Title: The Fill-Mask Association Test
Description: The Fill-Mask Association Test ('FMAT')
is an integrative and probability-based method using
Masked Language Models to measure conceptual associations
(e.g., attitudes, biases, stereotypes, social norms, cultural values)
as propositions in natural language.
Supported language models include 'BERT'
<doi:10.48550/arXiv.1810.04805> and its variants available at 'Hugging Face'
<https://huggingface.co/models?pipeline_tag=fill-mask>.
Methodological references and installation guidance are provided at
<https://psychbruce.github.io/FMAT/>.
Author: Han-Wu-Shuang Bao [aut, cre]
Maintainer: Han-Wu-Shuang Bao <baohws@foxmail.com>
Diff between FMAT versions 2024.3 dated 2024-03-22 and 2024.4 dated 2024-04-29
DESCRIPTION | 12 - MD5 | 20 +- NAMESPACE | 4 NEWS.md | 6 R/FMAT.R | 343 +++++++++++++++++++++++++++++++++++++-------------- README.md | 5 man/BERT_download.Rd | 6 man/BERT_vocab.Rd |only man/FMAT_load.Rd | 4 man/FMAT_query.Rd | 7 - man/FMAT_run.Rd | 26 +-- man/ICC_models.Rd |only 12 files changed, 303 insertions(+), 130 deletions(-)
Title: The R WINS Package
Description: Calculate the win statistics (win ratio, net benefit and win odds) for prioritized multiple endpoints, plot the win statistics and win proportions over study time if at least one time-to-event endpoint is analyzed, and simulate datasets with dependent endpoints. The package can handle any type of outcomes (continuous, ordinal, binary, time-to-event) and allow users to perform stratified analysis, inverse probability of censoring weighting (IPCW) and inverse probability of treatment weighting (IPTW) analysis.
Author: Ying Cui [aut, cre],
Bo Huang [aut]
Maintainer: Ying Cui <cuiyingbeicheng@gmail.com>
Diff between WINS versions 1.4.1 dated 2024-04-19 and 1.4.2 dated 2024-04-29
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- R/covipcw.win.stat.R | 9 ++++++--- R/get.win.stat_t.R | 9 ++++++--- R/ipcw.win.stat.R | 9 ++++++--- R/iptw.adjusted.win.stat.R | 17 ++++++++++------- R/partition_t.plot.R | 17 +++++++++++------ R/stat_t.plot.R | 20 ++++++++++++++------ R/unadjusted.win.stat.R | 9 ++++++--- R/win.stat.R | 20 +++++++++++++++----- R/win.strategy.default.R | 19 ++++++++++++++----- inst/doc/vignette.pdf |binary man/partition_t.plot.Rd | 9 +++++++-- man/stat_t.plot.Rd | 7 ++++++- man/win.stat.Rd | 7 ++++++- man/win.strategy.default.Rd | 9 ++++++--- 16 files changed, 131 insertions(+), 66 deletions(-)
Title: Power Calculation for Stepped Wedge Designs
Description: Tools for power and sample size
calculation as well as design diagnostics for
longitudinal mixed model settings, with a focus on stepped wedge designs.
All calculations are oracle estimates i.e. assume random effect variances
to be known (or guessed) in advance.
The method is introduced in Hussey and Hughes (2007) <doi:10.1016/j.cct.2006.05.007>,
extensions are discussed in Li et al. (2020) <doi:10.1177/0962280220932962>.
Author: Philipp Mildenberger [aut, cre]
,
Federico Marini [ctb]
Maintainer: Philipp Mildenberger <pmildenb@uni-mainz.de>
Diff between SteppedPower versions 0.3.4 dated 2023-09-12 and 0.3.5 dated 2024-04-29
SteppedPower-0.3.4/SteppedPower/R/SteppedPower-pkg.R |only SteppedPower-0.3.5/SteppedPower/DESCRIPTION | 8 SteppedPower-0.3.5/SteppedPower/MD5 | 32 - SteppedPower-0.3.5/SteppedPower/R/SteppedPower_PACKAGE.R |only SteppedPower-0.3.5/SteppedPower/R/construct_CovMat.R | 2 SteppedPower-0.3.5/SteppedPower/R/construct_DesMat.R | 40 +- SteppedPower-0.3.5/SteppedPower/R/helper_functions.R | 4 SteppedPower-0.3.5/SteppedPower/R/wlsPower.R | 64 +-- SteppedPower-0.3.5/SteppedPower/build/vignette.rds |binary SteppedPower-0.3.5/SteppedPower/inst/doc/Getting_Started.R | 24 - SteppedPower-0.3.5/SteppedPower/inst/doc/Getting_Started.html | 99 +++-- SteppedPower-0.3.5/SteppedPower/inst/doc/Incomplete_Designs.R | 4 SteppedPower-0.3.5/SteppedPower/inst/doc/Incomplete_Designs.html | 14 SteppedPower-0.3.5/SteppedPower/man/RandEff_to_alpha012.Rd | 2 SteppedPower-0.3.5/SteppedPower/man/SteppedPower-pkg.Rd | 3 SteppedPower-0.3.5/SteppedPower/man/compute_glsPower.Rd | 5 SteppedPower-0.3.5/SteppedPower/man/construct_CovMat.Rd | 184 +++++----- SteppedPower-0.3.5/SteppedPower/man/plot.DesMat.Rd | 8 18 files changed, 265 insertions(+), 228 deletions(-)
Title: Edit an 'Antares' Simulation
Description: Edit an 'Antares' simulation before running it : create new areas, links, thermal
clusters or binding constraints or edit existing ones. Update 'Antares' general & optimization settings.
'Antares' is an open source power system generator, more information available here : <https://antares-simulator.org/>.
Author: Tatiana Vargas [aut, cre],
Frederic Breant [aut],
Victor Perrier [aut],
Baptiste Seguinot [ctb],
Benoit Thieurmel [ctb],
Titouan Robert [ctb],
Jalal-Edine Zawam [ctb],
Etienne Sanchez [ctb],
Janus De Bondt [ctb],
Assil Mansouri [ctb],
Abdallah Mahoud [...truncated...]
Maintainer: Tatiana Vargas <tatiana.vargas@rte-france.com>
Diff between antaresEditObject versions 0.6.2 dated 2024-04-19 and 0.6.3 dated 2024-04-29
antaresEditObject-0.6.2/antaresEditObject/man/create_referential_series_type.Rd |only antaresEditObject-0.6.3/antaresEditObject/DESCRIPTION | 6 antaresEditObject-0.6.3/antaresEditObject/MD5 | 55 +- antaresEditObject-0.6.3/antaresEditObject/NAMESPACE | 1 antaresEditObject-0.6.3/antaresEditObject/NEWS.md | 28 + antaresEditObject-0.6.3/antaresEditObject/R/API-utils.R | 43 -- antaresEditObject-0.6.3/antaresEditObject/R/createArea.R | 8 antaresEditObject-0.6.3/antaresEditObject/R/createClusterST.R | 31 + antaresEditObject-0.6.3/antaresEditObject/R/editClusterST.R | 25 - antaresEditObject-0.6.3/antaresEditObject/R/removeArea.R | 101 ++--- antaresEditObject-0.6.3/antaresEditObject/R/removeCluster.R | 68 ++- antaresEditObject-0.6.3/antaresEditObject/R/removeLink.R | 61 +-- antaresEditObject-0.6.3/antaresEditObject/R/scenarioBuilder.R | 64 ++- antaresEditObject-0.6.3/antaresEditObject/R/utils.R | 63 +++ antaresEditObject-0.6.3/antaresEditObject/inst/doc/Antares_new_features_v860.html | 27 - antaresEditObject-0.6.3/antaresEditObject/inst/doc/api-variant-management.html | 27 - antaresEditObject-0.6.3/antaresEditObject/inst/doc/scenario-builder.html | 32 + antaresEditObject-0.6.3/antaresEditObject/man/create_scb_referential_series_type.Rd |only antaresEditObject-0.6.3/antaresEditObject/man/detect_pattern_in_binding_constraint.Rd |only antaresEditObject-0.6.3/antaresEditObject/man/scenario-builder.Rd | 28 + antaresEditObject-0.6.3/antaresEditObject/tests/testthat/test-RES.R | 57 ++ antaresEditObject-0.6.3/antaresEditObject/tests/testthat/test-ST.R | 59 ++- antaresEditObject-0.6.3/antaresEditObject/tests/testthat/test-createArea.R | 196 ++++++++++ antaresEditObject-0.6.3/antaresEditObject/tests/testthat/test-createCluster.R | 123 ++++++ antaresEditObject-0.6.3/antaresEditObject/tests/testthat/test-createClusterST.R | 105 +++++ antaresEditObject-0.6.3/antaresEditObject/tests/testthat/test-createDSR.R | 92 ++-- antaresEditObject-0.6.3/antaresEditObject/tests/testthat/test-createLink.R | 89 ++++ antaresEditObject-0.6.3/antaresEditObject/tests/testthat/test-createPSP.R | 124 +++--- antaresEditObject-0.6.3/antaresEditObject/tests/testthat/test-editClusterST.R | 11 antaresEditObject-0.6.3/antaresEditObject/tests/testthat/test-scenarioBuilder.R | 173 ++++++++ 30 files changed, 1331 insertions(+), 366 deletions(-)
More information about antaresEditObject at CRAN
Permanent link
Title: Multicountry Term Structure of Interest Rates Models
Description: Estimation routines for several classes of affine term structure of interest rates models. All the models are based on the single-country unspanned macroeconomic risk framework from Joslin, Priebsch, and Singleton (2014, JF) <doi:10.1111/jofi.12131>. Multicountry extensions such as the ones of Jotikasthira, Le, and Lundblad (2015, JFE) <doi:10.1016/j.jfineco.2014.09.004>, Candelon and Moura (2023, EM) <doi:10.1016/j.econmod.2023.106453>, and Candelon and Moura (Forthcoming, JFEC) <http://hdl.handle.net/2078.1/249985> are also available.
Author: Rubens Moura
Maintainer: Rubens Moura <rubens.gtmoura@gmail.com>
Diff between MultiATSM versions 0.3.5 dated 2023-11-23 and 0.3.6 dated 2024-04-29
DESCRIPTION | 14 MD5 | 48 +- R/CM_Factors.R | 6 R/CM_Factors_GVAR.R | 6 R/CM_Trade.R | 6 R/CM_Yields.R | 6 R/ForecastYields.R | 35 - build/vignette.rds |binary data/CM_Factors.rda |binary data/CM_Factors_GVAR.rda |binary data/CM_Yields.rda |binary inst/doc/Paper-Replications.R | 90 ++-- inst/doc/Paper-Replications.Rmd | 78 +-- inst/doc/Paper-Replications.html | 846 +++++++++++++++++++-------------------- inst/doc/my-vignette.R | 8 inst/doc/my-vignette.Rmd | 5 inst/doc/my-vignette.html | 782 ++++++++++++++++++------------------ man/FactorsGVAR.Rd | 6 man/RiskFactors.Rd | 6 man/TradeFlows.Rd | 6 man/Yields.Rd | 6 vignettes/Paper-Replications.Rmd | 78 +-- vignettes/build/texput.log | 4 vignettes/my-vignette.Rmd | 5 vignettes/references.bib | 7 25 files changed, 1030 insertions(+), 1018 deletions(-)
Title: Model-Based Boosting
Description: Functional gradient descent algorithm
(boosting) for optimizing general risk functions utilizing
component-wise (penalised) least squares estimates or regression
trees as base-learners for fitting generalized linear, additive
and interaction models to potentially high-dimensional data.
Models and algorithms are described in <doi:10.1214/07-STS242>,
a hands-on tutorial is available from <doi:10.1007/s00180-012-0382-5>.
The package allows user-specified loss functions and base-learners.
Author: Torsten Hothorn [cre, aut] ,
Peter Buehlmann [aut] ,
Thomas Kneib [aut] ,
Matthias Schmid [aut] ,
Benjamin Hofner [aut] ,
Fabian Otto-Sobotka [ctb] ,
Fabian Scheipl [ctb] ,
Andreas Mayr [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mboost versions 2.9-9 dated 2023-12-07 and 2.9-10 dated 2024-04-29
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 9 +++++++++ inst/doc/SurvivalEnsembles.pdf |binary inst/doc/mboost.pdf |binary inst/doc/mboost_illustrations.pdf |binary inst/doc/mboost_tutorial.pdf |binary man/baselearners.Rd | 2 +- 10 files changed, 23 insertions(+), 14 deletions(-)
Title: Spatial Visualisation of Admixture on a Projected Map
Description: Visualise admixture as pie charts on a projected map, admixture as traditional structure barplots or facet barplots, and scatter plots from genotype principal components analysis. A 'shiny' app allows users to create admixture maps interactively. Jenkins TL (2024) <doi:10.1111/1755-0998.13943>.
Author: Tom Jenkins [aut, cre, cph]
Maintainer: Tom Jenkins <tom.l.jenkins@outlook.com>
Diff between mapmixture versions 1.1.1 dated 2024-04-17 and 1.1.2 dated 2024-04-29
DESCRIPTION | 12 MD5 | 39 - NEWS.md | 10 R/app_ui.R | 2 R/func_mapmixture.R | 34 - R/func_scatter_plot.R | 1 R/func_structure_plot.R | 12 R/mod_main_plot.R | 616 +++++++++++++++--------------- README.md | 92 +++- man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-13-1.png |binary man/figures/README-unnamed-chunk-15-1.png |binary man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-19-1.png |only man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/mapmixture.Rd | 2 man/scatter_plot.Rd | 1 man/structure_plot.Rd | 6 21 files changed, 446 insertions(+), 381 deletions(-)
Title: Coloring Wildlife Distributions in Space-Time
Description: Color and visualize wildlife distributions in
space-time using raster data. In addition to enabling display of
sequential change in distributions through the use of small multiples,
'colorist' provides functions for extracting several features of
interest from a sequence of distributions and for visualizing those
features using HCL (hue-chroma-luminance) color palettes. Resulting
maps allow for "fair" visual comparison of intensity values (e.g.,
occurrence, abundance, or density) across space and time and can be
used to address questions about where, when, and how consistently a
species, group, or individual is likely to be found.
Author: Justin Schuetz [aut] ,
Matthew Strimas-Mackey [aut, cre]
,
Tom Auer [aut]
Maintainer: Matthew Strimas-Mackey <mes335@cornell.edu>
Diff between colorist versions 0.1.2 dated 2020-11-23 and 0.1.3 dated 2024-04-29
colorist-0.1.2/colorist/README.md |only colorist-0.1.2/colorist/man/figures |only colorist-0.1.3/colorist/DESCRIPTION | 12 colorist-0.1.3/colorist/MD5 | 62 - colorist-0.1.3/colorist/NAMESPACE | 1 colorist-0.1.3/colorist/NEWS.md | 4 colorist-0.1.3/colorist/R/colorist-package.R | 1 colorist-0.1.3/colorist/R/data.R | 25 colorist-0.1.3/colorist/R/legend.R | 18 colorist-0.1.3/colorist/R/map.R | 63 - colorist-0.1.3/colorist/build/vignette.rds |binary colorist-0.1.3/colorist/data/elephant_ud.rda |binary colorist-0.1.3/colorist/data/fiespa_occ.rda |binary colorist-0.1.3/colorist/data/fisher_ud.rda |binary colorist-0.1.3/colorist/inst/doc/introduction.R | 137 +-- colorist-0.1.3/colorist/inst/doc/introduction.Rmd | 15 colorist-0.1.3/colorist/inst/doc/introduction.html | 768 ++++++++++++-------- colorist-0.1.3/colorist/inst/doc/mapping.R | 18 colorist-0.1.3/colorist/inst/doc/mapping.Rmd | 16 colorist-0.1.3/colorist/inst/doc/mapping.html | 778 ++++++++++++--------- colorist-0.1.3/colorist/inst/doc/tuning.R | 176 ++-- colorist-0.1.3/colorist/inst/doc/tuning.Rmd | 12 colorist-0.1.3/colorist/inst/doc/tuning.html | 611 ++++++++++------ colorist-0.1.3/colorist/man/colorist-package.Rd | 11 colorist-0.1.3/colorist/man/elephant_ud.Rd | 6 colorist-0.1.3/colorist/man/fiespa_occ.Rd | 15 colorist-0.1.3/colorist/man/fisher_ud.Rd | 6 colorist-0.1.3/colorist/man/map_multiples.Rd | 4 colorist-0.1.3/colorist/man/map_single.Rd | 8 colorist-0.1.3/colorist/vignettes/introduction.Rmd | 15 colorist-0.1.3/colorist/vignettes/mapping.Rmd | 16 colorist-0.1.3/colorist/vignettes/tuning.Rmd | 12 32 files changed, 1636 insertions(+), 1174 deletions(-)
Title: Asymptotic Timing
Description: Computing and visualizing comparative
asymptotic timings of different algorithms and code versions.
Also includes functionality for comparing empirical timings with
expected references such as linear or quadratic,
<https://en.wikipedia.org/wiki/Asymptotic_computational_complexity>
Also includes functionality for measuring asymptotic memory and other
quantities.
Author: Toby Hocking [aut, cre]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between atime versions 2024.4.17 dated 2024-04-22 and 2024.4.23 dated 2024-04-29
DESCRIPTION | 6 +++--- MD5 | 27 +++++++++++++++------------ NAMESPACE | 2 ++ NEWS | 6 ++++++ R/atime.R | 3 +++ R/test.R |only R/versions.R | 20 ++++++++++++-------- inst/doc/Custom_Plots.html | 6 +++--- inst/doc/Custom_References.html | 18 +++++++++--------- inst/doc/Custom_Units.html | 8 ++++---- inst/doc/cum_median.html | 4 ++-- inst/doc/regex.html | 16 ++++++++-------- man/atime_pkg.Rd | 9 +++++++++ man/atime_test.Rd |only man/atime_test_list.Rd |only tests/testthat/test-CRAN.R | 7 ++++--- 16 files changed, 80 insertions(+), 52 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general
engine for big data processing, see <https://spark.apache.org/>. This
package supports connecting to local and remote Apache Spark clusters,
provides a 'dplyr' compatible back-end, and provides an interface to
Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut],
Kevin Kuo [aut] ,
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
Hossein Falaki [aut],
Lu Wang [aut],
Andy Zhang [aut],
Yitao Li [aut] ,
Jozef Hajnala [ctb],
Maciej Szymkiewicz [ctb] ,
Wil Davis [ctb],
Edgar Ruiz [au [...truncated...]
Maintainer: Edgar Ruiz <edgar@rstudio.com>
Diff between sparklyr versions 1.8.5 dated 2024-03-25 and 1.8.6 dated 2024-04-29
DESCRIPTION | 10 - MD5 | 167 ++++++++++++------------ NAMESPACE | 23 +++ NEWS.md | 21 +++ R/connection_spark.R | 1 R/core_deserialize.R | 3 R/core_invoke.R | 2 R/livy_install.R | 2 R/livy_invoke.R | 1 R/ml_metrics.R | 2 R/ml_regression_generalized_linear_regression.R | 1 R/ml_utils.R | 3 R/params_validator.R | 2 R/qubole_connection.R | 1 R/sdf_interface.R | 4 R/spark_extensions.R | 4 R/stream_data.R | 92 ++++++++++++- R/stream_operations.R | 2 R/utils.R | 9 + R/worker_invoke.R | 1 build/partial.rdb |binary inst/extdata/versions.json | 8 + man/collect_from_rds.Rd | 2 man/ft_binarizer.Rd | 2 man/ft_bucketizer.Rd | 2 man/ft_chisq_selector.Rd | 2 man/ft_count_vectorizer.Rd | 2 man/ft_dct.Rd | 2 man/ft_elementwise_product.Rd | 2 man/ft_feature_hasher.Rd | 2 man/ft_hashing_tf.Rd | 2 man/ft_idf.Rd | 2 man/ft_imputer.Rd | 2 man/ft_index_to_string.Rd | 2 man/ft_interaction.Rd | 2 man/ft_lsh.Rd | 2 man/ft_max_abs_scaler.Rd | 2 man/ft_min_max_scaler.Rd | 2 man/ft_ngram.Rd | 2 man/ft_normalizer.Rd | 2 man/ft_pca.Rd | 2 man/ft_polynomial_expansion.Rd | 2 man/ft_quantile_discretizer.Rd | 2 man/ft_r_formula.Rd | 2 man/ft_regex_tokenizer.Rd | 2 man/ft_robust_scaler.Rd | 2 man/ft_standard_scaler.Rd | 2 man/ft_stop_words_remover.Rd | 2 man/ft_string_indexer.Rd | 2 man/ft_tokenizer.Rd | 2 man/ft_vector_assembler.Rd | 2 man/ft_vector_indexer.Rd | 2 man/ft_vector_slicer.Rd | 2 man/ft_word2vec.Rd | 2 man/spark_insert_table.Rd | 2 man/spark_load_table.Rd | 2 man/spark_read_avro.Rd | 2 man/spark_read_binary.Rd | 2 man/spark_read_csv.Rd | 2 man/spark_read_delta.Rd | 2 man/spark_read_image.Rd | 2 man/spark_read_jdbc.Rd | 2 man/spark_read_json.Rd | 2 man/spark_read_libsvm.Rd | 2 man/spark_read_orc.Rd | 2 man/spark_read_parquet.Rd | 2 man/spark_read_source.Rd | 2 man/spark_read_table.Rd | 2 man/spark_read_text.Rd | 2 man/spark_save_table.Rd | 2 man/spark_write_avro.Rd | 2 man/spark_write_csv.Rd | 2 man/spark_write_delta.Rd | 2 man/spark_write_jdbc.Rd | 2 man/spark_write_json.Rd | 2 man/spark_write_orc.Rd | 2 man/spark_write_parquet.Rd | 2 man/spark_write_source.Rd | 2 man/spark_write_table.Rd | 2 man/spark_write_text.Rd | 2 man/sql-transformer.Rd | 2 man/stream_read_csv.Rd | 6 man/stream_write_csv.Rd | 3 man/stream_write_memory.Rd | 3 man/stream_write_table.Rd |only 85 files changed, 328 insertions(+), 161 deletions(-)
Title: A Framework for Parallelizing Dependent Tasks
Description: Mechanisms to parallelize dependent tasks in a manner that
optimizes the compute resources available. It provides access to "delayed"
computations, which may be parallelized using futures. It is, to an extent,
a facsimile of the 'Dask' library (<https://www.dask.org/>), for the 'Python'
language.
Author: Jeremy Coyle [aut, cre, cph] ,
Nima Hejazi [ctb]
Maintainer: Jeremy Coyle <jeremyrcoyle@gmail.com>
Diff between delayed versions 0.4.0 dated 2022-10-19 and 0.5.0 dated 2024-04-29
DESCRIPTION | 6 - MD5 | 20 ++--- NEWS.md | 10 ++ R/Job.R | 2 R/Scheduler.R | 11 ++ build/vignette.rds |binary inst/doc/delayed.R | 4 - inst/doc/delayed.html | 154 +++++++++++++++++++--------------------- tests/testthat/test_Delayed.R | 2 tests/testthat/test_benchmark.R | 2 tests/testthat/test_seed.R | 29 ++++--- 11 files changed, 131 insertions(+), 109 deletions(-)
Title: Cross-Validating Regression Models
Description: Cross-validation methods of regression models that exploit features of various
modeling functions to improve speed. Some of the methods implemented in the package are
novel, as described in the package vignettes; for general introductions to cross-validation,
see, for example, Gareth James, Daniela Witten, Trevor Hastie, and Robert Tibshirani
(2021, ISBN 978-1-0716-1417-4, Secs. 5.1, 5.3), "An Introduction to Statistical Learning with
Applications in R, Second Edition", and Trevor Hastie, Robert Tibshirani,
and Jerome Friedman (2009, ISBN 978-0-387-84857-0, Sec. 7.10), "The Elements of Statistical
Learning, Second Edition".
Author: John Fox [aut] ,
Georges Monette [aut, cre]
Maintainer: Georges Monette <georges+cv@yorku.ca>
Diff between cv versions 1.1.0 dated 2024-01-27 and 2.0.0 dated 2024-04-29
cv-1.1.0/cv/R/cvSelect.R |only cv-1.1.0/cv/R/getResponse.R |only cv-1.1.0/cv/man/GetResponse.Rd |only cv-1.1.0/cv/man/cvMixed.Rd |only cv-1.1.0/cv/man/cvSelect.Rd |only cv-1.1.0/cv/man/models.Rd |only cv-2.0.0/cv/DESCRIPTION | 19 cv-2.0.0/cv/MD5 | 99 cv-2.0.0/cv/NAMESPACE | 21 cv-2.0.0/cv/NEWS.md | 22 cv-2.0.0/cv/R/cost-functions.R | 44 cv-2.0.0/cv/R/cv-mixed-models.R | 434 +-- cv-2.0.0/cv/R/cv-select.R |only cv-2.0.0/cv/R/cv-utilities.R |only cv-2.0.0/cv/R/cv.R | 1031 +++++--- cv-2.0.0/cv/R/cv.modList.R | 392 ++- cv-2.0.0/cv/README.md | 14 cv-2.0.0/cv/build/vignette.rds |binary cv-2.0.0/cv/inst/WORDLIST | 4 cv-2.0.0/cv/inst/doc/cv-extend.R | 346 +- cv-2.0.0/cv/inst/doc/cv-extend.Rmd | 468 ++-- cv-2.0.0/cv/inst/doc/cv-extend.html | 1300 +++++------ cv-2.0.0/cv/inst/doc/cv-mixed.R |only cv-2.0.0/cv/inst/doc/cv-mixed.Rmd |only cv-2.0.0/cv/inst/doc/cv-mixed.html |only cv-2.0.0/cv/inst/doc/cv-notes.R |only cv-2.0.0/cv/inst/doc/cv-notes.Rmd |only cv-2.0.0/cv/inst/doc/cv-notes.html |only cv-2.0.0/cv/inst/doc/cv-selection.R |only cv-2.0.0/cv/inst/doc/cv-selection.Rmd |only cv-2.0.0/cv/inst/doc/cv-selection.html |only cv-2.0.0/cv/inst/doc/cv.R | 630 +---- cv-2.0.0/cv/inst/doc/cv.Rmd | 1132 +-------- cv-2.0.0/cv/inst/doc/cv.html | 3369 ++++++----------------------- cv-2.0.0/cv/man/cost-functions.Rd | 16 cv-2.0.0/cv/man/cv.Rd | 215 + cv-2.0.0/cv/man/cv.function.Rd |only cv-2.0.0/cv/man/cv.merMod.Rd |only cv-2.0.0/cv/man/cv.modList.Rd |only cv-2.0.0/cv/man/cvCompute.Rd |only cv-2.0.0/cv/tests/testthat/test-cv.R | 18 cv-2.0.0/cv/tests/testthat/test-cvMixed.R | 2 cv-2.0.0/cv/tests/testthat/test-cvSelect.R | 160 + cv-2.0.0/cv/vignettes/cv-extend.Rmd | 468 ++-- cv-2.0.0/cv/vignettes/cv-mixed.Rmd |only cv-2.0.0/cv/vignettes/cv-mixed_cache |only cv-2.0.0/cv/vignettes/cv-notes.Rmd |only cv-2.0.0/cv/vignettes/cv-notes_cache |only cv-2.0.0/cv/vignettes/cv-selection.Rmd |only cv-2.0.0/cv/vignettes/cv-selection_cache |only cv-2.0.0/cv/vignettes/cv.Rmd | 1132 +-------- cv-2.0.0/cv/vignettes/cv.bib | 18 52 files changed, 4315 insertions(+), 7039 deletions(-)
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available. The methods are described in
Hothorn et al. (2006) <doi:10.1198/106186006X133933>,
Zeileis et al. (2008) <d [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Kurt Hornik [aut],
Carolin Strobl [aut],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.3-14 dated 2023-11-28 and 1.3-15 dated 2024-04-29
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/Utils.R | 6 +----- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS | 4 ++++ inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary man/BinaryTree-class.Rd | 2 +- man/RandomForest-class.Rd | 2 +- man/mob.Rd | 2 +- 11 files changed, 22 insertions(+), 22 deletions(-)
Title: Gaussian Mixture Modelling for Model-Based Clustering,
Classification, and Density Estimation
Description: Gaussian finite mixture models fitted via EM algorithm for
model-based clustering, classification, and density estimation,
including Bayesian regularization, dimension reduction for
visualisation, and resampling-based inference.
Author: Chris Fraley [aut],
Adrian E. Raftery [aut] ,
Luca Scrucca [aut, cre] ,
Thomas Brendan Murphy [ctb] ,
Michael Fop [ctb]
Maintainer: Luca Scrucca <luca.scrucca@unipg.it>
Diff between mclust versions 6.1 dated 2024-02-23 and 6.1.1 dated 2024-04-29
mclust-6.1.1/mclust/DESCRIPTION | 8 mclust-6.1.1/mclust/MD5 | 55 +-- mclust-6.1.1/mclust/NEWS.md | 10 mclust-6.1.1/mclust/R/bootstrap.R | 214 +++++++------- mclust-6.1.1/mclust/R/densityMclust.R | 2 mclust-6.1.1/mclust/R/mclust.R | 2 mclust-6.1.1/mclust/R/mclust2.R | 38 +- mclust-6.1.1/mclust/R/mclustda.R | 80 ++--- mclust-6.1.1/mclust/R/mclustssc.R | 21 - mclust-6.1.1/mclust/R/util.R | 33 +- mclust-6.1.1/mclust/R/weights.R | 18 - mclust-6.1.1/mclust/build/partial.rdb |only mclust-6.1.1/mclust/build/vignette.rds |binary mclust-6.1.1/mclust/data/Baudry_etal_2010_JCGS_examples.R |only mclust-6.1.1/mclust/data/EuroUnemployment.R |only mclust-6.1.1/mclust/data/GvHD.R |only mclust-6.1.1/mclust/data/acidity.R |only mclust-6.1.1/mclust/data/banknote.txt |only mclust-6.1.1/mclust/data/chevron.R |only mclust-6.1.1/mclust/data/cross.R |only mclust-6.1.1/mclust/data/diabetes.R |only mclust-6.1.1/mclust/data/thyroid.R |only mclust-6.1.1/mclust/data/wdbc.txt |only mclust-6.1.1/mclust/data/wreath.R |only mclust-6.1.1/mclust/inst/doc/mclust.html | 100 +++--- mclust-6.1.1/mclust/man/MclustBootstrap.Rd | 8 mclust-6.1.1/mclust/man/logsumexp.Rd | 7 mclust-6.1.1/mclust/man/plot.MclustBoostrap.Rd | 4 mclust-6.1.1/mclust/man/softmax.Rd | 9 mclust-6.1/mclust/data/Baudry_etal_2010_JCGS_examples.rda |only mclust-6.1/mclust/data/EuroUnemployment.rda |only mclust-6.1/mclust/data/GvHD.rda |only mclust-6.1/mclust/data/acidity.rda |only mclust-6.1/mclust/data/banknote.txt.gz |only mclust-6.1/mclust/data/chevron.rda |only mclust-6.1/mclust/data/cross.rda |only mclust-6.1/mclust/data/diabetes.rda |only mclust-6.1/mclust/data/thyroid.rda |only mclust-6.1/mclust/data/wdbc.txt.gz |only mclust-6.1/mclust/data/wreath.rda |only 40 files changed, 336 insertions(+), 273 deletions(-)
Title: qPCR Data Analysis
Description: Various methods are employed for statistical analysis and graphical presentation of real-time PCR (quantitative PCR or qPCR) data. 'rtpcr' handles amplification efficiency calculation, statistical analysis and graphical representation of real-time PCR data based on up to two reference genes. By accounting for amplification efficiency values, 'rtpcr' was developed using a general calculation method described by Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods. Based on the experimental conditions, the functions of the 'rtpcr' package use t-test (for experiments with a two-level factor), analysis of variance (ANOVA), analysis of covariance (ANCOVA) or analysis of repeated measure data to calculate the fold change (FC, ${\Delta\Delta C_t}$ method) or relative expression (RE, ${\Delta C_t}$ method). The functions further provide standard errors and confidence intervals [...truncated...]
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <gh.mirzaghaderi@uok.ac.ir>
Diff between rtpcr versions 1.0.5 dated 2024-04-21 and 1.0.6 dated 2024-04-29
rtpcr-1.0.5/rtpcr/man/figures |only rtpcr-1.0.6/rtpcr/DESCRIPTION | 12 rtpcr-1.0.6/rtpcr/MD5 | 73 +- rtpcr-1.0.6/rtpcr/NAMESPACE | 4 rtpcr-1.0.6/rtpcr/R/efficiency.r | 113 +--- rtpcr-1.0.6/rtpcr/R/multiplot.r | 2 rtpcr-1.0.6/rtpcr/R/oneFACTORplot.r | 130 ++++ rtpcr-1.0.6/rtpcr/R/package_data.r | 66 ++ rtpcr-1.0.6/rtpcr/R/qpcrANCOVA.r | 92 +-- rtpcr-1.0.6/rtpcr/R/qpcrANOVA.r | 4 rtpcr-1.0.6/rtpcr/R/qpcrREPEATED.r |only rtpcr-1.0.6/rtpcr/R/qpcrTTEST.r | 1 rtpcr-1.0.6/rtpcr/R/qpcrTTESTplot.r | 1 rtpcr-1.0.6/rtpcr/R/threeFACTORplot.r | 106 +++ rtpcr-1.0.6/rtpcr/R/twoFACTORplot.r | 154 ++++- rtpcr-1.0.6/rtpcr/data/data_repeated_measure_1.rda |only rtpcr-1.0.6/rtpcr/data/data_repeated_measure_2.rda |only rtpcr-1.0.6/rtpcr/inst/doc/vignette.R | 48 + rtpcr-1.0.6/rtpcr/inst/doc/vignette.Rmd | 102 ++- rtpcr-1.0.6/rtpcr/inst/doc/vignette.html | 358 +++++++++---- rtpcr-1.0.6/rtpcr/inst/extdata/data_repeated_measure_1.csv |only rtpcr-1.0.6/rtpcr/inst/extdata/data_repeated_measure_2.csv |only rtpcr-1.0.6/rtpcr/man/Lee_etal2020qPCR.Rd | 2 rtpcr-1.0.6/rtpcr/man/Taylor_etal2019.Rd | 5 rtpcr-1.0.6/rtpcr/man/data_1factor.Rd | 2 rtpcr-1.0.6/rtpcr/man/data_2factor.Rd | 2 rtpcr-1.0.6/rtpcr/man/data_2factorBlock.Rd | 2 rtpcr-1.0.6/rtpcr/man/data_3factor.Rd | 2 rtpcr-1.0.6/rtpcr/man/data_repeated_measure_1.Rd |only rtpcr-1.0.6/rtpcr/man/data_repeated_measure_2.Rd |only rtpcr-1.0.6/rtpcr/man/data_ttest.Rd | 5 rtpcr-1.0.6/rtpcr/man/data_withTechRep.Rd | 2 rtpcr-1.0.6/rtpcr/man/efficiency.Rd | 17 rtpcr-1.0.6/rtpcr/man/multiplot.Rd | 2 rtpcr-1.0.6/rtpcr/man/oneFACTORplot.Rd | 4 rtpcr-1.0.6/rtpcr/man/qpcrANCOVA.Rd | 17 rtpcr-1.0.6/rtpcr/man/qpcrANOVA.Rd | 2 rtpcr-1.0.6/rtpcr/man/qpcrREPEATED.Rd |only rtpcr-1.0.6/rtpcr/man/threeFACTORplot.Rd | 4 rtpcr-1.0.6/rtpcr/man/twoFACTORplot.Rd | 23 rtpcr-1.0.6/rtpcr/vignettes/vignette.Rmd | 102 ++- 41 files changed, 1020 insertions(+), 439 deletions(-)
Title: Most Likely Transformations: Documentation and Regression Tests
Description: Additional documentation, a package vignette and
regression tests for package mlt.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt.docreg versions 1.1-7 dated 2023-08-28 and 1.1-8 dated 2024-04-29
DESCRIPTION | 14 ++++++-------- MD5 | 15 ++++++++------- build/vignette.rds |binary inst/NEWS.Rd | 6 ++++++ inst/doc/mlt.R | 2 +- inst/doc/mlt.Rnw | 10 ++++------ inst/doc/mlt.pdf |binary vignettes/mlt.Rnw | 10 ++++------ vignettes/packages_static.bib |only 9 files changed, 29 insertions(+), 28 deletions(-)
Title: Methods for Analysing 'EQ-5D' Data and Calculating 'EQ-5D' Index
Scores
Description: EQ-5D is a popular health related quality of life instrument used
in the clinical and economic evaluation of health care. Developed by the
EuroQol group <https://euroqol.org/>, the instrument consists of two
components: health state description and evaluation. For the description
component a subject self-rates their health in terms of five dimensions;
mobility, self-care, usual activities, pain/discomfort, and
anxiety/depression using either a three-level (EQ-5D-3L,
<https://euroqol.org/information-and-support/euroqol-instruments/eq-5d-3l/>) or a five-level
(EQ-5D-5L, <https://euroqol.org/information-and-support/euroqol-instruments/eq-5d-5l/>)
scale. Frequently the scores on these five dimensions are converted to a
single utility index using country specific value sets, which can be used
in the clinical and economic evaluation of health care as well as in
population health surveys. The eq5d package provides methods to calculate
index scores from a subject's dimension [...truncated...]
Author: Fraser Morton [aut, cre],
Jagtar Singh Nijjar [aut]
Maintainer: Fraser Morton <fraser.morton@glasgow.ac.uk>
Diff between eq5d versions 0.15.2 dated 2024-01-31 and 0.15.3 dated 2024-04-29
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/data.R | 5 +++-- R/sysdata.rda |binary inst/doc/eq5d.html | 27 ++++++++++++++------------- man/TTO.Rd | 2 +- man/VT.Rd | 5 +++-- man/eq5d-package.Rd | 2 +- tests/testthat/test-eq5d5l.R | 10 ++++++++++ 10 files changed, 49 insertions(+), 32 deletions(-)
Title: Bayesian Additive Models for Location, Scale, and Shape (and
Beyond)
Description: Infrastructure for estimating probabilistic distributional regression models in a Bayesian framework.
The distribution parameters may capture location, scale, shape, etc. and every parameter may depend
on complex additive terms (fixed, random, smooth, spatial, etc.) similar to a generalized additive model.
The conceptual and computational framework is introduced in Umlauf, Klein, Zeileis (2019)
<doi:10.1080/10618600.2017.1407325> and the R package in Umlauf, Klein, Simon, Zeileis (2021)
<doi:10.18637/jss.v100.i04>.
Author: Nikolaus Umlauf [aut, cre] ,
Nadja Klein [aut] ,
Achim Zeileis [aut] ,
Meike Koehler [ctb],
Thorsten Simon [aut] ,
Stanislaus Stadlmann [ctb],
Alexander Volkmann [ctb]
Maintainer: Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
Diff between bamlss versions 1.2-3 dated 2024-03-18 and 1.2-4 dated 2024-04-29
DESCRIPTION | 8 MD5 | 48 R/BAMLSS.R |19344 +++++++++++++++++++++++++++------------------------ R/BayesX.R | 2938 ++++--- R/GAMart.R | 323 R/JAGS.R | 736 + R/JM.R | 8982 +++++++++++++---------- R/bnd.R | 9 R/data.R | 110 R/families.R | 9089 +++++++++++++++-------- R/homstart.R | 465 - R/imports.R | 444 - R/maps.R | 833 +- R/mvnchol.R | 1258 ++- R/optimizers.R |10790 +++++++++++++++------------- R/samplers.R | 2751 ++++--- R/sigmoid.R | 369 R/stabsel.R | 474 - R/survival.R | 2417 +++--- R/topmodels.R | 432 - R/vis.R | 3561 ++++----- inst/doc/bamlss.Rmd | 5 inst/doc/bamlss.html | 1987 +---- vignettes/bamlss.Rmd | 5 vignettes/bamlss.bib | 4 25 files changed, 37702 insertions(+), 29680 deletions(-)
Title: Access to Teaching Materials from a ZIP File or GitHub
Description: Provides access to teaching materials for various statistics courses, including R and Python programs,
Shiny apps, data, and PDF/HTML documents. These materials are stored on the Internet as a ZIP file
(e.g., in a GitHub repository) and can be downloaded and displayed or run locally. The content of the ZIP file
is temporarily or permanently stored. By default, the package uses the GitHub repository
'sigbertklinke/mmstat4.data.' Additionally, the package includes 'association_measures.R'
from the archived package 'ryouready' by Mark Heckman and some auxiliary functions.
Author: Sigbert Klinke [aut, cre] ,
Jekaterina Zukovska [ctb]
Maintainer: Sigbert Klinke <sigbert@hu-berlin.de>
Diff between mmstat4 versions 0.2.0 dated 2024-04-12 and 0.2.1 dated 2024-04-29
mmstat4-0.2.0/mmstat4/R/install.R |only mmstat4-0.2.0/mmstat4/man/install.Rd |only mmstat4-0.2.0/mmstat4/man/packages.Rd |only mmstat4-0.2.1/mmstat4/DESCRIPTION | 10 mmstat4-0.2.1/mmstat4/MD5 | 53 ++-- mmstat4-0.2.1/mmstat4/NAMESPACE | 19 - mmstat4-0.2.1/mmstat4/R/Rlibs.R | 94 +++++-- mmstat4-0.2.1/mmstat4/R/Rsolo.R | 5 mmstat4-0.2.1/mmstat4/R/askUser.R | 8 mmstat4-0.2.1/mmstat4/R/gh.R | 7 mmstat4-0.2.1/mmstat4/R/ghdecompose.R | 2 mmstat4-0.2.1/mmstat4/R/ghget.R | 9 mmstat4-0.2.1/mmstat4/R/ghinstall.R | 35 +- mmstat4-0.2.1/mmstat4/R/ghrepos.R | 2 mmstat4-0.2.1/mmstat4/R/note.R |only mmstat4-0.2.1/mmstat4/R/openFile.R |only mmstat4-0.2.1/mmstat4/R/urlExists.R |only mmstat4-0.2.1/mmstat4/R/zzz.R | 13 - mmstat4-0.2.1/mmstat4/inst/doc/mmstat4.R | 33 ++ mmstat4-0.2.1/mmstat4/inst/doc/mmstat4.Rmd | 95 +++++-- mmstat4-0.2.1/mmstat4/inst/doc/mmstat4.html | 298 +++++++++++------------ mmstat4-0.2.1/mmstat4/inst/zip/mmstat4.dummy.zip |binary mmstat4-0.2.1/mmstat4/man/askUser.Rd | 9 mmstat4-0.2.1/mmstat4/man/checkFiles.Rd | 6 mmstat4-0.2.1/mmstat4/man/gh.Rd | 4 mmstat4-0.2.1/mmstat4/man/ghdecompose.Rd | 2 mmstat4-0.2.1/mmstat4/man/ghinstall.Rd | 4 mmstat4-0.2.1/mmstat4/man/note.Rd |only mmstat4-0.2.1/mmstat4/man/openFile.Rd |only mmstat4-0.2.1/mmstat4/man/pkglist.Rd |only mmstat4-0.2.1/mmstat4/man/py_env.Rd |only mmstat4-0.2.1/mmstat4/man/urlExists.Rd |only mmstat4-0.2.1/mmstat4/vignettes/mmstat4.Rmd | 95 +++++-- 33 files changed, 509 insertions(+), 294 deletions(-)
Title: Groupwise Statistics, LSmeans, Linear Estimates, Utilities
Description: Utility package containing:
1) Facilities for working with grouped data: 'do' something to data
stratified 'by' some variables.
2) LSmeans (least-squares means), general linear estimates.
3) Restrict functions to a smaller domain.
4) Miscellaneous other utilities.
Author: Soeren Hoejsgaard <sorenh@math.aau.dk> and Ulrich Halekoh
<uhalekoh@health.sdu.dk>
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between doBy versions 4.6.20 dated 2023-11-01 and 4.6.21 dated 2024-04-29
doBy-4.6.20/doBy/data/crimeRate.txt |only doBy-4.6.20/doBy/inst/doc/section_fun.pdf |only doBy-4.6.20/doBy/inst/doc/section_fun.rnw |only doBy-4.6.20/doBy/vignettes/section_fun.rnw |only doBy-4.6.21/doBy/DESCRIPTION | 18 doBy-4.6.21/doBy/MD5 | 96 +++-- doBy-4.6.21/doBy/NAMESPACE | 30 + doBy-4.6.21/doBy/NEWS.md | 8 doBy-4.6.21/doBy/R/DATA_doby.R | 35 + doBy-4.6.21/doBy/R/NAMESPACE_doby.R | 14 doBy-4.6.21/doBy/R/binomial_to_bernoulli_data.r |only doBy-4.6.21/doBy/R/by_summaryBy.R | 6 doBy-4.6.21/doBy/R/expr_to_fun.R | 18 doBy-4.6.21/doBy/R/formula_ops.R | 14 doBy-4.6.21/doBy/R/matrix_op.R | 4 doBy-4.6.21/doBy/R/model_stability.r |only doBy-4.6.21/doBy/R/plot_lm.r |only doBy-4.6.21/doBy/R/section_fun.R | 33 + doBy-4.6.21/doBy/R/split_byrow_bycol.R | 173 +++++++-- doBy-4.6.21/doBy/R/sub_seq.R | 35 - doBy-4.6.21/doBy/R/tidy.R | 12 doBy-4.6.21/doBy/R/time_since_event.R | 387 ++++++++++----------- doBy-4.6.21/doBy/R/truncate0.r |only doBy-4.6.21/doBy/R/which_maxn.R | 19 - doBy-4.6.21/doBy/README.md | 19 - doBy-4.6.21/doBy/build/vignette.rds |binary doBy-4.6.21/doBy/data/crickets.RData |only doBy-4.6.21/doBy/data/crimeRate.RData |binary doBy-4.6.21/doBy/data/crime_rate.RData |binary doBy-4.6.21/doBy/inst/doc/doby.R | 16 doBy-4.6.21/doBy/inst/doc/doby.pdf |binary doBy-4.6.21/doBy/inst/doc/doby.rnw | 24 - doBy-4.6.21/doBy/inst/doc/linest_lsmeans.R | 4 doBy-4.6.21/doBy/inst/doc/linest_lsmeans.pdf |binary doBy-4.6.21/doBy/inst/doc/linest_lsmeans.rnw | 13 doBy-4.6.21/doBy/inst/doc/model_stability.R |only doBy-4.6.21/doBy/inst/doc/model_stability.html |only doBy-4.6.21/doBy/inst/doc/model_stability.rmd |only doBy-4.6.21/doBy/inst/doc/section_fun.R | 104 +++-- doBy-4.6.21/doBy/inst/doc/section_fun.html |only doBy-4.6.21/doBy/inst/doc/section_fun.rmd |only doBy-4.6.21/doBy/man/binomial_to_bernoulli_data.Rd |only doBy-4.6.21/doBy/man/by-summary.Rd | 6 doBy-4.6.21/doBy/man/crickets.Rd |only doBy-4.6.21/doBy/man/cv_glm_fitlist.Rd |only doBy-4.6.21/doBy/man/expr_to_fun.Rd | 5 doBy-4.6.21/doBy/man/formula_ops.Rd | 4 doBy-4.6.21/doBy/man/generate_data_list.Rd |only doBy-4.6.21/doBy/man/get_formulas.Rd |only doBy-4.6.21/doBy/man/model_stability_glm.Rd |only doBy-4.6.21/doBy/man/plot_lm.Rd |only doBy-4.6.21/doBy/man/section_fun.Rd | 22 - doBy-4.6.21/doBy/man/split_byrow_bycol.Rd | 25 + doBy-4.6.21/doBy/man/sub_seq.Rd | 6 doBy-4.6.21/doBy/man/timeSinceEvent.Rd | 7 doBy-4.6.21/doBy/man/truncate0.Rd |only doBy-4.6.21/doBy/man/which.maxn.Rd | 1 doBy-4.6.21/doBy/vignettes/doby.rnw | 24 - doBy-4.6.21/doBy/vignettes/linest_lsmeans.rnw | 13 doBy-4.6.21/doBy/vignettes/model_stability.rmd |only doBy-4.6.21/doBy/vignettes/section_fun.rmd |only 61 files changed, 711 insertions(+), 484 deletions(-)
Title: Solve Generalized Estimating Equations for Clustered Data
Description: Estimation of generalized linear models with
correlated/clustered observations by use of generalized estimating
equations (GEE). See e.g. Halekoh and Højsgaard, (2005,
<doi:10.18637/jss.v015.i02>), for details. Several types of
clustering are supported, including exchangeable variance
structures, AR1 structures, M-dependent, user-specified variance
structures and more. The model fitting computations are performed
using modified code from the 'geeM' package, while the interface
and output objects have been written to resemble the 'geepack'
package. The package also contains additional tools for working
with and inspecting results from the 'geepack' package, e.g. a
'confint' method for 'geeglm' objects from 'geepack'.
Author: Anne Helby Petersen [aut],
Lee McDaniel [aut] ,
Claus Ekstroem [ctb] ,
Soeren Hoejsgaard [aut, cre]
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between geeasy versions 0.1.1 dated 2022-01-06 and 0.1.2 dated 2024-04-29
DESCRIPTION | 10 ++++----- MD5 | 16 +++++++-------- NEWS.md | 7 ++++++ R/geelm.R | 40 +++++++++++++++++++++++++++++++++++-- README.md | 10 ++++++++- inst/CITATION | 14 ++++++------- man/confint.geelm.Rd | 4 +-- man/geelm.Rd | 54 +++++++++++++++++++++++++++++++++++++-------------- man/getGEE.Rd | 4 +-- 9 files changed, 118 insertions(+), 41 deletions(-)
Title: Shiny Application for 'FossilSim'
Description: A shiny application based on 'FossilSim'. Used for simulating
tree, taxonomic and fossil data under mechanistic models of speciation,
preservation and sampling.
Author: Titouan Chambe [aut],
Joelle Barido-Sottani [aut, cre, cph],
Rachel Warnock [aut, cph]
Maintainer: Joelle Barido-Sottani <joelle.barido-sottani@m4x.org>
Diff between FossilSimShiny versions 1.1.1 dated 2023-12-18 and 1.1.2 dated 2024-04-29
DESCRIPTION | 8 MD5 | 28 NEWS.md | 76 +- TODO | 47 + build/vignette.rds |binary inst/doc/fossilSimShiny.R | 110 +-- inst/doc/fossilSimShiny.html | 1182 +++++++++++++++++++-------------------- inst/doc/hosting.R | 14 inst/doc/hosting.Rmd | 476 ++++++++-------- inst/doc/hosting.html | 1184 ++++++++++++++++++++-------------------- inst/shinyApp/R/inputSidebar.R | 77 +- inst/shinyApp/R/outputSidebar.R | 503 ++++++++-------- inst/shinyApp/app.R | 168 ++--- inst/shinyApp/www/tooltip.js | 190 +++--- vignettes/hosting.Rmd | 476 ++++++++-------- 15 files changed, 2316 insertions(+), 2223 deletions(-)
More information about FossilSimShiny at CRAN
Permanent link
Title: Simulation of Fossil and Taxonomy Data
Description: Simulating taxonomy and fossil data on phylogenetic trees under mechanistic
models of speciation, preservation and sampling.
Author: Rachel Warnock [aut, cph],
Joelle Barido-Sottani [aut, cre, cph],
Walker Pett [aut, cph],
O'Reilly Joseph [aut, cph]
Maintainer: Joelle Barido-Sottani <joelle.barido-sottani@m4x.org>
Diff between FossilSim versions 2.3.2 dated 2023-10-05 and 2.3.3 dated 2024-04-29
DESCRIPTION | 6 MD5 | 44 NEWS.md | 125 +- R/FossilSim.R | 102 +- R/plot.fossils.R | 50 - R/plot.taxonomy.R | 5 R/subsampling.R | 2 build/vignette.rds |binary inst/doc/SAtree.R | 42 inst/doc/SAtree.html | 951 ++++++++++----------- inst/doc/fossils.R | 582 ++++++------- inst/doc/fossils.html | 1981 ++++++++++++++++++++++----------------------- inst/doc/intro.R | 62 - inst/doc/intro.html | 992 +++++++++++----------- inst/doc/paleotree.R | 44 inst/doc/paleotree.html | 1050 +++++++++-------------- inst/doc/simfbd.R | 48 - inst/doc/simfbd.html | 932 ++++++++++----------- inst/doc/taxonomy.R | 112 +- inst/doc/taxonomy.html | 1308 ++++++++++++++--------------- man/plot.fossils.Rd | 15 man/plot.taxonomy.Rd | 3 man/remove.stem.fossils.Rd | 2 23 files changed, 4160 insertions(+), 4298 deletions(-)
Title: Modelling of Population Growth
Description: Modelling of population growth under static and dynamic environmental conditions.
Includes functions for model fitting and making prediction under isothermal and
dynamic conditions. The methods (algorithms & models) are based on
predictive microbiology (See Perez-Rodriguez and Valero (2012, ISBN:978-1-4614-5519-6)).
Author: Alberto Garre [aut, cre] ,
Jeroen Koomen [aut],
Heidy den Besten [aut],
Marcel Zwietering [aut]
Maintainer: Alberto Garre <garre.alberto@gmail.com>
Diff between biogrowth versions 1.0.3 dated 2023-08-18 and 1.0.4 dated 2024-04-29
DESCRIPTION | 8 MD5 | 20 NEWS.md | 4 R/GrowthUncertainty_class.R | 186 ++++---- R/fit_multi_dynamic.R | 760 +++++++++++++++++------------------ R/predict_stochastic_growth.R | 533 ++++++++++++------------ inst/doc/v03_growth_uncertainty.Rmd | 596 +++++++++++++-------------- inst/doc/v03_growth_uncertainty.html | 19 man/GrowthUncertainty.Rd | 4 man/predict_growth_uncertainty.Rd | 10 vignettes/v03_growth_uncertainty.Rmd | 596 +++++++++++++-------------- 11 files changed, 1387 insertions(+), 1349 deletions(-)
Title: 'Canvas' LMS API Integration
Description: Allow R users to interact with the 'Canvas' Learning Management System (LMS) API (see
<https://canvas.instructure.com/doc/api/all_resources.html> for details).
It provides a set of functions to access and manipulate course data, assignments, grades, users,
and other resources available through the 'Canvas' API.
Author: Tomer Iwan [aut, cre, cph]
Maintainer: Tomer Iwan <t.iwan@vu.nl>
Diff between vvcanvas versions 0.0.3 dated 2023-10-23 and 0.0.4 dated 2024-04-29
DESCRIPTION | 6 +++--- MD5 | 36 +++++++++++++++++++++++++----------- NAMESPACE | 6 ++++++ NEWS.md | 9 +++++++++ R/authenticate.R | 35 +++++++++++++++++++++++++++++++---- R/delete_course_section.R |only R/edit_section.R |only R/get_calendar_events.R |only R/get_favorite_courses.R |only R/get_roles.R |only R/get_section_information.R |only README.md | 16 +++++++++++++++- inst/doc/getting_started.R | 14 ++++++++++++-- inst/doc/getting_started.Rmd | 12 +++++++++++- inst/doc/getting_started.html | 14 ++++++++++++-- inst/doc/groups_use_case.R | 2 +- man/canvas_api_key.Rd |only man/canvas_authenticate.Rd | 13 +++++++++---- man/canvas_base_url.Rd |only man/delete_course_section.Rd |only man/edit_section.Rd |only man/get_calendar_events.Rd |only man/get_favorite_courses.Rd |only man/get_roles.Rd |only man/get_section_information.Rd |only vignettes/getting_started.Rmd | 12 +++++++++++- 26 files changed, 145 insertions(+), 30 deletions(-)
Title: One-Dimensional Probability Distribution Support for the
'spatstat' Family
Description: Estimation of one-dimensional probability distributions
including kernel density estimation, weighted empirical cumulative
distribution functions, Kaplan-Meier and reduced-sample estimators
for right-censored data, heat kernels, kernel properties,
quantiles and integration.
Author: Adrian Baddeley [aut, cre, cph]
,
Tilman M. Davies [aut, ctb, cph]
,
Martin L. Hazelton [aut, ctb, cph]
,
Ege Rubak [aut, cph] ,
Rolf Turner [aut, cph] ,
Greg McSwiggan [ctb, cph]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.univar versions 2.0-2 dated 2024-04-16 and 2.0-3 dated 2024-04-29
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS | 6 ++++++ inst/doc/packagesizes.txt | 2 +- man/ewcdf.Rd | 4 ++-- man/integral.density.Rd | 4 +--- man/mean.ewcdf.Rd | 2 +- man/spatstat.univar-internal.Rd | 7 +++++-- 9 files changed, 29 insertions(+), 21 deletions(-)
More information about spatstat.univar at CRAN
Permanent link
Title: Analysis of RNA Crosslinking Data
Description: Analysis of RNA crosslinking data for RNA structure prediction. The package is suitable for the analysis of RNA structure cross-linking data and chemical probing data.
Author: Jonathan Price [aut, cre] ,
Andrew Lim [ctb]
Maintainer: Jonathan Price <jlp76@cam.ac.uk>
Diff between rnaCrosslinkOO versions 0.1.2 dated 2024-02-29 and 0.1.3 dated 2024-04-29
DESCRIPTION | 8 MD5 | 31 NAMESPACE | 1 R/commonStatsAndPlots.R | 28 R/rnaCrosslinkDataSet.R | 95 ++ R/rnaCrosslinkDataSetMethodsAndHelpers.R | 231 ++---- R/rnaCrosslinkOO-package.R | 2 R/rnaCrosslinkQC.R |only inst/doc/rnaCrosslinkOO.R | 15 inst/doc/rnaCrosslinkOO.Rmd | 50 + inst/doc/rnaCrosslinkOO.html | 1161 +++++++++++++++---------------- man/featureInfo.Rd | 3 man/plotCombinedMatrix.Rd | 5 man/rnaCrosslinkDataSet.Rd | 12 man/rnaCrosslinkQC.Rd |only man/topInteracters.Rd | 6 vignettes/rnaCrosslinkOO.Rmd | 50 + vignettes/rnacrosslinkoo.jpg |only 18 files changed, 936 insertions(+), 762 deletions(-)
More information about rnaCrosslinkOO at CRAN
Permanent link
Title: Simplify 'ggplot2' Visualisation
Description: Simplify 'ggplot2' visualisation with 'ggblanket' wrapper
functions.
Author: David Hodge [aut, cre, cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggblanket versions 7.0.0 dated 2024-03-28 and 8.0.0 dated 2024-04-29
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ggblanket-8.0.0/ggblanket/vignettes/autocomplete_y.png |binary ggblanket-8.0.0/ggblanket/vignettes/ggblanket.Rmd | 91 247 files changed, 22180 insertions(+), 20738 deletions(-)
Title: Model Visualisation Toolbox for 'easystats' and 'ggplot2'
Description: Provides plotting utilities supporting packages in the 'easystats'
ecosystem (<https://github.com/easystats/easystats>) and some extra themes,
geoms, and scales for 'ggplot2'. Color scales are based on
<https://materialui.co/>.
References: Lüdecke et al. (2021) <doi:10.21105/joss.03393>.
Author: Daniel Luedecke [aut, ctb] ,
Dominique Makowski [aut, inv] ,
Indrajeet Patil [aut, cre] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Brenton M. Wiernik [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Jeffrey R. Stevens [ctb] ,
Matthew Smith [rev] ,
Jakob Bossek [re [...truncated...]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between see versions 0.8.3 dated 2024-03-24 and 0.8.4 dated 2024-04-29
DESCRIPTION | 20 MD5 | 75 - NEWS.md | 19 R/data_plot.R | 2 R/global_vars.R | 4 R/plot.binned_residuals.R | 10 R/plot.check_collinearity.R | 17 R/plot.check_heteroscedasticity.R | 188 ++-- R/plot.check_homogeneity.R | 15 R/plot.check_model.R | 608 +++++++------ R/plot.check_normality.R | 894 ++++++++++--------- R/plot.check_outliers.R | 6 R/plot.check_outliers_new.R | 288 +++--- R/plot.check_overdisp.R | 21 R/plot.check_predictions.R | 1075 +++++++++++++----------- R/plot.compare_parameters.R | 471 +++++----- R/plot.n_factors.R | 18 R/plot.performance_simres.R | 9 R/scale_color_material.R | 4 R/see-package.R | 2 inst/WORDLIST | 1 man/data_plot.Rd | 2 man/geom_violindot.Rd | 31 man/geom_violinhalf.Rd | 65 + man/palette_material.Rd | 2 man/plot.see_check_collinearity.Rd | 8 man/plot.see_check_heteroscedasticity.Rd | 18 man/plot.see_check_normality.Rd | 6 man/plot.see_check_outliers.Rd | 6 man/plot.see_performance_simres.Rd | 6 man/print.see_performance_pp_check.Rd | 17 man/scale_color_material.Rd | 2 man/see-package.Rd | 2 tests/testthat.R | 2 tests/testthat/test-check_model.R | 16 tests/testthat/test-plot.compare_parameters.R |only tests/testthat/test-plot.effectsize_table.R | 16 tests/testthat/test-plot.n_factors.R | 6 tests/testthat/test-plot.performance_pp_check.R | 2 39 files changed, 2203 insertions(+), 1751 deletions(-)