Title: Discrete Bayesian Additive Regression Trees Sampler
Description: Fits Bayesian additive regression trees (BART; Chipman, George, and McCulloch (2010) <doi:10.1214/09-AOAS285>) while allowing the updating of predictors or response so that BART can be incorporated as a conditional model in a Gibbs/Metropolis-Hastings sampler. Also serves as a drop-in replacement for package 'BayesTree'.
Author: Vincent Dorie [aut, cre] ,
Hugh Chipman [aut],
Robert McCulloch [aut],
Armon Dadgar [ctb] ,
R Core Team [ctb] ,
Guido U Draheim [ctb] ,
Maarten Bosmans [ctb] ,
Christophe Tournayre [ctb] ,
Michael Petch [ctb] ,
Rafael de Lucena Valle [ctb] ,
Steven G [...truncated...]
Maintainer: Vincent Dorie <vdorie@gmail.com>
Diff between dbarts versions 0.9-26 dated 2024-02-03 and 0.9-28 dated 2024-05-01
.Rinstignore | 1 + DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/dbarts.R | 12 +++++------- build/vignette.rds |binary inst/NEWS.Rd | 8 ++++++++ inst/doc/gibbs_sampler_mixture_model.pdf |binary inst/doc/working_with_saved_trees.pdf |binary inst/include/dbarts/R_C_interface.hpp | 10 ++++++++-- src/include/external/R.h | 10 ++++++++-- src/include/external/Rinternals.h | 10 ++++++++-- 11 files changed, 51 insertions(+), 26 deletions(-)
Title: High-Dimensional Covariate-Augmented Overdispersed Poisson
Factor Model
Description: A covariate-augmented overdispersed Poisson factor model is proposed to jointly perform a high-dimensional Poisson factor analysis and estimate a large coefficient matrix for overdispersed count data.
More details can be referred to Liu et al. (2024) <doi:10.1093/biomtc/ujae031>.
Author: Wei Liu [aut, cre],
Qingzhi Zhong [aut]
Maintainer: Wei Liu <liuweideng@gmail.com>
Diff between COAP versions 1.1 dated 2024-02-29 and 1.2 dated 2024-05-01
DESCRIPTION | 10 +++++----- MD5 | 7 ++++--- R/zzz.R |only README.md | 16 ++++++++++++++-- inst/doc/COAPsimu.html | 6 +++--- 5 files changed, 26 insertions(+), 13 deletions(-)
Title: Species Distribution Modelling
Description: An extensible framework for developing species distribution
models using individual and community-based approaches, generate ensembles of
models, evaluate the models, and predict species potential distributions in
space and time. For more information, please check the following paper:
Naimi, B., Araujo, M.B. (2016) <doi:10.1111/ecog.01881>.
Author: Babak Naimi, Miguel B. Araujo
Maintainer: Babak Naimi <naimi.b@gmail.com>
Diff between sdm versions 1.2-32 dated 2024-03-02 and 1.2-40 dated 2024-05-01
DESCRIPTION | 8 - MD5 | 32 ++-- NAMESPACE | 2 R/background.R | 22 +- R/evaluates.R | 26 ++- R/features.R | 9 - R/impute.R | 6 R/pa.R |only R/pca.R | 7 R/predict.R | 162 +++++++++++---------- R/responseCurve.R | 369 ++++++++++++++++++++++++++++++++++++++++++-------- R/sdmSetting.R | 13 - R/utilities.R | 8 - build/vignette.rds |binary inst/external/sp1.dbf |binary man/ensemble.Rd | 2 man/evaluates.Rd | 2 man/pa.Rd |only 18 files changed, 470 insertions(+), 198 deletions(-)
Title: Embed 'SWI'-'Prolog'
Description: Interface to 'SWI'-'Prolog', <https://www.swi-prolog.org/>. This package is normally not loaded directly, please refer to package 'rolog' instead. The purpose of this package is to provide the 'Prolog' runtime on systems that do not have a software installation of 'SWI'-'Prolog'.
Author: Matthias Gondan [aut, com, cre] ,
Jan Wielemaker [ctb, cph] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rswipl versions 9.3.3.1 dated 2024-03-26 and 9.3.5 dated 2024-05-01
DESCRIPTION | 8 MD5 | 285 +++--- NEWS.md | 6 R/rswipl.R | 38 src/Makevars | 6 src/install.libs.R |only src/swipl-devel/CMakeLists.txt | 3 src/swipl-devel/VERSION | 2 src/swipl-devel/cmake/BuildType.cmake | 37 src/swipl-devel/cmake/Config.cmake | 6 src/swipl-devel/cmake/LibIndex.cmake | 1 src/swipl-devel/library/prolog_codewalk.pl | 4 src/swipl-devel/library/readln.pl | 2 src/swipl-devel/library/vm.pl | 4 src/swipl-devel/packages/clib/process.c | 6 src/swipl-devel/packages/cpp/SWI-cpp2-plx.h | 2 src/swipl-devel/packages/cpp/SWI-cpp2.h | 66 - src/swipl-devel/packages/cpp/test_cpp.cpp | 28 src/swipl-devel/packages/cpp/test_cpp.pl | 2 src/swipl-devel/packages/http/http_header.pl | 5 src/swipl-devel/packages/http/http_load.pl | 25 src/swipl-devel/packages/http/http_session.pl | 8 src/swipl-devel/packages/http/json.pl | 5 src/swipl-devel/packages/ssl/CMakeLists.txt | 2 src/swipl-devel/scripts/configure | 19 src/swipl-devel/scripts/gdbinit |only src/swipl-devel/scripts/make-ppa | 2 src/swipl-devel/src/CMakeLists.txt | 23 src/swipl-devel/src/SWI-Prolog.h | 31 src/swipl-devel/src/Tests/core/test_arith.pl | 4 src/swipl-devel/src/Tests/core/test_string.pl | 4 src/swipl-devel/src/Tests/save/input/integers.pl |only src/swipl-devel/src/Tests/save/test_qlf.pl | 140 ++- src/swipl-devel/src/Tests/save/test_saved_states.pl | 249 ++--- src/swipl-devel/src/libbf/libbf.c | 1 src/swipl-devel/src/os/dtoa.c | 28 src/swipl-devel/src/os/pl-buffer.c | 5 src/swipl-devel/src/os/pl-buffer.h | 13 src/swipl-devel/src/os/pl-codelist.c | 4 src/swipl-devel/src/os/pl-cstack.c | 30 src/swipl-devel/src/os/pl-ctype.c | 105 +- src/swipl-devel/src/os/pl-file.c | 110 +- src/swipl-devel/src/os/pl-fmt.c | 57 - src/swipl-devel/src/os/pl-locale.c | 55 - src/swipl-devel/src/os/pl-os.c | 30 src/swipl-devel/src/os/pl-prologflag.c | 146 +-- src/swipl-devel/src/os/pl-prologflag.h | 8 src/swipl-devel/src/os/pl-stream.c | 31 src/swipl-devel/src/os/pl-string.c | 4 src/swipl-devel/src/os/pl-table.c | 189 +--- src/swipl-devel/src/os/pl-table.h | 326 ++++++- src/swipl-devel/src/os/pl-tai.c | 2 src/swipl-devel/src/os/pl-text.c | 45 - src/swipl-devel/src/os/pl-text.h | 2 src/swipl-devel/src/os/pl-utf8.c | 42 src/swipl-devel/src/pl-alloc-inline.h | 68 + src/swipl-devel/src/pl-alloc.c | 155 +-- src/swipl-devel/src/pl-alloc.h | 11 src/swipl-devel/src/pl-arith.c | 53 - src/swipl-devel/src/pl-arith.h | 8 src/swipl-devel/src/pl-assert.c | 29 src/swipl-devel/src/pl-atom.c | 10 src/swipl-devel/src/pl-atom.h | 17 src/swipl-devel/src/pl-attvar.c | 10 src/swipl-devel/src/pl-btree.c | 2 src/swipl-devel/src/pl-comp.c | 683 ++++++++------- src/swipl-devel/src/pl-comp.h | 34 src/swipl-devel/src/pl-cont.c | 10 src/swipl-devel/src/pl-copyterm.c | 46 - src/swipl-devel/src/pl-coverage.c | 43 src/swipl-devel/src/pl-coverage.h | 2 src/swipl-devel/src/pl-data.h | 216 ++-- src/swipl-devel/src/pl-dbref.c | 9 src/swipl-devel/src/pl-dict.c | 16 src/swipl-devel/src/pl-dwim.c | 13 src/swipl-devel/src/pl-dwim.h | 4 src/swipl-devel/src/pl-error.c | 15 src/swipl-devel/src/pl-ext.c | 2 src/swipl-devel/src/pl-flag.c | 45 - src/swipl-devel/src/pl-flag.h | 2 src/swipl-devel/src/pl-fli.c | 221 +---- src/swipl-devel/src/pl-fli.h | 7 src/swipl-devel/src/pl-funct.c | 2 src/swipl-devel/src/pl-funct.h | 2 src/swipl-devel/src/pl-gc.c | 876 +++++++++++--------- src/swipl-devel/src/pl-gc.h | 15 src/swipl-devel/src/pl-global.h | 62 - src/swipl-devel/src/pl-gmp.c | 293 +++--- src/swipl-devel/src/pl-gmp.h | 6 src/swipl-devel/src/pl-gvar.c | 34 src/swipl-devel/src/pl-hash.c | 12 src/swipl-devel/src/pl-hash.h | 5 src/swipl-devel/src/pl-incl.h | 241 +++-- src/swipl-devel/src/pl-index.c | 20 src/swipl-devel/src/pl-indirect.c | 6 src/swipl-devel/src/pl-init.c | 77 + src/swipl-devel/src/pl-init.h | 7 src/swipl-devel/src/pl-inline.h | 94 +- src/swipl-devel/src/pl-list.c | 107 +- src/swipl-devel/src/pl-modul.c | 194 ++-- src/swipl-devel/src/pl-modul.h | 6 src/swipl-devel/src/pl-mutex.c | 46 - src/swipl-devel/src/pl-nt.c | 2 src/swipl-devel/src/pl-nt.h | 4 src/swipl-devel/src/pl-op.c | 61 - src/swipl-devel/src/pl-op.h | 2 src/swipl-devel/src/pl-prims.c | 78 - src/swipl-devel/src/pl-prims.h | 10 src/swipl-devel/src/pl-pro.c | 55 - src/swipl-devel/src/pl-pro.h | 4 src/swipl-devel/src/pl-proc.c | 162 +-- src/swipl-devel/src/pl-proc.h | 12 src/swipl-devel/src/pl-qlf.c | 437 ++++----- src/swipl-devel/src/pl-read.c | 215 ++-- src/swipl-devel/src/pl-read.h | 8 src/swipl-devel/src/pl-rec.c | 138 +-- src/swipl-devel/src/pl-setup.c | 29 src/swipl-devel/src/pl-srcfile.c | 83 - src/swipl-devel/src/pl-string.c | 6 src/swipl-devel/src/pl-supervisor.c | 16 src/swipl-devel/src/pl-tabling.c | 328 +++---- src/swipl-devel/src/pl-tabling.h | 8 src/swipl-devel/src/pl-term.c | 19 src/swipl-devel/src/pl-termhash.c | 27 src/swipl-devel/src/pl-termwalk.c | 3 src/swipl-devel/src/pl-thread.c | 156 ++- src/swipl-devel/src/pl-thread.h | 6 src/swipl-devel/src/pl-trace.c | 28 src/swipl-devel/src/pl-trace.h | 20 src/swipl-devel/src/pl-transaction.c | 246 ++--- src/swipl-devel/src/pl-trie.c | 294 +++--- src/swipl-devel/src/pl-trie.h | 4 src/swipl-devel/src/pl-undo.c | 5 src/swipl-devel/src/pl-util.c | 11 src/swipl-devel/src/pl-util.h | 9 src/swipl-devel/src/pl-variant.c | 74 - src/swipl-devel/src/pl-vmi.c | 608 ++++--------- src/swipl-devel/src/pl-wam.c | 53 - src/swipl-devel/src/pl-wam.h | 2 src/swipl-devel/src/pl-wrap.c | 16 src/swipl-devel/src/pl-write.c | 56 - src/swipl-devel/src/pl-write.h | 26 src/swipl-devel/src/pl-zip.c | 37 src/swipl-devel/src/swipl.pc.in | 2 src/swipl-devel/src/wasm/prolog.js | 2 145 files changed, 5032 insertions(+), 4422 deletions(-)
Title: Sustainable Transport Planning
Description: Tools for transport planning with an emphasis on spatial
transport data and non-motorized modes.
The package was originally developed to support the 'Propensity to Cycle Tool', a publicly available strategic cycle network planning tool
(Lovelace et al. 2017) <doi:10.5198/jtlu.2016.862>, but has since been
extended to support public transport routing and accessibility analysis
(Moreno-Monroy et al. 2017) <doi:10.1016/j.jtrangeo.2017.08.012> and
routing with locally hosted routing engines such as 'OSRM'
(Lowans et al. 2023) <doi:10.1016/j.enconman.2023.117337>.
The main functions are for creating and manipulating geographic "desire
lines" from origin-destination (OD) data (building on the 'od'
package); calculating routes on the transport network locally and via
interfaces to routing services such as <https://cyclestreets.net/>
(Desjardins et al. 2021) <doi:10.1007/s11116-021-10197-1>;
and calculating route segment attributes such as bearing. The package
imp [...truncated...]
Author: Robin Lovelace [aut, cre] ,
Richard Ellison [aut],
Malcolm Morgan [aut] ,
Barry Rowlingson [ctb],
Nick Bearman [ctb],
Nikolai Berkoff [ctb],
Scott Chamberlain [rev] ,
Mark Padgham [ctb],
Zhao Wang [ctb] ,
Andrea Gilardi [ctb] ,
Josiah Parry [ctb]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 1.2.0 dated 2024-04-26 and 1.2.1 dated 2024-05-01
DESCRIPTION | 8 +- MD5 | 138 +++++++++++++++++------------------ NEWS.md | 4 + R/linefuns.R | 30 +++---- R/stplanr-package.R | 3 README.md | 6 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/merging-route-networks.html | 2 inst/doc/stplanr-od.html | 5 - inst/doc/stplanr-paper.html | 5 - inst/doc/stplanr-parallel.html | 2 inst/doc/stplanr-route-nets.R | 46 +++++------ inst/doc/stplanr-route-nets.html | 16 ---- inst/doc/stplanr-routing.R | 8 +- inst/doc/stplanr-routing.html | 8 -- inst/doc/stplanr.R | 68 ++++++++--------- inst/doc/stplanr.html | 136 +++++++++------------------------- man/angle_diff.Rd | 2 man/bbox_scale.Rd | 2 man/bind_sf.Rd | 2 man/cents_sf.Rd | 2 man/destinations_sf.Rd | 2 man/flow_dests.Rd | 2 man/flowlines_sf.Rd | 2 man/geo_buffer.Rd | 2 man/geo_length.Rd | 2 man/geo_projected.Rd | 2 man/geo_select_aeq.Rd | 2 man/geo_toptail.Rd | 2 man/is_linepoint.Rd | 2 man/line2df.Rd | 2 man/line2points.Rd | 2 man/line_bearing.Rd | 2 man/line_breakup.Rd | 2 man/line_midpoint.Rd | 2 man/line_segment.Rd | 16 +++- man/line_via.Rd | 2 man/mats2line.Rd | 2 man/n_segments.Rd | 2 man/n_vertices.Rd | 2 man/od2line.Rd | 4 - man/od2odf.Rd | 4 - man/od_aggregate_from.Rd | 4 - man/od_aggregate_to.Rd | 4 - man/od_coords.Rd | 2 man/od_coords2line.Rd | 2 man/od_data_lines.Rd | 2 man/od_data_routes.Rd | 2 man/od_data_sample.Rd | 2 man/od_id.Rd | 2 man/od_id_order.Rd | 2 man/od_oneway.Rd | 4 - man/od_to_odmatrix.Rd | 4 - man/odmatrix_to_od.Rd | 4 - man/onewaygeo.Rd | 2 man/osm_net_example.Rd | 2 man/points2flow.Rd | 4 - man/points2line.Rd | 2 man/points2odf.Rd | 4 - man/quadrant.Rd | 2 man/read_table_builder.Rd | 2 man/route_dodgr.Rd | 4 - man/route_network_sf.Rd | 2 man/route_network_small.Rd | 2 man/route_osrm.Rd | 4 - man/routes_fast_sf.Rd | 2 man/routes_slow_sf.Rd | 2 man/toptail_buff.Rd | 2 man/zones_sf.Rd | 2 70 files changed, 280 insertions(+), 345 deletions(-)
Title: 'RStudio' Package Manager
Description: Enables binary package installations on Linux distributions.
Provides access to 'RStudio' public repositories at
<https://packagemanager.posit.co>, and transparent management of
system requirements without administrative privileges. Currently supported
distributions are 'CentOS' / 'RHEL' 7-9, and several 'RHEL' derivatives
('Rocky Linux', 'AlmaLinux', 'Oracle Linux', and 'Amazon Linux' 2),
'openSUSE' / 'SLES' 15.4-5, 'Debian' 11-12, and 'Ubuntu' LTS 20-22.
Author: Inaki Ucar [aut, cph, cre] ,
R Core Team [aut, cph]
Maintainer: Inaki Ucar <iucar@fedoraproject.org>
Diff between rspm versions 0.5.0 dated 2023-11-25 and 0.5.1 dated 2024-05-01
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 1 + NEWS.md | 6 ++++++ R/manager.R | 27 ++++++++++++++++++++++----- R/rspm.R | 2 +- README.md | 4 ++-- inst/tinytest/test_integration.R | 2 +- man/manager.Rd | 7 ++++++- man/rspm-package.Rd | 2 +- 10 files changed, 53 insertions(+), 24 deletions(-)
Title: High Dimensional Geometry, Set Operations, Projection, and
Inference Using Kernel Density Estimation, Support Vector
Machines, and Convex Hulls
Description: Estimates the shape and volume of high-dimensional datasets and performs set operations: intersection / overlap, union, unique components, inclusion test, and hole detection. Uses stochastic geometry approach to high-dimensional kernel density estimation, support vector machine delineation, and convex hull generation. Applications include modeling trait and niche hypervolumes and species distribution modeling.
Author: Benjamin Blonder, with contributions from Cecina Babich Morrow, Stuart Brown, Gregoire Butruille, Daniel Chen, Alex Laini, and David J. Harris
Maintainer: Benjamin Blonder <benjamin.blonder@berkeley.edu>
Diff between hypervolume versions 3.1.3 dated 2023-09-14 and 3.1.4 dated 2024-05-01
DESCRIPTION | 10 ++++++---- MD5 | 8 ++++---- NAMESPACE | 2 -- build/partial.rdb |binary man/hypervolume_set.Rd | 2 +- 5 files changed, 11 insertions(+), 11 deletions(-)
Title: Convert Addresses to Standard Inputs
Description: Efficient tools for parsing and standardizing Australian
addresses from textual data. It utilizes optimized algorithms to accurately identify and
extract components of addresses, such as street names, types, and postcodes, especially
for large batched data in contexts where sending addresses to internet services may be
slow or inappropriate. The core functionality is built on fast string processing techniques
to handle variations in address formats and abbreviations commonly found in Australian
address data. Designed for data scientists, urban planners, and logistics analysts, the
package facilitates the cleaning and normalization of address information, supporting
better data integration and analysis in urban studies, geography, and related fields.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between healthyAddress versions 0.4.1 dated 2024-04-27 and 0.4.2 dated 2024-05-01
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/latlon.c | 6 +++--- 3 files changed, 8 insertions(+), 8 deletions(-)
More information about healthyAddress at CRAN
Permanent link
Title: Analysis of Variance from General Principles
Description: Analysis of complex ANOVA models with any combination of orthogonal/nested and fixed/random factors, as described by Underwood (1997). There are two restrictions: (i) data must be balanced; (ii) fixed nested factors are not allowed. Homogeneity of variances is checked using Cochran's C test and 'a posteriori' comparisons of means are done using Student-Newman-Keuls (SNK) procedure. For those terms with no denominator in the F-ratio calculation, pooled mean squares and quasi F-ratios are provided. Magnitute of effects are assessed by components of variation.
Author: Leonardo Sandrini-Neto [aut, cre]
,
Eliandro Gilbert [aut],
Mauricio Camargo [aut]
Maintainer: Leonardo Sandrini-Neto <leonardosandrini@ufpr.br>
Diff between GAD versions 1.1.1 dated 2011-02-21 and 2.0 dated 2024-05-01
GAD-1.1.1/GAD/inst |only GAD-2.0/GAD/DESCRIPTION | 38 +-- GAD-2.0/GAD/MD5 | 56 ++-- GAD-2.0/GAD/NAMESPACE | 28 +- GAD-2.0/GAD/R/C.test.R | 70 ++++-- GAD-2.0/GAD/R/GAD-package.R |only GAD-2.0/GAD/R/as.fixed.R | 27 +- GAD-2.0/GAD/R/as.random.R | 27 +- GAD-2.0/GAD/R/comp.var.r |only GAD-2.0/GAD/R/crabs.R |only GAD-2.0/GAD/R/estimates.R | 372 ++++++++++++++++++++++----------- GAD-2.0/GAD/R/gad.R | 181 +++++++++++++--- GAD-2.0/GAD/R/is.fixed.R | 22 + GAD-2.0/GAD/R/is.random.R | 22 + GAD-2.0/GAD/R/pooling.R |only GAD-2.0/GAD/R/rats.R |only GAD-2.0/GAD/R/rohl95.R |only GAD-2.0/GAD/R/snails.R |only GAD-2.0/GAD/R/snk.test.R | 461 +++++++++++++++++++++++++++++------------ GAD-2.0/GAD/data/crabs.rda |only GAD-2.0/GAD/man/C.test.Rd | 84 ++++--- GAD-2.0/GAD/man/GAD-package.Rd | 86 +------ GAD-2.0/GAD/man/as.fixed.Rd | 32 +- GAD-2.0/GAD/man/as.random.Rd | 66 +++-- GAD-2.0/GAD/man/comp.var.Rd |only GAD-2.0/GAD/man/crabs.Rd |only GAD-2.0/GAD/man/estimates.Rd | 114 +++++----- GAD-2.0/GAD/man/gad.Rd | 112 +++++---- GAD-2.0/GAD/man/is.fixed.Rd | 59 ++--- GAD-2.0/GAD/man/is.random.Rd | 56 ++-- GAD-2.0/GAD/man/pooling.Rd |only GAD-2.0/GAD/man/rats.Rd | 37 +-- GAD-2.0/GAD/man/rohlf95.Rd | 38 ++- GAD-2.0/GAD/man/snails.Rd | 43 ++- GAD-2.0/GAD/man/snk.test.Rd | 129 ++++++----- 35 files changed, 1369 insertions(+), 791 deletions(-)
Title: Tidy and Geospatial Kernel Smoothing
Description: Extensions of the kernel smoothing functions from the 'ks' package for compatibility with the tidyverse and geospatial ecosystems <doi:10.48550/arXiv.2203.01686>.
Author: Tarn Duong [aut, cre]
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between eks versions 1.0.4 dated 2023-05-25 and 1.0.5 dated 2024-05-01
CHANGELOG | 8 +++ DESCRIPTION | 9 ++- MD5 | 60 ++++++++++++------------- R/sf-ks-prelim.R | 101 ++++++++++++++++++++++++++++--------------- R/sf-ks.R | 2 R/tidy-ks-prelim.R | 4 - build/vignette.rds |binary inst/doc/tidysf_kde.R | 15 ++---- inst/doc/tidysf_kde.Rmd | 3 - inst/doc/tidysf_kde.html | 21 ++++---- man/contour.Rd | 21 +++++--- man/eks-package.Rd | 1 man/geom_contour_ks.Rd | 14 ++--- man/geom_point_ks.Rd | 12 ++--- man/grevillea.Rd | 2 man/tidyst_kcde.Rd | 21 +++----- man/tidyst_kcurv.Rd | 14 ++--- man/tidyst_kda.Rd | 35 ++++++-------- man/tidyst_kdcde.Rd | 6 +- man/tidyst_kdde.Rd | 44 ++++++++---------- man/tidyst_kde.Rd | 37 +++++++-------- man/tidyst_kde_balloon.Rd | 20 +++----- man/tidyst_kde_boundary.Rd | 29 +++++------- man/tidyst_kde_local_test.Rd | 10 ++-- man/tidyst_kdr.Rd | 17 +++---- man/tidyst_kfs.Rd | 15 ++---- man/tidyst_kms.Rd | 19 +++----- man/tidyst_kquiver.Rd | 24 ++++------ man/tidyst_kroc.Rd | 7 +- man/tidyst_ksupp.Rd | 47 +++++++++++--------- vignettes/tidysf_kde.Rmd | 3 - 31 files changed, 319 insertions(+), 302 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and a R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 0.10.1 dated 2024-04-02 and 0.10.2 dated 2024-05-01
duckdb-0.10.1/duckdb/src/duckdb/src/common/cycle_counter.cpp |only duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/common/cycle_counter.hpp |only duckdb-0.10.1/duckdb/src/duckdb/src/include/duckdb/optimizer/column_lifetime_optimizer.hpp |only duckdb-0.10.1/duckdb/src/duckdb/third_party/fsst/fsst_avx512.cpp |only duckdb-0.10.1/duckdb/src/duckdb/third_party/fsst/fsst_avx512.inc |only duckdb-0.10.1/duckdb/src/duckdb/third_party/fsst/fsst_avx512_unroll1.inc |only duckdb-0.10.1/duckdb/src/duckdb/third_party/fsst/fsst_avx512_unroll2.inc |only duckdb-0.10.1/duckdb/src/duckdb/third_party/fsst/fsst_avx512_unroll3.inc |only duckdb-0.10.1/duckdb/src/duckdb/third_party/fsst/fsst_avx512_unroll4.inc |only duckdb-0.10.1/duckdb/src/duckdb/third_party/re2/util/pod_array.h |only duckdb-0.10.1/duckdb/src/duckdb/third_party/re2/util/sparse_array.h |only duckdb-0.10.1/duckdb/src/duckdb/third_party/re2/util/sparse_set.h |only duckdb-0.10.2/duckdb/DESCRIPTION | 6 duckdb-0.10.2/duckdb/MD5 | 1412 duckdb-0.10.2/duckdb/NEWS.md | 22 duckdb-0.10.2/duckdb/R/backend-dbplyr__duckdb_connection.R | 24 duckdb-0.10.2/duckdb/R/cpp11.R | 4 duckdb-0.10.2/duckdb/R/dbFetch__duckdb_result.R | 2 duckdb-0.10.2/duckdb/R/dbQuoteLiteral__duckdb_connection.R | 21 duckdb-0.10.2/duckdb/inst/include/cpp11/r_vector.hpp | 3 duckdb-0.10.2/duckdb/src/Makevars | 6 duckdb-0.10.2/duckdb/src/Makevars.win | 6 duckdb-0.10.2/duckdb/src/cpp11.cpp | 9 duckdb-0.10.2/duckdb/src/duckdb/extension/parquet/column_reader.cpp | 15 duckdb-0.10.2/duckdb/src/duckdb/extension/parquet/column_writer.cpp | 51 duckdb-0.10.2/duckdb/src/duckdb/extension/parquet/include/parquet_writer.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/extension/parquet/parquet_extension.cpp | 33 duckdb-0.10.2/duckdb/src/duckdb/extension/parquet/parquet_metadata.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/extension/parquet/parquet_writer.cpp | 6 duckdb-0.10.2/duckdb/src/duckdb/extension/parquet/zstd_file_system.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/catalog.cpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/catalog_entry.cpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/catalog_entry/duck_schema_entry.cpp | 26 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/catalog_entry/duck_table_entry.cpp | 17 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/catalog_entry/index_catalog_entry.cpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/catalog_entry/sequence_catalog_entry.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 13 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/catalog_search_path.cpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/catalog_set.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/default/default_functions.cpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/default/default_schemas.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/default/default_views.cpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/dependency_catalog_set.cpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/dependency_list.cpp | 100 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/dependency_manager.cpp | 121 duckdb-0.10.2/duckdb/src/duckdb/src/catalog/duck_catalog.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/common/adbc/adbc.cpp | 332 duckdb-0.10.2/duckdb/src/duckdb/src/common/arrow/appender/union_data.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/common/box_renderer.cpp | 24 duckdb-0.10.2/duckdb/src/duckdb/src/common/crypto/md5.cpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/common/enum_util.cpp | 308 duckdb-0.10.2/duckdb/src/duckdb/src/common/enums/expression_type.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/common/enums/optimizer_type.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/common/file_system.cpp | 73 duckdb-0.10.2/duckdb/src/duckdb/src/common/filename_pattern.cpp | 26 duckdb-0.10.2/duckdb/src/duckdb/src/common/gzip_file_system.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/common/http_state.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/common/local_file_system.cpp | 143 duckdb-0.10.2/duckdb/src/duckdb/src/common/multi_file_reader.cpp | 76 duckdb-0.10.2/duckdb/src/duckdb/src/common/row_operations/row_matcher.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/common/serializer/buffered_file_reader.cpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/common/serializer/buffered_file_writer.cpp | 45 duckdb-0.10.2/duckdb/src/duckdb/src/common/string_util.cpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/common/tree_renderer.cpp | 99 duckdb-0.10.2/duckdb/src/duckdb/src/common/types.cpp | 9 duckdb-0.10.2/duckdb/src/duckdb/src/common/types/bit.cpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/common/types/data_chunk.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/common/types/hash.cpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/common/types/hyperloglog.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/common/types/row/tuple_data_allocator.cpp | 13 duckdb-0.10.2/duckdb/src/duckdb/src/common/types/row/tuple_data_layout.cpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/common/types/uuid.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/common/types/vector.cpp | 36 duckdb-0.10.2/duckdb/src/duckdb/src/common/vector_operations/comparison_operators.cpp | 38 duckdb-0.10.2/duckdb/src/duckdb/src/common/vector_operations/generators.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/common/vector_operations/is_distinct_from.cpp | 377 duckdb-0.10.2/duckdb/src/duckdb/src/common/vector_operations/vector_hash.cpp | 75 duckdb-0.10.2/duckdb/src/duckdb/src/common/virtual_file_system.cpp | 53 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/aggregate/algebraic/avg.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/aggregate/distributive/minmax.cpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/aggregate/distributive/sum.cpp | 47 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/aggregate/holistic/quantile.cpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/aggregate/nested/list.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/core_functions.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/function_list.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/scalar/date/time_bucket.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/scalar/generic/system_functions.cpp | 63 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/scalar/list/array_slice.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/scalar/list/flatten.cpp | 125 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/scalar/list/list_aggregates.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/scalar/list/list_sort.cpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/scalar/math/numeric.cpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/scalar/string/hex.cpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/core_functions/scalar/string/repeat.cpp | 33 duckdb-0.10.2/duckdb/src/duckdb/src/execution/column_binding_resolver.cpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/execution/expression_executor.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/execution/expression_executor/execute_comparison.cpp | 199 duckdb-0.10.2/duckdb/src/duckdb/src/execution/expression_executor/execute_function.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/execution/expression_executor_state.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/execution/index/art/art.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/execution/index/unknown_index.cpp | 26 duckdb-0.10.2/duckdb/src/duckdb/src/execution/join_hashtable.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/execution/nested_loop_join/nested_loop_join_mark.cpp | 1 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/csv_scanner/buffer_manager/csv_buffer.cpp | 17 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/csv_scanner/buffer_manager/csv_buffer_manager.cpp | 33 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/csv_scanner/buffer_manager/csv_file_handle.cpp | 18 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/scanner_boundary.cpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/csv_scanner/scanner/string_value_scanner.cpp | 515 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/csv_sniffer.cpp | 13 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/dialect_detection.cpp | 29 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/csv_scanner/sniffer/type_detection.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/csv_scanner/state_machine/csv_state_machine_cache.cpp | 20 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/csv_scanner/table_function/csv_file_scanner.cpp | 27 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/csv_scanner/table_function/global_csv_state.cpp | 227 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/csv_scanner/util/csv_error.cpp | 166 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/csv_scanner/util/csv_reader_options.cpp | 109 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/helper/physical_vacuum.cpp | 25 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/join/physical_iejoin.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/persistent/csv_rejects_table.cpp | 143 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_copy_to_file.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_insert.cpp | 19 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_database.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/persistent/physical_export.cpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/execution/operator/schema/physical_attach.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/execution/physical_plan/plan_simple.cpp | 9 duckdb-0.10.2/duckdb/src/duckdb/src/execution/physical_plan/plan_vacuum.cpp |only duckdb-0.10.2/duckdb/src/duckdb/src/execution/physical_plan_generator.cpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/execution/radix_partitioned_hashtable.cpp | 191 duckdb-0.10.2/duckdb/src/duckdb/src/execution/reservoir_sample.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/execution/window_executor.cpp | 76 duckdb-0.10.2/duckdb/src/duckdb/src/execution/window_segment_tree.cpp | 43 duckdb-0.10.2/duckdb/src/duckdb/src/function/aggregate/sorted_aggregate_function.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/function/cast/enum_casts.cpp | 73 duckdb-0.10.2/duckdb/src/duckdb/src/function/cast/vector_cast_helpers.cpp | 19 duckdb-0.10.2/duckdb/src/duckdb/src/function/cast_rules.cpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/function/compression_config.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/function/function_binder.cpp | 89 duckdb-0.10.2/duckdb/src/duckdb/src/function/function_set.cpp | 18 duckdb-0.10.2/duckdb/src/duckdb/src/function/pragma/pragma_queries.cpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/function/scalar/compressed_materialization/compress_integral.cpp | 26 duckdb-0.10.2/duckdb/src/duckdb/src/function/scalar/compressed_materialization/compress_string.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/function/scalar/list/list_select.cpp | 7 duckdb-0.10.2/duckdb/src/duckdb/src/function/scalar/list/list_zip.cpp | 9 duckdb-0.10.2/duckdb/src/duckdb/src/function/scalar/operators/arithmetic.cpp | 92 duckdb-0.10.2/duckdb/src/duckdb/src/function/scalar/sequence/nextval.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/function/scalar/strftime_format.cpp | 56 duckdb-0.10.2/duckdb/src/duckdb/src/function/scalar/string/caseconvert.cpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/function/scalar/string/length.cpp | 25 duckdb-0.10.2/duckdb/src/duckdb/src/function/scalar/string/like.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/function/scalar/string/regexp/regexp_extract_all.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/function/scalar/system/aggregate_export.cpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/arrow.cpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/arrow/arrow_array_scan_state.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/copy_csv.cpp | 32 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/read_csv.cpp | 91 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/sniff_csv.cpp | 20 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/system/duckdb_constraints.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/system/duckdb_databases.cpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/system/duckdb_extensions.cpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/system/duckdb_sequences.cpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/system/duckdb_tables.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/system/pragma_metadata_info.cpp | 11 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/system/pragma_table_info.cpp | 16 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/table_scan.cpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry.hpp | 7 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_index_entry.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/duck_schema_entry.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/sequence_catalog_entry.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_set.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_functions.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/catalog/dependency.hpp | 30 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_list.hpp | 45 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_manager.hpp | 33 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/catalog/duck_catalog.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/catalog/standard_entry.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/allocator.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/arrow/arrow_wrapper.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/bit_utils.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/box_renderer.hpp | 26 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/crypto/md5.hpp | 1 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/enum_util.hpp | 32 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/enums/expression_type.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/exception.hpp | 115 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/exception/binder_exception.hpp | 24 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/exception/catalog_exception.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/exception/conversion_exception.hpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/exception/http_exception.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/exception/parser_exception.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/exception/transaction_exception.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/exception_format_value.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/extra_type_info.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/file_open_flags.hpp |only duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/file_opener.hpp | 13 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/file_system.hpp | 71 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/filename_pattern.hpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/fixed_size_map.hpp | 26 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/helper.hpp | 89 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/http_state.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/hugeint.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/index_vector.hpp | 20 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/local_file_system.hpp | 23 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/memory_safety.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/multi_file_reader_options.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/opener_file_system.hpp | 78 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/operator/abs.hpp | 16 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/optional_ptr.hpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/pipe_file_system.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/platform.h | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/printer.hpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/profiler.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/progress_bar/display/terminal_progress_bar_display.hpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/random_engine.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/re2_regex.hpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_file_reader.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_file_writer.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/serializer/deserialization_data.hpp | 23 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/serializer/deserializer.hpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/serializer/serialization_traits.hpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/serializer/serializer.hpp | 16 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/sort/duckdb_pdqsort.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/sort/partition_state.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/string_util.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/tree_renderer.hpp | 47 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/typedefs.hpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types.hpp | 24 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/cast_helpers.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/column/column_data_collection.hpp | 20 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/column/column_data_collection_iterators.hpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/column/partitioned_column_data.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/constraint_conflict_info.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/data_chunk.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/date.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/hash.hpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/hyperloglog.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/interval.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/row/partitioned_tuple_data.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/row/tuple_data_layout.hpp | 13 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/row/tuple_data_segment.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/selection_vector.hpp | 24 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/string_heap.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/string_type.hpp | 43 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/time.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/timestamp.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/uuid.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp | 22 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/types/vector_buffer.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/uhugeint.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/union_by_name.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/unique_ptr.hpp | 29 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/vector.hpp | 42 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/aggregate_executor.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/general_cast.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/generic_executor.hpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/unary_executor.hpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/vector_operations.hpp | 82 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/common/virtual_file_system.hpp | 21 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/distributive_functions.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/core_functions/aggregate/sum_helpers.hpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/core_functions/function_list.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/core_functions/lambda_functions.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/aggregate_hashtable.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/column_binding_resolver.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor_state.hpp | 7 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/merge_sort_tree.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/aggregate_object.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/distinct_aggregate_data.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/base_scanner.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/column_count_scanner.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_buffer.hpp | 15 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_buffer_manager.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_error.hpp | 62 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_file_handle.hpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_file_scanner.hpp | 1 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_option.hpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_reader_options.hpp | 34 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/csv_state_machine.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/global_csv_state.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/skip_scanner.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/csv_scanner/string_value_scanner.hpp | 75 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_batch_collector.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_explain_analyze.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_prepare.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_set.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_vacuum.hpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/csv_rejects_table.hpp | 21 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator_states.hpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/physical_plan_generator.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/window_executor.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/execution/window_segment_tree.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/aggregate_function.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/cast/cast_function_set.hpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/cast/default_casts.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/cast/vector_cast_helpers.hpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/compression_function.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/copy_function.hpp | 23 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/function.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/function_binder.hpp | 47 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/function_serialization.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/function_set.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/pragma_function.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/regexp.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/strftime_format.hpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/string_functions.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/scalar_function.hpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/table/arrow.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/table/arrow/arrow_duck_schema.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/table/read_csv.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/table/table_scan.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/table_function.hpp | 23 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/function/udf_function.hpp | 126 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/appender.hpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/attached_database.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/buffered_data/buffered_data.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/buffered_data/simple_buffered_data.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/capi/capi_internal.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/chunk_scan_state/query_result.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/client_context_file_opener.hpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/client_data.hpp | 1 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/client_properties.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/config.hpp | 19 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/connection.hpp | 53 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/database.hpp | 22 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/database_file_opener.hpp |only duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/database_path_and_type.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/error_manager.hpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/extension_entries.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/extension_helper.hpp | 1 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/external_dependencies.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/prepared_statement.hpp | 16 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/query_profiler.hpp | 61 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/query_result.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/relation.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/relation/query_relation.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/secret/secret.hpp | 18 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/secret/secret_manager.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/secret/secret_storage.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/main/settings.hpp | 148 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/column_lifetime_analyzer.hpp |only duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/compressed_materialization.hpp | 24 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/cardinality_estimator.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/cost_model.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_node.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/query_graph.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/query_graph_manager.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/relation_manager.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/expression_matcher.hpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/function_matcher.hpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/type_matcher.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/optimizer.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/statistics_propagator.hpp | 56 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/optimizer/unnest_rewriter.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parallel/event.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parallel/executor_task.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parallel/interrupt.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline_event.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/column_list.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/constraints/unique_constraint.hpp | 57 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/bound_expression.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/positional_reference_expression.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/star_expression.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_scalar_function_info.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_function_info.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_info.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/copy_database_info.hpp |only duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_function_info.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_index_info.hpp | 1 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_info.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_macro_info.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_pragma_function_info.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_secret_info.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/extra_drop_info.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/parse_info.hpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/vacuum_info.hpp | 7 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parser.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/parser_extension.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/query_error_context.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/bind_context.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp | 25 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_case_expression.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_cast_expression.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_default_expression.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_expanded_expression.hpp |only duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_subquery_expression.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder.hpp | 1 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/base_select_binder.hpp | 13 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/column_alias_binder.hpp | 7 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/group_binder.hpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/having_binder.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/order_binder.hpp | 20 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/qualify_binder.hpp | 9 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/select_bind_state.hpp |only duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/select_binder.hpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/table_function_binder.hpp | 7 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/expression_iterator.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/filter/conjunction_filter.hpp | 9 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/logical_operator.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/logical_tokens.hpp | 1 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/list.hpp | 1 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_copy_database.hpp | 16 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create_secret.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_cteref.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delim_get.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_dummy_scan.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_explain.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_export.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_expression_get.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_extension_operator.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_materialized_cte.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_pragma.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_prepare.hpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_recursive_cte.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_reset.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_set.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_vacuum.hpp |only duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/operator_extension.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/parsed_data/bound_create_table_info.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/query_node/bound_select_node.hpp | 9 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/planner/subquery/flatten_dependent_join.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/arena_allocator.hpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/row_group_writer.hpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/string_checkpoint_state.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/table_data_writer.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint_manager.hpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_analyze.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_compress.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_fetch.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/alp/alp_scan.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/algorithm/alprd.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/alprd_analyze.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/alprd_compress.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/alprd_fetch.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/alprd/alprd_scan.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/algorithm/flag_buffer.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/algorithm/leading_zero_buffer.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_analyze.hpp | 1 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_fetch.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_scan.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_analyze.hpp | 1 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_fetch.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_scan.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/data_pointer.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/index.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/magic_bytes.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/object_cache.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/optimistic_data_writer.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/partial_block_manager.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/single_file_block_manager.hpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/standard_buffer_manager.hpp | 48 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/statistics/numeric_stats_union.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/statistics/segment_statistics.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/storage_info.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/storage_manager.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/string_uncompressed.hpp | 15 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/append_state.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/chunk_info.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/column_checkpoint_state.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data.hpp | 11 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/data_table_info.hpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group_segment_tree.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/row_version_manager.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/scan_state.hpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/segment_lock.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/segment_tree.hpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/standard_column_data.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/table_index_list.hpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/table_statistics.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table/update_segment.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/table_storage_info.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/storage/write_ahead_log.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/transaction/delete_info.hpp | 21 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/transaction/transaction.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/transaction/transaction_data.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/transaction/undo_buffer.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/include/duckdb/transaction/update_info.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/main/appender.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/main/attached_database.cpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/main/capi/arrow-c.cpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/main/capi/cast/utils-c.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/main/capi/duckdb-c.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/main/capi/pending-c.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/main/capi/prepared-c.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/main/capi/result-c.cpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/main/client_context.cpp | 16 duckdb-0.10.2/duckdb/src/duckdb/src/main/client_context_file_opener.cpp | 18 duckdb-0.10.2/duckdb/src/duckdb/src/main/client_data.cpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/main/config.cpp | 164 duckdb-0.10.2/duckdb/src/duckdb/src/main/database.cpp | 38 duckdb-0.10.2/duckdb/src/duckdb/src/main/database_manager.cpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/main/database_path_and_type.cpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/main/error_manager.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/main/extension/extension_alias.cpp | 18 duckdb-0.10.2/duckdb/src/duckdb/src/main/extension/extension_helper.cpp | 15 duckdb-0.10.2/duckdb/src/duckdb/src/main/extension/extension_install.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/main/extension/extension_load.cpp | 148 duckdb-0.10.2/duckdb/src/duckdb/src/main/query_profiler.cpp | 119 duckdb-0.10.2/duckdb/src/duckdb/src/main/relation.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/main/secret/secret_manager.cpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/main/secret/secret_storage.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/main/settings/settings.cpp | 146 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/column_lifetime_analyzer.cpp | 9 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/compressed_materialization.cpp | 54 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/compressed_materialization/compress_aggregate.cpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/cse_optimizer.cpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/join_order/cardinality_estimator.cpp | 16 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/optimizer.cpp | 31 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_cross_product.cpp | 21 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_inner_join.cpp | 11 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_set_operation.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/remove_unused_columns.cpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/rule/ordered_aggregate_optimizer.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_aggregate.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_between.cpp | 16 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_case.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_cast.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_columnref.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_comparison.cpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_conjunction.cpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_constant.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_function.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_operator.cpp | 20 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_aggregate.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_cross_product.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_filter.cpp | 21 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_get.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_join.cpp | 18 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_limit.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_order.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_projection.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_set_operation.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_window.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/optimizer/statistics_propagator.cpp | 57 duckdb-0.10.2/duckdb/src/duckdb/src/parallel/pipeline_finish_event.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/parallel/task_scheduler.cpp | 9 duckdb-0.10.2/duckdb/src/duckdb/src/parser/constraints/unique_constraint.cpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/parser/parsed_data/create_index_info.cpp | 64 duckdb-0.10.2/duckdb/src/duckdb/src/parser/parsed_data/vacuum_info.cpp | 1 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transform/expression/transform_function.cpp | 18 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transform/expression/transform_subquery.cpp | 24 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transform/helpers/transform_cte.cpp | 9 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transform/statement/transform_create_function.cpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transform/statement/transform_create_index.cpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transform/statement/transform_delete.cpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transform/statement/transform_insert.cpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transform/statement/transform_pivot_stmt.cpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transform/statement/transform_pragma.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transform/statement/transform_select.cpp | 7 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transform/statement/transform_select_node.cpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transform/statement/transform_update.cpp | 7 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transform/statement/transform_use.cpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/parser/transformer.cpp | 16 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder.cpp | 84 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/expression/bind_aggregate_expression.cpp | 57 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/expression/bind_unnest_expression.cpp | 11 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/expression/bind_window_expression.cpp | 62 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/query_node/bind_cte_node.cpp | 45 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/query_node/bind_select_node.cpp | 249 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/query_node/bind_setop_node.cpp | 54 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/query_node/plan_cte_node.cpp | 29 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/query_node/plan_subquery.cpp | 20 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/statement/bind_copy.cpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/statement/bind_copy_database.cpp | 51 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/statement/bind_create.cpp | 23 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/statement/bind_create_table.cpp | 20 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/statement/bind_insert.cpp | 23 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/statement/bind_pragma.cpp | 6 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/statement/bind_set.cpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/statement/bind_vacuum.cpp | 135 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/tableref/bind_basetableref.cpp | 100 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/tableref/bind_pivot.cpp | 3 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/tableref/bind_subqueryref.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/planner/binder/tableref/bind_table_function.cpp | 10 duckdb-0.10.2/duckdb/src/duckdb/src/planner/expression/bound_cast_expression.cpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/planner/expression/bound_expanded_expression.cpp |only duckdb-0.10.2/duckdb/src/duckdb/src/planner/expression_binder/base_select_binder.cpp | 69 duckdb-0.10.2/duckdb/src/duckdb/src/planner/expression_binder/column_alias_binder.cpp | 13 duckdb-0.10.2/duckdb/src/duckdb/src/planner/expression_binder/group_binder.cpp | 9 duckdb-0.10.2/duckdb/src/duckdb/src/planner/expression_binder/having_binder.cpp | 24 duckdb-0.10.2/duckdb/src/duckdb/src/planner/expression_binder/lateral_binder.cpp | 16 duckdb-0.10.2/duckdb/src/duckdb/src/planner/expression_binder/order_binder.cpp | 68 duckdb-0.10.2/duckdb/src/duckdb/src/planner/expression_binder/qualify_binder.cpp | 25 duckdb-0.10.2/duckdb/src/duckdb/src/planner/expression_binder/select_bind_state.cpp |only duckdb-0.10.2/duckdb/src/duckdb/src/planner/expression_binder/select_binder.cpp | 48 duckdb-0.10.2/duckdb/src/duckdb/src/planner/expression_binder/table_function_binder.cpp | 26 duckdb-0.10.2/duckdb/src/duckdb/src/planner/logical_operator.cpp | 23 duckdb-0.10.2/duckdb/src/duckdb/src/planner/operator/logical_copy_database.cpp | 18 duckdb-0.10.2/duckdb/src/duckdb/src/planner/operator/logical_delete.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/planner/operator/logical_get.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/planner/operator/logical_insert.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/planner/operator/logical_update.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/planner/operator/logical_vacuum.cpp |only duckdb-0.10.2/duckdb/src/duckdb/src/planner/planner.cpp | 8 duckdb-0.10.2/duckdb/src/duckdb/src/planner/subquery/flatten_dependent_join.cpp | 53 duckdb-0.10.2/duckdb/src/duckdb/src/storage/arena_allocator.cpp | 9 duckdb-0.10.2/duckdb/src/duckdb/src/storage/buffer/buffer_pool_reservation.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/storage/buffer_manager.cpp | 12 duckdb-0.10.2/duckdb/src/duckdb/src/storage/checkpoint/table_data_writer.cpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/storage/checkpoint_manager.cpp | 23 duckdb-0.10.2/duckdb/src/duckdb/src/storage/compression/bitpacking.cpp | 7 duckdb-0.10.2/duckdb/src/duckdb/src/storage/compression/string_uncompressed.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/storage/data_pointer.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/storage/data_table.cpp | 25 duckdb-0.10.2/duckdb/src/duckdb/src/storage/local_storage.cpp | 13 duckdb-0.10.2/duckdb/src/duckdb/src/storage/magic_bytes.cpp | 11 duckdb-0.10.2/duckdb/src/duckdb/src/storage/partial_block_manager.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/storage/serialization/serialize_logical_operator.cpp | 29 duckdb-0.10.2/duckdb/src/duckdb/src/storage/serialization/serialize_nodes.cpp | 22 duckdb-0.10.2/duckdb/src/duckdb/src/storage/serialization/serialize_parse_info.cpp | 23 duckdb-0.10.2/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp | 65 duckdb-0.10.2/duckdb/src/duckdb/src/storage/standard_buffer_manager.cpp | 26 duckdb-0.10.2/duckdb/src/duckdb/src/storage/statistics/array_stats.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/storage/statistics/base_statistics.cpp | 5 duckdb-0.10.2/duckdb/src/duckdb/src/storage/statistics/list_stats.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/storage/statistics/struct_stats.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/storage/storage_info.cpp | 38 duckdb-0.10.2/duckdb/src/duckdb/src/storage/storage_manager.cpp | 31 duckdb-0.10.2/duckdb/src/duckdb/src/storage/table/chunk_info.cpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/storage/table/column_data.cpp | 154 duckdb-0.10.2/duckdb/src/duckdb/src/storage/table/row_group.cpp | 14 duckdb-0.10.2/duckdb/src/duckdb/src/storage/table/row_version_manager.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/storage/table/standard_column_data.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/storage/table/update_segment.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/src/storage/table_index_list.cpp | 7 duckdb-0.10.2/duckdb/src/duckdb/src/storage/temporary_file_manager.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/storage/wal_replay.cpp | 15 duckdb-0.10.2/duckdb/src/duckdb/src/storage/write_ahead_log.cpp | 7 duckdb-0.10.2/duckdb/src/duckdb/src/transaction/cleanup_state.cpp | 13 duckdb-0.10.2/duckdb/src/duckdb/src/transaction/commit_state.cpp | 15 duckdb-0.10.2/duckdb/src/duckdb/src/transaction/duck_transaction.cpp | 26 duckdb-0.10.2/duckdb/src/duckdb/src/transaction/rollback_state.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/transaction/transaction_context.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/src/transaction/undo_buffer.cpp | 4 duckdb-0.10.2/duckdb/src/duckdb/third_party/fmt/include/fmt/core.h | 5 duckdb-0.10.2/duckdb/src/duckdb/third_party/fsst/fsst.h | 2 duckdb-0.10.2/duckdb/src/duckdb/third_party/fsst/libfsst.cpp | 141 duckdb-0.10.2/duckdb/src/duckdb/third_party/fsst/libfsst.hpp | 13 duckdb-0.10.2/duckdb/src/duckdb/third_party/hyperloglog/hyperloglog.hpp | 4 duckdb-0.10.2/duckdb/src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp | 9 duckdb-0.10.2/duckdb/src/duckdb/third_party/libpg_query/include/parser/gram.hpp | 3 duckdb-0.10.2/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |26733 +++++----- duckdb-0.10.2/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_scan.cpp | 843 duckdb-0.10.2/duckdb/src/duckdb/third_party/lz4 |only duckdb-0.10.2/duckdb/src/duckdb/third_party/parquet/parquet_types.cpp | 3 duckdb-0.10.2/duckdb/src/duckdb/third_party/parquet/parquet_types.h | 3 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/bitmap256.cc |only duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/bitmap256.h | 38 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/bitstate.cc | 55 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/compile.cc | 310 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/dfa.cc | 355 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/filtered_re2.cc | 22 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/filtered_re2.h | 48 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/mimics_pcre.cc | 32 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/nfa.cc | 222 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/onepass.cc | 21 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/parse.cc | 325 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/perl_groups.cc | 70 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/pod_array.h |only duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/prefilter.cc | 80 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/prefilter.h | 26 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/prefilter_tree.cc | 154 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/prefilter_tree.h | 9 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/prog.cc | 373 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/prog.h | 126 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/re2.cc | 556 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/re2.h | 470 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/regexp.cc | 242 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/regexp.h | 85 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/set.cc | 57 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/set.h | 17 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/simplify.cc | 91 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/sparse_array.h |only duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/sparse_set.h |only duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/stringpiece.cc | 2 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/stringpiece.h | 19 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/tostring.cc | 14 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/unicode_casefold.cc | 49 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/unicode_casefold.h | 2 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/unicode_groups.cc | 5879 +- duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/unicode_groups.h | 2 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/re2/walker-inl.h | 45 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/util/logging.h | 32 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/util/mix.h | 8 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/util/mutex.h | 63 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/util/rune.cc | 10 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/util/strutil.cc | 17 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/util/strutil.h | 4 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/util/utf.h | 2 duckdb-0.10.2/duckdb/src/duckdb/third_party/re2/util/util.h | 10 duckdb-0.10.2/duckdb/src/duckdb/third_party/utf8proc/include/utf8proc_wrapper.hpp | 2 duckdb-0.10.2/duckdb/src/duckdb/third_party/utf8proc/utf8proc_wrapper.cpp | 37 duckdb-0.10.2/duckdb/src/duckdb/ub_src_common.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/ub_src_execution_physical_plan.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/ub_src_planner_expression.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/ub_src_planner_expression_binder.cpp | 2 duckdb-0.10.2/duckdb/src/duckdb/ub_src_planner_operator.cpp | 2 duckdb-0.10.2/duckdb/src/include/rfuns_extension.hpp |only duckdb-0.10.2/duckdb/src/include/sources.mk | 2 duckdb-0.10.2/duckdb/src/include/typesr.hpp | 62 duckdb-0.10.2/duckdb/src/relational.cpp | 2 duckdb-0.10.2/duckdb/src/reltoaltrep.cpp | 36 duckdb-0.10.2/duckdb/src/rfuns.cpp |only duckdb-0.10.2/duckdb/src/scan.cpp | 65 duckdb-0.10.2/duckdb/src/statement.cpp | 17 duckdb-0.10.2/duckdb/src/transform.cpp | 4 duckdb-0.10.2/duckdb/src/types.cpp | 63 duckdb-0.10.2/duckdb/src/utils.cpp | 60 duckdb-0.10.2/duckdb/tests/testthat/helper-DBItest.R | 1 duckdb-0.10.2/duckdb/tests/testthat/test-DBItest.R | 20 duckdb-0.10.2/duckdb/tests/testthat/test-backend-dbplyr__duckdb_connection.R | 49 duckdb-0.10.2/duckdb/tests/testthat/test-readonly.R | 30 duckdb-0.10.2/duckdb/tests/testthat/test-rfuns.R |only 722 files changed, 27652 insertions(+), 23895 deletions(-)
Title: Causal Inference using Bayesian Additive Regression Trees
Description: Contains a variety of methods to generate typical causal inference estimates using Bayesian Additive Regression Trees (BART) as the underlying regression model (Hill (2012) <doi:10.1198/jcgs.2010.08162>).
Author: Vincent Dorie [aut, cre] ,
Jennifer Hill [aut]
Maintainer: Vincent Dorie <vdorie@gmail.com>
Diff between bartCause versions 1.0-6 dated 2023-01-23 and 1.0-8 dated 2024-05-01
DESCRIPTION | 8 +-- MD5 | 28 +++++------ R/argParse.R | 57 +++++++++++++++++----- R/generics.R | 6 ++ R/summary.R | 52 ++++++++++++++------ R/treatmentFit.R | 10 +++- build/partial.rdb |binary inst/NEWS.Rd | 23 +++++++++ inst/common/friedmanData.R | 4 - man/plot.Rd | 28 +++++------ tests/testthat/test-01-callConstructors.R | 26 +++++----- tests/testthat/test-04-bartc.R | 65 +++++++++++++------------- tests/testthat/test-05-generics.R | 73 ++++++++++++++++++++--------- tests/testthat/test-06-regression.R | 15 ++++-- tests/testthat/test-11-stan4bart.R | 75 +++++++++++++++++++++++------- 15 files changed, 318 insertions(+), 152 deletions(-)
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is
a socket library implementing 'Scalability Protocols', a reliable,
high-performance standard for common communications patterns including
publish/subscribe, request/reply and service discovery, over in-process,
IPC, TCP, WebSocket and secure TLS transports. As its own threaded
concurrency framework, provides a toolkit for asynchronous programming and
distributed computing, with intuitive 'aio' objects which resolve
automatically upon completion of asynchronous operations, and
synchronisation primitives allowing R to wait upon events signalled by
concurrent threads.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph],
R Consortium [fnd]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between nanonext versions 0.13.5.2 dated 2024-04-06 and 1.0.0 dated 2024-05-01
nanonext-0.13.5.2/nanonext/src/nng-daa5521.tar.xz |only nanonext-1.0.0/nanonext/DESCRIPTION | 13 nanonext-1.0.0/nanonext/MD5 | 140 ++++---- nanonext-1.0.0/nanonext/NAMESPACE | 1 nanonext-1.0.0/nanonext/NEWS.md | 22 + nanonext-1.0.0/nanonext/R/aio.R | 109 +++--- nanonext-1.0.0/nanonext/R/context.R | 97 +++-- nanonext-1.0.0/nanonext/R/listdial.R | 22 - nanonext-1.0.0/nanonext/R/messenger.R | 8 nanonext-1.0.0/nanonext/R/nano.R | 4 nanonext-1.0.0/nanonext/R/nanonext-package.R | 29 + nanonext-1.0.0/nanonext/R/sendrecv.R | 74 ++-- nanonext-1.0.0/nanonext/R/socket.R | 17 - nanonext-1.0.0/nanonext/R/stream.R | 2 nanonext-1.0.0/nanonext/R/sync.R | 72 ++-- nanonext-1.0.0/nanonext/R/tls.R | 34 +- nanonext-1.0.0/nanonext/R/utils.R | 76 ++-- nanonext-1.0.0/nanonext/README.md | 33 +- nanonext-1.0.0/nanonext/build/vignette.rds |binary nanonext-1.0.0/nanonext/configure | 6 nanonext-1.0.0/nanonext/configure.ucrt | 2 nanonext-1.0.0/nanonext/inst/doc/nanonext.Rmd | 14 nanonext-1.0.0/nanonext/inst/doc/nanonext.html | 14 nanonext-1.0.0/nanonext/man/base64enc.Rd | 14 nanonext-1.0.0/nanonext/man/call_aio.Rd | 38 +- nanonext-1.0.0/nanonext/man/context.Rd | 2 nanonext-1.0.0/nanonext/man/cv.Rd | 14 nanonext-1.0.0/nanonext/man/dial.Rd | 14 nanonext-1.0.0/nanonext/man/dot-context.Rd | 6 nanonext-1.0.0/nanonext/man/dot-unresolved.Rd | 6 nanonext-1.0.0/nanonext/man/grapes-twiddle-greater-than-grapes.Rd | 27 - nanonext-1.0.0/nanonext/man/is_aio.Rd | 8 nanonext-1.0.0/nanonext/man/is_error_value.Rd | 2 nanonext-1.0.0/nanonext/man/listen.Rd | 8 nanonext-1.0.0/nanonext/man/lock.Rd | 11 nanonext-1.0.0/nanonext/man/messenger.Rd | 6 nanonext-1.0.0/nanonext/man/msleep.Rd | 2 nanonext-1.0.0/nanonext/man/nano.Rd | 7 nanonext-1.0.0/nanonext/man/nanonext-package.Rd | 22 - nanonext-1.0.0/nanonext/man/next_config.Rd | 22 - nanonext-1.0.0/nanonext/man/nng_error.Rd | 5 nanonext-1.0.0/nanonext/man/nng_version.Rd | 3 nanonext-1.0.0/nanonext/man/pipe_notify.Rd | 14 nanonext-1.0.0/nanonext/man/random.Rd | 8 nanonext-1.0.0/nanonext/man/recv.Rd | 36 +- nanonext-1.0.0/nanonext/man/recv_aio.Rd | 40 +- nanonext-1.0.0/nanonext/man/reply.Rd | 47 +- nanonext-1.0.0/nanonext/man/request.Rd | 100 +++--- nanonext-1.0.0/nanonext/man/send.Rd | 46 +- nanonext-1.0.0/nanonext/man/send_aio.Rd | 52 +-- nanonext-1.0.0/nanonext/man/set_promise_context.Rd |only nanonext-1.0.0/nanonext/man/socket.Rd | 17 - nanonext-1.0.0/nanonext/man/status_code.Rd | 5 nanonext-1.0.0/nanonext/man/stop_aio.Rd | 16 nanonext-1.0.0/nanonext/man/strcat.Rd | 4 nanonext-1.0.0/nanonext/man/stream.Rd | 2 nanonext-1.0.0/nanonext/man/tls_config.Rd | 12 nanonext-1.0.0/nanonext/man/unresolved.Rd | 11 nanonext-1.0.0/nanonext/man/write_cert.Rd | 8 nanonext-1.0.0/nanonext/man/zzz.Rd |only nanonext-1.0.0/nanonext/src/Makevars.win | 6 nanonext-1.0.0/nanonext/src/aio.c | 165 ++++------ nanonext-1.0.0/nanonext/src/core.c | 102 ++---- nanonext-1.0.0/nanonext/src/init.c | 48 +- nanonext-1.0.0/nanonext/src/mbedtls-daca7a3.tar.xz |binary nanonext-1.0.0/nanonext/src/nanonext.h | 41 +- nanonext-1.0.0/nanonext/src/nng-aac4dc3.tar.xz |only nanonext-1.0.0/nanonext/src/protocol.c | 6 nanonext-1.0.0/nanonext/src/thread.c | 25 - nanonext-1.0.0/nanonext/src/tls.c | 8 nanonext-1.0.0/nanonext/src/utils.c | 12 nanonext-1.0.0/nanonext/tests/tests.R | 12 nanonext-1.0.0/nanonext/vignettes/nanonext.Rmd | 14 73 files changed, 972 insertions(+), 891 deletions(-)
Title: Global Envelopes
Description: Implementation of global envelopes for a set of general d-dimensional vectors T
in various applications. A 100(1-alpha)% global envelope is a band bounded by two
vectors such that the probability that T falls outside this envelope in any of the d
points is equal to alpha. Global means that the probability is controlled simultaneously
for all the d elements of the vectors. The global envelopes can be used for graphical
Monte Carlo and permutation tests where the test statistic is a multivariate vector or
function (e.g. goodness-of-fit testing for point patterns and random sets, functional
analysis of variance, functional general linear model, n-sample test of correspondence
of distribution functions), for central regions of functional or multivariate data (e.g.
outlier detection, functional boxplot) and for global confidence and prediction bands
(e.g. confidence band in polynomial regression, Bayesian posterior prediction). See
Myllymäki and Mrkvička (2023) <doi:10.48550/arXiv.1911.0 [...truncated...]
Author: Mari Myllymaeki [aut, cre],
Tomas Mrkvicka [aut],
Mikko Kuronen [ctb],
Jiri Dvorak [ctb],
Pavel Grabarnik [ctb],
Ute Hahn [ctb],
Michael Rost [ctb],
Henri Seijo [ctb]
Maintainer: Mari Myllymaeki <mari.myllymaki@luke.fi>
Diff between GET versions 1.0 dated 2024-01-19 and 1.0-2 dated 2024-05-01
GET-1.0-2/GET/DESCRIPTION | 35 GET-1.0-2/GET/MD5 | 168 +-- GET-1.0-2/GET/NAMESPACE | 3 GET-1.0-2/GET/NEWS | 9 GET-1.0-2/GET/R/GDP.r | 18 GET-1.0-2/GET/R/GET-package.r | 21 GET-1.0-2/GET/R/adjusted_envelopes.r | 4 GET-1.0-2/GET/R/appl_localcor.r | 2 GET-1.0-2/GET/R/combined_envelope_tests.R | 2 GET-1.0-2/GET/R/envelopes.r | 4 GET-1.0-2/GET/R/geom_central_region.R | 6 GET-1.0-2/GET/R/glm.R | 17 GET-1.0-2/GET/R/graphfanova.r | 2 GET-1.0-2/GET/R/naturalness.r |only GET-1.0-2/GET/R/p-value.r | 4 GET-1.0-2/GET/R/rq.R |only GET-1.0-2/GET/README.md | 10 GET-1.0-2/GET/build/vignette.rds |binary GET-1.0-2/GET/data/datalist | 1 GET-1.0-2/GET/data/naturalness.RData |only GET-1.0-2/GET/inst/doc/FDRenvelopes.pdf |binary GET-1.0-2/GET/inst/doc/FDRenvelopes.tex.rsp | 4 GET-1.0-2/GET/inst/doc/GET.pdf |binary GET-1.0-2/GET/inst/doc/GET.tex.rsp | 14 GET-1.0-2/GET/inst/doc/HotSpots.pdf |binary GET-1.0-2/GET/inst/doc/QuantileRegression.pdf |only GET-1.0-2/GET/inst/doc/QuantileRegression.tex.rsp |only GET-1.0-2/GET/inst/doc/pointpatterns.pdf |binary GET-1.0-2/GET/inst/doc/pointpatterns.tex.rsp | 6 GET-1.0-2/GET/man/GDP.Rd | 18 GET-1.0-2/GET/man/GET-package.Rd | 20 GET-1.0-2/GET/man/GET.composite.Rd | 4 GET-1.0-2/GET/man/GET.distrequal.Rd | 216 ++-- GET-1.0-2/GET/man/GeomCentralRegion.Rd | 58 - GET-1.0-2/GET/man/as.curve_set.Rd | 52 - GET-1.0-2/GET/man/central_region.Rd | 2 GET-1.0-2/GET/man/combined_scaled_MAD_envelope_test.Rd | 2 GET-1.0-2/GET/man/geom_central_region.Rd | 441 +++++----- GET-1.0-2/GET/man/global_envelope_test.Rd | 2 GET-1.0-2/GET/man/global_rq.Rd |only GET-1.0-2/GET/man/graph.fanova.Rd | 2 GET-1.0-2/GET/man/graph.flm.Rd | 17 GET-1.0-2/GET/man/naturalness.Rd |only GET-1.0-2/GET/vignettes/FDRenvelopes.Rnw.orig | 4 GET-1.0-2/GET/vignettes/FDRenvelopes.tex.rsp | 4 GET-1.0-2/GET/vignettes/GET-NOx_data.pdf |binary GET-1.0-2/GET/vignettes/GET-abide_9002_23_subj1and27.pdf |binary GET-1.0-2/GET/vignettes/GET-example_pop_data.pdf |binary GET-1.0-2/GET/vignettes/GET-example_pop_flm.pdf |binary GET-1.0-2/GET/vignettes/GET-flm_frank_abide.pdf |binary GET-1.0-2/GET/vignettes/GET-flm_graph_abide.pdf |binary GET-1.0-2/GET/vignettes/GET-girls_curves_fig.pdf |binary GET-1.0-2/GET/vignettes/GET-girls_fboxplot_plot.pdf |binary GET-1.0-2/GET/vignettes/GET-graphfanova_NOx_var_plot.pdf |binary GET-1.0-2/GET/vignettes/GET-graphfanova_logNOx_plot.pdf |binary GET-1.0-2/GET/vignettes/GET-necdfs.pdf |binary GET-1.0-2/GET/vignettes/GET-necdfs_means_GET.pdf |binary GET-1.0-2/GET/vignettes/GET-normalitytest.pdf |binary GET-1.0-2/GET/vignettes/GET-polynomial.pdf |binary GET-1.0-2/GET/vignettes/GET-trees.pdf |binary GET-1.0-2/GET/vignettes/GET-trees_CSR_plot.pdf |binary GET-1.0-2/GET/vignettes/GET.Rnw.orig | 16 GET-1.0-2/GET/vignettes/GET.tex.rsp | 14 GET-1.0-2/GET/vignettes/GETbibfile.bib | 52 - GET-1.0-2/GET/vignettes/QuantileRegression-workflow_res.pdf |only GET-1.0-2/GET/vignettes/QuantileRegression-workflow_rq.pdf |only GET-1.0-2/GET/vignettes/QuantileRegression-workflow_test2.pdf |only GET-1.0-2/GET/vignettes/QuantileRegression.Rnw.orig |only GET-1.0-2/GET/vignettes/QuantileRegression.tex.rsp |only GET-1.0-2/GET/vignettes/pointpatterns-HC_goodness-of-fit_test.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-combined_test.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-saplings.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-saplings_adjusted_test.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-saplings_csr_L3.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-saplings_matclust4.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-saplings_matclust_J_plot.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-saplings_matclust_L_plot.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-spatialF_bei_F.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-spatialF_bei_S.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-spatialF_forestfires_F.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-spatialF_forestfires_S.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-spruces.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-spruces_csr.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-spruces_csr_crop.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-spruces_mpp.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-spruces_randomlabeling_test.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns-workflow_res.pdf |binary GET-1.0-2/GET/vignettes/pointpatterns.Rnw.orig | 6 GET-1.0-2/GET/vignettes/pointpatterns.tex.rsp | 6 GET-1.0/GET/vignettes/GET-adulttrees.pdf |only GET-1.0/GET/vignettes/GET-adulttrees_CSR_plot.pdf |only GET-1.0/GET/vignettes/GET-example_pop_plot.pdf |only GET-1.0/GET/vignettes/GET-graphfanova_logNOx.pdf |only 93 files changed, 685 insertions(+), 581 deletions(-)
Title: Reconstruction of Daily Data - Precipitation
Description: Applies quality control to daily precipitation observations;
reconstructs the original series by estimating precipitation in missing values; and
creates gridded datasets of daily precipitation.
Author: Roberto Serrano-Notivoli [aut, cre]
,
Abel Centella-Artola [ctb]
Maintainer: Roberto Serrano-Notivoli <roberto.serrano@unizar.es>
Diff between reddPrec versions 2.0.1 dated 2024-01-19 and 2.0.3 dated 2024-05-01
DESCRIPTION | 17 ++++++++++------- MD5 | 18 +++++++++--------- R/fillData.R | 2 ++ R/gapFilling.R | 4 ++-- R/predpoint.R | 5 ++++- R/qcFirst.R | 31 +++++++++++++++++++------------ R/qcLast.R | 29 ++++++++++++++++++----------- R/qcPrec.R | 31 ++++++++++++++++++++----------- man/gapFilling.Rd | 4 ++-- man/qcPrec.Rd | 4 ++-- 10 files changed, 88 insertions(+), 57 deletions(-)
Title: Query 'SWI'-'Prolog' from R
Description: This R package connects to SWI-Prolog, <https://www.swi-prolog.org/>, so that R can send deterministic and non-deterministic queries to prolog (consult, query/submit, once, findall).
Author: Matthias Gondan [aut, com, cre] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rolog versions 0.9.16 dated 2024-03-28 and 0.9.17 dated 2024-05-01
rolog-0.9.16/rolog/inst/pl/rolog.pl |only rolog-0.9.17/rolog/DESCRIPTION | 10 +- rolog-0.9.17/rolog/MD5 | 11 +- rolog-0.9.17/rolog/NEWS.md | 5 + rolog-0.9.17/rolog/R/plbase.R | 142 +++++++++++++++++++++++++-------- rolog-0.9.17/rolog/inst/doc/rolog.html | 6 - rolog-0.9.17/rolog/src/Makevars | 17 ++- 7 files changed, 140 insertions(+), 51 deletions(-)
More information about FeatureExtraction at CRAN
Permanent link
Title: Access Formula 1 Data
Description: Obtain Formula 1 data via the 'Ergast API' <https://ergast.com/mrd/> and the unofficial API <https://www.formula1.com/en/f1-live.html> via the 'fastf1' 'Python' library <https://docs.fastf1.dev/>.
Author: Santiago Casanova [aut, cre, cph],
Philip Bulsink [aut]
Maintainer: Santiago Casanova <santiago.casanova@yahoo.com>
Diff between f1dataR versions 1.5.2 dated 2024-04-15 and 1.5.3 dated 2024-05-01
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS.md | 5 +++-- R/load_driver_telemetry.R | 2 +- R/load_race_session.R | 18 +++++++++--------- R/load_session_laps.R | 12 ++++++++---- R/plot_fastest.R | 2 +- man/get_driver_telemetry.Rd | 2 +- man/load_driver_telemetry.Rd | 2 +- man/load_race_session.Rd | 14 +++++++------- man/load_session_laps.Rd | 2 +- man/plot_fastest.Rd | 2 +- tests/testthat/test-load_race_session.R | 2 +- tests/testthat/test-load_session_laps.R | 8 ++++---- 14 files changed, 55 insertions(+), 50 deletions(-)
Title: Support Retrospective Harmonization of Data
Description: Functions to support rigorous retrospective data harmonization
processing, evaluation, and documentation across datasets from different
studies based on Maelstrom Research guidelines. The package includes the
core functions to evaluate and format the main inputs that define the
harmonization process, apply specified processing rules to generate
harmonized data, diagnose processing errors, and summarize and evaluate
harmonized outputs. The main inputs that define the processing are a
DataSchema (list and definitions of harmonized variables to be generated)
and Data Processing Elements (processing rules to be applied to generate
harmonized variables from study-specific variables). The main outputs of
processing are harmonized datasets, associated metadata, and tabular and
visual summary reports. As described in
Maelstrom Research guidelines for rigorous retrospective data
harmonization (Fortier I and al. (2017) <doi:10.1093/ije/dyw075>).
Author: Guillaume Fabre [aut, cre] ,
Maelstrom-research group [fnd, cph]
Maintainer: Guillaume Fabre <guijoseph.fabre@gmail.com>
Diff between Rmonize versions 1.0.1 dated 2023-12-21 and 1.1.0 dated 2024-05-01
Rmonize-1.0.1/Rmonize/man/Rmonize_help.Rd |only Rmonize-1.1.0/Rmonize/DESCRIPTION | 15 Rmonize-1.1.0/Rmonize/MD5 | 100 +- Rmonize-1.1.0/Rmonize/NAMESPACE | 3 Rmonize-1.1.0/Rmonize/NEWS.md | 26 Rmonize-1.1.0/Rmonize/R/00-import-from-madshapR.R | 3 Rmonize-1.1.0/Rmonize/R/01-utils.R | 6 Rmonize-1.1.0/Rmonize/R/02-harmo_process_harmonization.R | 408 ++++++++-- Rmonize-1.1.0/Rmonize/R/03-harmonized_data_evaluate.R | 2 Rmonize-1.1.0/Rmonize/R/deprecated.R |only Rmonize-1.1.0/Rmonize/README.md | 27 Rmonize-1.1.0/Rmonize/build/partial.rdb |binary Rmonize-1.1.0/Rmonize/build/vignette.rds |binary Rmonize-1.1.0/Rmonize/inst/WORDLIST | 56 - Rmonize-1.1.0/Rmonize/inst/doc/b-Data-processing-elements.Rmd | 5 Rmonize-1.1.0/Rmonize/inst/doc/b-Data-processing-elements.html | 128 +-- Rmonize-1.1.0/Rmonize/inst/doc/c-Example-with-Rmonize_DEMO.R | 2 Rmonize-1.1.0/Rmonize/inst/doc/c-Example-with-Rmonize_DEMO.Rmd | 10 Rmonize-1.1.0/Rmonize/inst/doc/c-Example-with-Rmonize_DEMO.html | 2 Rmonize-1.1.0/Rmonize/man/Rmonize-package.Rd | 56 - Rmonize-1.1.0/Rmonize/man/Rmonize_DEMO.Rd | 102 +- Rmonize-1.1.0/Rmonize/man/Rmonize_templates.Rd | 44 - Rmonize-1.1.0/Rmonize/man/Rmonize_website.Rd |only Rmonize-1.1.0/Rmonize/man/as_data_dict.Rd | 30 Rmonize-1.1.0/Rmonize/man/as_dataschema.Rd | 100 +- Rmonize-1.1.0/Rmonize/man/as_dataschema_mlstr.Rd | 94 +- Rmonize-1.1.0/Rmonize/man/as_dataset.Rd | 30 Rmonize-1.1.0/Rmonize/man/as_dossier.Rd | 30 Rmonize-1.1.0/Rmonize/man/as_harmonized_dossier.Rd | 170 ++-- Rmonize-1.1.0/Rmonize/man/bookdown_open.Rd | 30 Rmonize-1.1.0/Rmonize/man/data_dict_apply.Rd | 30 Rmonize-1.1.0/Rmonize/man/data_dict_evaluate.Rd | 30 Rmonize-1.1.0/Rmonize/man/data_dict_extract.Rd | 30 Rmonize-1.1.0/Rmonize/man/dataschema_evaluate.Rd | 116 +- Rmonize-1.1.0/Rmonize/man/dataschema_extract.Rd | 78 - Rmonize-1.1.0/Rmonize/man/dataset_evaluate.Rd | 30 Rmonize-1.1.0/Rmonize/man/dataset_summarize.Rd | 30 Rmonize-1.1.0/Rmonize/man/dataset_visualize.Rd | 30 Rmonize-1.1.0/Rmonize/man/deprecated.Rd |only Rmonize-1.1.0/Rmonize/man/dossier_create.Rd | 30 Rmonize-1.1.0/Rmonize/man/dossier_evaluate.Rd | 30 Rmonize-1.1.0/Rmonize/man/dossier_summarize.Rd | 30 Rmonize-1.1.0/Rmonize/man/harmo_process.Rd | 189 ++-- Rmonize-1.1.0/Rmonize/man/harmonized_dossier_evaluate.Rd | 148 +-- Rmonize-1.1.0/Rmonize/man/is_data_proc_elem.Rd | 82 +- Rmonize-1.1.0/Rmonize/man/is_dataschema.Rd | 88 +- Rmonize-1.1.0/Rmonize/man/is_dataschema_mlstr.Rd | 98 +- Rmonize-1.1.0/Rmonize/man/pooled_harmonized_dataset_create.Rd | 172 ++-- Rmonize-1.1.0/Rmonize/man/reexports.Rd | 61 - Rmonize-1.1.0/Rmonize/man/show_harmo_error.Rd | 79 + Rmonize-1.1.0/Rmonize/vignettes/b-Data-processing-elements.Rmd | 5 Rmonize-1.1.0/Rmonize/vignettes/c-Example-with-Rmonize_DEMO.Rmd | 10 Rmonize-1.1.0/Rmonize/vignettes/datatables.R | 2 53 files changed, 1617 insertions(+), 1260 deletions(-)
Title: Work with Hyperspectral Data, i.e. Spectra + Meta Information
(Spatial, Time, Concentration, ...)
Description: Comfortable ways to work with hyperspectral data sets.
I.e. spatially or time-resolved spectra, or spectra with any other kind
of information associated with each of the spectra. The spectra can be data
as obtained in XRF, UV/VIS, Fluorescence, AES, NIR, IR, Raman, NMR, MS,
etc. More generally, any data that is recorded over a discretized variable,
e.g. absorbance = f(wavelength), stored as a vector of absorbance values
for discrete wavelengths is suitable.
Author: Claudia Beleites [aut, cre, dtc]
,
Valter Sergo [aut],
Alois Bonifacio [ctb, dtc],
Marcel Dahms [ctb],
Bjoern Egert [ctb],
Simon Fuller [ctb],
Vilmantas Gegzna [aut],
Rustam Guliev [ctb],
Bryan A. Hanson [ctb],
Michael Hermes [ctb],
Martin Kammer [dtc [...truncated...]
Maintainer: Claudia Beleites <Claudia.Beleites@chemometrix.gmbh>
Diff between hyperSpec versions 0.100.0 dated 2021-09-13 and 0.100.2 dated 2024-05-01
hyperSpec-0.100.0/hyperSpec/inst/doc/baseline.R |only hyperSpec-0.100.0/hyperSpec/inst/doc/baseline.Rnw |only hyperSpec-0.100.0/hyperSpec/inst/doc/baseline.pdf |only hyperSpec-0.100.0/hyperSpec/inst/doc/chondro.pdf |only hyperSpec-0.100.0/hyperSpec/inst/doc/chondro.pdf.asis |only hyperSpec-0.100.0/hyperSpec/inst/doc/fileio.pdf |only hyperSpec-0.100.0/hyperSpec/inst/doc/fileio.pdf.asis |only hyperSpec-0.100.0/hyperSpec/inst/doc/flu.R |only hyperSpec-0.100.0/hyperSpec/inst/doc/flu.Rnw |only hyperSpec-0.100.0/hyperSpec/inst/doc/flu.pdf |only hyperSpec-0.100.0/hyperSpec/inst/doc/hyperspec.R |only hyperSpec-0.100.0/hyperSpec/inst/doc/hyperspec.Rnw |only hyperSpec-0.100.0/hyperSpec/inst/doc/hyperspec.pdf |only hyperSpec-0.100.0/hyperSpec/inst/doc/laser.R |only hyperSpec-0.100.0/hyperSpec/inst/doc/laser.Rnw |only hyperSpec-0.100.0/hyperSpec/inst/doc/laser.pdf |only hyperSpec-0.100.0/hyperSpec/inst/doc/plotting.R |only hyperSpec-0.100.0/hyperSpec/inst/doc/plotting.Rnw |only hyperSpec-0.100.0/hyperSpec/inst/doc/plotting.pdf |only hyperSpec-0.100.0/hyperSpec/inst/doc/rawdata |only hyperSpec-0.100.0/hyperSpec/inst/doc/vignettes.defs |only hyperSpec-0.100.0/hyperSpec/vignettes/.install_extras |only hyperSpec-0.100.0/hyperSpec/vignettes/baseline.Rnw |only hyperSpec-0.100.0/hyperSpec/vignettes/chondro.pdf.asis |only hyperSpec-0.100.0/hyperSpec/vignettes/fileio.pdf.asis |only hyperSpec-0.100.0/hyperSpec/vignettes/flu.Rnw |only hyperSpec-0.100.0/hyperSpec/vignettes/functions.RData |only hyperSpec-0.100.0/hyperSpec/vignettes/hyperspec.Rnw |only hyperSpec-0.100.0/hyperSpec/vignettes/hyperspec.bib |only hyperSpec-0.100.0/hyperSpec/vignettes/laser.Rnw |only hyperSpec-0.100.0/hyperSpec/vignettes/plotting.Rnw |only hyperSpec-0.100.0/hyperSpec/vignettes/rawdata |only hyperSpec-0.100.0/hyperSpec/vignettes/read.txt.PerkinElmer.R |only hyperSpec-0.100.0/hyperSpec/vignettes/resources |only hyperSpec-0.100.0/hyperSpec/vignettes/strukturhyperspec.pdf |only hyperSpec-0.100.0/hyperSpec/vignettes/vignettes.defs |only hyperSpec-0.100.2/hyperSpec/DESCRIPTION | 22 +- hyperSpec-0.100.2/hyperSpec/MD5 | 95 ++--------- hyperSpec-0.100.2/hyperSpec/NAMESPACE | 1 hyperSpec-0.100.2/hyperSpec/NEWS.md | 2 hyperSpec-0.100.2/hyperSpec/R/deprecated.R | 2 hyperSpec-0.100.2/hyperSpec/R/extract.R | 2 hyperSpec-0.100.2/hyperSpec/R/matlab.palette.R | 14 - hyperSpec-0.100.2/hyperSpec/R/plotmap.R | 44 ++--- hyperSpec-0.100.2/hyperSpec/R/plotmat.R | 6 hyperSpec-0.100.2/hyperSpec/R/plotvoronoi.R | 18 +- hyperSpec-0.100.2/hyperSpec/R/qplot.R | 25 +- hyperSpec-0.100.2/hyperSpec/R/read.txt.Witec.R | 7 hyperSpec-0.100.2/hyperSpec/R/wc.R | 66 ------- hyperSpec-0.100.2/hyperSpec/build/vignette.rds |binary hyperSpec-0.100.2/hyperSpec/inst/CITATION | 9 - hyperSpec-0.100.2/hyperSpec/inst/doc/hyperSpec.Rmd |only hyperSpec-0.100.2/hyperSpec/inst/doc/hyperSpec.html |only hyperSpec-0.100.2/hyperSpec/man/extractreplace.Rd | 4 hyperSpec-0.100.2/hyperSpec/man/levelplot.Rd | 6 hyperSpec-0.100.2/hyperSpec/man/palettes.Rd | 2 hyperSpec-0.100.2/hyperSpec/man/read.txt.Witec.Rd | 8 hyperSpec-0.100.2/hyperSpec/man/textio.Rd | 4 hyperSpec-0.100.2/hyperSpec/man/wc.Rd | 17 - hyperSpec-0.100.2/hyperSpec/vignettes/hyperSpec.Rmd |only 60 files changed, 119 insertions(+), 235 deletions(-)
Title: Download Data from the Bank for International Settlements (BIS)
Description: Functions for downloading data from the Bank for
International Settlements (BIS; <https://www.bis.org/>) in
Basel. Supported are only full datasets in (typically) CSV
format. The package is lightweight and without dependencies;
suggested packages are used only if data is to be transformed
into particular data structures, for instance into 'zoo'
objects. Downloaded data can optionally be cached, to avoid
repeated downloads of the same files.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between BISdata versions 0.2-2 dated 2023-09-11 and 0.2-3 dated 2024-05-01
ChangeLog |only DESCRIPTION | 24 ++++++++++++------------ MD5 | 11 ++++++----- NEWS | 14 ++++++++++++++ R/functions.R | 37 +++++++++++++------------------------ README.md | 20 +++++++++----------- man/BISdata.Rd | 10 +++------- 7 files changed, 57 insertions(+), 59 deletions(-)
Title: Support Compatibility Between 'Maelstrom' R Packages and 'Opal'
Environment
Description: Functions to support compatibility between 'Maelstrom' R packages
and 'Opal' environment. 'Opal' is the 'OBiBa' core database application for
biobanks. It is used to build data repositories that integrates data
collected from multiple sources. 'Opal Maelstrom' is a specific
implementation of this software. This 'Opal' client is specifically
designed to interact with 'Opal Maelstrom' distributions to perform
operations on the R server side. The user must have adequate credentials.
Please see <https://opaldoc.obiba.org/> for complete documentation.
Author: Guillaume Fabre [aut, cre] ,
Maelstrom-research group [fnd, cph],
OBiBa group [ctb]
Maintainer: Guillaume Fabre <guijoseph.fabre@gmail.com>
Diff between mlstrOpalr versions 1.0.2 dated 2023-10-11 and 1.0.3 dated 2024-05-01
DESCRIPTION | 21 +++++++++----------- MD5 | 24 +++++++++++----------- NEWS.md | 8 +++++++ R/09-opal_functions.R | 43 +++++++++++++++++++++++++---------------- build/vignette.rds |binary data/valueType_list.rda |binary inst/WORDLIST | 1 man/data_dict_opalr_fix.Rd | 6 +++-- man/mlstrOpalr-package.Rd | 4 +-- man/opal_tables_pull.Rd | 5 ++-- man/opal_tables_push.Rd | 18 ++++++++--------- man/taxonomy_opal_get.Rd | 4 ++- man/taxonomy_opal_mlstr_get.Rd | 4 ++- 13 files changed, 82 insertions(+), 56 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018)
<DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] ,
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 2.19.0 dated 2024-03-22 and 2.20.0 dated 2024-05-01
DESCRIPTION | 8 - MD5 | 25 ++--- NAMESPACE | 1 NEWS.md | 4 R/fmrs.R | 3 R/mol_parameters.R | 27 ++++++ R/mrs_data_display.R | 49 ++++++---- R/mrs_data_proc.R | 31 ++++++ inst/doc/spant-intro.html | 134 +++++++++++++++--------------- inst/doc/spant-metabolite-simulation.html | 2 inst/doc/spant-preprocessing.html | 4 man/dyn_acq_times.Rd |only man/image.mrs_data.Rd | 7 - man/stackplot.mrs_data.Rd | 6 + 14 files changed, 190 insertions(+), 111 deletions(-)
Title: GSL Multi-Start Nonlinear Least-Squares Fitting
Description: An R interface to nonlinear least-squares optimization with the GNU Scientific Library (GSL), see M. Galassi et al. (2009, ISBN:0954612078). The available trust region methods include the Levenberg-Marquardt algorithm with and without geodesic acceleration, the Steihaug-Toint conjugate gradient algorithm for large systems and several variants of Powell's dogleg algorithm. Multi-start optimization based on quasi-random samples is implemented using a modified version of the algorithm in Hickernell and Yuan (1997, OR Transactions). Bindings are provided to tune a number of parameters affecting the low-level aspects of the trust region algorithms. The interface mimics R's nls() function and returns model objects inheriting from the same class.
Author: Joris Chau [aut, cre]
Maintainer: Joris Chau <joris.chau@openanalytics.eu>
Diff between gslnls versions 1.3.0 dated 2024-04-24 and 1.3.2 dated 2024-05-01
gslnls-1.3.0/gslnls/cleanup.win |only gslnls-1.3.0/gslnls/configure.win |only gslnls-1.3.0/gslnls/src/Makevars.win.in |only gslnls-1.3.2/gslnls/DESCRIPTION | 8 gslnls-1.3.2/gslnls/MD5 | 23 -- gslnls-1.3.2/gslnls/NAMESPACE | 2 gslnls-1.3.2/gslnls/NEWS.md | 9 gslnls-1.3.2/gslnls/R/nls.R | 3 gslnls-1.3.2/gslnls/R/nls_methods.R | 26 ++ gslnls-1.3.2/gslnls/configure | 34 +- gslnls-1.3.2/gslnls/configure.ac | 14 - gslnls-1.3.2/gslnls/inst/unit_tests/unit_tests_gslnls.R | 6 gslnls-1.3.2/gslnls/man/hatvalues.gsl_nls.Rd |only gslnls-1.3.2/gslnls/src/Makevars.win |only gslnls-1.3.2/gslnls/src/test_nls.f90 | 182 ++++------------ 15 files changed, 131 insertions(+), 176 deletions(-)
Title: 'grid' Pattern Grobs
Description: Provides 'grid' grobs that fill in a user-defined area with various patterns. Includes enhanced versions of the geometric and image-based patterns originally contained in the 'ggpattern' package as well as original 'pch', 'polygon_tiling', 'regular_polygon', 'rose', 'text', 'wave', and 'weave' patterns plus support for custom user-defined patterns.
Author: Trevor L. Davis [aut, cre] ,
Mike FC [aut] ,
ggplot2 authors [ctb]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between gridpattern versions 1.1.1 dated 2023-10-25 and 1.2.1 dated 2024-05-01
gridpattern-1.1.1/gridpattern/tests/figs/array/alphaMaskGrob.png |only gridpattern-1.1.1/gridpattern/tests/figs/array/alphaMaskGrob_transparent.png |only gridpattern-1.1.1/gridpattern/tests/figs/array/clipGrob.png |only gridpattern-1.2.1/gridpattern/DESCRIPTION | 28 gridpattern-1.2.1/gridpattern/LICENSE | 4 gridpattern-1.2.1/gridpattern/MD5 | 140 gridpattern-1.2.1/gridpattern/NAMESPACE | 9 gridpattern-1.2.1/gridpattern/NEWS.md | 63 gridpattern-1.2.1/gridpattern/R/alphaMaskGrob.R | 102 gridpattern-1.2.1/gridpattern/R/clippingPathGrob.R | 95 gridpattern-1.2.1/gridpattern/R/grid-pattern-fill.R |only gridpattern-1.2.1/gridpattern/R/grid-pattern.R | 95 gridpattern-1.2.1/gridpattern/R/gridpattern-package.R | 2 gridpattern-1.2.1/gridpattern/R/pattern-array-ambient.R | 4 gridpattern-1.2.1/gridpattern/R/pattern-array-image.R | 3 gridpattern-1.2.1/gridpattern/R/pattern-array-placeholder.R | 54 gridpattern-1.2.1/gridpattern/R/pattern-both-gradient.R | 15 gridpattern-1.2.1/gridpattern/R/pattern-both-rose.R | 38 gridpattern-1.2.1/gridpattern/R/pattern-both-text.R | 22 gridpattern-1.2.1/gridpattern/R/pattern-geometry-circle.R | 52 gridpattern-1.2.1/gridpattern/R/pattern-geometry-crosshatch.R | 26 gridpattern-1.2.1/gridpattern/R/pattern-geometry-fill.R |only gridpattern-1.2.1/gridpattern/R/pattern-geometry-none.R | 19 gridpattern-1.2.1/gridpattern/R/pattern-geometry-pch.R | 84 gridpattern-1.2.1/gridpattern/R/pattern-geometry-regular_polygon.R | 106 gridpattern-1.2.1/gridpattern/R/pattern-geometry-stripe.R | 22 gridpattern-1.2.1/gridpattern/R/pattern-geometry-tiling.R | 58 gridpattern-1.2.1/gridpattern/R/pattern-geometry-wave.R | 54 gridpattern-1.2.1/gridpattern/R/pattern-geometry-weave.R | 63 gridpattern-1.2.1/gridpattern/R/standalone-update_alpha.R |only gridpattern-1.2.1/gridpattern/R/star_scale.R | 7 gridpattern-1.2.1/gridpattern/R/utils-ggplot2.R | 10 gridpattern-1.2.1/gridpattern/R/utils-grid.R | 7 gridpattern-1.2.1/gridpattern/R/utils-magick-read.R | 8 gridpattern-1.2.1/gridpattern/R/utils-params.R | 15 gridpattern-1.2.1/gridpattern/R/utils-polygon_df.R | 6 gridpattern-1.2.1/gridpattern/R/z_update_alpha_docs.R |only gridpattern-1.2.1/gridpattern/R/zzz.R | 2 gridpattern-1.2.1/gridpattern/README.md | 109 gridpattern-1.2.1/gridpattern/build/vignette.rds |binary gridpattern-1.2.1/gridpattern/inst/doc/developing-patterns.Rmd | 2 gridpattern-1.2.1/gridpattern/inst/doc/developing-patterns.html | 416 ++ gridpattern-1.2.1/gridpattern/inst/doc/tiling.html | 1550 +++++----- gridpattern-1.2.1/gridpattern/man/alphaMaskGrob.Rd | 4 gridpattern-1.2.1/gridpattern/man/clippingPathGrob.Rd | 9 gridpattern-1.2.1/gridpattern/man/figures/README-ggplot2-1.png |only gridpattern-1.2.1/gridpattern/man/grid.pattern.Rd | 94 gridpattern-1.2.1/gridpattern/man/grid.pattern_ambient.Rd | 10 gridpattern-1.2.1/gridpattern/man/grid.pattern_circle.Rd | 50 gridpattern-1.2.1/gridpattern/man/grid.pattern_crosshatch.Rd | 39 gridpattern-1.2.1/gridpattern/man/grid.pattern_fill.Rd |only gridpattern-1.2.1/gridpattern/man/grid.pattern_gradient.Rd | 18 gridpattern-1.2.1/gridpattern/man/grid.pattern_image.Rd | 9 gridpattern-1.2.1/gridpattern/man/grid.pattern_magick.Rd | 6 gridpattern-1.2.1/gridpattern/man/grid.pattern_none.Rd |only gridpattern-1.2.1/gridpattern/man/grid.pattern_pch.Rd | 87 gridpattern-1.2.1/gridpattern/man/grid.pattern_placeholder.Rd | 8 gridpattern-1.2.1/gridpattern/man/grid.pattern_plasma.Rd | 8 gridpattern-1.2.1/gridpattern/man/grid.pattern_polygon_tiling.Rd | 73 gridpattern-1.2.1/gridpattern/man/grid.pattern_regular_polygon.Rd | 105 gridpattern-1.2.1/gridpattern/man/grid.pattern_rose.Rd | 37 gridpattern-1.2.1/gridpattern/man/grid.pattern_stripe.Rd | 43 gridpattern-1.2.1/gridpattern/man/grid.pattern_text.Rd | 19 gridpattern-1.2.1/gridpattern/man/grid.pattern_wave.Rd | 56 gridpattern-1.2.1/gridpattern/man/grid.pattern_weave.Rd | 77 gridpattern-1.2.1/gridpattern/man/gridpattern-package.Rd | 6 gridpattern-1.2.1/gridpattern/man/patternFill.Rd |only gridpattern-1.2.1/gridpattern/man/star_scale.Rd | 7 gridpattern-1.2.1/gridpattern/man/update_alpha.Rd |only gridpattern-1.2.1/gridpattern/tests/figs/array/alphaMaskGrob_feature.png |only gridpattern-1.2.1/gridpattern/tests/figs/array/alphaMaskGrob_manual.png |only gridpattern-1.2.1/gridpattern/tests/figs/array/alphaMaskGrob_ragg.png |only gridpattern-1.2.1/gridpattern/tests/figs/array/clipGrob_cairo.png |only gridpattern-1.2.1/gridpattern/tests/figs/array/clipGrob_feature.png |only gridpattern-1.2.1/gridpattern/tests/figs/array/clipGrob_manual.png |only gridpattern-1.2.1/gridpattern/tests/figs/array/clipGrob_ragg.png |only gridpattern-1.2.1/gridpattern/tests/testthat/_snaps/geometry/fill.svg |only gridpattern-1.2.1/gridpattern/tests/testthat/test_array.R | 56 gridpattern-1.2.1/gridpattern/tests/testthat/test_geometry.R | 12 gridpattern-1.2.1/gridpattern/tests/testthat/test_utils.R | 29 gridpattern-1.2.1/gridpattern/vignettes/developing-patterns.Rmd | 2 81 files changed, 2403 insertions(+), 1751 deletions(-)
Title: Connect to an OMOP Common Data Model
Description: Provides tools for working with observational health data in the
Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax.
Common data model database table references are stored in a single compound object along with metadata.
Author: Adam Black [aut, cre] ,
Artem Gorbachev [aut],
Edward Burn [aut],
Marti Catala Sabate [aut]
Maintainer: Adam Black <black@ohdsi.org>
Diff between CDMConnector versions 1.3.1 dated 2024-04-02 and 1.3.2 dated 2024-05-01
DESCRIPTION | 6 MD5 | 28 +-- NEWS.md | 8 R/dbSource.R | 5 R/generateCohortSet.R | 2 R/generateConceptCohortSet.R | 2 inst/doc/a01_getting-started.html | 78 ++++----- inst/doc/a02_cohorts.R | 2 inst/doc/a02_cohorts.Rmd | 2 inst/doc/a02_cohorts.html | 183 ++++++++++------------ inst/doc/a06_using_cdm_attributes.html | 4 tests/testthat/setup.R | 2 tests/testthat/test-db-generateConceptCohortSet.R | 8 tests/testthat/test-local_cdm.R | 1 vignettes/a02_cohorts.Rmd | 2 15 files changed, 169 insertions(+), 164 deletions(-)
Title: Bivariate Zero-Inflated Count Models Using Copulas
Description: Maximum likelihood estimation of copula-based zero-inflated
(and non-inflated) Poisson and negative binomial count models, based on the
article <doi:10.18637/jss.v109.i01>. Supports Frank and Gaussian copulas.
Allows for mixed margins (e.g., one margin Poisson, the other zero-inflated
negative binomial), and several marginal link functions. Built-in methods for
publication-quality tables using 'texreg', post-estimation diagnostics using
'DHARMa', and testing for marginal zero-modification via <doi:10.1177/0962280217749991>.
For information on copula regression for count data, see Genest and Nešlehová (2007)
<doi:10.1017/S0515036100014963> as well as Nikoloulopoulos (2013) <doi:10.1007/978-3-642-35407-6_11>.
For information on zero-inflated count regression generally, see Lambert (1992)
<https://www.jstor.org/stable/1269547?origin=crossref>. The author acknowledges
support by NSF DMS-1925119 and DMS-212324.
Author: John Niehaus [aut, cre]
Maintainer: John Niehaus <jniehaus2257@gmail.com>
Diff between bizicount versions 1.3.2 dated 2023-05-03 and 1.3.3 dated 2024-05-01
DESCRIPTION | 29 +++++++++++++++-------------- MD5 | 11 ++++++----- R/bizicount-package.R | 7 ++++--- R/bizicount.R | 6 +++++- inst/CITATION |only man/bizicount-package.Rd | 7 +++++-- man/bizicount.Rd | 2 ++ 7 files changed, 37 insertions(+), 25 deletions(-)
Title: The Colors of your University
Description: Most universities use specific color combinations to express their unique brand identity. The 'unicol' package provides the colors and color palettes of various universities for easy plotting and printing in R. We collect and provide a diverse range of color palettes for creating scientific visualizations.
Author: Hansjoerg Neth [aut, cre] ,
Constantin Basler [ctb],
Paula Bauer [ctb],
Kaethe Bodenstein [ctb],
Franziska Drechsel [ctb],
Gina-Loretta Franz [ctb],
Karolin Heiss [ctb],
Julia Koenig [ctb],
Isabelle Krist [ctb],
Larissa Schwab [ctb],
Alina Sohst [ctb [...truncated...]
Maintainer: Hansjoerg Neth <h.neth@uni.kn>
Diff between unicol versions 0.2.0 dated 2023-09-15 and 0.3.0 dated 2024-05-01
unicol-0.2.0/unicol/R/Dublin.R |only unicol-0.2.0/unicol/R/Irvine.R |only unicol-0.2.0/unicol/man/ANU_1.Rd |only unicol-0.2.0/unicol/man/ANU_2.Rd |only unicol-0.2.0/unicol/man/CMU_1_core.Rd |only unicol-0.2.0/unicol/man/CMU_2_tartan.Rd |only unicol-0.2.0/unicol/man/CMU_3_campus.Rd |only unicol-0.2.0/unicol/man/UCC_1.Rd |only unicol-0.2.0/unicol/man/UCC_2.Rd |only unicol-0.2.0/unicol/man/UCD.Rd |only unicol-0.2.0/unicol/man/UCLA_1.Rd |only unicol-0.2.0/unicol/man/UCLA_2.Rd |only unicol-0.2.0/unicol/man/UCLA_3.Rd |only unicol-0.2.0/unicol/man/UCLA_4.Rd |only unicol-0.2.0/unicol/man/UCSD_1.Rd |only unicol-0.2.0/unicol/man/UCSD_2.Rd |only unicol-0.2.0/unicol/man/UCSD_3.Rd |only unicol-0.2.0/unicol/man/columbia.Rd |only unicol-0.2.0/unicol/man/conc_1.Rd |only unicol-0.2.0/unicol/man/conc_2.Rd |only unicol-0.2.0/unicol/man/conc_3.Rd |only unicol-0.2.0/unicol/man/conc_4.Rd |only unicol-0.2.0/unicol/man/manchester_uni_accent.Rd |only unicol-0.2.0/unicol/man/stanford_2_accent.Rd |only unicol-0.2.0/unicol/man/stanford_3_web.Rd |only unicol-0.2.0/unicol/man/ubc_1.Rd |only unicol-0.2.0/unicol/man/uvic_complementary.Rd |only unicol-0.2.0/unicol/man/uvic_core.Rd |only unicol-0.3.0/unicol/DESCRIPTION | 58 unicol-0.3.0/unicol/MD5 | 651 +- unicol-0.3.0/unicol/NAMESPACE | 85 unicol-0.3.0/unicol/NEWS.md | 148 unicol-0.3.0/unicol/R/0_all_pals.R | 262 - unicol-0.3.0/unicol/R/1_empty_pal.R | 4 unicol-0.3.0/unicol/R/2_example_pal.R | 27 unicol-0.3.0/unicol/R/5_util.R |only unicol-0.3.0/unicol/R/ANU.R | 42 unicol-0.3.0/unicol/R/Aalto.R |only unicol-0.3.0/unicol/R/Aarhus.R |only unicol-0.3.0/unicol/R/Arizona.R | 25 unicol-0.3.0/unicol/R/Auckland.R | 1 unicol-0.3.0/unicol/R/Bangor.R |only unicol-0.3.0/unicol/R/Bergen.R |only unicol-0.3.0/unicol/R/Berkeley.R | 126 unicol-0.3.0/unicol/R/Birmingham.R | 16 unicol-0.3.0/unicol/R/Boston_University.R | 4 unicol-0.3.0/unicol/R/British_Columbia.R | 16 unicol-0.3.0/unicol/R/Brown.R | 61 unicol-0.3.0/unicol/R/CMU.R | 154 unicol-0.3.0/unicol/R/Caltech.R | 10 unicol-0.3.0/unicol/R/Cardiff.R | 5 unicol-0.3.0/unicol/R/Carleton.R | 8 unicol-0.3.0/unicol/R/Columbia.R | 350 + unicol-0.3.0/unicol/R/Concordia.R | 219 unicol-0.3.0/unicol/R/Copenhagen.R |only unicol-0.3.0/unicol/R/Cork.R | 53 unicol-0.3.0/unicol/R/Cornell.R | 106 unicol-0.3.0/unicol/R/Dartmouth.R | 81 unicol-0.3.0/unicol/R/Duke.R | 78 unicol-0.3.0/unicol/R/Dundee.R | 46 unicol-0.3.0/unicol/R/Edinburgh.R | 57 unicol-0.3.0/unicol/R/FU_Berlin.R | 24 unicol-0.3.0/unicol/R/Galway.R | 21 unicol-0.3.0/unicol/R/Gothenburg.R |only unicol-0.3.0/unicol/R/Groningen.R | 25 unicol-0.3.0/unicol/R/Guelph.R | 39 unicol-0.3.0/unicol/R/Harvard.R | 60 unicol-0.3.0/unicol/R/Helsinki.R |only unicol-0.3.0/unicol/R/JHU.R | 66 unicol-0.3.0/unicol/R/Kassel.R | 35 unicol-0.3.0/unicol/R/Laval.R | 32 unicol-0.3.0/unicol/R/Limerick.R | 35 unicol-0.3.0/unicol/R/Lund.R |only unicol-0.3.0/unicol/R/MIT.R | 18 unicol-0.3.0/unicol/R/Macquarie.R | 8 unicol-0.3.0/unicol/R/Manchester_Uni.R | 71 unicol-0.3.0/unicol/R/Maynooth.R | 4 unicol-0.3.0/unicol/R/McGill.R | 159 unicol-0.3.0/unicol/R/McMaster.R | 82 unicol-0.3.0/unicol/R/NotreDame.R | 46 unicol-0.3.0/unicol/R/Oslo.R |only unicol-0.3.0/unicol/R/Otago.R | 4 unicol-0.3.0/unicol/R/Potsdam.R | 2 unicol-0.3.0/unicol/R/Princeton.R | 2 unicol-0.3.0/unicol/R/RPTU.R | 11 unicol-0.3.0/unicol/R/StAndrews.R | 51 unicol-0.3.0/unicol/R/Stanford.R | 281 - unicol-0.3.0/unicol/R/Stirling.R |only unicol-0.3.0/unicol/R/Stockholm.R |only unicol-0.3.0/unicol/R/Toronto.R | 19 unicol-0.3.0/unicol/R/Trinity_College_Dublin.R |only unicol-0.3.0/unicol/R/UCDublin.R | 20 unicol-0.3.0/unicol/R/UCIrvine.R |only unicol-0.3.0/unicol/R/UCLA.R | 111 unicol-0.3.0/unicol/R/UCSD.R | 67 unicol-0.3.0/unicol/R/UCalgary.R | 36 unicol-0.3.0/unicol/R/UChicago.R | 10 unicol-0.3.0/unicol/R/UMass.R | 57 unicol-0.3.0/unicol/R/UPenn.R | 62 unicol-0.3.0/unicol/R/UVic.R | 117 unicol-0.3.0/unicol/R/Uni_Halle-Wittenberg.R |only unicol-0.3.0/unicol/R/Uni_Hamburg.R | 10 unicol-0.3.0/unicol/R/Uni_Konstanz.R | 16 unicol-0.3.0/unicol/R/Uni_Magdeburg.R |only unicol-0.3.0/unicol/R/Uni_Manchester.R | 2 unicol-0.3.0/unicol/R/Uni_Stuttgart.R | 18 unicol-0.3.0/unicol/R/Uppsala.R |only unicol-0.3.0/unicol/R/Waikato.R | 4 unicol-0.3.0/unicol/R/Western_Uni.R | 23 unicol-0.3.0/unicol/R/Yale.R | 24 unicol-0.3.0/unicol/R/Yeshiva.R | 22 unicol-0.3.0/unicol/R/York.R | 46 unicol-0.3.0/unicol/README.md | 39 unicol-0.3.0/unicol/build/partial.rdb |binary unicol-0.3.0/unicol/build/vignette.rds |binary unicol-0.3.0/unicol/inst/CITATION | 8 unicol-0.3.0/unicol/inst/WORDLIST | 64 unicol-0.3.0/unicol/inst/doc/color_pals.R | 64 unicol-0.3.0/unicol/inst/doc/color_pals.Rmd | 116 unicol-0.3.0/unicol/inst/doc/color_pals.html | 2461 +++++----- unicol-0.3.0/unicol/inst/doc/using_pals.R | 5 unicol-0.3.0/unicol/inst/doc/using_pals.Rmd | 22 unicol-0.3.0/unicol/inst/doc/using_pals.html | 23 unicol-0.3.0/unicol/man/aalto_1.Rd |only unicol-0.3.0/unicol/man/aalto_2.Rd |only unicol-0.3.0/unicol/man/aarhus.Rd |only unicol-0.3.0/unicol/man/aberystwyth_1.Rd | 4 unicol-0.3.0/unicol/man/aberystwyth_2.Rd | 4 unicol-0.3.0/unicol/man/anu_1.Rd |only unicol-0.3.0/unicol/man/anu_2.Rd |only unicol-0.3.0/unicol/man/asu_1.Rd | 37 unicol-0.3.0/unicol/man/asu_2.Rd | 37 unicol-0.3.0/unicol/man/asu_3.Rd | 37 unicol-0.3.0/unicol/man/bangor_1.Rd |only unicol-0.3.0/unicol/man/bangor_2.Rd |only unicol-0.3.0/unicol/man/bangor_3.Rd |only unicol-0.3.0/unicol/man/bangor_4.Rd |only unicol-0.3.0/unicol/man/bergen_1.Rd |only unicol-0.3.0/unicol/man/bergen_2.Rd |only unicol-0.3.0/unicol/man/bergen_3.Rd |only unicol-0.3.0/unicol/man/bergen_4.Rd |only unicol-0.3.0/unicol/man/berkeley_1.Rd | 60 unicol-0.3.0/unicol/man/berkeley_2.Rd | 91 unicol-0.3.0/unicol/man/birmingham.Rd | 7 unicol-0.3.0/unicol/man/brown_1.Rd | 54 unicol-0.3.0/unicol/man/brown_2.Rd | 57 unicol-0.3.0/unicol/man/bu.Rd | 30 unicol-0.3.0/unicol/man/caltech_1.Rd | 32 unicol-0.3.0/unicol/man/caltech_2.Rd | 32 unicol-0.3.0/unicol/man/caltech_3.Rd | 30 unicol-0.3.0/unicol/man/cardiff_1.Rd | 7 unicol-0.3.0/unicol/man/cardiff_2.Rd | 4 unicol-0.3.0/unicol/man/carleton.Rd | 18 unicol-0.3.0/unicol/man/cmu_1.Rd |only unicol-0.3.0/unicol/man/cmu_2.Rd |only unicol-0.3.0/unicol/man/cmu_3.Rd |only unicol-0.3.0/unicol/man/columbia_1.Rd |only unicol-0.3.0/unicol/man/columbia_2.Rd |only unicol-0.3.0/unicol/man/columbia_3.Rd |only unicol-0.3.0/unicol/man/concordia_1.Rd |only unicol-0.3.0/unicol/man/concordia_2.Rd |only unicol-0.3.0/unicol/man/concordia_3.Rd |only unicol-0.3.0/unicol/man/concordia_4.Rd |only unicol-0.3.0/unicol/man/cornell_1.Rd | 49 unicol-0.3.0/unicol/man/cornell_2.Rd | 49 unicol-0.3.0/unicol/man/cornell_3_accent.Rd | 67 unicol-0.3.0/unicol/man/dartmouth_1.Rd | 42 unicol-0.3.0/unicol/man/dartmouth_2.Rd | 58 unicol-0.3.0/unicol/man/dartmouth_3.Rd | 58 unicol-0.3.0/unicol/man/duke_1.Rd | 42 unicol-0.3.0/unicol/man/duke_2.Rd | 83 unicol-0.3.0/unicol/man/dundee_background.Rd | 16 unicol-0.3.0/unicol/man/dundee_block.Rd | 11 unicol-0.3.0/unicol/man/dundee_core.Rd | 20 unicol-0.3.0/unicol/man/dundee_highlight.Rd | 13 unicol-0.3.0/unicol/man/edinburgh.Rd | 50 unicol-0.3.0/unicol/man/example.Rd | 14 unicol-0.3.0/unicol/man/figures/README-examples-unicol-1.png |binary unicol-0.3.0/unicol/man/figures/README-unicol-pals-example-1-figure-1.png |binary unicol-0.3.0/unicol/man/figures/logo.png |binary unicol-0.3.0/unicol/man/figures/logo_old.png |only unicol-0.3.0/unicol/man/figures/logo_unikn_pkg.png |binary unicol-0.3.0/unicol/man/fu_0.Rd | 12 unicol-0.3.0/unicol/man/fu_1.Rd | 12 unicol-0.3.0/unicol/man/fu_2.Rd | 12 unicol-0.3.0/unicol/man/fu_3.Rd | 12 unicol-0.3.0/unicol/man/galway_1.Rd | 17 unicol-0.3.0/unicol/man/galway_2.Rd | 14 unicol-0.3.0/unicol/man/gothenburg.Rd |only unicol-0.3.0/unicol/man/groningen_1.Rd | 10 unicol-0.3.0/unicol/man/groningen_2.Rd | 9 unicol-0.3.0/unicol/man/guelph.Rd | 41 unicol-0.3.0/unicol/man/harvard_1.Rd | 46 unicol-0.3.0/unicol/man/harvard_2.Rd | 42 unicol-0.3.0/unicol/man/harvard_3.Rd | 52 unicol-0.3.0/unicol/man/helsinki_1.Rd |only unicol-0.3.0/unicol/man/helsinki_2.Rd |only unicol-0.3.0/unicol/man/helsinki_3.Rd |only unicol-0.3.0/unicol/man/hu_1.Rd | 6 unicol-0.3.0/unicol/man/hu_1_2022.Rd | 8 unicol-0.3.0/unicol/man/hu_1_digital.Rd | 8 unicol-0.3.0/unicol/man/hu_2.Rd | 6 unicol-0.3.0/unicol/man/hu_2_2022.Rd | 6 unicol-0.3.0/unicol/man/hu_3_accent.Rd | 8 unicol-0.3.0/unicol/man/jhu_0.Rd | 32 unicol-0.3.0/unicol/man/jhu_1.Rd | 34 unicol-0.3.0/unicol/man/jhu_2.Rd | 42 unicol-0.3.0/unicol/man/jhu_3_accent.Rd | 56 unicol-0.3.0/unicol/man/jhu_4_gray.Rd | 36 unicol-0.3.0/unicol/man/ku_1.Rd |only unicol-0.3.0/unicol/man/ku_2.Rd |only unicol-0.3.0/unicol/man/laval.Rd | 36 unicol-0.3.0/unicol/man/limerick_1.Rd | 15 unicol-0.3.0/unicol/man/limerick_2.Rd | 19 unicol-0.3.0/unicol/man/lmu_1.Rd | 8 unicol-0.3.0/unicol/man/lmu_2.Rd | 8 unicol-0.3.0/unicol/man/lmu_3.Rd | 8 unicol-0.3.0/unicol/man/lund_1.Rd |only unicol-0.3.0/unicol/man/lund_2.Rd |only unicol-0.3.0/unicol/man/lund_3.Rd |only unicol-0.3.0/unicol/man/manchester_uni_1.Rd | 48 unicol-0.3.0/unicol/man/manchester_uni_2.Rd |only unicol-0.3.0/unicol/man/manitoba_1.Rd | 14 unicol-0.3.0/unicol/man/manitoba_2.Rd | 14 unicol-0.3.0/unicol/man/maynooth.Rd | 10 unicol-0.3.0/unicol/man/mcgill_brights.Rd | 45 unicol-0.3.0/unicol/man/mcgill_darks.Rd | 44 unicol-0.3.0/unicol/man/mcgill_grey.Rd | 37 unicol-0.3.0/unicol/man/mcgill_muted.Rd | 44 unicol-0.3.0/unicol/man/mcgill_pastels.Rd | 42 unicol-0.3.0/unicol/man/mcgill_red.Rd | 24 unicol-0.3.0/unicol/man/mcmaster_brighterworld.Rd | 48 unicol-0.3.0/unicol/man/mcmaster_heritage.Rd | 37 unicol-0.3.0/unicol/man/michigan_1.Rd | 30 unicol-0.3.0/unicol/man/michigan_2.Rd | 30 unicol-0.3.0/unicol/man/minnesotatwin_1.Rd | 30 unicol-0.3.0/unicol/man/minnesotatwin_2.Rd | 30 unicol-0.3.0/unicol/man/mit.Rd | 44 unicol-0.3.0/unicol/man/monash_1.Rd | 30 unicol-0.3.0/unicol/man/monash_2.Rd | 30 unicol-0.3.0/unicol/man/mq_1.Rd | 6 unicol-0.3.0/unicol/man/mq_2.Rd | 6 unicol-0.3.0/unicol/man/msu.Rd | 30 unicol-0.3.0/unicol/man/mun_1.Rd | 14 unicol-0.3.0/unicol/man/mun_2.Rd | 14 unicol-0.3.0/unicol/man/northwestern_1.Rd | 30 unicol-0.3.0/unicol/man/northwestern_2.Rd | 30 unicol-0.3.0/unicol/man/notredame_1.Rd | 38 unicol-0.3.0/unicol/man/notredame_2.Rd | 56 unicol-0.3.0/unicol/man/nyu_1.Rd | 30 unicol-0.3.0/unicol/man/nyu_2.Rd | 30 unicol-0.3.0/unicol/man/nyu_accent.Rd | 30 unicol-0.3.0/unicol/man/nyu_neutral.Rd | 30 unicol-0.3.0/unicol/man/ohio_uni_1.Rd | 30 unicol-0.3.0/unicol/man/ohio_uni_2.Rd | 30 unicol-0.3.0/unicol/man/oslo.Rd |only unicol-0.3.0/unicol/man/otago.Rd | 2 unicol-0.3.0/unicol/man/pitt_1.Rd | 30 unicol-0.3.0/unicol/man/pitt_2.Rd | 30 unicol-0.3.0/unicol/man/princeton_0.Rd | 30 unicol-0.3.0/unicol/man/princeton_1.Rd | 30 unicol-0.3.0/unicol/man/princeton_2.Rd | 30 unicol-0.3.0/unicol/man/queensu_1.Rd | 14 unicol-0.3.0/unicol/man/queensu_2.Rd | 14 unicol-0.3.0/unicol/man/rpi_1.Rd | 30 unicol-0.3.0/unicol/man/rpi_2.Rd | 30 unicol-0.3.0/unicol/man/rpi_3.Rd | 30 unicol-0.3.0/unicol/man/rptu.Rd | 10 unicol-0.3.0/unicol/man/sfu_brand.Rd | 14 unicol-0.3.0/unicol/man/standrews_1.Rd | 20 unicol-0.3.0/unicol/man/standrews_2.Rd | 29 unicol-0.3.0/unicol/man/stanford_1.Rd | 74 unicol-0.3.0/unicol/man/stanford_2.Rd |only unicol-0.3.0/unicol/man/stanford_3.Rd |only unicol-0.3.0/unicol/man/stirling_1.Rd |only unicol-0.3.0/unicol/man/stirling_2.Rd |only unicol-0.3.0/unicol/man/stirling_3.Rd |only unicol-0.3.0/unicol/man/stockholm_1.Rd |only unicol-0.3.0/unicol/man/stockholm_2.Rd |only unicol-0.3.0/unicol/man/trinity_1.Rd | 19 unicol-0.3.0/unicol/man/trinity_2.Rd | 14 unicol-0.3.0/unicol/man/ubc.Rd |only unicol-0.3.0/unicol/man/ucalgary_1.Rd | 22 unicol-0.3.0/unicol/man/ucalgary_2.Rd | 20 unicol-0.3.0/unicol/man/ucalgary_accent.Rd | 24 unicol-0.3.0/unicol/man/ucalgary_warmgreys.Rd | 20 unicol-0.3.0/unicol/man/ucc_1.Rd |only unicol-0.3.0/unicol/man/ucc_2.Rd |only unicol-0.3.0/unicol/man/ucd.Rd |only unicol-0.3.0/unicol/man/uchicago_1.Rd | 34 unicol-0.3.0/unicol/man/uchicago_2.Rd | 32 unicol-0.3.0/unicol/man/uci_1.Rd | 53 unicol-0.3.0/unicol/man/uci_2.Rd | 58 unicol-0.3.0/unicol/man/uci_3.Rd | 54 unicol-0.3.0/unicol/man/uci_4.Rd | 56 unicol-0.3.0/unicol/man/ucla_1.Rd |only unicol-0.3.0/unicol/man/ucla_2.Rd |only unicol-0.3.0/unicol/man/ucla_3.Rd |only unicol-0.3.0/unicol/man/ucla_4.Rd |only unicol-0.3.0/unicol/man/ucsd_1.Rd |only unicol-0.3.0/unicol/man/ucsd_2.Rd |only unicol-0.3.0/unicol/man/ucsd_3.Rd |only unicol-0.3.0/unicol/man/uflorida_1.Rd | 30 unicol-0.3.0/unicol/man/uflorida_2.Rd | 30 unicol-0.3.0/unicol/man/uflorida_3.Rd | 30 unicol-0.3.0/unicol/man/umass_1.Rd | 50 unicol-0.3.0/unicol/man/umass_2.Rd | 46 unicol-0.3.0/unicol/man/umass_neutrals.Rd | 40 unicol-0.3.0/unicol/man/uni_bonn_1.Rd | 8 unicol-0.3.0/unicol/man/uni_bonn_2.Rd | 8 unicol-0.3.0/unicol/man/uni_freiburg_0.Rd | 8 unicol-0.3.0/unicol/man/uni_freiburg_1.Rd | 8 unicol-0.3.0/unicol/man/uni_freiburg_2.Rd | 8 unicol-0.3.0/unicol/man/uni_freiburg_blue.Rd | 8 unicol-0.3.0/unicol/man/uni_freiburg_br.Rd | 8 unicol-0.3.0/unicol/man/uni_freiburg_grey.Rd | 8 unicol-0.3.0/unicol/man/uni_freiburg_info.Rd | 8 unicol-0.3.0/unicol/man/uni_goettingen_1.Rd | 8 unicol-0.3.0/unicol/man/uni_goettingen_2.Rd | 8 unicol-0.3.0/unicol/man/uni_goettingen_3.Rd | 8 unicol-0.3.0/unicol/man/uni_halle.Rd |only unicol-0.3.0/unicol/man/uni_hamburg_1.Rd | 10 unicol-0.3.0/unicol/man/uni_hamburg_2.Rd | 10 unicol-0.3.0/unicol/man/uni_heidelberg.Rd | 8 unicol-0.3.0/unicol/man/uni_jena_1.Rd | 8 unicol-0.3.0/unicol/man/uni_jena_2.Rd | 8 unicol-0.3.0/unicol/man/uni_kassel.Rd | 28 unicol-0.3.0/unicol/man/uni_kiel_1.Rd | 8 unicol-0.3.0/unicol/man/uni_kiel_2.Rd | 8 unicol-0.3.0/unicol/man/uni_koeln_1.Rd | 8 unicol-0.3.0/unicol/man/uni_koeln_2.Rd | 8 unicol-0.3.0/unicol/man/uni_konstanz_1.Rd | 14 unicol-0.3.0/unicol/man/uni_konstanz_2.Rd | 14 unicol-0.3.0/unicol/man/uni_magdeburg_1.Rd |only unicol-0.3.0/unicol/man/uni_magdeburg_2.Rd |only unicol-0.3.0/unicol/man/uni_magdeburg_3.Rd |only unicol-0.3.0/unicol/man/uni_manchester.Rd | 2 unicol-0.3.0/unicol/man/uni_mannheim_1.Rd | 8 unicol-0.3.0/unicol/man/uni_mannheim_2.Rd | 8 unicol-0.3.0/unicol/man/uni_potsdam.Rd | 10 unicol-0.3.0/unicol/man/uni_regensburg_1.Rd | 8 unicol-0.3.0/unicol/man/uni_regensburg_2.Rd | 8 unicol-0.3.0/unicol/man/uni_regensburg_3.Rd | 8 unicol-0.3.0/unicol/man/uni_stuttgart_1.Rd | 13 unicol-0.3.0/unicol/man/uni_stuttgart_print.Rd | 13 unicol-0.3.0/unicol/man/uni_ulm_1.Rd | 8 unicol-0.3.0/unicol/man/uni_ulm_2.Rd | 8 unicol-0.3.0/unicol/man/unicol_data.Rd | 2 unicol-0.3.0/unicol/man/uottawa.Rd | 14 unicol-0.3.0/unicol/man/upenn_1.Rd | 40 unicol-0.3.0/unicol/man/upenn_2.Rd | 64 unicol-0.3.0/unicol/man/uppsala.Rd |only unicol-0.3.0/unicol/man/utoronto.Rd | 29 unicol-0.3.0/unicol/man/uvic_1.Rd |only unicol-0.3.0/unicol/man/uvic_2.Rd |only unicol-0.3.0/unicol/man/uwaterloo_arts.Rd | 14 unicol-0.3.0/unicol/man/uwaterloo_engineering.Rd | 14 unicol-0.3.0/unicol/man/uwaterloo_environment.Rd | 14 unicol-0.3.0/unicol/man/uwaterloo_health.Rd | 14 unicol-0.3.0/unicol/man/uwaterloo_main.Rd | 14 unicol-0.3.0/unicol/man/uwaterloo_math.Rd | 14 unicol-0.3.0/unicol/man/uwaterloo_science.Rd | 14 unicol-0.3.0/unicol/man/vanderbilt_1.Rd | 30 unicol-0.3.0/unicol/man/vanderbilt_2.Rd | 30 unicol-0.3.0/unicol/man/vanderbilt_3.Rd | 30 unicol-0.3.0/unicol/man/waikato.Rd | 2 unicol-0.3.0/unicol/man/western_uni.Rd | 28 unicol-0.3.0/unicol/man/willamette.Rd | 30 unicol-0.3.0/unicol/man/wm_1.Rd | 30 unicol-0.3.0/unicol/man/wm_2.Rd | 30 unicol-0.3.0/unicol/man/wm_3.Rd | 30 unicol-0.3.0/unicol/man/wollongong_1.Rd | 4 unicol-0.3.0/unicol/man/wollongong_2.Rd | 4 unicol-0.3.0/unicol/man/yale.Rd | 42 unicol-0.3.0/unicol/man/yeshiva.Rd | 44 unicol-0.3.0/unicol/man/yorku_1.Rd | 25 unicol-0.3.0/unicol/man/yorku_2.Rd | 38 unicol-0.3.0/unicol/vignettes/color_pals.Rmd | 116 unicol-0.3.0/unicol/vignettes/using_pals.Rmd | 22 379 files changed, 7052 insertions(+), 5099 deletions(-)
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for data analysis with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre] ,
Edward L. Ionides [aut] ,
Carles Breto [aut] ,
Stephen P. Ellner [ctb] ,
Matthew J. Ferrari [ctb],
Sebastian Funk [ctb] ,
Steven G. Johnson [ctb],
Bruce E. Kendall [ctb] ,
Michael Lavine [ctb],
Dao Nguyen [ctb] ,
Eamon B. O [...truncated...]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 5.7 dated 2024-03-31 and 5.8 dated 2024-05-01
DESCRIPTION | 8 ++++---- MD5 | 46 +++++++++++++++++++++++----------------------- R/spect_match.R | 5 +++++ R/wquant.R | 4 +++- build/partial.rdb |binary data/LondonYorke.rda |binary data/bsflu.rda |binary data/ebolaWA2014.rda |binary data/ewcitmeas.rda |binary data/ewmeas.rda |binary inst/NEWS | 11 +++++++++++ inst/NEWS.Rd | 7 +++++++ inst/include/pomp.h | 4 ++-- man/bake.Rd | 2 +- man/macros/citations.Rd | 2 ++ man/spect_match.Rd | 5 +++++ man/wquant.Rd | 4 +++- src/decls.h | 2 +- src/dinit.c | 8 ++++++-- src/dprocess.c | 6 ++++-- src/pomp.h | 4 ++-- src/rinit.c | 5 +++-- src/rprior.c | 10 ++++++---- src/trajectory.c | 3 ++- 24 files changed, 90 insertions(+), 46 deletions(-)
Title: Bayesian Additive Regression Trees for Confounder Selection
Description: Fit Bayesian Regression Additive Trees (BART) models to
select true confounders from a large set of potential confounders and
to estimate average treatment effect. For more information, see Kim et
al. (2023) <doi:10.1111/biom.13833>.
Author: Yeonghoon Yoo [aut, cre]
Maintainer: Yeonghoon Yoo <yooyh.stat@gmail.com>
Diff between bartcs versions 1.2.1 dated 2024-01-24 and 1.2.2 dated 2024-05-01
bartcs-1.2.1/bartcs/vignettes/article.pdf |only bartcs-1.2.2/bartcs/DESCRIPTION | 12 ++-- bartcs-1.2.2/bartcs/MD5 | 11 +-- bartcs-1.2.2/bartcs/NEWS.md | 4 + bartcs-1.2.2/bartcs/R/bartcs-package.R | 88 +++++++++++++++--------------- bartcs-1.2.2/bartcs/inst/doc/bartcs.html | 11 ++- bartcs-1.2.2/bartcs/man/bartcs-package.Rd | 14 ++++ 7 files changed, 79 insertions(+), 61 deletions(-)
Title: Snapshots for Unit Tests using the 'tinytest' Framework
Description: Snapshots for unit tests using the 'tinytest' framework for R. Includes expectations to test base R and 'ggplot2' plots as well as console output from print().
Author: Vincent Arel-Bundock [aut, cre, cph]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between tinysnapshot versions 0.0.4 dated 2024-02-20 and 0.0.5 dated 2024-05-01
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 13 +++++++++---- R/expect_snapshot_print.R | 13 ++++++++----- build/partial.rdb |binary 5 files changed, 24 insertions(+), 16 deletions(-)
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Oliver Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.5 dated 2024-03-26 and 1.6 dated 2024-05-01
DESCRIPTION | 6 MD5 | 79 +++++---- NAMESPACE | 2 NEWS.md | 46 ++++- R/RcppExports.R | 16 +- R/class-workbook-wrappers.R | 50 +++++- R/class-workbook.R | 208 +++++++++++++++++++++++++- R/get-named-regions.R | 2 R/helper-functions.R | 36 ++++ R/pivot_table.R | 15 + R/utils.R | 122 +++++++++++---- R/wb_functions.R | 80 ++++++---- R/wb_load.R | 97 ++++++++++++ R/write.R | 92 +++++++++-- build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/conditional-formatting.html | 26 +-- inst/doc/openxlsx2_charts_manual.html | 12 - inst/doc/openxlsx2_style_manual.html | 2 man/convert_date.Rd | 3 man/dataframe_to_dims.Rd | 4 man/dims_helper.Rd | 4 man/properties-wb.Rd | 5 man/wbWorkbook.Rd | 51 ++++++ man/wb_add_data.Rd | 3 man/wb_add_formula.Rd | 3 man/wb_add_mips.Rd |only man/write_data.Rd | 3 man/write_formula.Rd | 3 src/RcppExports.cpp | 42 ++++- src/helper_functions.cpp | 165 ++++++++++++++++++-- src/xlsb_defines.h | 22 ++ tests/testthat/test-class-comment.R | 6 tests/testthat/test-class-workbook-wrappers.R | 18 ++ tests/testthat/test-class-workbook.R | 118 +++++++++++++- tests/testthat/test-loading_workbook.R | 30 +++ tests/testthat/test-read_sources.R | 7 tests/testthat/test-styles_xml.R | 2 tests/testthat/test-utils.R | 28 +++ tests/testthat/test-wb_functions.R | 108 +++++++++++++ tests/testthat/test-write.R | 27 +++ 41 files changed, 1335 insertions(+), 212 deletions(-)
Title: Explore the Innards of 'ggplot2' Objects
Description: Extensions to 'ggplot2' providing low-level debug tools: statistics
and geometries echoing their data argument. Layer manipulation: deletion,
insertion, extraction and reordering of layers. Deletion of unused variables
from the data object embedded in "ggplot" objects.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between gginnards versions 0.1.2 dated 2023-05-24 and 0.2.0 dated 2024-05-01
gginnards-0.1.2/gginnards/R/stat-debug-group.R |only gginnards-0.1.2/gginnards/R/stat-debug-panel.R |only gginnards-0.1.2/gginnards/man/geom_debug.Rd |only gginnards-0.1.2/gginnards/man/stat_debug_panel.Rd |only gginnards-0.2.0/gginnards/DESCRIPTION | 12 gginnards-0.2.0/gginnards/MD5 | 56 gginnards-0.2.0/gginnards/NAMESPACE | 7 gginnards-0.2.0/gginnards/NEWS.md | 29 gginnards-0.2.0/gginnards/R/geom-debug.R | 469 +++-- gginnards-0.2.0/gginnards/R/gginnards.R | 17 gginnards-0.2.0/gginnards/R/stat-debug.R |only gginnards-0.2.0/gginnards/README.md | 159 + gginnards-0.2.0/gginnards/build/vignette.rds |binary gginnards-0.2.0/gginnards/inst/doc/user-guide-1.R | 22 gginnards-0.2.0/gginnards/inst/doc/user-guide-1.Rmd | 34 gginnards-0.2.0/gginnards/inst/doc/user-guide-1.html | 878 ++++++---- gginnards-0.2.0/gginnards/inst/doc/user-guide-2.R | 12 gginnards-0.2.0/gginnards/inst/doc/user-guide-2.Rmd | 4 gginnards-0.2.0/gginnards/inst/doc/user-guide-2.html | 188 +- gginnards-0.2.0/gginnards/man/delete_layers.Rd | 296 +-- gginnards-0.2.0/gginnards/man/drop_vars.Rd | 226 +- gginnards-0.2.0/gginnards/man/edit_layers.Rd | 46 gginnards-0.2.0/gginnards/man/figures/README-unnamed-chunk-4-1.png |binary gginnards-0.2.0/gginnards/man/figures/README-unnamed-chunk-5-1.png |binary gginnards-0.2.0/gginnards/man/figures/README-unnamed-chunk-6-1.png |binary gginnards-0.2.0/gginnards/man/geom_debug_panel.Rd |only gginnards-0.2.0/gginnards/man/gginnards-ggproto.Rd | 7 gginnards-0.2.0/gginnards/man/gginnards-package.Rd | 17 gginnards-0.2.0/gginnards/man/stat_debug_group.Rd | 139 + gginnards-0.2.0/gginnards/man/str.Rd | 208 +- gginnards-0.2.0/gginnards/vignettes/user-guide-1.Rmd | 34 gginnards-0.2.0/gginnards/vignettes/user-guide-2.Rmd | 4 32 files changed, 1775 insertions(+), 1089 deletions(-)
Title: Obtaining a Flat Table from Pivot Tables
Description: Transformations that allow obtaining a flat table from
reports in text or Excel format that contain data in the form of pivot
tables. They can be defined for a single report and applied to a set
of reports.
Author: Jose Samos [aut, cre] ,
Universidad de Granada [cph]
Maintainer: Jose Samos <jsamos@ugr.es>
Diff between flattabler versions 2.1.1 dated 2024-01-08 and 2.1.2 dated 2024-05-01
DESCRIPTION | 8 - LICENSE | 4 MD5 | 14 +- NEWS.md | 3 inst/doc/flattabler.html | 250 +++++++++++++++++++++++------------------------ man/df_pivottabler.Rd | 4 man/df_set_v.Rd | 4 man/ft_set.Rd | 4 8 files changed, 147 insertions(+), 144 deletions(-)
Title: Communicate with 'Ollama'
Description: Wraps the 'Ollama' <https://ollama.com> API, which can be used to
communicate with generative large language models locally.
Author: Johannes B. Gruber [aut, cre] ,
Maximilian Weber [aut, ctb]
Maintainer: Johannes B. Gruber <JohannesB.Gruber@gmail.com>
Diff between rollama versions 0.0.3 dated 2024-03-21 and 0.1.0 dated 2024-05-01
DESCRIPTION | 10 - MD5 | 65 +++--- NAMESPACE | 1 NEWS.md | 5 R/chat.r | 18 + R/embedding.r | 7 R/lib.R |only R/models.r | 10 - R/rollama-package.R |only R/utils.r | 202 ++------------------ README.md | 104 ++++++++-- inst/WORDLIST | 14 + inst/doc/annotation.Rmd | 79 +++----- inst/doc/annotation.html | 89 ++++----- inst/doc/image-annotation.Rmd | 32 ++- inst/doc/image-annotation.html | 36 ++- inst/doc/text-embedding.Rmd | 370 +++++++++++++++++++------------------- inst/doc/text-embedding.html | 30 +-- man/check_model_installed.Rd |only man/create_model.Rd | 2 man/embed_text.Rd | 4 man/ping_ollama.Rd | 2 man/pull_model.Rd | 4 man/query.Rd | 15 + man/rollama-options.Rd |only man/rollama-package.Rd |only tests/testthat/test-embedding.R | 6 tests/testthat/test-models.R | 9 tests/testthat/test-utils.R | 4 vignettes/README.md | 1 vignettes/annotation.Rmd | 79 +++----- vignettes/annotation.Rmd.orig | 2 vignettes/bench |only vignettes/benchmarking.Rmd.orig |only vignettes/image-annotation.Rmd | 32 ++- vignettes/text-embedding.Rmd | 370 +++++++++++++++++++------------------- vignettes/text-embedding.Rmd.orig | 2 37 files changed, 805 insertions(+), 799 deletions(-)
Title: Hidden Hybrid Markov/Semi-Markov Model Fitting
Description: Develops algorithms for fitting, prediction, simulation
and initialization of the hidden hybrid Markov/semi-Markov model,
introduced by Guedon (2005) <doi:10.1016/j.csda.2004.05.033>,
which also includes several tools for handling missing data,
nonparametric mixture of B-splines emissions (Langrock et al., 2015
<doi:10.1111/biom.12282>), fitting regime switching regression
(Kim et al., 2008 <doi:10.1016/j.jeconom.2007.10.002>) and auto-regressive
hidden hybrid Markov/semi-Markov model, spline-based nonparametric
estimation of additive state-switching models
(Langrock et al., 2018 <doi:10.1111/stan.12133>)
and many other useful tools
(read for more description: Amini et al., 2022 <doi:10.1007/s00180-022-01248-x> and its
arxiv version: <doi:10.48550/arXiv.2109.12489>).
Author: Morteza Amini [aut, cre, cph],
Afarin Bayat [aut],
Reza Salehian [aut]
Maintainer: Morteza Amini <morteza.amini@ut.ac.ir>
Diff between hhsmm versions 0.3.6 dated 2023-08-08 and 0.3.7 dated 2024-05-01
DESCRIPTION | 14 ++++----- MD5 | 70 +++++++++++++++++++++++----------------------- R/additive-reg-mstep.R | 8 ++--- R/cov-miss-mix-wt.R | 20 ++++++------- R/cov-mix-wt.R | 20 ++++++------- R/dnorm-additive-reg.R | 6 +-- R/hhsmmfit.R | 34 +++++++++++----------- R/initial-cluster.R | 16 +++++----- R/initial-estimate.R | 10 +++--- R/initialize-model.R | 34 +++++++++++----------- R/make-model.R | 40 ++++++++++++++------------ R/nonpar_mstep.R | 4 +- R/predict-hhsmm.R | 26 ++++++++--------- R/predict-hhsmmspec.R | 18 +++++------ R/raddreg.R | 4 +- R/rmixlm.R | 4 +- R/score.R | 44 +++++++++++++++++++++++----- R/simulate-hhsmm.R | 18 +++++------ R/train-test-split.R | 10 +++--- man/additive_reg_mstep.Rd | 10 +++--- man/cov.miss.mix.wt.Rd | 20 ++++++------- man/cov.mix.wt.Rd | 20 ++++++------- man/dnorm_additive_reg.Rd | 8 ++--- man/hhsmmfit.Rd | 34 +++++++++++----------- man/initial_cluster.Rd | 16 +++++----- man/initial_estimate.Rd | 10 +++--- man/initialize_model.Rd | 34 +++++++++++----------- man/make_model.Rd | 34 +++++++++++----------- man/nonpar_mstep.Rd | 4 +- man/predict.hhsmm.Rd | 26 ++++++++--------- man/predict.hhsmmspec.Rd | 18 +++++------ man/raddreg.Rd | 4 +- man/rmixlm.Rd | 4 +- man/score.Rd | 33 +++++++++++++++++++++ man/simulate.hhsmmspec.Rd | 24 +++++++-------- man/train_test_split.Rd | 8 ++--- 36 files changed, 385 insertions(+), 322 deletions(-)
Title: Nonparametric Estimation of the Yield Curve Evolution
Description: Nonparametric estimation of discount functions and yield curves from
transaction data of coupon paying bonds.
Koo, B., La Vecchia, D., & Linton, O. B. (2021) <doi:10.1016/j.jeconom.2020.04.014>
describe an application of this package using the Center for Research in
Security Prices (CRSP) Bond Data and document its implementation.
Author: Bonsoo Koo [aut],
Nathaniel Tomasetti [ctb],
Kai-Yang Goh [ctb],
Yangzhuoran Fin Yang [aut, cre]
Maintainer: Yangzhuoran Fin Yang <yangyangzhuoran@gmail.com>
Diff between ycevo versions 0.1.2 dated 2022-06-28 and 0.2.0 dated 2024-05-01
ycevo-0.1.2/ycevo/R/data.R |only ycevo-0.1.2/ycevo/data |only ycevo-0.1.2/ycevo/man/USbonds.Rd |only ycevo-0.1.2/ycevo/man/figures/README-unnamed-chunk-2-1.png |only ycevo-0.1.2/ycevo/man/figures/README-unnamed-chunk-2-2.png |only ycevo-0.1.2/ycevo/tests/testthat/test-ycevo.R |only ycevo-0.2.0/ycevo/DESCRIPTION | 32 ycevo-0.2.0/ycevo/MD5 | 57 ycevo-0.2.0/ycevo/NAMESPACE | 94 - ycevo-0.2.0/ycevo/NEWS.md | 34 ycevo-0.2.0/ycevo/R/RcppExports.R | 22 ycevo-0.2.0/ycevo/R/assertion.R |only ycevo-0.2.0/ycevo/R/augment.R |only ycevo-0.2.0/ycevo/R/autoplot.R |only ycevo-0.2.0/ycevo/R/epa.R |only ycevo-0.2.0/ycevo/R/estimation.R | 1029 +++++-------- ycevo-0.2.0/ycevo/R/preparation.R | 550 ++---- ycevo-0.2.0/ycevo/R/simulation.R |only ycevo-0.2.0/ycevo/R/util.R | 415 +++-- ycevo-0.2.0/ycevo/R/ycevo-package.R | 77 ycevo-0.2.0/ycevo/R/ycevo.R | 455 +++-- ycevo-0.2.0/ycevo/README.md | 315 ++- ycevo-0.2.0/ycevo/man/augment.ycevo.Rd |only ycevo-0.2.0/ycevo/man/autoplot.ycevo.Rd |only ycevo-0.2.0/ycevo/man/figures/README-unnamed-chunk-6-1.png |only ycevo-0.2.0/ycevo/man/generate_yield.Rd | 281 +-- ycevo-0.2.0/ycevo/man/reexports.Rd |only ycevo-0.2.0/ycevo/man/vis_kernel.Rd |only ycevo-0.2.0/ycevo/man/ycevo-package.Rd | 17 ycevo-0.2.0/ycevo/man/ycevo.Rd | 274 +-- ycevo-0.2.0/ycevo/man/ycevo_data.Rd |only ycevo-0.2.0/ycevo/src/Makevars | 13 ycevo-0.2.0/ycevo/src/Makevars.win | 13 ycevo-0.2.0/ycevo/src/RcppExports.cpp | 39 ycevo-0.2.0/ycevo/src/dbar_cpp.cpp | 322 ---- ycevo-0.2.0/ycevo/tests/testthat/test-estimation.R | 257 ++- ycevo-0.2.0/ycevo/tests/testthat/test-preparation.R | 274 +-- ycevo-0.2.0/ycevo/tests/testthat/test-util.R | 175 -- 38 files changed, 2285 insertions(+), 2460 deletions(-)
Title: Sparse Identification of Nonlinear Dynamics
Description: This implements the Brunton et al (2016; PNAS <doi:10.1073/pnas.1517384113>) sparse
identification algorithm for finding ordinary differential equations for a measured
system from raw data (SINDy). The package includes a set of additional tools for
working with raw data, with an emphasis on cognitive science applications (Dale
and Bhat, 2018 <doi:10.1016/j.cogsys.2018.06.020>). See
<https://github.com/racdale/sindyr> for examples and updates.
Author: Rick Dale and Harish S. Bhat
Maintainer: Rick Dale <racdale@gmail.com>
Diff between sindyr versions 0.2.3 dated 2020-06-09 and 0.2.4 dated 2024-05-01
DESCRIPTION | 14 ++++++++------ MD5 | 10 ++++++---- NAMESPACE | 3 ++- R/finite_difference.R | 6 +++--- R/lorenzattractor.R |only man/lorenzattractor.Rd |only man/sindyr-package.Rd | 19 +++++-------------- 7 files changed, 24 insertions(+), 28 deletions(-)
Title: Variational Bayesian Inference for Genome-Wide Regression
Description: Conducts linear regression using variational Bayesian inference, particularly optimized for genome-wide association mapping and whole-genome prediction which use a number of DNA markers as the explanatory variables. Provides seven regression models which select the important variables (i.e., the variables related to response variables) among the given explanatory variables in different ways (i.e., model structures).
Author: Akio Onogi [aut, cre, cph],
R Core Team [ctb] ,
Hiroyoshi Iwata [cph],
Takuji Nishimura [ctb] ,
Makoto Matsumoto [ctb] ,
STRUCTURE software contributors [ctb] ,
Alan Miller [ctb] ,
Peter Beerli [ctb]
Maintainer: Akio Onogi <onogiakio@gmail.com>
Diff between VIGoR versions 1.1.2 dated 2023-06-05 and 1.1.3 dated 2024-05-01
DESCRIPTION | 8 +++---- MD5 | 4 +-- src/Rdynload.h | 63 +++++++++++++++++++++------------------------------------ 3 files changed, 30 insertions(+), 45 deletions(-)
Title: 'SAS' Linear Model
Description: This is a core implementation of 'SAS' procedures for linear models - GLM, REG, ANOVA, TTEST, FREQ, and UNIVARIATE. Some R packages provide type II and type III SS. However, the results of nested and complex designs are often different from those of 'SAS.' Different results does not necessarily mean incorrectness. However, many wants the same results to SAS. This package aims to achieve that.
Reference: Littell RC, Stroup WW, Freund RJ (2002, ISBN:0-471-22174-0).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between sasLM versions 0.10.2 dated 2024-02-22 and 0.10.3 dated 2024-05-01
sasLM-0.10.2/sasLM/inst/doc/Report-Different-Simplest2402221546.pdf |only sasLM-0.10.2/sasLM/inst/doc/Report-NOT-OKs2402221547.pdf |only sasLM-0.10.2/sasLM/inst/doc/Validation-Report-GLM-2402221547.pdf |only sasLM-0.10.2/sasLM/inst/doc/sasLM-manual.pdf |only sasLM-0.10.3/sasLM/DESCRIPTION | 6 +- sasLM-0.10.3/sasLM/MD5 | 15 ++--- sasLM-0.10.3/sasLM/R/RDmn1.R | 26 ++-------- sasLM-0.10.3/sasLM/R/UNIV.R | 2 sasLM-0.10.3/sasLM/inst/NEWS.Rd | 6 ++ sasLM-0.10.3/sasLM/inst/doc/Report-Different-Simplest2403251100.pdf |only sasLM-0.10.3/sasLM/inst/doc/Report-NOT-OKs2403251100.pdf |only sasLM-0.10.3/sasLM/inst/doc/Validation-Report-GLM-2403251101.pdf |only 12 files changed, 23 insertions(+), 32 deletions(-)
Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10918-6, Nankodo, ISBN: 978-4-524-26158-1, Ohmsha, ISBN: 978-4-274-22632-8), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below. This report has been cited in more than 10,000 scientific articles.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>
Diff between RcmdrPlugin.EZR versions 1.65 dated 2024-04-02 and 1.66 dated 2024-05-01
DESCRIPTION | 8 +- MD5 | 22 +++--- NEWS | 6 + R/EZR.R | 89 +++++++++++++++++++++++++--- inst/CHANGES | 6 + inst/doc/EZR.htm | 5 - inst/doc/EZR.pdf |binary inst/etc/menus.txt | 1 inst/po/ja/LC_MESSAGES/R-RcmdrPlugin.EZR.mo |binary man/EZR.Rd | 5 - man/EZR.dialogs.Rd | 1 po/R-RcmdrPlugin.EZR.po | 11 +++ 12 files changed, 127 insertions(+), 27 deletions(-)
More information about RcmdrPlugin.EZR at CRAN
Permanent link
Title: Loadings for Principal Component Analysis and Partial Least
Squares
Description: Computing statistical hypothesis testing for loading in principal component analysis (PCA) (Yamamoto, H. et al. (2014) <doi:10.1186/1471-2105-15-51>), orthogonal smoothed PCA (OS-PCA) (Yamamoto, H. et al. (2021) <doi:10.3390/metabo11030149>), one-sided kernel PCA (Yamamoto, H. (2023) <doi:10.51094/jxiv.262>), partial least squares (PLS) and PLS discriminant analysis (PLS-DA) (Yamamoto, H. et al. (2009) <doi:10.1016/j.chemolab.2009.05.006>), PLS with rank order of groups (PLS-ROG) (Yamamoto, H. (2017) <doi:10.1002/cem.2883>), regularized canonical correlation analysis discriminant analysis (RCCA-DA) (Yamamoto, H. et al. (2008) <doi:10.1016/j.bej.2007.12.009>), multiset PLS and PLS-ROG (Yamamoto, H. (2022) <doi:10.1101/2022.08.30.505949>).
Author: Hiroyuki Yamamoto
Maintainer: Hiroyuki Yamamoto <h.yama2396@gmail.com>
Diff between loadings versions 0.4.1 dated 2023-10-08 and 0.5.1 dated 2024-05-01
DESCRIPTION | 6 +-- MD5 | 25 +++++++------- NEWS.md | 7 +++- R/multipls_loading.R | 25 ++++++++------ R/multipls_rog.R | 2 - R/unsvmultipls_loading.R | 77 +++++++++++++++++++++++++++++++++++++++++--- README.md |only data/whhl.RData |binary man/antibiotic.Rd | 7 +--- man/covid19.Rd | 9 +---- man/multipls_loading.Rd | 2 + man/multiplsrog_loading.Rd | 2 + man/unsvmultipls_loading.Rd | 16 +++++---- man/whhl.Rd | 9 ----- 14 files changed, 129 insertions(+), 58 deletions(-)