Title: A Fast Tool for Single-Cell Spatially Variable Genes
Identifications on Large-Scale Data
Description: Identifying spatially variable genes is critical in linking molecular cell functions
with tissue phenotypes. This package utilizes a granularity-based dimension-agnostic tool,
single-cell big-small patch (scBSP), implementing sparse matrix operation and KD tree
methods for distance calculation, for the identification of spatially variable genes on
large-scale data. The detailed description of this method is available at Wang, J.
and Li, J. et al. 2023 (Wang, J. and Li, J. (2023), <doi:10.1038/s41467-023-43256-5>).
Author: Jinpu Li [aut, cre] ,
Yiqing Wang [aut]
Maintainer: Jinpu Li <castle.lee.f@gmail.com>
Diff between scBSP versions 0.0.1 dated 2024-02-09 and 1.0.0 dated 2024-05-02
DESCRIPTION | 21 ++++++++++++--------- MD5 | 6 +++--- R/LoadSpatial.R | 4 ++-- inst/doc/manual.pdf |binary 4 files changed, 17 insertions(+), 14 deletions(-)
Title: Bayesian Network Structure Learning, Parameter Learning and
Inference
Description: Bayesian network structure learning, parameter learning and inference.
This package implements constraint-based (PC, GS, IAMB, Inter-IAMB, Fast-IAMB, MMPC,
Hiton-PC, HPC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing and Tabu
Search) and hybrid (MMHC, RSMAX2, H2PC) structure learning algorithms for discrete,
Gaussian and conditional Gaussian networks, along with many score functions and
conditional independence tests.
The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are also implemented.
Some utility functions (model comparison and manipulation, random data generation, arc
orientation testing, simple and advanced plots) are included, as well as support for
parameter estimation (maximum likelihood and Bayesian) and inference, conditional
probability queries, cross-validation, bootstrap and model averaging.
Development snapshots with the latest bugfixes are available from <https://www.bnlearn.com/>.
Author: Marco Scutari [aut, cre], Tomi Silander [ctb], Robert Ness [ctb]
Maintainer: Marco Scutari <scutari@bnlearn.com>
Diff between bnlearn versions 4.9.3 dated 2024-03-15 and 4.9.4 dated 2024-05-02
Changelog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- man/arc.strength.Rd | 3 +-- man/kl.Rd | 2 ++ src/fitted/fitted.c | 10 ++++++---- src/inference/rinterface/loglikelihood.c | 7 ++++--- src/parameters/rinterface/hierarchical_dirichlet.c | 6 ++---- 8 files changed, 30 insertions(+), 24 deletions(-)
Title: Visualizing Hypothesis Tests in Multivariate Linear Models
Description: Provides HE plot and other functions for visualizing hypothesis
tests in multivariate linear models. HE plots represent sums-of-squares-and-products
matrices for linear hypotheses and for error using ellipses (in two
dimensions) and ellipsoids (in three dimensions). The related 'candisc' package
provides visualizations in a reduced-rank canonical discriminant space when
there are more than a few response variables.
Author: Michael Friendly [aut, cre] ,
John Fox [aut] ,
Georges Monette [aut] ,
Phil Chalmers [ctb] ,
Duncan Murdoch [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between heplots versions 1.6.2 dated 2024-02-15 and 1.7.0 dated 2024-05-02
DESCRIPTION | 11 MD5 | 119 +- NEWS.md | 16 R/cqplot.R | 19 R/datasets.R | 205 +++ R/etasq.R | 8 R/heplot.R | 2 build/partial.rdb |binary build/vignette.rds |binary data/Overdose.RData |only inst/WORDLIST | 199 ++- inst/doc/HE_manova.R | 111 ++ inst/doc/HE_manova.Rmd | 237 ++++ inst/doc/HE_manova.html | 995 ++++++++++++------- inst/doc/HE_mmra.html | 6 inst/doc/datasets.R |only inst/doc/datasets.Rmd |only inst/doc/datasets.html |only man/AddHealth.Rd | 39 man/Adopted.Rd | 2 man/Bees.Rd | 1 man/Diabetes.Rd | 1 man/FootHead.Rd | 2 man/Headache.Rd | 2 man/Hernior.Rd | 2 man/Iwasaki_Big_Five.Rd | 31 man/MockJury.Rd | 6 man/NLSY.Rd | 1 man/NeuroCog.Rd | 3 man/Oslo.Rd | 2 man/Overdose.Rd |only man/Parenting.Rd | 1 man/Plastic.Rd | 1 man/Pottery2.Rd | 2 man/Probe.Rd | 3 man/RatWeight.Rd | 2 man/ReactTime.Rd | 1 man/Rohwer.Rd | 2 man/RootStock.Rd | 9 man/Sake.Rd | 1 man/Skulls.Rd | 2 man/SocGrades.Rd | 2 man/SocialCog.Rd | 2 man/TIPI.Rd | 2 man/VocabGrowth.Rd | 2 man/cqplot.Rd | 10 man/df.terms.Rd | 42 man/ellipse.axes.Rd | 170 +-- man/ellipse.box.Rd | 134 +- man/etasq.Rd | 8 man/figures/README-iris-can-1.png |only man/figures/README-iris3-1.png |binary man/figures/README-iris4-1.png |binary man/mathscore.Rd | 1 man/peng.Rd | 172 +-- man/schooldata.Rd | 2 vignettes/HE-examples.bib | 9 vignettes/HE_manova.Rmd | 237 ++++ vignettes/datasets.Rmd |only vignettes/fig/manova-addhealth-covellipse-1.png |only vignettes/fig/manova-addhealth-heplot-1.png |only vignettes/fig/manova-addhealth-means-each-1.png |only vignettes/fig/manova-addhealth-means-plot-1.png |only vignettes/fig/plot-jury.can1.pdf | 698 ++++++------- vignettes/fig/plot-plastic1.pdf | 1240 ++++++++++++------------ vignettes/plot-plastic1.pdf | 1240 ++++++++++++------------ 66 files changed, 3629 insertions(+), 2386 deletions(-)
Title: Bhavcopy and Live Market Data from National Stock Exchange (NSE)
& Bombay Stock Exchange (BSE) India
Description: Download Current & Historical Bhavcopy. Get Live Market data from NSE India of Equities and Derivatives (F&O) segment. Data source <https://www.nseindia.com/>.
Author: Nandan Patil [cre, aut]
Maintainer: Nandan Patil <tryanother609@gmail.com>
Diff between nser versions 1.5.1 dated 2024-02-05 and 1.5.2 dated 2024-05-02
nser-1.5.1/nser/tests |only nser-1.5.2/nser/DESCRIPTION | 8 ++-- nser-1.5.2/nser/MD5 | 60 +++++++++++++++++------------------- nser-1.5.2/nser/R/bhav.R | 4 +- nser-1.5.2/nser/R/bhavpr.R | 2 - nser-1.5.2/nser/R/bhavtoday.R | 2 - nser-1.5.2/nser/R/daytoweek.R | 1 nser-1.5.2/nser/R/fdii.R | 5 +-- nser-1.5.2/nser/R/fobhav.R | 2 - nser-1.5.2/nser/R/nseindex.R | 2 - nser-1.5.2/nser/R/nseipo.R | 2 - nser-1.5.2/nser/R/nselive.R | 42 +++++++++++++++++++------ nser-1.5.2/nser/R/nseopen.R | 4 +- nser-1.5.2/nser/R/nsetree.R | 24 +++++++++----- nser-1.5.2/nser/R/optbanknifty.R | 6 +-- nser-1.5.2/nser/R/optnifty.R | 6 +-- nser-1.5.2/nser/R/utils-pipe.R | 1 nser-1.5.2/nser/README.md | 56 +++------------------------------ nser-1.5.2/nser/build/vignette.rds |binary nser-1.5.2/nser/man/bhav.Rd | 6 +-- nser-1.5.2/nser/man/bhavpr.Rd | 2 - nser-1.5.2/nser/man/bhavtoday.Rd | 4 +- nser-1.5.2/nser/man/daytoweek.Rd | 1 nser-1.5.2/nser/man/fdii.Rd | 7 ++-- nser-1.5.2/nser/man/fobhav.Rd | 2 - nser-1.5.2/nser/man/nseindex.Rd | 2 - nser-1.5.2/nser/man/nseipo.Rd | 2 - nser-1.5.2/nser/man/nseopen.Rd | 6 +-- nser-1.5.2/nser/man/nsetree.Rd | 8 ++++ nser-1.5.2/nser/man/optbanknifty.Rd | 8 ++-- nser-1.5.2/nser/man/optnifty.Rd | 8 ++-- 31 files changed, 138 insertions(+), 145 deletions(-)
More information about symbolicQspray at CRAN
Permanent link
Title: Graphs and Tables for OMOP Results
Description: Provides methods to transform omop_result objects into
formatted tables and figures, facilitating the visualization of study
results working with the Observational Medical Outcomes Partnership
(OMOP) Common Data Model.
Author: Marti Catala [aut] ,
Nuria Mercade-Besora [aut, cre]
Maintainer: Nuria Mercade-Besora <nuria.mercadebesora@ndorms.ox.ac.uk>
Diff between visOmopResults versions 0.2.1 dated 2024-04-02 and 0.3.0 dated 2024-05-02
visOmopResults-0.2.1/visOmopResults/R/VisOmop-package.R |only visOmopResults-0.2.1/visOmopResults/R/appendSettings.R |only visOmopResults-0.2.1/visOmopResults/R/formatTable.R |only visOmopResults-0.2.1/visOmopResults/R/pivotSettings.R |only visOmopResults-0.2.1/visOmopResults/man/appendSettings.Rd |only visOmopResults-0.2.1/visOmopResults/man/optionsFormatTable.Rd |only visOmopResults-0.2.1/visOmopResults/man/pivotSettings.Rd |only visOmopResults-0.2.1/visOmopResults/tests/testthat/test-appendSettings.R |only visOmopResults-0.2.1/visOmopResults/tests/testthat/test-formatTable.R |only visOmopResults-0.2.1/visOmopResults/tests/testthat/test-keyWord.R |only visOmopResults-0.2.1/visOmopResults/tests/testthat/test-pivotSettings.R |only visOmopResults-0.3.0/visOmopResults/DESCRIPTION | 14 visOmopResults-0.3.0/visOmopResults/MD5 | 99 visOmopResults-0.3.0/visOmopResults/NAMESPACE | 7 visOmopResults-0.3.0/visOmopResults/R/addSettings.R |only visOmopResults-0.3.0/visOmopResults/R/columns.R | 28 visOmopResults-0.3.0/visOmopResults/R/filterSettings.R |only visOmopResults-0.3.0/visOmopResults/R/formatEstimateName.R | 40 visOmopResults-0.3.0/visOmopResults/R/formatHeader.R | 234 - visOmopResults-0.3.0/visOmopResults/R/fxTable.R | 92 visOmopResults-0.3.0/visOmopResults/R/gtTable.R | 60 visOmopResults-0.3.0/visOmopResults/R/mockResults.R | 401 -- visOmopResults-0.3.0/visOmopResults/R/pivotEstimates.R | 6 visOmopResults-0.3.0/visOmopResults/R/split.R | 4 visOmopResults-0.3.0/visOmopResults/R/tidy.R | 136 visOmopResults-0.3.0/visOmopResults/R/utilities.R | 14 visOmopResults-0.3.0/visOmopResults/R/visOmopResults-package.R |only visOmopResults-0.3.0/visOmopResults/R/visOmopTable.R |only visOmopResults-0.3.0/visOmopResults/README.md | 45 visOmopResults-0.3.0/visOmopResults/build/vignette.rds |binary visOmopResults-0.3.0/visOmopResults/inst/doc/formatFunctions.R | 13 visOmopResults-0.3.0/visOmopResults/inst/doc/formatFunctions.Rmd | 21 visOmopResults-0.3.0/visOmopResults/inst/doc/formatFunctions.html | 1844 ++++------ visOmopResults-0.3.0/visOmopResults/inst/doc/splitAndUnite.html | 139 visOmopResults-0.3.0/visOmopResults/inst/doc/tidy.R | 14 visOmopResults-0.3.0/visOmopResults/inst/doc/tidy.Rmd | 153 visOmopResults-0.3.0/visOmopResults/inst/doc/tidy.html | 196 - visOmopResults-0.3.0/visOmopResults/man/addSettings.Rd |only visOmopResults-0.3.0/visOmopResults/man/additionalColumns.Rd | 4 visOmopResults-0.3.0/visOmopResults/man/filterSettings.Rd |only visOmopResults-0.3.0/visOmopResults/man/formatTable.Rd | 29 visOmopResults-0.3.0/visOmopResults/man/fxTable.Rd | 20 visOmopResults-0.3.0/visOmopResults/man/groupColumns.Rd | 4 visOmopResults-0.3.0/visOmopResults/man/gtTable.Rd | 20 visOmopResults-0.3.0/visOmopResults/man/mockSummarisedResult.Rd | 5 visOmopResults-0.3.0/visOmopResults/man/optionsVisOmopTable.Rd |only visOmopResults-0.3.0/visOmopResults/man/strataColumns.Rd | 4 visOmopResults-0.3.0/visOmopResults/man/tidy.summarised_result.Rd | 3 visOmopResults-0.3.0/visOmopResults/man/visOmopResults-package.Rd | 6 visOmopResults-0.3.0/visOmopResults/man/visOmopTable.Rd |only visOmopResults-0.3.0/visOmopResults/tests/testthat/test-README.R | 4 visOmopResults-0.3.0/visOmopResults/tests/testthat/test-addSettings.R |only visOmopResults-0.3.0/visOmopResults/tests/testthat/test-formatEstimateName.R | 180 visOmopResults-0.3.0/visOmopResults/tests/testthat/test-formatEstimateValue.R | 28 visOmopResults-0.3.0/visOmopResults/tests/testthat/test-fxTable.R | 83 visOmopResults-0.3.0/visOmopResults/tests/testthat/test-gtTable.R | 72 visOmopResults-0.3.0/visOmopResults/tests/testthat/test-pivotEstimates.R | 4 visOmopResults-0.3.0/visOmopResults/tests/testthat/test-tidy.R | 56 visOmopResults-0.3.0/visOmopResults/tests/testthat/test-visOmopTable.R |only visOmopResults-0.3.0/visOmopResults/vignettes/formatFunctions.Rmd | 21 visOmopResults-0.3.0/visOmopResults/vignettes/tidy.Rmd | 153 61 files changed, 2117 insertions(+), 2139 deletions(-)
More information about visOmopResults at CRAN
Permanent link
Title: Machine Learning Benchmark Problems
Description: A collection of artificial and real-world machine learning
benchmark problems, including, e.g., several
data sets from the UCI repository.
Author: Friedrich Leisch [aut] ,
Evgenia Dimitriadou [aut],
Kurt Hornik [cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between mlbench versions 2.1-3.1 dated 2023-05-05 and 2.1-5 dated 2024-05-02
DESCRIPTION | 22 +++++++--- MD5 | 87 +++++++++++++++++++++--------------------- NEWS | 8 +++ R/mlbench-class.R | 2 R/mlbench-regression.R | 2 README | 7 +-- build |only data/BostonHousing.rda |binary data/BostonHousing2.rda |binary data/BreastCancer.rda |binary data/DNA.rda |binary data/Glass.rda |binary data/HouseVotes84.rda |binary data/Ionosphere.rda |binary data/LetterRecognition.rda |binary data/Ozone.rda |binary data/PimaIndiansDiabetes.rda |binary data/PimaIndiansDiabetes2.rda |binary data/Satellite.rda |binary data/Servo.rda |binary data/Shuttle.rda |binary data/Sonar.rda |binary data/Soybean.rda |binary data/Vehicle.rda |binary data/Vowel.rda |binary data/Zoo.rda |binary inst/CITATION | 43 ++++++++------------ man/BostonHousing.Rd | 31 ++++++-------- man/BreastCancer.Rd | 31 ++++++++------ man/DNA.Rd | 6 +- man/Glass.Rd | 30 +++++++------- man/HouseVotes84.Rd | 30 +++++++------- man/Ionosphere.Rd | 34 ++++++++-------- man/LetterRecognition.Rd | 29 +++++++------- man/Ozone.Rd | 6 +- man/PimaIndiansDiabetes.Rd | 33 +++++++-------- man/Satellite.Rd | 28 +++++++------ man/Servo.Rd | 38 +++++++++--------- man/Shuttle.Rd | 39 ++++++++++-------- man/Sonar.Rd | 46 +++++++++++----------- man/Soybean.Rd | 49 ++++++++++++----------- man/Vehicle.Rd | 48 ++++++++++++----------- man/Vowel.Rd | 38 +++++++++--------- man/Zoo.Rd | 25 +++++------- man/mlbench.waveform.Rd | 36 +++++++---------- 45 files changed, 388 insertions(+), 360 deletions(-)
Title: Smoothing Long-Memory Time Series
Description: The nonparametric trend and its derivatives in equidistant time
series (TS) with long-memory errors can be estimated. The
estimation is conducted via local polynomial regression using an
automatically selected bandwidth obtained by a built-in iterative plug-in
algorithm or a bandwidth fixed by the user.
The smoothing methods of the package are described in Letmathe, S., Beran,
J. and Feng, Y., (2021) <https://ideas.repec.org/p/pdn/ciepap/145.html>.
Author: Yuanhua Feng [aut] ,
Jan Beran [aut] ,
Sebastian Letmathe [aut] ,
Dominik Schulz [aut, cre]
Maintainer: Dominik Schulz <dominik.schulz@uni-paderborn.de>
Diff between esemifar versions 1.0.2 dated 2023-10-22 and 2.0.0 dated 2024-05-02
DESCRIPTION | 24 ++--- MD5 | 43 +++++++-- NAMESPACE | 14 +++ NEWS.md | 13 ++ R/RcppExports.R |only R/cf0.farma.R | 51 ++++++----- R/dsmoothlm.R | 10 ++ R/forecasts.R |only R/fracdiff_arfima_subfuns.R |only R/gsmooth_import_smoots.R |only R/linear_filters.R |only R/plot.esemifar.R | 68 ++++++++++----- R/plot.esemifar_fc.R |only R/print.esemifar.R | 2 R/tsmoothlm.R | 15 +++ R/unloadCpp.R |only man/arma_to_ar.Rd |only man/arma_to_ma.Rd |only man/d_to_coef.Rd |only man/esemifar.Rd | 195 ++++++++++++++++++++++++++------------------ man/farima_to_ar.Rd |only man/farima_to_ma.Rd |only man/gsmooth.Rd |only man/plot.esemifar.Rd | 10 ++ man/plot.esemifar_fc.Rd |only man/predict.esemifar.Rd |only man/tsmoothlm.Rd | 2 src |only 28 files changed, 301 insertions(+), 146 deletions(-)
Title: Create Publication Quality Tables and Plots
Description: Create publication quality plots and tables for Item Response Theory and Classical Test theory based item analysis, exploratory and confirmatory factor analysis.
Author: Mushfiqul Anwar Siraji [aut, cre]
Maintainer: Mushfiqul Anwar Siraji <siraji1993@gmail.com>
Diff between tabledown versions 0.0.3 dated 2022-09-30 and 1.0.0 dated 2024-05-02
tabledown-0.0.3/tabledown/man/figures/irt.plots.png |only tabledown-1.0.0/tabledown/DESCRIPTION | 12 - tabledown-1.0.0/tabledown/MD5 | 35 ++-- tabledown-1.0.0/tabledown/NAMESPACE | 9 + tabledown-1.0.0/tabledown/NEWS.md | 40 +++++ tabledown-1.0.0/tabledown/R/bedtime.R | 1 tabledown-1.0.0/tabledown/R/cfa.tab.R | 18 -- tabledown-1.0.0/tabledown/R/cfa.tab.multi.R | 37 ---- tabledown-1.0.0/tabledown/R/des.tab.R | 12 + tabledown-1.0.0/tabledown/R/ggreliability_plotly.R |only tabledown-1.0.0/tabledown/R/ggtestinfo_se_plotly.R |only tabledown-1.0.0/tabledown/R/global.functions.R | 2 tabledown-1.0.0/tabledown/R/gttab.R |only tabledown-1.0.0/tabledown/README.md | 140 +++++++++++------- tabledown-1.0.0/tabledown/inst/WORDLIST | 26 +++ tabledown-1.0.0/tabledown/man/cfa.tab.Rd | 20 -- tabledown-1.0.0/tabledown/man/cfa.tab.multi.Rd | 35 ---- tabledown-1.0.0/tabledown/man/des.tab.Rd | 4 tabledown-1.0.0/tabledown/man/figures/irt.png |only tabledown-1.0.0/tabledown/man/figures/irt2.png |only tabledown-1.0.0/tabledown/man/ggreliability_plotly.Rd |only tabledown-1.0.0/tabledown/man/ggtestinfo_se_ploty.Rd |only tabledown-1.0.0/tabledown/man/gt_tab.Rd |only 23 files changed, 203 insertions(+), 188 deletions(-)
More information about rsocialwatcher at CRAN
Permanent link
Title: COVID Symptom Study Sweden Open Dataset
Description: The COVID Symptom Study is a non-commercial project that uses
a free mobile app to facilitate real-time data collection of symptoms,
exposures, and risk factors related to COVID19. The package allows
easy access to summary statistics data from COVID Symptom Study
Sweden.
Author: Hugo Fitipaldi [aut, cre]
Maintainer: Hugo Fitipaldi <hugofitipaldi@gmail.com>
Diff between covidsymptom versions 0.9.3 dated 2022-01-26 and 1.0.0 dated 2024-05-02
DESCRIPTION | 31 +- MD5 | 46 ++-- NEWS.md | 5 R/covidsymptomdata.R |only R/data.R | 19 + R/get_latest_data.R | 43 ++-- R/update_csss_data.R | 121 ++++++----- README.md | 174 ++++++++++++---- build/vignette.rds |binary data/county_estimates.rda |binary data/csss_tests.rda |binary data/national_estimates.rda |binary data/postcode_estimates.rda |binary data/symptoms.rda |only inst/doc/covidsymtom_vignette.R | 2 inst/doc/covidsymtom_vignette.html | 325 ++++++++++++++++++++++++------- man/covidsymptom.Rd | 7 man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.gif |only man/figures/README-unnamed-chunk-8-1.png |only man/figures/symptoms.png |only man/get_latest_data.Rd | 10 man/symptoms.Rd |only man/update_csss_data.Rd | 17 - tests |only 27 files changed, 572 insertions(+), 228 deletions(-)
Title: Ensemble Platform for Species Distribution Modeling
Description: Functions for species distribution modeling, calibration and evaluation,
ensemble of models, ensemble forecasting and visualization. The package permits to run
consistently up to 10 single models on a presence/absences (resp presences/pseudo-absences)
dataset and to combine them in ensemble models and ensemble projections. Some bench of other
evaluation and visualisation tools are also available within the package.
Author: Wilfried Thuiller [aut],
Damien Georges [aut],
Maya Gueguen [aut, cre],
Robin Engler [aut],
Frank Breiner [aut],
Bruno Lafourcade [aut],
Remi Patin [aut],
Helene Blancheteau [aut]
Maintainer: Maya Gueguen <maya.gueguen@univ-grenoble-alpes.fr>
Diff between biomod2 versions 4.2-4 dated 2023-06-16 and 4.2-5 dated 2024-05-02
biomod2-4.2-4/biomod2/R/BIOMOD_ModelingOptions.R |only biomod2-4.2-4/biomod2/R/BIOMOD_PresenceOnly.R |only biomod2-4.2-4/biomod2/R/BIOMOD_Tuning.R |only biomod2-4.2-4/biomod2/R/bm_CVnnet.R |only biomod2-4.2-4/biomod2/man/BIOMOD_ConvertOldRun-deprecated.Rd |only biomod2-4.2-4/biomod2/man/BIOMOD_ModelingOptions.Rd |only biomod2-4.2-4/biomod2/man/BIOMOD_PresenceOnly.Rd |only biomod2-4.2-4/biomod2/man/BIOMOD_Tuning.Rd |only biomod2-4.2-4/biomod2/man/BIOMOD_cv-deprecated.Rd |only biomod2-4.2-4/biomod2/man/BIOMOD_presenceonly-deprecated.Rd |only biomod2-4.2-4/biomod2/man/CustomIndexMaker-deprecated.Rd |only biomod2-4.2-4/biomod2/man/FilteringTransformation-deprecated.Rd |only biomod2-4.2-4/biomod2/man/Print_Default_ModelingOptions-deprecated.Rd |only biomod2-4.2-4/biomod2/man/bm_CVnnet.Rd |only biomod2-4.2-4/biomod2/man/dot-check_bytes_format.Rd |only biomod2-4.2-4/biomod2/man/dot-transform.outputs.array-deprecated.Rd |only biomod2-4.2-4/biomod2/man/response.plot-deprecated.Rd |only biomod2-4.2-4/biomod2/man/update_objects-deprecated.Rd |only biomod2-4.2-5/biomod2/DESCRIPTION | 57 biomod2-4.2-5/biomod2/MD5 | 227 +- biomod2-4.2-5/biomod2/NAMESPACE | 38 biomod2-4.2-5/biomod2/R/BIOMOD_EnsembleForecasting.R | 53 biomod2-4.2-5/biomod2/R/BIOMOD_EnsembleModeling.R | 112 - biomod2-4.2-5/biomod2/R/BIOMOD_FormatingData.R | 25 biomod2-4.2-5/biomod2/R/BIOMOD_LoadModels.R | 17 biomod2-4.2-5/biomod2/R/BIOMOD_Modeling.R | 343 ++- biomod2-4.2-5/biomod2/R/BIOMOD_Projection.R | 46 biomod2-4.2-5/biomod2/R/BIOMOD_RangeSize.R | 38 biomod2-4.2-5/biomod2/R/DEPRECATED.R | 180 -- biomod2-4.2-5/biomod2/R/biomod2-package.R | 5 biomod2-4.2-5/biomod2/R/biomod2_classes_0.R |only biomod2-4.2-5/biomod2/R/biomod2_classes_1.R | 683 ------- biomod2-4.2-5/biomod2/R/biomod2_classes_2.R | 42 biomod2-4.2-5/biomod2/R/biomod2_classes_3.R | 70 biomod2-4.2-5/biomod2/R/biomod2_classes_4.R | 131 - biomod2-4.2-5/biomod2/R/biomod2_classes_5.R | 20 biomod2-4.2-5/biomod2/R/biomod2_data.R | 213 ++ biomod2-4.2-5/biomod2/R/biomod2_globalVariables.R | 18 biomod2-4.2-5/biomod2/R/biomod2_internal.R | 73 biomod2-4.2-5/biomod2/R/bm_CrossValidation.R | 110 - biomod2-4.2-5/biomod2/R/bm_FindOptimStat.R | 373 +++- biomod2-4.2-5/biomod2/R/bm_MakeFormula.R | 6 biomod2-4.2-5/biomod2/R/bm_ModelingOptions.R |only biomod2-4.2-5/biomod2/R/bm_PlotEvalBoxplot.R | 11 biomod2-4.2-5/biomod2/R/bm_PlotEvalMean.R | 18 biomod2-4.2-5/biomod2/R/bm_PlotRangeSize.R | 5 biomod2-4.2-5/biomod2/R/bm_PlotResponseCurves.R | 11 biomod2-4.2-5/biomod2/R/bm_PlotVarImpBoxplot.R | 7 biomod2-4.2-5/biomod2/R/bm_PseudoAbsences.R | 31 biomod2-4.2-5/biomod2/R/bm_RunModelsLoop.R | 878 ++-------- biomod2-4.2-5/biomod2/R/bm_SRE.R | 5 biomod2-4.2-5/biomod2/R/bm_SampleBinaryVector.R | 21 biomod2-4.2-5/biomod2/R/bm_SampleFactorLevels.R | 44 biomod2-4.2-5/biomod2/R/bm_Tuning.R |only biomod2-4.2-5/biomod2/R/bm_VariablesImportance.R | 44 biomod2-4.2-5/biomod2/R/sysdata.rda |only biomod2-4.2-5/biomod2/README.md | 70 biomod2-4.2-5/biomod2/build/vignette.rds |binary biomod2-4.2-5/biomod2/data/ModelsTable.rda |only biomod2-4.2-5/biomod2/data/OptionsBigboss.rda |only biomod2-4.2-5/biomod2/inst/doc/examples_1_mainFunctions.Rmd | 99 - biomod2-4.2-5/biomod2/inst/doc/examples_1_mainFunctions.html | 91 - biomod2-4.2-5/biomod2/inst/doc/examples_2_secundaryFunctions.Rmd | 137 + biomod2-4.2-5/biomod2/inst/doc/examples_2_secundaryFunctions.html | 131 + biomod2-4.2-5/biomod2/inst/doc/news.Rmd | 115 - biomod2-4.2-5/biomod2/inst/doc/news.html | 161 + biomod2-4.2-5/biomod2/inst/doc/vignette_crossValidation.Rmd |only biomod2-4.2-5/biomod2/inst/doc/vignette_crossValidation.html |only biomod2-4.2-5/biomod2/inst/doc/vignette_dataPreparation.Rmd |only biomod2-4.2-5/biomod2/inst/doc/vignette_dataPreparation.html |only biomod2-4.2-5/biomod2/inst/doc/vignette_modelingOptions.Rmd |only biomod2-4.2-5/biomod2/inst/doc/vignette_modelingOptions.html |only biomod2-4.2-5/biomod2/inst/doc/vignette_pseudoAbsences.Rmd | 10 biomod2-4.2-5/biomod2/inst/doc/vignette_pseudoAbsences.html | 14 biomod2-4.2-5/biomod2/inst/doc/vignette_variability.Rmd | 10 biomod2-4.2-5/biomod2/inst/doc/vignette_variability.html | 14 biomod2-4.2-5/biomod2/inst/doc/vignette_videos.Rmd | 1 biomod2-4.2-5/biomod2/inst/doc/vignette_videos.html | 6 biomod2-4.2-5/biomod2/man/BIOMOD.ensemble.models.out.Rd | 9 biomod2-4.2-5/biomod2/man/BIOMOD.formated.data.PA.Rd | 6 biomod2-4.2-5/biomod2/man/BIOMOD.formated.data.Rd | 6 biomod2-4.2-5/biomod2/man/BIOMOD.models.options.Rd | 60 biomod2-4.2-5/biomod2/man/BIOMOD.models.out.Rd | 14 biomod2-4.2-5/biomod2/man/BIOMOD.options.dataset.Rd |only biomod2-4.2-5/biomod2/man/BIOMOD.options.default.Rd |only biomod2-4.2-5/biomod2/man/BIOMOD.projection.out.Rd | 12 biomod2-4.2-5/biomod2/man/BIOMOD.stored.data.Rd | 34 biomod2-4.2-5/biomod2/man/BIOMOD_EnsembleForecasting.Rd | 30 biomod2-4.2-5/biomod2/man/BIOMOD_EnsembleModeling.Rd | 80 biomod2-4.2-5/biomod2/man/BIOMOD_FormatingData.Rd | 30 biomod2-4.2-5/biomod2/man/BIOMOD_LoadModels.Rd | 22 biomod2-4.2-5/biomod2/man/BIOMOD_Modeling.Rd | 175 + biomod2-4.2-5/biomod2/man/BIOMOD_PresenceOnly-deprecated.Rd |only biomod2-4.2-5/biomod2/man/BIOMOD_Projection.Rd | 32 biomod2-4.2-5/biomod2/man/BIOMOD_RangeSize.Rd | 42 biomod2-4.2-5/biomod2/man/BIOMOD_tuning-deprecated.Rd | 6 biomod2-4.2-5/biomod2/man/DataSpecies.Rd | 2 biomod2-4.2-5/biomod2/man/ModelsTable.Rd |only biomod2-4.2-5/biomod2/man/OptionsBigboss.Rd |only biomod2-4.2-5/biomod2/man/biomod2-deprecated.Rd | 80 biomod2-4.2-5/biomod2/man/biomod2_ensemble_model.Rd | 18 biomod2-4.2-5/biomod2/man/biomod2_model.Rd | 26 biomod2-4.2-5/biomod2/man/bm_BinaryTransformation.Rd | 3 biomod2-4.2-5/biomod2/man/bm_CrossValidation.Rd | 93 - biomod2-4.2-5/biomod2/man/bm_FindOptimStat.Rd | 100 - biomod2-4.2-5/biomod2/man/bm_MakeFormula.Rd | 5 biomod2-4.2-5/biomod2/man/bm_ModelingOptions.Rd |only biomod2-4.2-5/biomod2/man/bm_PlotEvalBoxplot.Rd | 14 biomod2-4.2-5/biomod2/man/bm_PlotEvalMean.Rd | 16 biomod2-4.2-5/biomod2/man/bm_PlotRangeSize.Rd | 8 biomod2-4.2-5/biomod2/man/bm_PlotResponseCurves.Rd | 10 biomod2-4.2-5/biomod2/man/bm_PlotVarImpBoxplot.Rd | 10 biomod2-4.2-5/biomod2/man/bm_PseudoAbsences.Rd | 30 biomod2-4.2-5/biomod2/man/bm_RunModelsLoop.Rd | 33 biomod2-4.2-5/biomod2/man/bm_SRE.Rd | 5 biomod2-4.2-5/biomod2/man/bm_SampleBinaryVector.Rd | 27 biomod2-4.2-5/biomod2/man/bm_SampleFactorLevels.Rd | 47 biomod2-4.2-5/biomod2/man/bm_Tuning.Rd |only biomod2-4.2-5/biomod2/man/bm_VariablesImportance.Rd | 22 biomod2-4.2-5/biomod2/man/dot-load_gam_namespace.Rd | 4 biomod2-4.2-5/biomod2/man/getters.out.Rd | 22 biomod2-4.2-5/biomod2/man/plot.Rd | 6 biomod2-4.2-5/biomod2/man/predict2.em.Rd | 4 biomod2-4.2-5/biomod2/vignettes/examples_1_mainFunctions.Rmd | 99 - biomod2-4.2-5/biomod2/vignettes/examples_2_secundaryFunctions.Rmd | 137 + biomod2-4.2-5/biomod2/vignettes/news.Rmd | 115 - biomod2-4.2-5/biomod2/vignettes/pictures/CVschema.PNG |only biomod2-4.2-5/biomod2/vignettes/pictures/MyBiomodData_With_CalibLines.PNG |only biomod2-4.2-5/biomod2/vignettes/pictures/SCHEMA_BIOMOD2_WORKFLOW_functions.png |binary biomod2-4.2-5/biomod2/vignettes/pictures/dataPreparation_plot1.png |only biomod2-4.2-5/biomod2/vignettes/vignette_crossValidation.Rmd |only biomod2-4.2-5/biomod2/vignettes/vignette_dataPreparation.Rmd |only biomod2-4.2-5/biomod2/vignettes/vignette_modelingOptions.Rmd |only biomod2-4.2-5/biomod2/vignettes/vignette_pseudoAbsences.Rmd | 10 biomod2-4.2-5/biomod2/vignettes/vignette_variability.Rmd | 10 biomod2-4.2-5/biomod2/vignettes/vignette_videos.Rmd | 1 136 files changed, 2981 insertions(+), 3348 deletions(-)
Title: A Centralized Metadata Object Focus on Clinical Trial Data
Programming Workflows
Description: Create an immutable container holding metadata for the purpose of better enabling programming activities and functionality of other packages within the clinical programming workflow.
Author: Christina Fillmore [aut, cre] ,
Maya Gans [aut] ,
Ashley Tarasiewicz [aut],
Mike Stackhouse [aut] ,
Tamara Senior [aut],
GSK/Atorus JPT [cph, fnd]
Maintainer: Christina Fillmore <christina.e.fillmore@gsk.com>
Diff between metacore versions 0.1.2 dated 2023-03-02 and 0.1.3 dated 2024-05-02
DESCRIPTION | 15 MD5 | 43 - NAMESPACE | 1 NEWS.md | 6 R/metacore.R | 52 + R/spec_builder.R | 39 - R/xml_builders.R | 8 build/vignette.rds |binary inst/doc/Building_Specification_Readers.R | 8 inst/doc/Building_Specification_Readers.html | 999 +++++++++++++-------------- inst/doc/Example.R | 2 inst/doc/Example.html | 128 +-- man/get_control_term.Rd | 2 man/get_keys.Rd |only man/spec_to_metacore.Rd | 4 man/spec_type_to_codelist.Rd | 4 man/spec_type_to_derivations.Rd | 4 man/spec_type_to_ds_spec.Rd | 4 man/spec_type_to_ds_vars.Rd | 4 man/spec_type_to_value_spec.Rd | 4 man/spec_type_to_var_spec.Rd | 4 tests/testthat/test-metacore.R | 15 tests/testthat/test-reader.R | 15 23 files changed, 728 insertions(+), 633 deletions(-)
Title: Landscape Metrics for Categorical Map Patterns
Description: Calculates landscape metrics for categorical landscape patterns in
a tidy workflow. 'landscapemetrics' reimplements the most common metrics from
'FRAGSTATS' (<https://www.fragstats.org/>) and new ones from the current
literature on landscape metrics. This package supports 'terra' SpatRaster objects
as input arguments. It further provides utility functions to visualize patches,
select metrics and building blocks to develop new metrics.
Author: Maximilian H.K. Hesselbarth [aut, cre]
,
Marco Sciaini [aut] ,
Jakub Nowosad [aut] ,
Sebastian Hanss [aut] ,
Laura J. Graham [ctb] ,
Jeffrey Hollister [ctb] ,
Kimberly A. With [ctb] ,
Florian Prive [ctb] function),
Project Nayuki [ctb] ,
Matt Strima [...truncated...]
Maintainer: Maximilian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between landscapemetrics versions 2.1.1 dated 2024-01-09 and 2.1.2 dated 2024-05-02
DESCRIPTION | 8 - MD5 | 14 - NEWS.md | 4 R/lsm_p_gyrate.R | 4 R/spatialize_lsm.R | 1 build/vignette.rds |binary inst/doc/get_started.html | 360 ++++++++++++++++++++++------------------------ man/landscapemetrics.Rd | 2 8 files changed, 199 insertions(+), 194 deletions(-)
More information about landscapemetrics at CRAN
Permanent link
Title: 'KorAP' Web Service Client Package
Description: A client package that makes the 'KorAP' web service API accessible from R.
The corpus analysis platform 'KorAP' has been developed as a scientific tool to make
potentially large, stratified and multiply annotated corpora, such as the 'German Reference Corpus DeReKo'
or the 'Corpus of the Contemporary Romanian Language CoRoLa', accessible for linguists to let them verify
hypotheses and to find interesting patterns in real language use.
The 'RKorAPClient' package provides access to 'KorAP' and the corpora behind it for user-created R code,
as a programmatic alternative to the 'KorAP' web user-interface.
You can learn more about 'KorAP' and use it directly on 'DeReKo' at <https://korap.ids-mannheim.de/>.
Author: Marc Kupietz [aut, cre],
Nils Diewald [ctb],
Leibniz Institute for the German Language [cph, fnd]
Maintainer: Marc Kupietz <kupietz@ids-mannheim.de>
Diff between RKorAPClient versions 0.8.0 dated 2024-01-24 and 0.8.1 dated 2024-05-02
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 7 +++++++ R/KorAPQuery.R | 2 +- R/collocationAnalysis.R | 2 +- R/misc.R | 2 +- 6 files changed, 18 insertions(+), 11 deletions(-)
Title: Extracting and Visualizing Paleobiodiversity
Description: Contains various tools for conveniently downloading and editing taxon-specific datasets from the Paleobiology Database <https://paleobiodb.org>, extracting information on abundance, temporal distribution of subtaxa and taxonomic diversity through deep time, and visualizing these data in relation to phylogeny and stratigraphy.
Author: Darius Nau [aut, cre]
Maintainer: Darius Nau <dariusnau@gmx.at>
Diff between paleoDiv versions 0.2.0 dated 2024-03-07 and 0.3.0 dated 2024-05-02
DESCRIPTION | 6 MD5 | 60 +-- NAMESPACE | 3 NEWS.md | 30 + R/data.R | 2 R/paleoDiv.R | 493 ++++++++++++++++++++++--------- build/vignette.rds |binary data/archosauria.rda |binary inst/doc/Paleobiodiversity_analysis.R | 37 +- inst/doc/Paleobiodiversity_analysis.Rmd | 67 ++-- inst/doc/Paleobiodiversity_analysis.html | 232 ++++++++------ man/ab.gg.Rd | 6 man/abdistr_.Rd | 9 man/archosauria.Rd | 2 man/convert.sptab.Rd | 2 man/div.gg.Rd | 2 man/divdistr_.Rd | 2 man/mk.sptab.Rd | 4 man/occ.cleanup.Rd | 4 man/pdb.Rd | 13 man/pdb.diff.Rd | 6 man/pdb.union.Rd | 5 man/phylo.spindles.Rd | 11 man/redraw.phylo.Rd | 2 man/stax.sel.Rd | 8 man/tree.age.combine.Rd |only man/tree.ages.Rd | 13 man/tree.ages.spp.Rd |only man/ts.periods.Rd | 4 man/ts.stages.Rd | 4 man/viol.Rd | 4 vignettes/Paleobiodiversity_analysis.Rmd | 67 ++-- 32 files changed, 739 insertions(+), 359 deletions(-)
Title: Label Data Frames, Variables, and Values
Description: Create and use data frame labels for data frame objects (frame labels), their columns (name labels), and individual values of a column (value labels). Value labels include one-to-one and many-to-one labels for nominal and ordinal variables, as well as numerical range-based value labels for continuous variables. Convert value-labeled variables so each value is replaced by its corresponding value label. Add values-converted-to-labels columns to a value-labeled data frame while preserving parent columns. Filter and subset a value-labeled data frame using labels, while returning results in terms of values. Overlay labels in place of values in common R commands to increase interpretability. Generate tables of value frequencies, with categories expressed as raw values or as labels. Access data frames that show value-to-label mappings for easy reference.
Author: Robert Hartman [aut, cre],
The MITRE Corporation [cph]
Maintainer: Robert Hartman <rohartman@gmail.com>
Diff between labelr versions 0.1.4 dated 2024-04-01 and 0.1.5 dated 2024-05-02
DESCRIPTION | 6 MD5 | 132 ++++++------- NAMESPACE | 1 NEWS.md | 7 R/add_lab_col1.R | 7 R/add_lab_cols.R | 2 R/add_lab_dumm1.R | 6 R/add_lab_dummies.R | 8 R/add_m1_lab.R | 31 +-- R/add_name_labs.R | 5 R/add_quant1.R | 4 R/all_quant_labs.R | 2 R/all_uniquev.R | 4 R/as_numv.R | 2 R/axis_lab.R | 7 R/convert_labs.R | 2 R/factor_to_lab_int.R | 1 R/flab.R | 4 R/get_all_factors.R | 2 R/has_decv.R | 3 R/headl.R | 4 R/make_demo_data.R | 8 R/recode_vals.R | 2 R/restore_factor_info.R | 2 R/slab.R | 4 R/somel.R | 4 R/sreplace.R | 1 R/taill.R | 4 R/transfer_labs.R | 4 R/use_val_labs.R | 2 R/v.R |only R/with_val_labs.R | 4 inst/doc/labelr-introduction.R | 6 inst/doc/labelr-introduction.Rmd | 10 - inst/doc/labelr-introduction.html | 351 +++++++++++++++++------------------- inst/doc/labelr-special-topics.R | 8 inst/doc/labelr-special-topics.Rmd | 22 +- inst/doc/labelr-special-topics.html | 195 ++++++++++---------- man/add_lab_col1.Rd | 7 man/add_lab_cols.Rd | 2 man/add_lab_dumm1.Rd | 5 man/add_lab_dummies.Rd | 10 - man/add_m1_lab.Rd | 30 +-- man/add_name_labs.Rd | 5 man/add_quant1.Rd | 4 man/all_quant_labs.Rd | 2 man/all_uniquev.Rd | 4 man/as_numv.Rd | 2 man/axis_lab.Rd | 7 man/convert_labs.Rd | 2 man/factor_to_lab_int.Rd | 1 man/flab.Rd | 4 man/get_all_factors.Rd | 2 man/has_decv.Rd | 3 man/headl.Rd | 4 man/make_demo_data.Rd | 6 man/recode_vals.Rd | 2 man/restore_factor_info.Rd | 2 man/slab.Rd | 4 man/somel.Rd | 4 man/sreplace.Rd | 1 man/taill.Rd | 4 man/transfer_labs.Rd | 4 man/use_val_labs.Rd | 2 man/v.Rd |only man/with_val_labs.Rd | 4 vignettes/labelr-introduction.Rmd | 10 - vignettes/labelr-special-topics.Rmd | 22 +- 68 files changed, 517 insertions(+), 509 deletions(-)
Title: Dynamic Multi Environment Phenology-Model
Description: Mechanistically models/predicts the phenology (macro-phases) of 10 crop plants (trained on a big dataset over 80 years derived from the German weather service (DWD) <https://opendata.dwd.de/>). Can be applied for remote sensing purposes, dynamically check the best subset of available covariates for the given dataset and crop.
Author: Flavian Tschurr
Maintainer: Flavian Tschurr <flavian.tschurr@usys.ethz.ch>
Diff between DyMEP versions 0.1.0 dated 2024-04-18 and 0.1.2 dated 2024-05-02
DESCRIPTION | 6 ++--- MD5 | 22 ++++++++++----------- NEWS.md | 13 +++++++++++- R/DyMEP_pheno_phase_prediction.R | 16 +++++++-------- R/DyMEP_utils_prediction_helper_functions.R | 2 - R/DyMEP_visualizer.R | 4 +-- R/pkg.R | 2 - man/DyMEP.Rd | 2 - man/DyMEP_DRC_visualizer.Rd | 2 - man/DyMEP_prediction_visualizer.Rd | 2 - man/pheno_phase_prediction.Rd | 2 - tests/testthat/test-DyMEP_pheno_phase_prediction.R | 2 - 12 files changed, 43 insertions(+), 32 deletions(-)
Title: Network Analysis of Dependencies of CRAN Packages
Description: The dependencies of CRAN packages can be analysed in a network fashion. For each package we can obtain the packages that it depends, imports, suggests, etc. By iterating this procedure over a number of packages, we can build, visualise, and analyse the dependency network, enabling us to have a bird's-eye view of the CRAN ecosystem. One aspect of interest is the number of reverse dependencies of the packages, or equivalently the in-degree distribution of the dependency network. This can be fitted by the power law and/or an extreme value mixture distribution <doi:10.48550/arXiv.2008.03073>, of which functions are provided.
Author: Clement Lee [aut, cre]
Maintainer: Clement Lee <clement.lee.tm@outlook.com>
Diff between crandep versions 0.3.7 dated 2024-03-28 and 0.3.8 dated 2024-05-02
DESCRIPTION | 8 ++-- MD5 | 44 ++++++++++++------------ NEWS.md | 10 +++++ R/RcppExports.R | 36 +++++++++---------- R/optim.R | 53 ++++++++++++++++++++--------- build/vignette.rds |binary inst/doc/cran.html | 61 +++++++++++++++++---------------- inst/doc/degree.R | 2 - inst/doc/degree.Rmd | 2 - inst/doc/degree.html | 54 ++++++++++++++--------------- inst/doc/introduction.html | 8 ++-- man/Spol.Rd | 4 +- man/dpol.Rd | 4 +- man/mcmc_mix1.Rd | 4 +- man/mcmc_mix1_wrapper.Rd | 12 ++++-- man/mcmc_mix2_wrapper.Rd | 8 +++- man/mcmc_mix3_wrapper.Rd | 11 +++++- man/mcmc_pol.Rd | 4 +- man/mcmc_pol_wrapper.Rd | 6 +-- man/obtain_u_set_mix1.Rd | 4 +- src/RcppExports.cpp | 56 +++++++++++++++--------------- src/algo.cpp | 82 ++++++++++++++++++++++----------------------- vignettes/degree.Rmd | 2 - 23 files changed, 264 insertions(+), 211 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-20 1.0.1
2024-01-19 1.0.0
Title: Estimates and Plots Single-Level and Multilevel Latent Class
Models
Description: Efficiently estimates single- and multilevel latent class models with covariates, allowing for output visualization in all specifications. For more technical details, see Lyrvall et al (2023) <doi:10.48550/arXiv.2305.07276>.
Author: Roberto Di Mari [aut, cre],
Johan Lyrvall [aut],
Zsuzsa Bakk [ctb],
Jennifer Oser [ctb],
Jouni Kuha [ctb]
Maintainer: Roberto Di Mari <roberto.dimari@unict.it>
Diff between multilevLCA versions 1.5 dated 2024-02-20 and 1.5.1 dated 2024-05-02
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- build/partial.rdb |binary src/LCAfit.cpp | 8 ++++---- src/multilevLC_EM.cpp | 18 +++++++++--------- 5 files changed, 22 insertions(+), 22 deletions(-)
Title: Targeted Maximum Likelihood Estimation
Description: Targeted maximum likelihood estimation of point treatment effects (Targeted Maximum Likelihood Learning, The International Journal of Biostatistics, 2(1), 2006. This version automatically estimates the additive treatment effect among the treated (ATT) and among the controls (ATC). The tmle() function calculates the adjusted marginal difference in mean outcome associated with a binary point treatment, for continuous or binary outcomes. Relative risk and odds ratio estimates are also reported for binary outcomes. Missingness in the outcome is allowed, but not in treatment assignment or baseline covariate values. The population mean is calculated when there is missingness, and no variation in the treatment assignment. The tmleMSM() function estimates the parameters of a marginal structural model for a binary point treatment effect. Effect estimation stratified by a binary mediating variable is also available. An ID argument can be used to identify repeated measures. Default settings c [...truncated...]
Author: Susan Gruber [aut, cre],
Mark van der Laan [aut],
Chris Kennedy [ctr]
Maintainer: Susan Gruber <sgruber@cal.berkeley.edu>
Diff between tmle versions 2.0.0 dated 2023-08-22 and 2.0.1 dated 2024-05-02
DESCRIPTION | 8 MD5 | 16 - NEWS | 6 R/tmle.R | 433 ++++++++++++++++++++++++++++++++++++------------- R/zzz.R | 2 man/estimateQ.Rd | 2 man/tmle-package.Rd | 2 man/tmle.Sl.dbarts2.Rd | 10 - man/tmleNews.Rd | 2 9 files changed, 351 insertions(+), 130 deletions(-)
Title: Collect and Install R Packages on a Specified Date with
Dependencies
Description: Works as a virtual CRAN snapshot for source packages.
It automatically downloads and installs 'tar.gz' files with dependencies,
all of which were available on a specific day.
Author: Ryota Suzuki <suzuki@ef-prime.com>
Maintainer: Ryota Suzuki <suzuki@ef-prime.com>
Diff between dateback versions 1.0.4 dated 2024-04-10 and 1.0.5 dated 2024-05-02
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/collect.R | 10 ++++++++-- R/internal.R | 9 ++++++--- 4 files changed, 20 insertions(+), 11 deletions(-)
Title: Short Sprints
Description: Create short sprint acceleration-velocity (AVP) and force-velocity (FVP) profiles
and predict kinematic and kinetic variables using the timing-gate split times, laser or
radar gun data, tether devices data, as well as the data provided by the GPS and LPS
monitoring systems. The modeling method utilized in this package is based on the works of
Furusawa K, Hill AV, Parkinson JL (1927) <doi: 10.1098/rspb.1927.0035>,
Greene PR. (1986) <doi: 10.1016/0025-5564(86)90063-5>,
Chelly SM, Denis C. (2001) <doi: 10.1097/00005768-200102000-00024>,
Clark KP, Rieger RH, Bruno RF, Stearne DJ. (2017) <doi: 10.1519/JSC.0000000000002081>,
Samozino P. (2018) <doi: 10.1007/978-3-319-05633-3_11>,
Samozino P. and Peyrot N., et al (2022) <doi: 10.1111/sms.14097>,
Clavel, P., et al (2023) <doi: 10.1016/j.jbiomech.2023.111602>,
Jovanovic M. (2023) <doi: 10.1080/10255842.2023.2170713>, and
Jovanovic M., et al (2024) <doi: 10.3390/s24092894>.
Author: Mladen Jovanovic [aut, cre, cph]
Maintainer: Mladen Jovanovic <coach.mladen.jovanovic@gmail.com>
Diff between shorts versions 3.1.0 dated 2024-01-21 and 3.1.1 dated 2024-05-02
DESCRIPTION | 11 MD5 | 44 +- NEWS.md | 11 R/model-in-situ.R | 18 - R/optimal-functions.R | 4 README.md | 497 +++++++++++++++--------------- data/split_times.rda |binary inst/CITATION | 2 man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-14-1.png |binary man/figures/README-unnamed-chunk-16-1.png |binary man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-18-1.png |binary man/figures/README-unnamed-chunk-19-1.png |binary man/figures/README-unnamed-chunk-20-1.png |binary man/figures/README-unnamed-chunk-23-1.png |binary man/figures/README-unnamed-chunk-24-1.png |binary man/figures/README-unnamed-chunk-32-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/model_functions.Rd | 6 23 files changed, 326 insertions(+), 267 deletions(-)
Title: Datasets and Functions for the Class "Modelling and Data
Analysis for Pharmaceutical Sciences"
Description: Provides datasets and functions for the class "Modelling and Data Analysis for Pharmaceutical Sciences".
The datasets can be used to present various methods of data analysis and statistical modeling.
Functions for data visualization are also implemented.
Author: Lionel Voirol [aut, cre],
Stephane Guerrier [aut],
Yuming Zhang [aut],
Luca Insolia [aut]
Maintainer: Lionel Voirol <lionelvoirol@hotmail.com>
Diff between idarps versions 0.0.3 dated 2023-04-21 and 0.0.4 dated 2024-05-02
DESCRIPTION | 6 ++--- MD5 | 14 +++++++----- NEWS.md | 4 +++ R/document_data.R | 60 +++++++++++++++++++++++++++++++++++++++++++++++++++- README.md | 8 ++++-- data/diabetes.RData |only data/kuwait_bp.rda |only man/covid.Rd | 2 - man/diabetes.Rd |only man/kuwait_bp.Rd |only 10 files changed, 81 insertions(+), 13 deletions(-)
Title: Obtaining Stars from Flat Tables
Description: Data in multidimensional systems is obtained from operational
systems and is transformed to adapt it to the new structure.
Frequently, the operations to be performed aim to transform a flat
table into a star schema. Transformations can be carried out using
professional extract, transform and load tools or tools intended for
data transformation for end users. With the tools mentioned, this
transformation can be carried out, but it requires a lot of work. The
main objective of this package is to define transformations that allow
obtaining stars from flat tables easily. In addition, it includes
basic data cleaning, dimension enrichment, incremental data refresh
and query operations, adapted to this context.
Author: Jose Samos [aut, cre] ,
Universidad de Granada [cph]
Maintainer: Jose Samos <jsamos@ugr.es>
Diff between starschemar versions 1.2.4 dated 2024-01-08 and 1.2.5 dated 2024-05-02
DESCRIPTION | 8 LICENSE | 4 MD5 | 106 +++--- NEWS.md | 5 R/starschemar.R | 256 ++++++++-------- data/ct_mrs.rda |binary data/ct_mrs_test.rda |binary data/ms_mrs.rda |binary data/ms_mrs_test.rda |binary data/st_mrs_age.rda |binary data/st_mrs_age_test.rda |binary data/st_mrs_age_w10.rda |binary data/st_mrs_age_w11.rda |binary data/st_mrs_age_w_test.rda |binary data/st_mrs_cause.rda |binary data/st_mrs_cause_test.rda |binary data/st_mrs_cause_w10.rda |binary data/st_mrs_cause_w11.rda |binary data/st_mrs_cause_w_test.rda |binary man/enrich_dimension_export.Rd | 86 ++--- man/filter_fact_rows.Rd | 98 +++--- man/get_conformed_dimension.Rd | 84 ++--- man/get_conformed_dimension_names.Rd | 80 ++--- man/get_dimension.Rd | 92 ++--- man/get_dimension_attribute_names.Rd | 74 ++-- man/get_dimension_names.Rd | 86 ++--- man/get_measure_names.Rd | 70 ++-- man/incremental_refresh_constellation.Rd | 104 +++--- man/incremental_refresh_star_schema.Rd | 106 +++--- man/match_records.Rd | 134 ++++---- man/modify_conformed_dimension_records.Rd | 108 +++--- man/modify_dimension_records.Rd | 112 +++---- man/purge_dimensions_constellation.Rd | 72 ++-- man/purge_dimensions_star_schema.Rd | 72 ++-- man/record_update_set.Rd | 80 ++--- man/rename_fact.Rd | 72 ++-- man/rename_measures.Rd | 80 ++--- man/starschemar.Rd | 334 ++++++++++----------- man/update_record.Rd | 128 ++++---- man/update_selection.Rd | 152 ++++----- man/update_selection_general.Rd | 164 +++++----- tests/testthat/test-enrich_dimension_import.R | 175 +++++------ tests/testthat/test-enrich_dimension_import_test.R | 58 +-- tests/testthat/test-filter_fact_rows.R | 62 +-- tests/testthat/test-new_fact_table.R | 68 ++-- tests/testthat/test-purge_dimensions.R | 116 +++---- tests/testthat/test-purge_dimensions_star_schema.R | 116 +++---- tests/testthat/test-rename_dimension.R | 170 +++++----- tests/testthat/test-rename_dimension_attributes.R | 44 +- tests/testthat/test-rename_fact.R | 58 +-- tests/testthat/test-rename_measures.R | 64 ++-- tests/testthat/test-replace_dimension_in_facts.R | 39 +- tests/testthat/test-role_dimension.R | 42 +- tests/testthat/test-run_query.R | 296 +++++++++--------- 54 files changed, 2039 insertions(+), 2036 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-21 0.3.0