd | 4 - man/whitepointsilluminants.Rd | 4 - man/xy2CCT.HernandezAndres.Rd | 4 - 41 files changed, 127 insertions(+), 121 deletions(-)
Title: An Implementation of the Bayesian Markov (Renewal) Mixed Models
Description: The Bayesian Markov renewal mixed models take sequentially observed categorical data with continuous duration times, being either state duration or inter-state duration. These models comprehensively analyze the stochastic dynamics of both state transitions and duration times under the influence of multiple exogenous factors and random individual effect. The default setting flexibly models the transition probabilities using Dirichlet mixtures and the duration times using gamma mixtures. It also provides the flexibility of modeling the categorical sequences using Bayesian Markov mixed models alone, either ignoring the duration times altogether or dividing duration time into multiples of an additional category in the sequence by a user-specific unit. The package allows extensive inference of the state transition probabilities and the duration times as well as relevant plots and graphs. It also includes a synthetic data set to demonstrate the desired format of input data set and the utilit [...truncated...]
Author: Yutong Wu [aut, cre],
Abhra Sarkar [aut]
Maintainer: Yutong Wu <yutong.wu@utexas.edu>
Diff between BMRMM versions 1.0.0 dated 2023-06-19 and 1.0.1 dated 2024-04-22
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/BMRMM.R | 12 +++++++----- R/model_cont_isi.R | 7 +++++-- R/model_transition.R | 6 +++++- R/print_and_plot_results.R | 12 ++++++------ R/print_and_plot_results_fn.R | 7 +++++-- man/BMRMM.Rd | 12 +++++++----- man/summary.BMRMM.Rd | 12 ++++++------ 9 files changed, 52 insertions(+), 38 deletions(-)