Title: Japanese Text Processing Tools
Description: A collection of Japanese text processing tools for filling
Japanese iteration marks, Japanese character type conversions,
segmentation by phrase, and text normalization which is based on rules
for the 'Sudachi' morphological analyzer and the 'NEologd' (Neologism
dictionary for 'MeCab'). These features are specific to Japanese and
are not implemented in 'ICU' (International Components for Unicode).
Author: Akiru Kato [cre, aut],
Koki Takahashi [cph] ,
Shuhei Iitsuka [cph] ,
Taku Kudo [cph]
Maintainer: Akiru Kato <paithiov909@gmail.com>
Diff between audubon versions 0.5.1 dated 2023-05-02 and 0.5.2 dated 2024-04-26
DESCRIPTION | 8 +- MD5 | 62 ++++++++++----------- NEWS.md | 8 ++ R/audubon-package.R | 1 R/bind_lr.R | 7 +- R/bind_tf_idf2.R | 85 +++++++++++++++++------------- R/collapse_tokens.R | 7 +- R/lexical_density.R | 2 R/mute_tokens.R | 5 + R/pack.R | 53 ++++++------------ R/prettify.R | 19 +++--- R/strj-fill.R | 2 R/strj-japanese.R | 16 ++--- R/strj-normalize.R | 2 R/strj-rewrite.R | 2 R/strj-tokenize.R | 6 +- R/tokenize-impl.R | 4 - R/zzz.R | 3 + README.md | 8 +- build/partial.rdb |binary inst/packer/audubon.bundle.js | 2 inst/packer/audubon.bundle.js.LICENSE.txt | 18 ++++++ inst/testdata/testdata.rda |binary man/bind_lr.Rd | 5 + man/bind_tf_idf2.Rd | 32 ++++++----- man/collapse_tokens.Rd | 5 + man/mute_tokens.Rd | 5 + man/ngram_tokenizer.Rd | 2 man/pack.Rd | 5 + man/prettify.Rd | 5 + tests/testthat/test-bind_tf_idf2.R | 41 ++++++++++++-- tests/testthat/test-other-utils.R | 2 32 files changed, 245 insertions(+), 177 deletions(-)
Title: A 'Shiny' App to Analyze Accelerometer-Measured Daily Physical
Behavior Data
Description: A tool to analyse 'ActiGraph' accelerometer data and to implement
the use of the PROactive Physical Activity in COPD (chronic obstructive pulmonary disease) instruments. Once analysis
is completed, the app allows to export results to .csv files and to generate
a report of the measurement. All the configured inputs relevant for interpreting
the results are recorded in the report. In addition to the existing 'R' packages
that are fully integrated with the app, the app uses some functions from the
'actigraph.sleepr' package developed by Petkova (2021) <https://github.com/dipetkov/actigraph.sleepr/>.
Author: Pierre-Yves de Muellenheim [cre, aut]
Maintainer: Pierre-Yves de Muellenheim <pydemull@uco.fr>
Diff between activAnalyzer versions 2.0.2 dated 2024-01-08 and 2.1.0 dated 2024-04-26
DESCRIPTION | 28 - MD5 | 66 ++-- NEWS.md | 8 R/app_ui.R | 2 R/compute_intensity_distri_metrics.R | 12 R/compute_mx.R |only R/compute_peak_step_acc.R |only R/create_fig_mvpa.R | 94 +++++ R/create_fig_pal.R | 50 +++ R/create_fig_ratio_mvpa_sed.R | 87 +++++ R/create_fig_res_by_day.R | 292 ++++++++++++++++++ R/create_fig_sed.R | 85 +++++ R/create_fig_steps.R | 100 ++++++ R/get_pal_status.R | 15 R/recap_by_day.R | 24 - README.md | 22 - build/vignette.rds |binary inst/doc/activAnalyzer.html | 24 - inst/guide/user_guide_en.Rmd | 12 inst/guide/user_guide_en.aux | 100 ++---- inst/guide/user_guide_en.log | 542 +++++++++++++++++---------------- inst/guide/user_guide_en.pdf |binary inst/guide/user_guide_fr.Rmd | 12 inst/guide/user_guide_fr.log | 560 +++++++++++++++++------------------ inst/guide/user_guide_fr.pdf |binary inst/report/report_en_long.Rmd | 2 inst/report/report_en_short.Rmd | 2 man/compute_mx.Rd |only man/compute_peak_step_acc.Rd |only man/create_fig_mvpa.Rd | 2 man/create_fig_pal.Rd | 2 man/create_fig_ratio_mvpa_sed.Rd | 2 man/create_fig_res_by_day.Rd | 2 man/create_fig_sed.Rd | 2 man/create_fig_steps.Rd | 2 man/get_pal_status.Rd | 2 36 files changed, 1426 insertions(+), 727 deletions(-)
Title: Dungeons & Dragons Functions for Players and Dungeon Masters
Description: The goal of 'dndR' is to provide a suite of Dungeons & Dragons related functions.
This package is meant to be useful both to players and Dungeon Masters (DMs).
All functions currently focus on Fifth Edition (a.k.a. "5e") but once the next edition is published functions will likely be expanded to include any rule changes.
Author: Nicholas Lyon [aut, cre, cph] ,
Tim Schatto-Eckrodt [aut] ,
Humberto Nappo [ctb]
Maintainer: Nicholas Lyon <njlyon@alumni.iastate.edu>
Diff between dndR versions 1.3.1 dated 2023-08-07 and 2.0.0 dated 2024-04-26
dndR-1.3.1/dndR/inst/doc/dndR_Vignette.R |only dndR-1.3.1/dndR/inst/doc/dndR_Vignette.Rmd |only dndR-1.3.1/dndR/inst/doc/dndR_Vignette.html |only dndR-1.3.1/dndR/vignettes/dndR_Vignette.Rmd |only dndR-2.0.0/dndR/DESCRIPTION | 22 ++-- dndR-2.0.0/dndR/MD5 | 65 ++++++++++---- dndR-2.0.0/dndR/NAMESPACE | 5 + dndR-2.0.0/dndR/NEWS.md | 12 ++ dndR-2.0.0/dndR/R/creature_list.R |only dndR-2.0.0/dndR/R/creature_text.R |only dndR-2.0.0/dndR/R/data-doc_creatures.R |only dndR-2.0.0/dndR/R/encounter_creator.R |only dndR-2.0.0/dndR/R/reroll.R |only dndR-2.0.0/dndR/R/roll.R | 92 ++++--------------- dndR-2.0.0/dndR/R/spell_list.R | 1 dndR-2.0.0/dndR/README.md | 102 ++++++++++++---------- dndR-2.0.0/dndR/build/vignette.rds |binary dndR-2.0.0/dndR/data/creatures.rda |only dndR-2.0.0/dndR/data/spells.rda |binary dndR-2.0.0/dndR/inst/doc/dndr_00_dice.R |only dndR-2.0.0/dndR/inst/doc/dndr_00_dice.Rmd |only dndR-2.0.0/dndR/inst/doc/dndr_00_dice.html |only dndR-2.0.0/dndR/inst/doc/dndr_01_characters.R |only dndR-2.0.0/dndR/inst/doc/dndr_01_characters.Rmd |only dndR-2.0.0/dndR/inst/doc/dndr_01_characters.html |only dndR-2.0.0/dndR/inst/doc/dndr_02_creatures.R |only dndR-2.0.0/dndR/inst/doc/dndr_02_creatures.Rmd |only dndR-2.0.0/dndR/inst/doc/dndr_02_creatures.html |only dndR-2.0.0/dndR/inst/doc/dndr_03_spells.R |only dndR-2.0.0/dndR/inst/doc/dndr_03_spells.Rmd |only dndR-2.0.0/dndR/inst/doc/dndr_03_spells.html |only dndR-2.0.0/dndR/inst/doc/dndr_04_encounters.R |only dndR-2.0.0/dndR/inst/doc/dndr_04_encounters.Rmd |only dndR-2.0.0/dndR/inst/doc/dndr_04_encounters.html |only dndR-2.0.0/dndR/inst/doc/dndr_05_visuals.R |only dndR-2.0.0/dndR/inst/doc/dndr_05_visuals.Rmd |only dndR-2.0.0/dndR/inst/doc/dndr_05_visuals.html |only dndR-2.0.0/dndR/inst/doc/dndr_99_dmg-vs-dndr.R |only dndR-2.0.0/dndR/inst/doc/dndr_99_dmg-vs-dndr.Rmd |only dndR-2.0.0/dndR/inst/doc/dndr_99_dmg-vs-dndr.html |only dndR-2.0.0/dndR/man/creature_list.Rd |only dndR-2.0.0/dndR/man/creature_text.Rd |only dndR-2.0.0/dndR/man/creatures.Rd |only dndR-2.0.0/dndR/man/dndR-package.Rd | 14 ++- dndR-2.0.0/dndR/man/encounter_creator.Rd |only dndR-2.0.0/dndR/man/reroll.Rd |only dndR-2.0.0/dndR/man/roll.Rd | 16 ++- dndR-2.0.0/dndR/man/spell_list.Rd | 1 dndR-2.0.0/dndR/vignettes/dndr_00_dice.Rmd |only dndR-2.0.0/dndR/vignettes/dndr_01_characters.Rmd |only dndR-2.0.0/dndR/vignettes/dndr_02_creatures.Rmd |only dndR-2.0.0/dndR/vignettes/dndr_03_spells.Rmd |only dndR-2.0.0/dndR/vignettes/dndr_04_encounters.Rmd |only dndR-2.0.0/dndR/vignettes/dndr_05_visuals.Rmd |only dndR-2.0.0/dndR/vignettes/dndr_99_dmg-vs-dndr.Rmd |only 55 files changed, 177 insertions(+), 153 deletions(-)
Title: Classification with Parallel Factor Analysis
Description: Classification using Richard A. Harshman's Parallel Factor Analysis-1 (Parafac) model or Parallel Factor Analysis-2 (Parafac2) model fit to a three-way or four-way data array. See Harshman and Lundy (1994): <doi:10.1016/0167-9473(94)90132-5>. Uses component weights from one mode of a Parafac or Parafac2 model as features to tune parameters for one or more classification methods via a k-fold cross-validation procedure. Allows for constraints on different tensor modes. Supports penalized logistic regression, support vector machine, random forest, feed-forward neural network, regularized discriminant analysis, and gradient boosting machine. Supports binary and multiclass classification. Predicts class labels or class probabilities and calculates multiple classification performance measures. Implements parallel computing via the 'parallel' and 'doParallel' packages.
Author: Matthew A. Snodgress <snodg031@umn.edu>
Maintainer: Matthew A. Snodgress <snodg031@umn.edu>
Diff between cpfa versions 1.1-3 dated 2024-04-06 and 1.1-4 dated 2024-04-26
cpfa-1.1-3/cpfa/R/predict.cpfa.R |only cpfa-1.1-3/cpfa/R/print.cpfa.R |only cpfa-1.1-3/cpfa/R/tune.cpfa.R |only cpfa-1.1-3/cpfa/man/predict.cpfa.Rd |only cpfa-1.1-3/cpfa/man/print.cpfa.Rd |only cpfa-1.1-3/cpfa/man/tune.cpfa.Rd |only cpfa-1.1-4/cpfa/DESCRIPTION | 8 ++++---- cpfa-1.1-4/cpfa/MD5 | 18 ++++++------------ cpfa-1.1-4/cpfa/NAMESPACE | 2 -- cpfa-1.1-4/cpfa/R/kcv.gbm.R | 5 ++--- cpfa-1.1-4/cpfa/inst/ChangeLog.txt | 8 ++++++++ cpfa-1.1-4/cpfa/man/cpfa.Rd | 6 +++--- cpfa-1.1-4/cpfa/man/cpm.Rd | 4 ++-- 13 files changed, 25 insertions(+), 26 deletions(-)
Title: Tools for Creating, Updating, and Analyzing Survey Replicate
Weights
Description: Provides tools for creating and working with survey replicate weights,
extending functionality of the 'survey' package from Lumley (2004) <doi:10.18637/jss.v009.i08>.
Implements bootstrap methods for complex surveys, including the generalized survey bootstrap
as described by Beaumont and Patak (2012) <doi:10.1111/j.1751-5823.2011.00166.x>.
Methods are provided for applying nonresponse adjustments to
both full-sample and replicate weights as described by
Rust and Rao (1996) <doi:10.1177/096228029600500305>.
Implements methods for sample-based calibration described by Opsomer and Erciulescu (2021)
<https://www150.statcan.gc.ca/n1/pub/12-001-x/2021002/article/00006-eng.htm>.
Diagnostic functions are included to compare weights and weighted estimates
from different sets of replicate weights.
Author: Ben Schneider [aut, cre]
Maintainer: Ben Schneider <benjamin.julius.schneider@gmail.com>
Diff between svrep versions 0.6.3 dated 2023-09-09 and 0.6.4 dated 2024-04-26
DESCRIPTION | 6 MD5 | 104 ++++--- NAMESPACE | 3 NEWS.md | 291 ++++++++------------- R/add_inactive_replicates.R |only R/as_bootstrap_design.R | 48 +-- R/as_jackknife_design.R | 80 ++++- R/calibrate_to_sample.R | 6 R/fays_generalized_replication.R | 63 ++-- R/generalized_bootstrap.R | 235 ++-------------- R/libraries_data.R | 58 ++-- R/lou_vax_data.R | 30 +- R/make_bootstrap_weights.R | 18 - R/quadratic_forms.R | 83 ++--- R/quadratic_forms_of_survey_design_objects.R | 46 +-- R/rescale_reps.R |only R/shuffle_replicates.R |only R/stack_replicate_designs.R | 44 ++- R/subsample_replicates.R |only R/summarize_rep_weights.R | 34 +- R/variance-estimators.R | 8 README.md | 190 +++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/bootstrap-replicates.R | 8 inst/doc/nonresponse-adjustments.R | 6 inst/doc/sample-based-calibration.R | 10 inst/doc/sample-based-calibration.html | 78 ++--- inst/doc/two-phase-sampling.R | 6 man/add_inactive_replicates.Rd |only man/as_bootstrap_design.Rd | 48 +-- man/as_fays_gen_rep_design.Rd | 55 ++- man/as_gen_boot_design.Rd | 47 +-- man/as_random_group_jackknife_design.Rd | 19 - man/calibrate_to_sample.Rd | 6 man/get_design_quad_form.Rd | 46 +-- man/libraries.Rd | 58 ++-- man/lou_pums_microdata.Rd | 22 - man/lou_vax_survey_control_totals.Rd | 8 man/make_ppswor_approx_matrix.Rd | 12 man/make_quad_form_matrix.Rd | 35 +- man/make_rwyb_bootstrap_weights.Rd | 18 - man/rescale_reps.Rd | 56 ++-- man/shift_weight.Rd | 46 +-- man/shuffle_replicates.Rd |only man/stack_replicate_designs.Rd | 140 +++++----- man/subsample_replicates.Rd |only man/summarize_rep_weights.Rd | 34 +- man/variance-estimators.Rd | 8 tests/testthat/test-add_inactive_replicates.R |only tests/testthat/test-calibrate_to_estimate.R | 4 tests/testthat/test-database-backed-designs.R | 12 tests/testthat/test-fays-generalized-replication.R | 16 + tests/testthat/test-generalized-bootstrap.R | 4 tests/testthat/test-random-group-jackknife.R | 37 ++ tests/testthat/test-shuffle_replicates.R |only tests/testthat/test-stack_replicate_designs.R | 31 ++ tests/testthat/test-subsample_replicates.R |only 58 files changed, 1078 insertions(+), 1139 deletions(-)
Title: TeX-to-HTML/MathML Translators TtH/TtM
Description: C source code and R wrappers for the tth/ttm TeX-to-HTML/MathML translators.
Author: Ian H. Hutchinson [aut] ,
Friedrich Leisch [aut] ,
Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between tth versions 4.12-0-1 dated 2022-03-30 and 4.16-0 dated 2024-04-26
tth-4.12-0-1/tth/NEWS |only tth-4.12-0-1/tth/README |only tth-4.16-0/tth/DESCRIPTION | 25 tth-4.16-0/tth/MD5 | 20 tth-4.16-0/tth/NEWS.md |only tth-4.16-0/tth/R/tex2html.R | 4 tth-4.16-0/tth/README.md |only tth-4.16-0/tth/man/figures |only tth-4.16-0/tth/man/tth-package.Rd | 8 tth-4.16-0/tth/man/tth.Rd | 13 tth-4.16-0/tth/src/tth.c | 2690 ++++++++++++++++++------------------ tth-4.16-0/tth/src/ttm.c | 2822 +++++++++++++++++++------------------- 12 files changed, 2801 insertions(+), 2781 deletions(-)
Title: Generation of Artificial Binary Data
Description: Generation of correlated artificial binary data.
Author: Friedrich Leisch [aut] ,
Andreas Weingessel [aut],
Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between bindata versions 0.9-20 dated 2021-01-29 and 0.9-21 dated 2024-04-26
DESCRIPTION | 25 +++++++++++++++---------- MD5 | 6 +++--- R/sysdata.rda |binary inst/doc/artdatagen.pdf |binary 4 files changed, 18 insertions(+), 13 deletions(-)
Title: Analysing Convergent Evolution using the Wheatsheaf Index
Description: Analysing convergent evolution using the Wheatsheaf index, described in Arbuckle et al. (2014) <doi: 10.1111/2041-210X.12195>, and some other unrelated but perhaps useful functions.
Author: Kevin Arbuckle and Amanda Minter
Maintainer: Kevin Arbuckle <kevin.arbuckle@swansea.ac.uk>
Diff between windex versions 2.0.7 dated 2023-12-14 and 2.0.8 dated 2024-04-26
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NAMESPACE | 2 +- R/mark.dist.R | 8 ++++---- R/nodeDist.R | 10 ++++++++-- R/test.windex.R | 4 ++-- R/treedatacheck.R | 35 ++++++++++++++++++++++++++++++----- R/windex.sim.test.R | 4 ++-- man/mark.dist.Rd | 5 ++++- man/test.windex.Rd | 8 +++++++- man/windex.sim.test.Rd | 8 +++++++- 11 files changed, 79 insertions(+), 33 deletions(-)
Title: Deconvolution of Spatial Transcriptomics Data Based on Neural
Networks
Description: Deconvolution of spatial transcriptomics data based on neural networks and single-cell RNA-seq data. SpatialDDLS implements a workflow to create neural network models able to make accurate estimates of cell composition of spots from spatial transcriptomics data using deep learning and the meaningful information provided by single-cell RNA-seq data. See Torroja and Sanchez-Cabo (2019) <doi:10.3389/fgene.2019.00978> and Mañanes et al. (2024) <doi:10.1093/bioinformatics/btae072> to get an overview of the method and see some examples of its performance.
Author: Diego Mananes [aut, cre] ,
Carlos Torroja [aut] ,
Fatima Sanchez-Cabo [aut]
Maintainer: Diego Mananes <dmananesc@cnic.es>
Diff between SpatialDDLS versions 1.0.1 dated 2024-03-15 and 1.0.2 dated 2024-04-26
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md | 6 ++++++ R/utils.R | 38 +++++++++++++++++++++++++++----------- inst/CITATION |only man/installTFpython.Rd | 15 ++++++++++++++- 6 files changed, 55 insertions(+), 19 deletions(-)
Title: A Wrapper of the JavaScript Library 'jsTree'
Description: Creates interactive trees that can be included in 'Shiny'
apps and R markdown documents. A tree allows to represent hierarchical
data (e.g. the contents of a directory). Similar to the 'shinyTree'
package but offers more features and options, such as the grid
extension, restricting the drag-and-drop behavior, and settings for
the search functionality. It is possible to attach some data to the
nodes of a tree and then to get these data in 'Shiny' when a node is
selected. Also provides a 'Shiny' gadget allowing to manipulate one or
more folders, and a 'Shiny' module allowing to navigate in the server
side file system.
Author: Stephane Laurent [aut, cre],
jQuery contributors [ctb, cph] ,
Ivan Bozhanov [ctb, cph] ,
Vedran Opacic [ctb, cph] ,
Avi Deitcher [ctb, cph] ,
Philip Hutchison [ctb, cph] ,
Terence Eden [ctb, cph]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between jsTreeR versions 2.5.0 dated 2023-12-19 and 2.6.0 dated 2024-04-26
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 12 ++++++++++++ R/jstree.R | 8 ++++++-- README.md | 21 +++++++++++++++++++++ inst/htmlwidgets/jstreer.js | 14 +++++++++++--- inst/htmlwidgets/lib/jstreegrid/jstreegrid.min.js | 2 +- man/jstree.Rd | 5 ++++- 8 files changed, 66 insertions(+), 18 deletions(-)
Title: Structural Data for Norway
Description: Datasets relating to population in municipalities, municipality/county matching, and how different municipalities have merged/redistricted over time from 2006 to 2024.
Author: Richard Aubrey White [aut, cre]
,
Chi Zhang [aut] ,
CSIDS [cph]
Maintainer: Richard Aubrey White <hello@rwhite.no>
Diff between csdata versions 2024.1.17 dated 2024-01-18 and 2024.4.26 dated 2024-04-26
DESCRIPTION | 6 MD5 | 14 NEWS.md | 8 R/nor_population_by_age_cats.R | 7 R/sysdata.rda |binary inst/doc/csdata.html | 318 ++++++++-------- inst/doc/locations_norway.html | 106 ++--- inst/doc/population_norway.html | 764 ++++++++++++++++++++-------------------- 8 files changed, 628 insertions(+), 595 deletions(-)
Title: Black Marble Data and Statistics
Description: Geographically referenced data and statistics of nighttime lights from NASA Black Marble <https://blackmarble.gsfc.nasa.gov/>.
Author: Robert Marty [aut, cre] ,
Gabriel Stefanini Vicente [aut]
Maintainer: Robert Marty <rmarty@worldbank.org>
Diff between blackmarbler versions 0.1.2 dated 2024-01-10 and 0.2.0 dated 2024-04-26
DESCRIPTION | 13 +- MD5 | 15 +-- NAMESPACE | 4 R/blackmarbler.R | 259 ++++++++++++++++++++++++++++++++++-------------------- README.md | 47 ++++----- man/bm_extract.Rd | 12 +- man/bm_raster.Rd | 12 +- tests |only 8 files changed, 226 insertions(+), 136 deletions(-)
Title: Fit Hill Dose Response Models
Description: Evaluate, fit, and analyze Hill dose response models (Goutelle et
al., 2008 <doi:10.1111/j.1472-8206.2008.00633.x>), also sometimes referred
to as four-parameter log-logistic models. Includes tools to invert Hill
models, select models based on the Akaike information criterion
(Akaike, 1974 <doi:10.1109/TAC.1974.1100705>) or Bayesian information
criterion (Schwarz, 1978 <https://www.jstor.org/stable/2958889>), and
construct bootstrapped confidence intervals both
on the Hill model parameters and values derived from the Hill model
parameters.
Author: Anang Shelat [aut],
Nathaniel Twarog [aut, cre]
Maintainer: Nathaniel Twarog <nathaniel.twarog@stjude.org>
Diff between basicdrm versions 0.1.0 dated 2024-02-16 and 0.3.0 dated 2024-04-26
DESCRIPTION | 6 - MD5 | 18 +-- NAMESPACE | 4 R/bestHillModel.R | 57 ++++++++- R/bootHillModel.R | 2 R/boundedOptimize.R | 6 - R/fitHillModel.R | 112 ++++++++++++++---- R/hillModel.R | 278 +++++++++++++++++++++++------------------------ man/findBestHillModel.Rd | 24 +++- man/fitHillModel.Rd | 27 +++- 10 files changed, 330 insertions(+), 204 deletions(-)
Title: Methods for Fast Multiple Change-Point/Break-Point Detection and
Estimation
Description: A developing software suite for multiple change-point and change-point-type feature detection/estimation (data segmentation) in data sequences.
Author: Andreas Anastasiou [aut],
Yining Chen [aut, cre],
Haeran Cho [aut],
Piotr Fryzlewicz [aut]
Maintainer: Yining Chen <y.chen101@lse.ac.uk>
Diff between breakfast versions 2.3 dated 2022-10-18 and 2.4 dated 2024-04-26
breakfast-2.3/breakfast/man/dup.merge.Rd |only breakfast-2.4/breakfast/DESCRIPTION | 15 breakfast-2.4/breakfast/MD5 | 88 breakfast-2.4/breakfast/NAMESPACE | 6 breakfast-2.4/breakfast/R/IDETECT.R | 1018 ++ breakfast-2.4/breakfast/R/IDETECT_seq.R | 191 breakfast-2.4/breakfast/R/NOT.R | 39 breakfast-2.4/breakfast/R/RcppExports.R | 66 breakfast-2.4/breakfast/R/TGUH.R | 349 - breakfast-2.4/breakfast/R/WBS.R | 48 breakfast-2.4/breakfast/R/WBS2.R | 34 breakfast-2.4/breakfast/R/breakfast-package.R | 20 breakfast-2.4/breakfast/R/fixednum.R |only breakfast-2.4/breakfast/R/ic.R | 56 breakfast-2.4/breakfast/R/local_prune.R | 44 breakfast-2.4/breakfast/R/main.R | 228 breakfast-2.4/breakfast/R/misc.R | 268 breakfast-2.4/breakfast/R/sdll.R | 107 breakfast-2.4/breakfast/R/thresholding.R | 154 breakfast-2.4/breakfast/R/tools.R | 6 breakfast-2.4/breakfast/R/wemgsc.R |only breakfast-2.4/breakfast/R/zzz.R | 2 breakfast-2.4/breakfast/build/vignette.rds |binary breakfast-2.4/breakfast/inst/doc/breakfast-vignette.R | 12 breakfast-2.4/breakfast/inst/doc/breakfast-vignette.Rmd | 5162 ++++++++------- breakfast-2.4/breakfast/inst/doc/breakfast-vignette.html | 4667 +++++++++++-- breakfast-2.4/breakfast/man/breakfast-package.Rd | 18 breakfast-2.4/breakfast/man/breakfast.Rd | 84 breakfast-2.4/breakfast/man/model.fixednum.Rd |only breakfast-2.4/breakfast/man/model.gsa.Rd |only breakfast-2.4/breakfast/man/model.ic.Rd | 17 breakfast-2.4/breakfast/man/model.lp.Rd | 14 breakfast-2.4/breakfast/man/model.sdll.Rd | 31 breakfast-2.4/breakfast/man/model.thresh.Rd | 30 breakfast-2.4/breakfast/man/plot.breakfast.cpts.Rd | 2 breakfast-2.4/breakfast/man/print.breakfast.cpts.Rd | 2 breakfast-2.4/breakfast/man/sol.idetect.Rd | 24 breakfast-2.4/breakfast/man/sol.idetect_seq.Rd | 20 breakfast-2.4/breakfast/man/sol.not.Rd | 10 breakfast-2.4/breakfast/man/sol.tguh.Rd | 7 breakfast-2.4/breakfast/man/sol.wbs.Rd | 13 breakfast-2.4/breakfast/man/sol.wbs2.Rd | 9 breakfast-2.4/breakfast/man/sol.wcm.Rd |only breakfast-2.4/breakfast/src/RcppExports.cpp | 95 breakfast-2.4/breakfast/src/contrasts.c | 4 breakfast-2.4/breakfast/src/exhaust_bic.cpp | 17 breakfast-2.4/breakfast/src/not_wrapper.cpp | 1 breakfast-2.4/breakfast/vignettes/breakfast-vignette.Rmd | 5162 ++++++++------- 48 files changed, 11699 insertions(+), 6441 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-16 2.3.2
2023-06-29 2.3.1
Title: Functions for Tidy Analysis and Generation of Random Data
Description: To make it easy to generate random numbers based upon the underlying stats
distribution functions. All data is returned in a tidy and structured
format making working with the data simple and straight forward. Given that the
data is returned in a tidy 'tibble' it lends itself to working with the rest of the
'tidyverse'.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between TidyDensity versions 1.3.0 dated 2024-01-09 and 1.4.0 dated 2024-04-26
DESCRIPTION | 12 MD5 | 182 +++-- NAMESPACE | 19 NEWS.md | 21 R/00_global_variables.R | 2 R/autoplot-combined-dist.R | 2 R/autoplot-four-graphs.R | 2 R/autoplot-multi-dist.R | 2 R/combine-multi-single-dist-tbl.R | 31 R/est-param-chisq.R |only R/utils-aic-beta.R |only R/utils-aic-binomial.R |only R/utils-aic-cauchy.R |only R/utils-aic-chisq.R |only R/utils-aic-exponential.R |only R/utils-aic-gamma.R |only R/utils-aic-geometric.R |only R/utils-aic-hypergeometric.R |only R/utils-aic-logistic.R |only R/utils-aic-lognormal.R |only R/utils-aic-normal.R |only R/utils-aic-pareto.R |only R/utils-aic-poisson.R |only R/utils-aic-uniform.R |only R/utils-aic-weibull.R |only R/utils-check-dupe-rows.R |only R/utils-distribution-comparison.R | 698 +++++++++++--------- R/utils-mcmc-sampling.R |only R/utils-quantile-normalize.R |only README.md | 24 inst/doc/getting-started.html | 40 - man/check_duplicate_rows.Rd |only man/convert_to_ts.Rd | 21 man/figures/README-more_than_nine_simulations-1.png |binary man/figures/README-more_than_nine_simulations-2.png |binary man/figures/README-more_than_nine_simulations-3.png |binary man/figures/README-more_than_nine_simulations-4.png |binary man/figures/README-plot_density-1.png |binary man/figures/README-plot_density-2.png |binary man/figures/README-plot_density-3.png |binary man/figures/README-plot_density-4.png |binary man/quantile_normalize.Rd |only man/tidy_beta.Rd | 4 man/tidy_burr.Rd | 4 man/tidy_cauchy.Rd | 4 man/tidy_chisquare.Rd | 5 man/tidy_combined_autoplot.Rd | 2 man/tidy_distribution_comparison.Rd | 5 man/tidy_exponential.Rd | 4 man/tidy_f.Rd | 4 man/tidy_four_autoplot.Rd | 2 man/tidy_gamma.Rd | 4 man/tidy_generalized_beta.Rd | 4 man/tidy_generalized_pareto.Rd | 6 man/tidy_geometric.Rd | 4 man/tidy_inverse_burr.Rd | 4 man/tidy_inverse_exponential.Rd | 4 man/tidy_inverse_gamma.Rd | 4 man/tidy_inverse_normal.Rd | 4 man/tidy_inverse_pareto.Rd | 6 man/tidy_inverse_weibull.Rd | 4 man/tidy_logistic.Rd | 4 man/tidy_lognormal.Rd | 4 man/tidy_mcmc_sampling.Rd |only man/tidy_multi_dist_autoplot.Rd | 2 man/tidy_multi_single_dist.Rd | 12 man/tidy_normal.Rd | 4 man/tidy_paralogistic.Rd | 4 man/tidy_pareto.Rd | 2 man/tidy_pareto1.Rd | 2 man/tidy_t.Rd | 2 man/tidy_triangular.Rd | 2 man/tidy_uniform.Rd | 4 man/tidy_weibull.Rd | 4 man/tidy_zero_truncated_geometric.Rd | 4 man/util_bernoulli_param_estimate.Rd | 1 man/util_beta_aic.Rd |only man/util_beta_param_estimate.Rd | 1 man/util_binomial_aic.Rd |only man/util_binomial_param_estimate.Rd | 1 man/util_burr_param_estimate.Rd | 1 man/util_cauchy_aic.Rd |only man/util_cauchy_param_estimate.Rd | 1 man/util_chisq_aic.Rd |only man/util_chisquare_param_estimate.Rd |only man/util_chisquare_stats_tbl.Rd | 3 man/util_exponential_aic.Rd |only man/util_exponential_param_estimate.Rd | 1 man/util_gamma_aic.Rd |only man/util_gamma_param_estimate.Rd | 1 man/util_geometric_aic.Rd |only man/util_geometric_param_estimate.Rd | 1 man/util_hypergeometric_aic.Rd |only man/util_hypergeometric_param_estimate.Rd | 1 man/util_logistic_aic.Rd |only man/util_logistic_param_estimate.Rd | 1 man/util_lognormal_aic.Rd |only man/util_lognormal_param_estimate.Rd | 1 man/util_negative_binomial_param_estimate.Rd | 1 man/util_normal_aic.Rd |only man/util_normal_param_estimate.Rd | 1 man/util_pareto_aic.Rd |only man/util_pareto_param_estimate.Rd | 3 man/util_pareto_stats_tbl.Rd | 2 man/util_poisson_aic.Rd |only man/util_poisson_param_estimate.Rd | 1 man/util_triangular_param_estimate.Rd | 1 man/util_uniform_aic.Rd |only man/util_uniform_param_estimate.Rd | 1 man/util_weibull_aic.Rd |only man/util_weibull_param_estimate.Rd | 1 111 files changed, 727 insertions(+), 482 deletions(-)
Title: Test Helpers for 'httr2'
Description: Testing and documenting code that communicates with remote servers
can be painful. This package helps with writing tests for packages that
use 'httr2'. It enables testing all of the logic
on the R sides of the API without requiring access to the
remote service, and it also allows recording real API responses to use as
test fixtures. The ability to save responses and load them offline also
enables writing vignettes and other dynamic documents that can be
distributed without access to a live server.
Author: Neal Richardson [aut, cre] ,
Jonathan Keane [ctb],
Maelle Salmon [ctb]
Maintainer: Neal Richardson <neal.p.richardson@gmail.com>
Diff between httptest2 versions 1.0.0 dated 2023-11-07 and 1.1.0 dated 2024-04-26
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/capture-requests.R | 13 +++++++++---- man/httptest2.Rd | 2 +- tests/testthat/test-capture-requests.R | 7 +++++++ 6 files changed, 31 insertions(+), 14 deletions(-)
Title: Helper Functions for Structural Equation Modeling
Description: An assortment of helper functions for doing structural equation
modeling, mainly by 'lavaan' for now. Most of them are time-saving functions
for common tasks in doing structural equation modeling and reading the
output. This package is not for functions that implement advanced statistical
procedures. It is a light-weight package for simple functions that do simple
tasks conveniently, with as few dependencies as possible.
Author: Shu Fai Cheung [aut, cre]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between semhelpinghands versions 0.1.10 dated 2024-03-12 and 0.1.11 dated 2024-04-26
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 13 +++++++++++++ R/ptable_to_syntax.R | 2 +- R/standardizedSolution_boot_ci.R | 4 +--- README.md | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/semhelpinghands.html | 11 ++++++++--- man/ptable_to_syntax.Rd | 2 +- tests/testthat/test-ptable_to_syntax.R | 4 ++-- tests/testthat/test-ptable_to_syntax_incomplete.R | 4 ++-- 12 files changed, 43 insertions(+), 27 deletions(-)
More information about semhelpinghands at CRAN
Permanent link
Title: R Analyzer for Large-Scale Assessments
Description: Prepare and analyze data from large-scale assessments and surveys with
complex sampling and assessment design (see 'Rutkowski', 2010
<doi:10.3102/0013189X10363170>). Such studies are, for example,
international assessments like 'TIMSS', 'PIRLS' and 'PISA'. A graphical
interface is available for the non-technical user.The package includes
functions to covert the original data from 'SPSS' into 'R' data sets
keeping the user-defined missing values, merge data from different
respondents and/or countries, generate variable dictionaries, modify
data, produce descriptive statistics (percentages, means, percentiles,
benchmarks) and multivariate statistics (correlations, linear
regression, binary logistic regression). The number of supported
studies and analysis types will increase in future. For a general
presentation of the package, see 'Mirazchiyski', 2021a
(<doi:10.1186/s40536-021-00114-4>). For detailed technical aspects of the
package, see 'Mirazchiyski', 2021b (<doi:10.339 [...truncated...]
Author: Plamen V. Mirazchiyski [aut, cre],
INERI [aut]
Maintainer: Plamen V. Mirazchiyski <plamen.mirazchiyski@ineri.org>
Diff between RALSA versions 1.4.0 dated 2024-02-02 and 1.4.5 dated 2024-04-26
DESCRIPTION | 8 MD5 | 26 NEWS.md | 52 R/common.r | 4 R/lsa.bench.r | 4 R/lsa.bin.log.reg.r | 1250 +-- R/lsa.convert.data.r | 3 R/lsa.convert.data2.r | 3 R/lsa.crosstabs.r | 2 R/lsa.lin.reg.r | 1238 +-- R/lsa.pcts.means.r | 2 R/lsa.prctls.r | 4 inst/shiny/GUI/server.r |17333 ++++++++++++++++++++++++------------------------ inst/shiny/GUI/ui.r | 1344 ++- 14 files changed, 10787 insertions(+), 10486 deletions(-)
Title: Partitioning the Drivers of Stability of Ecological Communities
Description: Contains the basic functions to apply the unified framework
for partitioning the drivers of stability of ecological communities.
Segrestin et al. (2024) <doi:10.1111/geb.13828>.
Author: Jules Segrestin [aut, cre, cph]
Maintainer: Jules Segrestin <jsegrestin@gmail.com>
Diff between comstab versions 0.0.2 dated 2024-03-14 and 0.0.3 dated 2024-04-26
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md | 6 ++++++ R/partitionR.R | 36 ++++++++++++++++++++++++------------ inst |only man/partitionR.Rd | 2 +- 6 files changed, 39 insertions(+), 20 deletions(-)
Title: Affinity Propagation Clustering
Description: Implements Affinity Propagation clustering introduced by Frey and
Dueck (2007) <DOI:10.1126/science.1136800>. The algorithms are largely
analogous to the 'Matlab' code published by Frey and Dueck.
The package further provides leveraged affinity propagation and an
algorithm for exemplar-based agglomerative clustering that can also be
used to join clusters obtained from affinity propagation. Various
plotting functions are available for analyzing clustering results.
Author: Ulrich Bodenhofer [aut, cre],
Johannes Palme [ctb],
Chrats Melkonian [ctb],
Andreas Kothmeier [aut],
Nikola Kostic [ctb]
Maintainer: Ulrich Bodenhofer <ulrich@bodenhofer.com>
Diff between apcluster versions 1.4.12 dated 2024-04-19 and 1.4.13 dated 2024-04-26
DESCRIPTION | 8 +++--- MD5 | 52 +++++++++++++++++++++-------------------- README.md |only TODO |only inst/CITATION | 4 +-- inst/NEWS | 3 ++ inst/doc/apcluster.Rnw | 2 - inst/doc/apcluster.pdf |binary man/APResult-class.Rd | 7 ++--- man/AggExResult-class.Rd | 5 +-- man/ExClust-class.Rd | 5 +-- man/aggExCluster-methods.Rd | 5 +-- man/apcluster-methods.Rd | 7 ++--- man/apcluster-package.Rd | 5 +-- man/apclusterDemo.Rd | 5 +-- man/apclusterK-methods.Rd | 5 +-- man/apclusterL-methods.Rd | 5 +-- man/coerce-methods.Rd | 5 +-- man/conversions.Rd | 5 +-- man/cutree-methods.Rd | 5 +-- man/heatmap-methods.Rd | 5 +-- man/labels-methods.Rd | 5 +-- man/plot-methods.Rd | 5 +-- man/preferenceRange-methods.Rd | 5 +-- man/show-methods.Rd | 5 +-- man/similarities.Rd | 5 +-- man/sort-methods.Rd | 5 +-- vignettes/apcluster.Rnw | 2 - 28 files changed, 78 insertions(+), 92 deletions(-)
Title: Robust Rank Correlation Coefficient and Test
Description: Provides the robust gamma rank correlation coefficient as introduced by
Bodenhofer, Krone, and Klawonn (2013) <DOI:10.1016/j.ins.2012.11.026>
along with a permutation-based rank correlation test.
The rank correlation coefficient and the test are explicitly
designed for dealing with noisy numerical data.
Author: Martin Krone [aut], Ulrich Bodenhofer [aut,cre]
Maintainer: Ulrich Bodenhofer <ulrich@bodenhofer.com>
Diff between rococo versions 1.1.8 dated 2024-04-22 and 1.1.9 dated 2024-04-26
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- build/partial.rdb |only inst/NEWS | 3 +++ inst/doc/rococo.pdf |binary man/RococoTestResult-class.Rd | 10 +++++----- man/gauss.cor.Rd | 11 ++++++----- man/gauss.cor.test-methods.Rd | 11 ++++++----- man/rococo.Rd | 10 +++++----- man/rococo.test-methods.Rd | 8 ++++---- 10 files changed, 42 insertions(+), 36 deletions(-)
Title: QTL Mapping and Hotspots Detection
Description: For QTL mapping, this package comprises several functions designed to execute diverse
tasks, such as simulating or analyzing data, calculating significance thresholds, and
visualizing QTL mapping results. The single-QTL or multiple-QTL method, which enables
the fitting and comparison of various statistical models, is employed to analyze the
data for estimating QTL parameters. The models encompass linear regression, permutation
tests, normal mixture models, and truncated normal mixture models. The Gaussian stochastic
process is utilized to compute significance thresholds for QTL detection on a genetic
linkage map within experimental populations. Two types of data, complete genotyping, and
selective genotyping data from various experimental populations, including backcross, F2,
recombinant inbred (RI) populations, and advanced intercrossed (AI) populations, are
considered in the QTL mapping analysis. For QTL hotspot detection, statistical methods can
be developed based on either utilizin [...truncated...]
Author: Ping-Yuan Chung [cre],
Chen-Hung Kao [aut],
Y.-T. Guo [aut],
H.-N. Ho [aut],
H.-I. Lee [aut],
P.-Y. Wu [aut],
M.-H. Yang [aut],
M.-H. Zeng [aut]
Maintainer: Ping-Yuan Chung <pychung@webmail.stat.sinica.edu.tw>
Diff between QTLEMM versions 1.5.2 dated 2024-03-13 and 1.5.3 dated 2024-04-26
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/EQF.permu.R | 8 ++++---- R/EQF.plot.R | 6 +++--- R/LOD.QTLdetect.R | 5 ++--- R/Qhot.R | 2 +- inst/extdata/LODexample.RDATA |binary man/EQF.permu.Rd | 2 +- man/LOD.QTLdetect.Rd | 2 +- 9 files changed, 24 insertions(+), 25 deletions(-)
Title: Fast Change Point Detection via Sequential Gradient Descent
Description: Implements fast change point detection algorithm based on the
paper "Sequential Gradient Descent and Quasi-Newton's Method for
Change-Point Analysis" by Xianyang Zhang, Trisha Dawn
<https://proceedings.mlr.press/v206/zhang23b.html>. The algorithm is
based on dynamic programming with pruning and sequential gradient
descent. It is able to detect change points a magnitude faster than
the vanilla Pruned Exact Linear Time(PELT). The package includes
examples of linear regression, logistic regression, Poisson
regression, penalized linear regression data, and whole lot more
examples with custom cost function in case the user wants to use their
own cost function.
Author: Xingchi Li [aut, cre, cph] ,
Xianyang Zhang [aut, cph]
Maintainer: Xingchi Li <anthony.li@stat.tamu.edu>
Diff between fastcpd versions 0.14.1 dated 2024-04-18 and 0.14.3 dated 2024-04-26
DESCRIPTION | 9 MD5 | 123 +++--- NEWS.md | 8 R/fastcpd.R | 2 R/fastcpd_class.R | 13 inst/doc/comparison-packages.html | 30 + inst/doc/comparison-pelt.R | 4 inst/doc/comparison-pelt.Rmd | 2 inst/doc/comparison-pelt.html | 108 ++--- man/bitcoin.Rd | 73 +-- man/fastcpd.Rd | 211 +++++----- man/fastcpd_binomial.Rd | 26 - man/fastcpd_lasso.Rd | 107 ++--- man/fastcpd_lm.Rd | 54 +- man/fastcpd_mean.Rd | 20 man/fastcpd_meanvariance.Rd | 53 +- man/fastcpd_poisson.Rd | 32 - man/fastcpd_variance.Rd | 26 - man/plot.Rd | 32 - man/transcriptome.Rd | 58 +- man/uk_seatbelts.Rd | 76 ++- man/variance_lm.Rd | 53 +- man/variance_mean.Rd | 18 man/well_log.Rd | 47 +- src/fastcpd_class_cost.cc | 6 src/fastcpd_class_nll.cc |only src/fastcpd_class_private.cc | 238 ----------- src/fastcpd_class_public.cc | 265 ------------- src/fastcpd_classes.h | 112 ++++- src/fastcpd_types.h | 9 src/test-functions.cc | 14 tests/testthat/examples/data-bitcoin.txt | 73 +-- tests/testthat/examples/data-transcriptome.txt | 58 +- tests/testthat/examples/data-uk_seatbelts.R | 76 ++- tests/testthat/examples/data-well_log-quantile.txt | 47 +- tests/testthat/examples/fastcpd_1.R | 32 - tests/testthat/examples/fastcpd_2.R | 107 ++--- tests/testthat/examples/fastcpd_4.txt | 70 +-- tests/testthat/examples/fastcpd_binomial.R | 26 - tests/testthat/examples/fastcpd_lasso.txt | 107 ++--- tests/testthat/examples/fastcpd_lm.R | 54 +- tests/testthat/examples/fastcpd_mean.R | 20 tests/testthat/examples/fastcpd_meanvariance_1.R | 27 - tests/testthat/examples/fastcpd_meanvariance_2.R | 26 - tests/testthat/examples/fastcpd_poisson.txt | 32 - tests/testthat/examples/fastcpd_variance_2.R | 26 - tests/testthat/examples/plot.R | 32 - tests/testthat/examples/variance_lm.R | 53 +- tests/testthat/examples/variance_mean.R | 18 tests/testthat/test-examples-fastcpd_1.R | 1 tests/testthat/test-examples-fastcpd_2.R | 2 tests/testthat/test-examples-fastcpd_3.R | 3 tests/testthat/test-examples-fastcpd_binomial.R | 1 tests/testthat/test-examples-fastcpd_mean-time_1.R | 2 tests/testthat/test-examples-fastcpd_mean-time_2.R | 2 tests/testthat/test-examples-fastcpd_mean-time_3.R | 2 tests/testthat/test-examples-fastcpd_meanvariance-time_1.R | 2 tests/testthat/test-examples-fastcpd_meanvariance-time_2.R | 2 tests/testthat/test-examples-fastcpd_variance-time_1.R | 2 tests/testthat/test-examples-fastcpd_variance-time_2.R | 2 tests/testthat/test-fastcpd-class.R | 4 tests/testthat/test-vignettes-comparison-pelt.R | 10 vignettes/comparison-pelt.Rmd | 2 63 files changed, 1271 insertions(+), 1479 deletions(-)
Title: Yatchew (1997), De Chaisemartin & D'Haultfoeuille (2024)
Linearity Test
Description: Test of linearity originally proposed by Yatchew (1997) <doi:10.1016/S0165-1765(97)00218-8> and improved by de Chaisemartin & D'Haultfoeuille (2024) <doi:10.2139/ssrn.4284811> to be robust under heteroskedasticity.
Author: Diego Ciccia [aut, cre],
Felix Knau [aut],
Doulo Sow [aut],
Clement de Chaisemartin [aut],
Xavier D'Haultfoeuille [aut]
Maintainer: Diego Ciccia <diego.ciccia@sciencespo.fr>
Diff between YatchewTest versions 1.0.0 dated 2024-04-04 and 1.0.2 dated 2024-04-26
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- R/print.R | 16 ++++++++-------- R/yatchew_test.R | 20 +++++++++++++------- man/yatchew_test.Rd | 2 +- man/yatchew_test.data.frame.Rd | 16 +++++++++++----- 6 files changed, 44 insertions(+), 32 deletions(-)
Title: Image Processing Library Based on 'CImg'
Description: Fast image processing for images in up to 4 dimensions (two spatial
dimensions, one time/depth dimension, one colour dimension). Provides most
traditional image processing tools (filtering, morphology, transformations,
etc.) as well as various functions for easily analysing image data using R. The
package wraps 'CImg', <http://cimg.eu>, a simple, modern C++ library for image
processing.
Author: Simon Barthelme [aut],
David Tschumperle [ctb],
Jan Wijffels [ctb],
Haz Edine Assemlal [ctb],
Shota Ochi [ctb],
Aaron Robotham [cre],
Rodrigo Tobar [ctb]
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between imager versions 0.45.8 dated 2024-02-20 and 1.0.1 dated 2024-04-26
DESCRIPTION | 18 MD5 | 18 R/datasets.R | 2 inst/doc/gettingstarted.html | 6 inst/doc/pixsets.html | 4 inst/include/CImg.h |17950 +++++++++++++++++++++++++++--------------- man/boats.Rd | 2 src/Makevars.in | 1 src/Makevars.ucrt | 14 tests/testthat/test_cpp_api.R | 2 10 files changed, 11629 insertions(+), 6388 deletions(-)
Title: Linear and Nonlinear Methods for Analyzing Daily and Monthly
Dendroclimatological Data
Description: Provides novel dendroclimatological methods, primarily used by the
Tree-ring research community. There are four core functions. The first one is
daily_response(), which finds the optimal sequence of days that are related
to one or more tree-ring proxy records. Similar function is daily_response_seascorr(),
which implements partial correlations in the analysis of daily response functions.
For the enthusiast of monthly data, there is monthly_response() function.
The last core function is compare_methods(), which effectively compares several
linear and nonlinear regression algorithms on the task of climate reconstruction.
Author: Jernej Jevsenak [aut, cre]
Maintainer: Jernej Jevsenak <jernej.jevsenak@gmail.com>
Diff between dendroTools versions 1.2.11 dated 2024-01-25 and 1.2.13 dated 2024-04-26
dendroTools-1.2.11/dendroTools/R/plot_specific.R |only dendroTools-1.2.11/dendroTools/man/plot_specific.Rd |only dendroTools-1.2.13/dendroTools/DESCRIPTION | 6 dendroTools-1.2.13/dendroTools/MD5 | 68 - dendroTools-1.2.13/dendroTools/NAMESPACE | 1 dendroTools-1.2.13/dendroTools/NEWS.md | 11 dendroTools-1.2.13/dendroTools/R/calculate_metrics.R | 2 dendroTools-1.2.13/dendroTools/R/compare_methods.R | 120 +- dendroTools-1.2.13/dendroTools/R/count_ones.R | 2 dendroTools-1.2.13/dendroTools/R/daily_response.R | 550 +++++----- dendroTools-1.2.13/dendroTools/R/daily_response_seascorr.R | 359 +++--- dendroTools-1.2.13/dendroTools/R/generics.R | 6 dendroTools-1.2.13/dendroTools/R/generics2.R | 8 dendroTools-1.2.13/dendroTools/R/glimpse_daily_data.R | 8 dendroTools-1.2.13/dendroTools/R/monthly_response.R | 457 ++++---- dendroTools-1.2.13/dendroTools/R/monthly_response_seascorr.R | 283 ++--- dendroTools-1.2.13/dendroTools/R/plot_extreme.R | 76 + dendroTools-1.2.13/dendroTools/R/plot_heatmap.R | 6 dendroTools-1.2.13/dendroTools/R/round_df.R | 2 dendroTools-1.2.13/dendroTools/inst/doc/Compare_different_regression_methods.html | 4 dendroTools-1.2.13/dendroTools/inst/doc/Examples_with_daily_climate_data.R | 57 - dendroTools-1.2.13/dendroTools/inst/doc/Examples_with_daily_climate_data.Rmd | 78 - dendroTools-1.2.13/dendroTools/inst/doc/Examples_with_daily_climate_data.html | 135 -- dendroTools-1.2.13/dendroTools/man/calculate_metrics.Rd | 2 dendroTools-1.2.13/dendroTools/man/compare_methods.Rd | 82 - dendroTools-1.2.13/dendroTools/man/count_ones.Rd | 2 dendroTools-1.2.13/dendroTools/man/daily_response.Rd | 203 +-- dendroTools-1.2.13/dendroTools/man/daily_response_seascorr.Rd | 153 +- dendroTools-1.2.13/dendroTools/man/glimpse_daily_data.Rd | 8 dendroTools-1.2.13/dendroTools/man/monthly_response.Rd | 132 -- dendroTools-1.2.13/dendroTools/man/monthly_response_seascorr.Rd | 95 - dendroTools-1.2.13/dendroTools/man/plot_extreme.Rd | 8 dendroTools-1.2.13/dendroTools/man/plot_heatmap.Rd | 6 dendroTools-1.2.13/dendroTools/man/round_df.Rd | 2 dendroTools-1.2.13/dendroTools/tests/testthat/test_general.R | 62 - dendroTools-1.2.13/dendroTools/vignettes/Examples_with_daily_climate_data.Rmd | 78 - 36 files changed, 1324 insertions(+), 1748 deletions(-)
Title: Tools to Visualize CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsafvis' R-package provides a collection of R-operators for the analysis and
visualization of CM SAF NetCDF data.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre],
Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsafvis versions 1.2.3 dated 2024-01-26 and 1.2.6 dated 2024-04-26
cmsafvis-1.2.3/cmsafvis/R/cmsafvis-package.R |only cmsafvis-1.2.6/cmsafvis/DESCRIPTION | 8 cmsafvis-1.2.6/cmsafvis/MD5 | 15 cmsafvis-1.2.6/cmsafvis/NEWS.md | 13 cmsafvis-1.2.6/cmsafvis/R/quicklook.R | 233 ++++++++++---- cmsafvis-1.2.6/cmsafvis/inst/WORDLIST | 101 ++---- cmsafvis-1.2.6/cmsafvis/inst/extdata/quicklook_config.yml | 185 ++++------- cmsafvis-1.2.6/cmsafvis/man/cmsafvis-package.Rd | 13 cmsafvis-1.2.6/cmsafvis/man/quicklook.Rd | 1 9 files changed, 324 insertions(+), 245 deletions(-)
Title: Fast and Exact Computation of Gaussian Stochastic Process
Description: Implements fast and exact computation of Gaussian stochastic process with the Matern kernel using forward filtering and backward smoothing algorithm. It allows for the cases with or without a noise. See the reference: Mengyang Gu and Yanxun Xu, 2020, Journal of Computational and Graphical Statistics.
Author: Mengyang Gu [aut, cre]
Maintainer: Mengyang Gu <mengyang@pstat.ucsb.edu>
Diff between FastGaSP versions 0.5.2 dated 2021-09-02 and 0.5.3 dated 2024-04-26
CHANGELOG | 6 ++++++ DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 1 - build/partial.rdb |binary man/Get_C_R_K_Q.Rd | 1 - man/Sample_KF_post.Rd | 3 --- man/show.fgasp.Rd | 2 +- src/RcppExports.cpp | 5 +++++ 9 files changed, 26 insertions(+), 20 deletions(-)
Title: Tools for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsafops' R-package provides a collection of R-operators for the analysis and
manipulation of CM SAF NetCDF formatted data. Other CF conform NetCDF data with time,
longitude and latitude dimension should be applicable, but there is no guarantee for
an error-free application.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox& [...truncated...]
Author: Steffen Kothe [aut, cre],
Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsafops versions 1.3.0 dated 2023-09-18 and 1.4.0 dated 2024-04-26
DESCRIPTION | 8 - MD5 | 136 ++++++++++----------- NAMESPACE | 2 NEWS.md | 6 R/add_grid_info.R | 33 +++-- R/cmsaf.cat.R | 19 ++ R/map_regular.R |only R/remap.R | 12 + R/ymonmedian.R |only R/ymonx_wrapper.R | 7 - inst/WORDLIST | 200 ++++++++++++++----------------- man/acsaf_box_mergetime.Rd | 1 man/add_grid_info.Rd | 1 man/box_mergetime.Rd | 1 man/cmsaf.abs.Rd | 8 - man/cmsaf.add.Rd | 6 man/cmsaf.addc.Rd | 6 man/cmsaf.detrend.Rd | 4 man/cmsaf.div.Rd | 6 man/cmsaf.divc.Rd | 6 man/cmsaf.mk.test.Rd | 4 man/cmsaf.mul.Rd | 6 man/cmsaf.mulc.Rd | 6 man/cmsaf.regres.Rd | 4 man/cmsaf.sub.Rd | 6 man/cmsaf.subc.Rd | 6 man/cmsaf.transform.coordinate.system.Rd | 1 man/divdpm.Rd | 8 - man/extract.level.Rd | 2 man/extract.period.Rd | 2 man/levbox_mergetime.Rd | 1 man/map_regular.Rd |only man/mon.anomaly.Rd | 1 man/mon_num_above.Rd | 1 man/mon_num_below.Rd | 1 man/mon_num_equal.Rd | 1 man/monavg.Rd | 1 man/mondaymean.Rd | 1 man/monmax.Rd | 1 man/monmean.Rd | 1 man/monmin.Rd | 1 man/monpctl.Rd | 1 man/monsd.Rd | 1 man/monsum.Rd | 1 man/monvar.Rd | 1 man/muldpm.Rd | 8 - man/multimonmean.Rd | 1 man/multimonsum.Rd | 1 man/num_above.Rd | 4 man/num_below.Rd | 4 man/num_equal.Rd | 4 man/remap.Rd | 7 - man/sellonlatbox.Rd | 2 man/selmon.Rd | 2 man/selperiod.Rd | 2 man/seltime.Rd | 2 man/selyear.Rd | 2 man/timavg.Rd | 4 man/timmax.Rd | 4 man/timmean.Rd | 4 man/timmin.Rd | 4 man/timpctl.Rd | 4 man/timsd.Rd | 4 man/timsum.Rd | 4 man/ymonmax.Rd | 1 man/ymonmean.Rd | 1 man/ymonmedian.Rd |only man/ymonmin.Rd | 1 man/ymonsd.Rd | 1 man/ymonsum.Rd | 1 tests/testthat/test_cmsaf.cat.R | 8 - 71 files changed, 335 insertions(+), 266 deletions(-)
Title: Visualizing Association Rules and Frequent Itemsets
Description: Extends package 'arules' with various visualization techniques for association rules and itemsets. The package also includes several interactive visualizations for rule exploration. Michael Hahsler (2017) <doi:10.32614/RJ-2017-047>.
Author: Michael Hahsler [aut, cre, cph]
,
Giallanza Tyler [ctb],
Sudheer Chelluboina [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arulesViz versions 1.5-2 dated 2023-03-07 and 1.5.3 dated 2024-04-26
arulesViz-1.5-2/arulesViz/R/groupedmatrix.R |only arulesViz-1.5-2/arulesViz/R/matrix.R |only arulesViz-1.5-2/arulesViz/man/plot.Rd |only arulesViz-1.5.3/arulesViz/DESCRIPTION | 24 arulesViz-1.5.3/arulesViz/MD5 | 82 - arulesViz-1.5.3/arulesViz/NAMESPACE | 65 - arulesViz-1.5.3/arulesViz/NEWS.md | 7 arulesViz-1.5.3/arulesViz/R/AAA_arulesViz-package.R |only arulesViz-1.5.3/arulesViz/R/check_installed.R | 36 arulesViz-1.5.3/arulesViz/R/colors.R | 12 arulesViz-1.5.3/arulesViz/R/doubledecker.R | 53 arulesViz-1.5.3/arulesViz/R/gInteraction.R | 236 ++- arulesViz-1.5.3/arulesViz/R/gPlots.R | 244 ++-- arulesViz-1.5.3/arulesViz/R/ggplot2.R | 187 +-- arulesViz-1.5.3/arulesViz/R/ggraph.R | 195 +-- arulesViz-1.5.3/arulesViz/R/graph.R | 105 + arulesViz-1.5.3/arulesViz/R/igraph.R | 211 +-- arulesViz-1.5.3/arulesViz/R/inspectDT.R | 87 + arulesViz-1.5.3/arulesViz/R/limit_associations.R | 20 arulesViz-1.5.3/arulesViz/R/map.R | 39 arulesViz-1.5.3/arulesViz/R/paracoord.R | 183 +-- arulesViz-1.5.3/arulesViz/R/parameters.R | 61 - arulesViz-1.5.3/arulesViz/R/plot.R | 596 ++++++++-- arulesViz-1.5.3/arulesViz/R/plotly.R | 228 ++- arulesViz-1.5.3/arulesViz/R/ruleExplorer.R | 414 +++--- arulesViz-1.5.3/arulesViz/R/rules2groupedmatrix.R |only arulesViz-1.5.3/arulesViz/R/rules2matrix.R |only arulesViz-1.5.3/arulesViz/R/saveAsGraph.R | 62 - arulesViz-1.5.3/arulesViz/R/scatterplot.R | 293 ++-- arulesViz-1.5.3/arulesViz/R/visNetwork.R | 84 - arulesViz-1.5.3/arulesViz/README.md | 60 - arulesViz-1.5.3/arulesViz/build/partial.rdb |binary arulesViz-1.5.3/arulesViz/build/vignette.rds |binary arulesViz-1.5.3/arulesViz/inst/README_files/graph-1.png |binary arulesViz-1.5.3/arulesViz/inst/README_files/scatterplot-1.png |binary arulesViz-1.5.3/arulesViz/inst/doc/arulesViz.R | 22 arulesViz-1.5.3/arulesViz/inst/doc/arulesViz.Rnw | 10 arulesViz-1.5.3/arulesViz/inst/doc/arulesViz.pdf |binary arulesViz-1.5.3/arulesViz/man/arulesViz-package.Rd |only arulesViz-1.5.3/arulesViz/man/inspectDT.Rd | 66 - arulesViz-1.5.3/arulesViz/man/plot_arulesViz.Rd |only arulesViz-1.5.3/arulesViz/man/ruleExplorer.Rd | 56 arulesViz-1.5.3/arulesViz/man/rules2matrix.Rd | 85 - arulesViz-1.5.3/arulesViz/man/saveAsGraph.Rd | 62 - arulesViz-1.5.3/arulesViz/tests |only arulesViz-1.5.3/arulesViz/vignettes/arulesViz.Rnw | 10 46 files changed, 2398 insertions(+), 1497 deletions(-)
Title: Simulate and Conduct Dose-Escalation Phase I Studies
Description: Two Phase I designs are implemented in the package: the classical 3+3 and the Continual Reassessment Method (<doi:10.2307/2531628>). Simulations tools are also available to estimate the operating characteristics of the methods with several user-dependent options.
Author: Benjamin Esterni with contribution from Baboukar Mane
Maintainer: Christophe Zemmour <christophe.zemmour@gmail.com>
Diff between UBCRM versions 1.0.2 dated 2022-05-16 and 1.0.3 dated 2024-04-26
DESCRIPTION | 13 ++++++------- MD5 | 30 +++++++++++++++--------------- inst/NEWS | 12 +++++++++++- man/CreData.Rd | 8 ++++---- man/Crm.Rd | 8 ++++---- man/Lp.Rd | 33 ++++----------------------------- man/UBCRM-package.Rd | 17 ++++------------- man/aip.Rd | 8 ++++---- man/fp.Rd | 8 ++++---- man/psip.Rd | 8 ++++---- man/sim3p3.Rd | 8 ++++---- man/simCrm.Rd | 8 ++++---- man/ssim3p3.Rd | 8 ++++---- man/ssimCrm.Rd | 8 ++++---- man/troisPtrois.Rd | 8 ++++---- man/updata.Rd | 8 ++++---- 16 files changed, 84 insertions(+), 109 deletions(-)
Title: Sustainable Transport Planning
Description: Tools for transport planning with an emphasis on spatial
transport data and non-motorized modes.
The package was originally developed to support the 'Propensity to Cycle Tool', a publicly available strategic cycle network planning tool
(Lovelace et al. 2017) <doi:10.5198/jtlu.2016.862>, but has since been
extended to support public transport routing and accessibility analysis
(Moreno-Monroy et al. 2017) <doi:10.1016/j.jtrangeo.2017.08.012> and
routing with locally hosted routing engines such as 'OSRM'
(Lowans et al. 2023) <doi:10.1016/j.enconman.2023.117337>.
The main functions are for creating and manipulating geographic "desire
lines" from origin-destination (OD) data (building on the 'od'
package); calculating routes on the transport network locally and via
interfaces to routing services such as <https://cyclestreets.net/>
(Desjardins et al. 2021) <doi:10.1007/s11116-021-10197-1>;
and calculating route segment attributes such as bearing. The package
imp [...truncated...]
Author: Robin Lovelace [aut, cre] ,
Richard Ellison [aut],
Malcolm Morgan [aut] ,
Barry Rowlingson [ctb],
Nick Bearman [ctb],
Nikolai Berkoff [ctb],
Scott Chamberlain [rev] ,
Mark Padgham [ctb],
Zhao Wang [ctb] ,
Andrea Gilardi [ctb] ,
Josiah Parry [ctb]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 1.1.2 dated 2023-09-15 and 1.2.0 dated 2024-04-26
DESCRIPTION | 50 +++- MD5 | 115 +++++----- NAMESPACE | 6 NEWS.md | 9 R/data.R | 6 R/geo_projected.R | 25 +- R/line_via.R | 20 + R/linefuns.R | 337 +++++++++++++++++++++++++------ R/rnet_boundary_points.R | 22 -- R/rnet_join.R | 226 +++++++++++--------- R/toptail.R | 2 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary data/flowlines_sf.rda |binary data/routes_fast_sf.rda |binary data/routes_slow_sf.rda |binary inst/doc/merging-route-networks.R | 81 ++++++- inst/doc/merging-route-networks.Rmd | 88 +++++++- inst/doc/merging-route-networks.html | 214 +++++++++++++++++++ inst/doc/stplanr-od.R | 46 ++-- inst/doc/stplanr-paper.R | 38 +-- inst/doc/stplanr-paper.Rmd | 2 inst/doc/stplanr-paper.html | 5 inst/doc/stplanr-parallel.R | 2 inst/doc/stplanr-route-nets.R | 62 ++--- inst/doc/stplanr-route-nets.html | 14 + inst/doc/stplanr-routing.R | 24 +- inst/doc/stplanr-routing.html | 6 inst/doc/stplanr.R | 84 +++---- inst/doc/stplanr.html | 131 ++++++++---- man/angle_diff.Rd | 2 man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/flowlines_sf.Rd | 2 man/geo_toptail.Rd | 4 man/is_linepoint.Rd | 2 man/line2df.Rd | 2 man/line2points.Rd | 2 man/line_bearing.Rd | 17 - man/line_breakup.Rd | 2 man/line_midpoint.Rd | 9 man/line_segment.Rd | 60 ++++- man/line_segment1.Rd |only man/line_via.Rd | 2 man/mats2line.Rd | 2 man/n_segments.Rd |only man/n_vertices.Rd | 4 man/onewaygeo.Rd | 2 man/points2line.Rd | 2 man/rnet_group.Rd | 2 man/rnet_join.Rd | 31 +- man/rnet_merge.Rd | 41 +++ man/rnet_subset.Rd | 6 man/routes_fast_sf.Rd | 2 man/routes_slow_sf.Rd | 2 man/toptail_buff.Rd | 2 tests/testthat/test-mats2line.R |only vignettes/merging-route-networks.Rmd | 88 +++++++- vignettes/stplanr-paper.Rmd | 2 60 files changed, 1384 insertions(+), 523 deletions(-)
Title: R and C++ Interfaces to 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides
many desirable features. This package bundles these header files for easy use by R packages
from both their R and C or C++ code. Explicit use via 'LinkingTo:' is also supported. Also
see the 'spdl' package which enhanced this package with a consistent R and C++ interface.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSpdlog versions 0.0.16 dated 2024-01-12 and 0.0.17 dated 2024-04-26
ChangeLog | 13 DESCRIPTION | 8 MD5 | 69 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 13 inst/include/spdlog/async_logger-inl.h | 12 inst/include/spdlog/common.h | 2 inst/include/spdlog/details/circular_q.h | 2 inst/include/spdlog/details/os-inl.h | 10 inst/include/spdlog/details/periodic_worker.h | 1 inst/include/spdlog/details/registry-inl.h | 31 inst/include/spdlog/details/registry.h | 16 inst/include/spdlog/details/thread_pool-inl.h | 11 inst/include/spdlog/details/thread_pool.h | 19 inst/include/spdlog/fmt/bundled/args.h | 13 inst/include/spdlog/fmt/bundled/chrono.h | 999 ++++++----- inst/include/spdlog/fmt/bundled/color.h | 132 - inst/include/spdlog/fmt/bundled/compile.h | 146 - inst/include/spdlog/fmt/bundled/core.h | 1926 +++++++++------------- inst/include/spdlog/fmt/bundled/format-inl.h | 367 +--- inst/include/spdlog/fmt/bundled/format.h | 2200 ++++++++++++++------------ inst/include/spdlog/fmt/bundled/os.h | 157 - inst/include/spdlog/fmt/bundled/ostream.h | 146 - inst/include/spdlog/fmt/bundled/printf.h | 385 ++-- inst/include/spdlog/fmt/bundled/ranges.h | 332 ++- inst/include/spdlog/fmt/bundled/std.h | 470 ++++- inst/include/spdlog/fmt/bundled/xchar.h | 106 - inst/include/spdlog/fmt/fmt.h | 6 inst/include/spdlog/mdc.h |only inst/include/spdlog/pattern_formatter-inl.h | 60 inst/include/spdlog/sinks/qt_sinks.h | 6 inst/include/spdlog/spdlog-inl.h | 10 inst/include/spdlog/spdlog.h | 8 inst/include/spdlog/stopwatch.h | 4 inst/include/spdlog/version.h | 2 36 files changed, 4142 insertions(+), 3540 deletions(-)
Title: Functions, Data Sets and Vignettes to Aid in Learning Principal
Components Analysis (PCA)
Description: Principal component analysis (PCA) is one of the most widely used data analysis techniques. This package provides a series of vignettes explaining PCA starting from basic concepts. The primary purpose is to serve as a self-study resource for anyone wishing to understand PCA better. A few convenience functions are provided as well.
Author: Bryan A. Hanson [aut, cre] ,
David T. Harvey [aut]
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between LearnPCA versions 0.2.0 dated 2022-05-01 and 0.3.4 dated 2024-04-26
DESCRIPTION | 11 + MD5 | 64 ++++++----- NAMESPACE | 4 NEWS.md | 14 ++ R/LearnPCA-package.R | 10 - R/PCsearch.R | 2 R/demo_PC_search.R | 1 build/vignette.rds |binary inst/doc/Vig_01_Start_Here.R | 6 - inst/doc/Vig_01_Start_Here.pdf |binary inst/doc/Vig_02_Conceptual_Intro_PCA.R | 6 - inst/doc/Vig_02_Conceptual_Intro_PCA.pdf |binary inst/doc/Vig_03_Step_By_Step_PCA.R | 6 - inst/doc/Vig_03_Step_By_Step_PCA.pdf |binary inst/doc/Vig_04_Scores_Loadings.R | 6 - inst/doc/Vig_04_Scores_Loadings.Rmd | 2 inst/doc/Vig_04_Scores_Loadings.pdf |binary inst/doc/Vig_05_Visualizing_PCA_3D.R | 2 inst/doc/Vig_05_Visualizing_PCA_3D.pdf |binary inst/doc/Vig_06_Math_Behind_PCA.R | 73 +++++++++---- inst/doc/Vig_06_Math_Behind_PCA.Rmd | 173 ++++++++++++++++++++++--------- inst/doc/Vig_06_Math_Behind_PCA.pdf |binary inst/doc/Vig_07_Functions_PCA.R | 8 - inst/doc/Vig_07_Functions_PCA.pdf |binary inst/doc/Vig_08_Notes.R |only inst/doc/Vig_08_Notes.Rmd |only inst/doc/Vig_08_Notes.pdf |only man/LearnPCA-package.Rd | 9 + vignettes/PCA.bib | 7 + vignettes/Vig_04_Scores_Loadings.Rmd | 2 vignettes/Vig_06_Math_Behind_PCA.Rmd | 173 ++++++++++++++++++++++--------- vignettes/Vig_08_Notes.Rmd |only vignettes/refer_to_works_consulted.md | 2 vignettes/top_matter.md | 15 +- vignettes/works_consulted.md | 1 35 files changed, 410 insertions(+), 187 deletions(-)
Title: Make, Update, and Query Binary Causal Models
Description: Users can declare binary causal models, update beliefs about causal types given data and calculate arbitrary estimands. Model definition makes use of 'dagitty' functionality. Updating is implemented in 'stan'. The approach used in 'CausalQueries' is a generalization of the 'biqq' models described in "Mixing Methods: A Bayesian Approach" (Humphreys and Jacobs, 2015, <DOI:10.1017/S0003055415000453>). The conceptual extension makes use of work on probabilistic causal models described in Pearl's Causality (Pearl, 2009, <DOI:10.1017/CBO9780511803161>).
Author: Clara Bicalho [ctb],
Jasper Cooper [ctb],
Macartan Humphreys [aut] ,
Till Tietz [aut, cre] ,
Alan Jacobs [aut],
Merlin Heidemanns [ctb],
Lily Medina [aut] ,
Julio Solis [ctb],
Georgiy Syunyaev [aut]
Maintainer: Till Tietz <ttietz2014@gmail.com>
Diff between CausalQueries versions 1.1.0 dated 2024-04-10 and 1.1.1 dated 2024-04-26
CausalQueries-1.1.0/CausalQueries/man/print.type_posterior.Rd |only CausalQueries-1.1.1/CausalQueries/DESCRIPTION | 6 CausalQueries-1.1.1/CausalQueries/MD5 | 33 +- CausalQueries-1.1.1/CausalQueries/NAMESPACE | 3 CausalQueries-1.1.1/CausalQueries/NEWS.md | 5 CausalQueries-1.1.1/CausalQueries/R/grab.R | 23 + CausalQueries-1.1.1/CausalQueries/R/methods.R | 59 ++- CausalQueries-1.1.1/CausalQueries/R/parmap.R | 3 CausalQueries-1.1.1/CausalQueries/R/set_parameter_matrix.R | 17 - CausalQueries-1.1.1/CausalQueries/R/update_model.R | 2 CausalQueries-1.1.1/CausalQueries/inst/doc/front-door.html | 28 - CausalQueries-1.1.1/CausalQueries/inst/doc/getting-started.html | 152 +++++----- CausalQueries-1.1.1/CausalQueries/inst/doc/inspecting-posteriors.html | 90 ++--- CausalQueries-1.1.1/CausalQueries/man/grab.Rd | 10 CausalQueries-1.1.1/CausalQueries/man/print.nodes.Rd | 2 CausalQueries-1.1.1/CausalQueries/man/print.parameter_mapping.Rd |only CausalQueries-1.1.1/CausalQueries/man/print.type_distribution.Rd |only CausalQueries-1.1.1/CausalQueries/tests/testthat/test_grab.R | 23 - CausalQueries-1.1.1/CausalQueries/tests/testthat/test_methods.R | 4 19 files changed, 255 insertions(+), 205 deletions(-)