Title: Statistical Methods for Graphs
Description: Contains statistical methods to analyze graphs, such as graph parameter estimation,
model selection based on the Graph Information Criterion, statistical tests to discriminate two or more populations of graphs,
correlation between graphs, and clustering of graphs.
References: Takahashi et al. (2012) <doi:10.1371/journal.pone.0049949>, Fujita et al. (2017) <doi:10.3389/fnins.2017.00066>,
Fujita et al. (2017) <doi:10.1016/j.csda.2016.11.016>, Fujita et al. (2019) <doi:10.1093/comnet/cnz028>.
Author: Grover E. Castro Guzman [aut],
Diogo R. da Costa [aut],
Taiane C. Ramos [aut],
Suzana S. Santos [aut],
Eduardo S. Lira [aut],
Andre Fujita [aut, cre]
Maintainer: Andre Fujita <andrefujita@usp.br>
Diff between statGraph versions 1.0.0 dated 2024-04-16 and 1.0.1 dated 2024-05-04
statGraph-1.0.0/statGraph/R/graph.tang.test.R |only statGraph-1.0.0/statGraph/man/graph.tang.test.Rd |only statGraph-1.0.1/statGraph/DESCRIPTION | 8 ++--- statGraph-1.0.1/statGraph/MD5 | 26 +++++++---------- statGraph-1.0.1/statGraph/NAMESPACE | 1 statGraph-1.0.1/statGraph/R/GIC.R | 6 ++- statGraph-1.0.1/statGraph/R/graph.cem.R | 2 - statGraph-1.0.1/statGraph/R/graph.kmeans.R | 3 + statGraph-1.0.1/statGraph/R/graph.models.R | 8 ++--- statGraph-1.0.1/statGraph/R/graph.param.estimator.R | 4 +- statGraph-1.0.1/statGraph/R/sp.anogva.R | 22 +++++--------- statGraph-1.0.1/statGraph/R/utils.R | 4 +- statGraph-1.0.1/statGraph/man/graph.cem.Rd | 2 - statGraph-1.0.1/statGraph/man/graph.param.estimator.Rd | 4 +- statGraph-1.0.1/statGraph/man/sp.anogva.Rd | 6 +-- 15 files changed, 45 insertions(+), 51 deletions(-)
Title: Radix Tree and Trie-Based String Distances
Description: A collection of Radix Tree and Trie algorithms for finding similar sequences and calculating sequence distances (Levenshtein and other distance metrics). This work was inspired by a trie implementation in Python: "Fast and Easy Levenshtein distance using a Trie." Hanov (2011) <http://stevehanov.ca/blog/index.php?id=114>.
Author: Travers Ching [aut, cre, cph],
Martin Moene [ctb, cph] ,
Steve Hanov [ctb] ,
Martin Leitner-Ankerl [ctb]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between seqtrie versions 0.2.6 dated 2024-01-27 and 0.2.8 dated 2024-05-04
seqtrie-0.2.6/seqtrie/R/covid_cdr3.R |only seqtrie-0.2.6/seqtrie/inst/include/pairwise |only seqtrie-0.2.6/seqtrie/src/seqtrie_utils.h |only seqtrie-0.2.8/seqtrie/ChangeLog | 7 seqtrie-0.2.8/seqtrie/DESCRIPTION | 23 +- seqtrie-0.2.8/seqtrie/MD5 | 48 ++--- seqtrie-0.2.8/seqtrie/R/RadixForest.R | 4 seqtrie-0.2.8/seqtrie/R/RadixTree.R | 4 seqtrie-0.2.8/seqtrie/R/covid_cdr3.r |only seqtrie-0.2.8/seqtrie/inst/doc/vignette.R | 9 - seqtrie-0.2.8/seqtrie/inst/doc/vignette.html | 10 - seqtrie-0.2.8/seqtrie/inst/doc/vignette.rmd | 9 - seqtrie-0.2.8/seqtrie/inst/include/ankerl |only seqtrie-0.2.8/seqtrie/inst/include/seqtrie/pairwise.h |only seqtrie-0.2.8/seqtrie/inst/include/seqtrie/radixmap.h | 14 - seqtrie-0.2.8/seqtrie/inst/include/seqtrie/utility.h | 18 -- seqtrie-0.2.8/seqtrie/man/covid_cdr3.Rd | 2 seqtrie-0.2.8/seqtrie/src/CharCounter.cpp | 5 seqtrie-0.2.8/seqtrie/src/Makevars | 6 seqtrie-0.2.8/seqtrie/src/Makevars.win | 3 seqtrie-0.2.8/seqtrie/src/RadixForest.cpp | 15 - seqtrie-0.2.8/seqtrie/src/RadixTree.cpp | 15 - seqtrie-0.2.8/seqtrie/src/pairwise.cpp | 17 - seqtrie-0.2.8/seqtrie/src/seqtrie_types.h | 161 ++++++++++++++++-- seqtrie-0.2.8/seqtrie/tests/test_RadixForest.R | 9 + seqtrie-0.2.8/seqtrie/tests/test_RadixTree.R | 8 seqtrie-0.2.8/seqtrie/tests/test_pairwise.R | 11 + seqtrie-0.2.8/seqtrie/vignettes/vignette.rmd | 9 - 28 files changed, 268 insertions(+), 139 deletions(-)
Title: Run Code as an RStudio Job - Free Your Console
Description: Call job::job({<code here>}) to run R code as an RStudio job and keep your console free in the meantime. This allows for a productive workflow while testing (multiple) long-running chunks of code. It can also be used to organize results using the RStudio Jobs GUI or to test code in a clean environment. Two RStudio Addins can be used to run selected code as a job.
Author: Jonas Kristoffer Lindeloev [aut, cre]
Maintainer: Jonas Kristoffer Lindeloev <jonas@lindeloev.dk>
Diff between job versions 0.3.0 dated 2021-06-04 and 0.3.1 dated 2024-05-04
DESCRIPTION | 11 LICENSE | 4 MD5 | 22 - NEWS.md | 11 R/call_utils.R | 120 +++--- R/job.R | 596 ++++++++++++++++---------------- R/misc.R | 52 +- README.md | 9 inst/rstudio/addins.dcf | 18 man/job.Rd | 5 tests/testthat/test_addins.R | 68 +-- tests/testthat/test_job.R | 786 +++++++++++++++++++++---------------------- 12 files changed, 868 insertions(+), 834 deletions(-)
Title: Tools to Support Relative Importance Analysis
Description: Methods to apply decomposition-based relative importance
analysis for R functions. This package supports the application of
decomposition methods by providing 'lapply'- or 'Map'-like meta-functions that
compute dominance analysis (Azen, R., & Budescu, D. V. (2003)
<doi:10.1037/1082-989X.8.2.129>; Grömping, U. (2007)
<doi:10.1198/000313007X188252>) an extension of Shapley value regression
(Lipovetsky, S., & Conklin, M. (2001) <doi:10.1002/asmb.446>)
based on the values returned from other functions.
Author: Joseph Luchman [aut, cre]
Maintainer: Joseph Luchman <jluchman@gmail.com>
Diff between domir versions 1.1.1 dated 2023-10-01 and 1.2.0 dated 2024-05-04
DESCRIPTION | 23 MD5 | 40 NEWS.md | 22 R/dominance_internals.r | 92 - R/domir-package.r | 29 R/domir.r | 2052 ++++++++++++++++------------------ R/formula_list.R | 117 + README.md | 241 +-- build/vignette.rds |binary inst/doc/domir_basics.R | 26 inst/doc/domir_basics.Rmd | 172 +- inst/doc/domir_basics.html | 608 +++++----- man/dominance_scalar.Rd | 7 man/domir-package.Rd | 29 man/domir.Rd | 127 +- man/figures |only man/formula_list.Rd | 12 man/formula_parse.Rd | 5 tests/testthat/test-Dominance_Stats.r | 55 tests/testthat/test-Features.r | 39 vignettes/domir_basics.Rmd | 172 +- vignettes/domir_basics.bib |only 22 files changed, 1953 insertions(+), 1915 deletions(-)
Title: Statistical Toolbox for Sedimentary Provenance Analysis
Description: Bundles a number of established statistical methods to facilitate the visual interpretation of large datasets in sedimentary geology. Includes functionality for adaptive kernel density estimation, principal component analysis, correspondence analysis, multidimensional scaling, generalised procrustes analysis and individual differences scaling using a variety of dissimilarity measures. Univariate provenance proxies, such as single-grain ages or (isotopic) compositions are compared with the Kolmogorov-Smirnov, Kuiper, Wasserstein-2 or Sircombe-Hazelton L2 distances. Categorical provenance proxies such as chemical compositions are compared with the Aitchison and Bray-Curtis distances,and count data with the chi-square distance. Varietal data can either be converted to one or more distributional datasets, or directly compared using the multivariate Wasserstein distance. Also included are tools to plot compositional and count data on ternary diagrams and point-counting data on radial plots, [...truncated...]
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between provenance versions 4.2 dated 2023-08-28 and 4.3 dated 2024-05-04
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ R/plot.R | 10 +++++++++- R/radialplot.R | 6 +++--- R/toolbox.R | 18 +++++++++++++++--- man/provenance.Rd | 1 - man/radialplot.counts.Rd | 2 +- 7 files changed, 40 insertions(+), 21 deletions(-)
Title: Weighting for Covariate Balance in Observational Studies
Description: Generates balancing weights for causal effect estimation in observational studies with
binary, multi-category, or continuous point or longitudinal treatments by easing and
extending the functionality of several R packages and providing in-house estimation methods.
Available methods include propensity score weighting using generalized linear models, gradient
boosting machines, the covariate balancing propensity score algorithm, inverse probability tilting, Bayesian additive regression trees, and
SuperLearner, and directly estimating balancing weights using entropy balancing, energy balancing, and optimization-based weights. Also
allows for assessment of weights and checking of covariate balance by interfacing directly
with the 'cobalt' package. See the vignette "Installing Supporting Packages" for instructions on how
to install any package 'WeightIt' uses, including those that may not be on CRAN.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between WeightIt versions 1.0.0 dated 2024-03-23 and 1.1.0 dated 2024-05-04
WeightIt-1.0.0/WeightIt/R/zzz.R |only WeightIt-1.1.0/WeightIt/DESCRIPTION | 18 WeightIt-1.1.0/WeightIt/MD5 | 105 - WeightIt-1.1.0/WeightIt/NAMESPACE | 3 WeightIt-1.1.0/WeightIt/NEWS.md | 36 WeightIt-1.1.0/WeightIt/R/SHARED.R | 123 - WeightIt-1.1.0/WeightIt/R/calibrate.R | 4 WeightIt-1.1.0/WeightIt/R/functions_for_processing.R | 216 +- WeightIt-1.1.0/WeightIt/R/get_w_from_ps.R | 6 WeightIt-1.1.0/WeightIt/R/glm_weightit.R | 532 +++++- WeightIt-1.1.0/WeightIt/R/sbps.R | 4 WeightIt-1.1.0/WeightIt/R/summary.weightit.R | 110 - WeightIt-1.1.0/WeightIt/R/weightit.R | 134 + WeightIt-1.1.0/WeightIt/R/weightit.fit.R | 199 ++ WeightIt-1.1.0/WeightIt/R/weightit2bart.R | 42 WeightIt-1.1.0/WeightIt/R/weightit2cbps.R | 461 ++++- WeightIt-1.1.0/WeightIt/R/weightit2ebal.R | 82 - WeightIt-1.1.0/WeightIt/R/weightit2energy.R | 474 ++++- WeightIt-1.1.0/WeightIt/R/weightit2gbm.R | 235 +- WeightIt-1.1.0/WeightIt/R/weightit2glm.R | 256 ++- WeightIt-1.1.0/WeightIt/R/weightit2ipt.R | 114 - WeightIt-1.1.0/WeightIt/R/weightit2npcbps.R | 14 WeightIt-1.1.0/WeightIt/R/weightit2optweight.R | 30 WeightIt-1.1.0/WeightIt/R/weightit2ps.R | 16 WeightIt-1.1.0/WeightIt/R/weightit2super.R | 80 WeightIt-1.1.0/WeightIt/R/weightit2user.R | 58 WeightIt-1.1.0/WeightIt/R/weightitMSM.R | 51 WeightIt-1.1.0/WeightIt/README.md | 2 WeightIt-1.1.0/WeightIt/build/WeightIt.pdf |binary WeightIt-1.1.0/WeightIt/build/stage23.rdb |binary WeightIt-1.1.0/WeightIt/inst/doc/WeightIt.html | 364 +--- WeightIt-1.1.0/WeightIt/inst/doc/estimating-effects.R | 41 WeightIt-1.1.0/WeightIt/inst/doc/estimating-effects.Rmd | 87 - WeightIt-1.1.0/WeightIt/inst/doc/estimating-effects.html | 1138 +++++--------- WeightIt-1.1.0/WeightIt/inst/doc/installing-packages.html | 4 WeightIt-1.1.0/WeightIt/man/calibrate.Rd | 4 WeightIt-1.1.0/WeightIt/man/glm_weightit.Rd | 30 WeightIt-1.1.0/WeightIt/man/method_bart.Rd | 8 WeightIt-1.1.0/WeightIt/man/method_cbps.Rd | 43 WeightIt-1.1.0/WeightIt/man/method_ebal.Rd | 16 WeightIt-1.1.0/WeightIt/man/method_energy.Rd | 42 WeightIt-1.1.0/WeightIt/man/method_gbm.Rd | 15 WeightIt-1.1.0/WeightIt/man/method_glm.Rd | 37 WeightIt-1.1.0/WeightIt/man/method_npcbps.Rd | 4 WeightIt-1.1.0/WeightIt/man/method_optweight.Rd | 8 WeightIt-1.1.0/WeightIt/man/method_super.Rd | 8 WeightIt-1.1.0/WeightIt/man/method_user.Rd | 53 WeightIt-1.1.0/WeightIt/man/weightit.Rd | 16 WeightIt-1.1.0/WeightIt/man/weightitMSM.Rd | 7 WeightIt-1.1.0/WeightIt/tests |only WeightIt-1.1.0/WeightIt/vignettes/estimating-effects.Rmd | 87 - WeightIt-1.1.0/WeightIt/vignettes/references.bib | 76 52 files changed, 3432 insertions(+), 2061 deletions(-)
Title: A Unified Time Series Event Detection Framework
Description: By analyzing time series, it is possible to observe significant changes in the behavior of observations that frequently characterize events. Events present themselves as anomalies, change points, or motifs. In the literature, there are several methods for detecting events. However, searching for a suitable time series method is a complex task, especially considering that the nature of events is often unknown. This work presents Harbinger, a framework for integrating and analyzing event detection methods. Harbinger contains several state-of-the-art methods described in Salles et al. (2020) <doi:10.5753/sbbd.2020.13626>.
Author: Eduardo Ogasawara [aut, ths, cre]
,
Antonio Castro [aut],
Antonio Mello [aut],
Ellen Paixao [aut],
Fernando Fraga [aut],
Heraldo Borges [aut],
Janio Lima [aut],
Jessica Souza [aut],
Lais Baroni [aut],
Lucas Tavares [aut],
Rebecca Salles [aut],
Diego [...truncated...]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between harbinger versions 1.0.767 dated 2024-03-31 and 1.0.777 dated 2024-05-04
harbinger-1.0.767/harbinger/R/hcd_ddm.R |only harbinger-1.0.767/harbinger/R/hcd_eddm.R |only harbinger-1.0.767/harbinger/R/hcd_hddm.R |only harbinger-1.0.767/harbinger/R/hcd_page_hinkley.R |only harbinger-1.0.767/harbinger/data/har_examples.RData |only harbinger-1.0.767/harbinger/data/har_examples_multi.RData |only harbinger-1.0.767/harbinger/man/har_examples.Rd |only harbinger-1.0.767/harbinger/man/har_examples_multi.Rd |only harbinger-1.0.767/harbinger/man/hcd_ddm.Rd |only harbinger-1.0.767/harbinger/man/hcd_eddm.Rd |only harbinger-1.0.767/harbinger/man/hcd_hddm.Rd |only harbinger-1.0.767/harbinger/man/hcd_page_hinkley.Rd |only harbinger-1.0.777/harbinger/DESCRIPTION | 8 harbinger-1.0.777/harbinger/MD5 | 148 +++++------ harbinger-1.0.777/harbinger/NAMESPACE | 16 - harbinger-1.0.777/harbinger/R/data.R | 79 +++-- harbinger-1.0.777/harbinger/R/hanc_ml.R | 6 harbinger-1.0.777/harbinger/R/hanct_dtw.R | 6 harbinger-1.0.777/harbinger/R/hanct_kmeans.R | 6 harbinger-1.0.777/harbinger/R/hanr_arima.R | 6 harbinger-1.0.777/harbinger/R/hanr_emd.R | 31 +- harbinger-1.0.777/harbinger/R/hanr_fbiad.R | 6 harbinger-1.0.777/harbinger/R/hanr_fft.R | 8 harbinger-1.0.777/harbinger/R/hanr_garch.R | 6 harbinger-1.0.777/harbinger/R/hanr_hist.R | 6 harbinger-1.0.777/harbinger/R/hanr_ml.R | 6 harbinger-1.0.777/harbinger/R/hanr_red.R |only harbinger-1.0.777/harbinger/R/hanr_remd.R | 24 - harbinger-1.0.777/harbinger/R/hanr_wavelet.R | 6 harbinger-1.0.777/harbinger/R/har_eval.R | 5 harbinger-1.0.777/harbinger/R/har_eval_soft.R | 6 harbinger-1.0.777/harbinger/R/har_plot.R | 4 harbinger-1.0.777/harbinger/R/hcp_amoc.R | 8 harbinger-1.0.777/harbinger/R/hcp_binseg.R | 8 harbinger-1.0.777/harbinger/R/hcp_cf_arima.R | 6 harbinger-1.0.777/harbinger/R/hcp_cf_ets.R | 6 harbinger-1.0.777/harbinger/R/hcp_cf_lr.R | 6 harbinger-1.0.777/harbinger/R/hcp_chow.R | 6 harbinger-1.0.777/harbinger/R/hcp_garch.R | 6 harbinger-1.0.777/harbinger/R/hcp_gft.R | 6 harbinger-1.0.777/harbinger/R/hcp_pelt.R | 6 harbinger-1.0.777/harbinger/R/hcp_red.R |only harbinger-1.0.777/harbinger/R/hcp_scp.R | 6 harbinger-1.0.777/harbinger/R/hmo_mp.R | 6 harbinger-1.0.777/harbinger/R/hmo_sax.R | 6 harbinger-1.0.777/harbinger/R/hmo_xsax.R | 6 harbinger-1.0.777/harbinger/R/hmu_pca.R | 6 harbinger-1.0.777/harbinger/R/mas.R | 6 harbinger-1.0.777/harbinger/data/examples_anomalies.RData |only harbinger-1.0.777/harbinger/data/examples_changepoints.RData |only harbinger-1.0.777/harbinger/data/examples_harbinger.RData |only harbinger-1.0.777/harbinger/man/examples_anomalies.Rd |only harbinger-1.0.777/harbinger/man/examples_changepoints.Rd |only harbinger-1.0.777/harbinger/man/examples_harbinger.Rd |only harbinger-1.0.777/harbinger/man/hanc_ml.Rd | 6 harbinger-1.0.777/harbinger/man/hanct_dtw.Rd | 6 harbinger-1.0.777/harbinger/man/hanct_kmeans.Rd | 6 harbinger-1.0.777/harbinger/man/hanr_arima.Rd | 6 harbinger-1.0.777/harbinger/man/hanr_emd.Rd | 6 harbinger-1.0.777/harbinger/man/hanr_fbiad.Rd | 6 harbinger-1.0.777/harbinger/man/hanr_fft.Rd | 6 harbinger-1.0.777/harbinger/man/hanr_garch.Rd | 6 harbinger-1.0.777/harbinger/man/hanr_histogram.Rd | 6 harbinger-1.0.777/harbinger/man/hanr_ml.Rd | 6 harbinger-1.0.777/harbinger/man/hanr_red.Rd |only harbinger-1.0.777/harbinger/man/hanr_remd.Rd | 6 harbinger-1.0.777/harbinger/man/hanr_wavelet.Rd | 6 harbinger-1.0.777/harbinger/man/har_eval.Rd | 5 harbinger-1.0.777/harbinger/man/har_eval_soft.Rd | 6 harbinger-1.0.777/harbinger/man/har_plot.Rd | 4 harbinger-1.0.777/harbinger/man/hcp_amoc.Rd | 8 harbinger-1.0.777/harbinger/man/hcp_binseg.Rd | 8 harbinger-1.0.777/harbinger/man/hcp_cf_arima.Rd | 6 harbinger-1.0.777/harbinger/man/hcp_cf_ets.Rd | 6 harbinger-1.0.777/harbinger/man/hcp_cf_lr.Rd | 6 harbinger-1.0.777/harbinger/man/hcp_chow.Rd | 6 harbinger-1.0.777/harbinger/man/hcp_garch.Rd | 6 harbinger-1.0.777/harbinger/man/hcp_gft.Rd | 6 harbinger-1.0.777/harbinger/man/hcp_pelt.Rd | 6 harbinger-1.0.777/harbinger/man/hcp_red.Rd |only harbinger-1.0.777/harbinger/man/hcp_scp.Rd | 6 harbinger-1.0.777/harbinger/man/hmo_mp.Rd | 6 harbinger-1.0.777/harbinger/man/hmo_sax.Rd | 6 harbinger-1.0.777/harbinger/man/hmo_xsax.Rd | 6 harbinger-1.0.777/harbinger/man/hmu_pca.Rd | 6 harbinger-1.0.777/harbinger/man/mas.Rd | 6 86 files changed, 339 insertions(+), 319 deletions(-)
Title: Web Interface to 'IsoplotR'
Description: Provides a graphical user interface to the 'IsoplotR' package for radiometric geochronology. The GUI runs in an internet browser and can either be used offline, or hosted on a server to provide online access to the 'IsoplotR' toolbox.
Author: Pieter Vermeesch [aut, cre],
Tim Band [ctb]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotRgui versions 6.1 dated 2024-02-17 and 6.2 dated 2024-05-04
DESCRIPTION | 11 +-- MD5 | 46 +++++++-------- R/IsoplotR.R | 12 ++-- inst/www/css/IsoplotR.css | 2 inst/www/help/isochron.html | 5 + inst/www/home/map.html | 39 +++++++++++-- inst/www/home/news.html | 50 ++++++++-------- inst/www/home/world.svg | 39 +++++++++++-- inst/www/js/IsoplotR.js | 50 ++++++++-------- inst/www/js/constants.json | 12 ++-- inst/www/js/examples.js | 4 - inst/www/js/settings.json | 3 - inst/www/locales/en/contextual_help.json | 16 +++-- inst/www/locales/en/dictionary_id.json | 15 ++--- inst/www/locales/en/home_id.json | 4 - inst/www/locales/es/dictionary_id.json | 12 ++-- inst/www/locales/zh_Hans/contextual_help.json | 14 ++-- inst/www/locales/zh_Hans/dictionary_id.json | 12 ++-- inst/www/options/Lu-Hf.html | 42 +++++++++----- inst/www/options/Rb-Sr.html | 30 ++++++---- inst/www/options/Re-Os.html | 60 ++++++++++++-------- inst/www/options/Sm-Nd.html | 78 +++++++++++++++++--------- inst/www/options/isochron.html | 9 +++ inst/www/version.txt | 2 24 files changed, 356 insertions(+), 211 deletions(-)
Title: Ab Initio Uncertainty Quantification
Description: Uncertainty quantification and inverse estimation by probabilistic generative models from the beginning of the data analysis. An example is a Fourier basis method for inverse estimation in scattering analysis of microscopy videos. It does not require specifying a certain range of Fourier bases and it substantially reduces computational cost via the generalized Schur algorithm. See the reference: Mengyang Gu, Yue He, Xubo Liu and Yimin Luo (2023), <doi:10.48550/arXiv.2309.02468>.
Author: Yue He [aut],
Xubo Liu [aut],
Mengyang Gu [aut, cre]
Maintainer: Mengyang Gu <mengyang@pstat.ucsb.edu>
Diff between AIUQ versions 0.5.1 dated 2024-02-12 and 0.5.2 dated 2024-05-04
CHANGELOG | 8 + DESCRIPTION | 8 - MD5 | 34 +++--- NAMESPACE | 1 R/AIUQ-package.R | 2 R/SAM.R | 86 ++++++++++------- R/aniso_SAM.R | 30 +++--- R/functions.R | 230 +++++++++++++++++++++++++++++++---------------- R/simulation.R | 2 R/structure.R | 8 - build/partial.rdb |binary man/FFT2D.Rd | 4 man/SAM.Rd | 11 +- man/get_isf.Rd | 4 man/log_lik.Rd | 1 man/log_lik_grad.Rd | 1 man/modeled_dqt.Rd | 4 man/param_uncertainty.Rd | 1 18 files changed, 272 insertions(+), 163 deletions(-)
Title: Further Resources to Assist Novice Developers
Description: Assist novice developers when preparing a single package or a set of integrated packages to submit to CRAN. Provide additional resources to facilitate the automation of the following individual or batch processing: check local source packages; build local .tar.gz source files; install packages from local .tar.gz files; detect conflicts between function names in the environment. The additional resources include determining the identity and ordering of the packages to process when updating an imported package.
Author: Barry Zeeberg [aut, cre]
Maintainer: Barry Zeeberg <barryz2013@gmail.com>
Diff between NoviceDeveloperResources2 versions 1.0 dated 2024-02-01 and 1.1.0 dated 2024-05-04
NoviceDeveloperResources2-1.0/NoviceDeveloperResources2/man/recursivePackageDependenciesWrapper.Rd |only NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/DESCRIPTION | 12 NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/MD5 | 35 - NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/NAMESPACE | 3 NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/R/NoviceDeveloperResources2.R | 310 +++++----- NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/build/vignette.rds |binary NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/inst/doc/NoviceDeveloperResources2.Rmd | 72 ++ NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/inst/doc/NoviceDeveloperResources2.html | 98 ++- NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/man/PackageDependencies.Rd | 13 NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/man/bottomUpRecursive.Rd | 7 NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/man/bottomUpRecursiveDriver.Rd | 7 NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/man/retrieveLeafNodes.Rd | 6 NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/man/retrieveNamespace.Rd |only NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/man/reversePackageDependencies.Rd | 7 NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/man/sortedInputForCheckBuildInstallSourcePackage.Rd | 8 NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/man/sortedInputForCheckBuildInstallSourcePackageDriver.Rd | 12 NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/vignettes/Figure10.jpg |only NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/vignettes/Figure8.jpg |binary NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/vignettes/Figure9.jpg |only NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/vignettes/NoviceDeveloperResources2.Rmd | 72 ++ NoviceDeveloperResources2-1.1.0/NoviceDeveloperResources2/vignettes/screen1.1.jpg |only 21 files changed, 442 insertions(+), 220 deletions(-)
More information about NoviceDeveloperResources2 at CRAN
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Title: 'RStudio' Package Manager
Description: Enables binary package installations on Linux distributions.
Provides access to 'RStudio' public repositories at
<https://packagemanager.posit.co>, and transparent management of
system requirements without administrative privileges. Currently supported
distributions are 'CentOS' / 'RHEL' 7-9, and several 'RHEL' derivatives
('Rocky Linux', 'AlmaLinux', 'Oracle Linux', and 'Amazon Linux' 2),
'openSUSE' / 'SLES' 15.4-5, 'Debian' 11-12, and 'Ubuntu' LTS 20-22.
Author: Inaki Ucar [aut, cph, cre] ,
R Core Team [aut, cph]
Maintainer: Inaki Ucar <iucar@fedoraproject.org>
Diff between rspm versions 0.5.1 dated 2024-05-01 and 0.5.2 dated 2024-05-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ inst/tinytest/test_integration.R | 2 +- 4 files changed, 11 insertions(+), 7 deletions(-)
Title: Enrichment Analysis Utilizing Active Subnetworks
Description: Enrichment analysis enables researchers to uncover mechanisms
underlying a phenotype. However, conventional methods for enrichment
analysis do not take into account protein-protein interaction information,
resulting in incomplete conclusions. pathfindR is a tool for enrichment
analysis utilizing active subnetworks. The main function identifies active
subnetworks in a protein-protein interaction network using a user-provided
list of genes and associated p values. It then performs enrichment analyses
on the identified subnetworks, identifying enriched terms (i.e. pathways or,
more broadly, gene sets) that possibly underlie the phenotype of interest.
pathfindR also offers functionalities to cluster the enriched terms and
identify representative terms in each cluster, to score the enriched terms
per sample and to visualize analysis results. The enrichment, clustering and
other methods implemented in pathfindR are described in detail in
Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R [...truncated...]
Author: Ege Ulgen [cre, cph] ,
Ozan Ozisik [aut]
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between pathfindR versions 2.4.0 dated 2024-04-28 and 2.4.1 dated 2024-05-04
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 6 ++++++ R/data_generation.R | 29 +++++------------------------ inst/doc/comparing_results.html | 6 +++--- inst/doc/intro_vignette.html | 6 +++--- inst/doc/manual_execution.html | 6 +++--- inst/doc/non_hs_analysis.html | 6 +++--- inst/doc/obtain_data.html | 6 +++--- inst/doc/visualization_vignette.html | 6 +++--- man/get_kegg_gsets.Rd | 2 +- tests/testthat/test-data_generation.R | 10 ++-------- 12 files changed, 46 insertions(+), 65 deletions(-)
Title: Statistical Toolbox for Radiometric Geochronology
Description: Plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using 'York', 'Titterington', 'Ludwig' and Omnivariant Generalised Least-Squares ('OGLS') approaches. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith') plots. Constructs total Pb-U, Pb-Pb, Th-Pb, K-Ca, Re-Os, Sm-Nd, Lu-Hf, Rb-Sr and 230Th-U isoch [...truncated...]
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotR versions 6.1 dated 2024-02-16 and 6.2 dated 2024-05-04
IsoplotR-6.1/IsoplotR/NEWS.md |only IsoplotR-6.1/IsoplotR/R/internals.R |only IsoplotR-6.1/IsoplotR/man/IsoplotR-internal.Rd |only IsoplotR-6.2/IsoplotR/DESCRIPTION | 9 IsoplotR-6.2/IsoplotR/MD5 | 129 ++--- IsoplotR-6.2/IsoplotR/R/ArAr.R | 30 - IsoplotR-6.2/IsoplotR/R/KCa.R | 16 IsoplotR-6.2/IsoplotR/R/LuHf.R | 19 IsoplotR-6.2/IsoplotR/R/MLyork.R | 62 +- IsoplotR-6.2/IsoplotR/R/PD.R | 38 - IsoplotR-6.2/IsoplotR/R/PbPb.R | 4 IsoplotR-6.2/IsoplotR/R/RbSr.R | 19 IsoplotR-6.2/IsoplotR/R/ReOs.R | 95 ++-- IsoplotR-6.2/IsoplotR/R/SmNd.R | 19 IsoplotR-6.2/IsoplotR/R/ThPb.R | 12 IsoplotR-6.2/IsoplotR/R/ThU.R | 39 - IsoplotR-6.2/IsoplotR/R/UPb.R | 221 ++++++--- IsoplotR-6.2/IsoplotR/R/UThHe.R | 18 IsoplotR-6.2/IsoplotR/R/age.R | 134 +++--- IsoplotR-6.2/IsoplotR/R/agespectrum.R | 30 - IsoplotR-6.2/IsoplotR/R/bayes.R | 19 IsoplotR-6.2/IsoplotR/R/cad.R | 6 IsoplotR-6.2/IsoplotR/R/central.R | 24 - IsoplotR-6.2/IsoplotR/R/ci.R | 32 + IsoplotR-6.2/IsoplotR/R/colourramp.R | 174 +++---- IsoplotR-6.2/IsoplotR/R/commonPb.R | 152 +++--- IsoplotR-6.2/IsoplotR/R/concordia.R | 122 ++--- IsoplotR-6.2/IsoplotR/R/constants.R | 6 IsoplotR-6.2/IsoplotR/R/discfilter.R | 24 - IsoplotR-6.2/IsoplotR/R/discordia.R | 28 - IsoplotR-6.2/IsoplotR/R/diseq.R | 42 - IsoplotR-6.2/IsoplotR/R/errorellipse.R | 53 ++ IsoplotR-6.2/IsoplotR/R/evolution.R | 50 +- IsoplotR-6.2/IsoplotR/R/fissiontracks.R | 48 +- IsoplotR-6.2/IsoplotR/R/flipper.R | 189 ++++++-- IsoplotR-6.2/IsoplotR/R/helioplot.R | 54 +- IsoplotR-6.2/IsoplotR/R/io.R | 102 ++-- IsoplotR-6.2/IsoplotR/R/isochron.R | 553 +++++++++++++++++-------- IsoplotR-6.2/IsoplotR/R/kde.R | 52 +- IsoplotR-6.2/IsoplotR/R/ludwig.R | 54 +- IsoplotR-6.2/IsoplotR/R/mds.R | 9 IsoplotR-6.2/IsoplotR/R/ogls.R | 14 IsoplotR-6.2/IsoplotR/R/peakfit.R | 38 - IsoplotR-6.2/IsoplotR/R/radialplot.R | 118 +++-- IsoplotR-6.2/IsoplotR/R/regression.R | 16 IsoplotR-6.2/IsoplotR/R/titterington.R | 46 +- IsoplotR-6.2/IsoplotR/R/tls.R | 18 IsoplotR-6.2/IsoplotR/R/toolbox.R | 46 -- IsoplotR-6.2/IsoplotR/R/weightedmean.R | 29 - IsoplotR-6.2/IsoplotR/R/york.R | 45 +- IsoplotR-6.2/IsoplotR/R/york2ludwig.R | 66 +- IsoplotR-6.2/IsoplotR/inst/SmNd3.csv | 8 IsoplotR-6.2/IsoplotR/inst/constants.json | 12 IsoplotR-6.2/IsoplotR/man/age.Rd | 12 IsoplotR-6.2/IsoplotR/man/age2ratio.Rd | 13 IsoplotR-6.2/IsoplotR/man/cad.Rd | 2 IsoplotR-6.2/IsoplotR/man/concordia.Rd | 14 IsoplotR-6.2/IsoplotR/man/discfilter.Rd | 2 IsoplotR-6.2/IsoplotR/man/isochron.Rd | 16 IsoplotR-6.2/IsoplotR/man/kde.Rd | 2 IsoplotR-6.2/IsoplotR/man/ludwig.Rd | 6 IsoplotR-6.2/IsoplotR/man/mclean.Rd | 2 IsoplotR-6.2/IsoplotR/man/peakfit.Rd | 2 IsoplotR-6.2/IsoplotR/man/radialplot.Rd | 4 IsoplotR-6.2/IsoplotR/man/scatterplot.Rd | 12 IsoplotR-6.2/IsoplotR/man/settings.Rd | 6 IsoplotR-6.2/IsoplotR/man/weightedmean.Rd | 2 67 files changed, 1864 insertions(+), 1374 deletions(-)
Title: Using R to Run 'JAGS'
Description: Providing wrapper functions to implement Bayesian analysis in JAGS. Some major features include monitoring convergence of a MCMC model using Rubin and Gelman Rhat statistics, automatically running a MCMC model till it converges, and implementing parallel processing of a MCMC model for multiple chains.
Author: Yu-Sung Su [aut, cre] ,
Masanao Yajima [aut]
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>
Diff between R2jags versions 0.7-1.1 dated 2024-02-05 and 0.8-5 dated 2024-05-04
CHANGELOG | 17 +++++++++++++++++ DESCRIPTION | 23 +++++++++++++---------- MD5 | 19 ++++++++++--------- NAMESPACE | 2 ++ R/as.bugs.array2.R | 53 ++++++++++++++++++++++++++++++++++++++++++++++++----- R/as.mcmc.R | 2 +- R/jags.R | 7 ++++--- R/jags.sims.R | 9 +++------ R/mcmc2bugs.R | 2 +- README.md |only man/jags.Rd | 19 +++++++++++-------- 11 files changed, 110 insertions(+), 43 deletions(-)
Title: Reading Bibliometric Data from Lattes Platform
Description: A simple API for downloading and reading xml data directly from Lattes <http://lattes.cnpq.br/>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetLattesData versions 1.4.3 dated 2023-08-09 and 1.5 dated 2024-05-04
GetLattesData-1.4.3/GetLattesData/inst/extdata/Qualis_2013-2016.zip |only GetLattesData-1.4.3/GetLattesData/inst/extdata/scimagojr_2016_shortver.zip |only GetLattesData-1.5/GetLattesData/DESCRIPTION | 14 - GetLattesData-1.5/GetLattesData/MD5 | 25 +- GetLattesData-1.5/GetLattesData/NEWS.md | 11 + GetLattesData-1.5/GetLattesData/R/gld_get_lattes_data_from_zip.R | 13 + GetLattesData-1.5/GetLattesData/R/gld_read_lattes_zip.R | 81 +++++++- GetLattesData-1.5/GetLattesData/R/gld_utils.R | 57 ++++- GetLattesData-1.5/GetLattesData/build/vignette.rds |binary GetLattesData-1.5/GetLattesData/inst/doc/gld_vignette-ReadLattes.R | 2 GetLattesData-1.5/GetLattesData/inst/doc/gld_vignette-ReadLattes.html | 99 +++++----- GetLattesData-1.5/GetLattesData/inst/extdata/3262699324398819.zip |binary GetLattesData-1.5/GetLattesData/inst/extdata/Qualis_2017-2020.xlsx |only GetLattesData-1.5/GetLattesData/inst/extdata/fixed_scimagojr_2022_csv.csv |only GetLattesData-1.5/GetLattesData/inst/scripts |only GetLattesData-1.5/GetLattesData/tests/testthat/test_gld.R | 3 16 files changed, 213 insertions(+), 92 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-08 2.3.3
2024-01-22 2.3.2
2023-08-18 2.3.1
2023-04-24 2.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-15 1.0.3
2019-12-09 1.0.2
2016-11-17 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-01 1.4
2021-03-21 1.3
2019-11-13 1.2
2019-08-24 1.1
2019-06-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-18 0.3.17
2022-08-31 0.3.13
2022-02-01 0.3.12
2021-05-13 0.3.9
2021-02-12 0.3.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-07 0.2.6
2022-02-14 0.2.5
2021-05-24 0.2.4
2021-05-09 0.2.3
2020-12-16 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-07 1.2.5
2023-05-23 1.2.2
2023-04-15 1.1.9
2023-03-23 1.1.5
2023-03-01 1.1.3
2023-01-19 1.1.0
2022-11-23 1.0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-28 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-26 2.2
2015-03-03 2.0.1
2014-10-25 2.0
2014-02-25 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-21 0.5.0
Title: Generate Random Given and Surnames
Description: Function for generating random gender and ethnicity correct first and/or last names. Names are chosen proportionally based upon their probability of appearing in a large scale data base of real names.
Author: Damian W. Betebenner [aut, cre],
Lambert Joshua [ctb]
Maintainer: Damian W. Betebenner <dbetebenner@nciea.org>
Diff between randomNames versions 1.5-0.0 dated 2021-04-22 and 1.6-0.0 dated 2024-05-04
DESCRIPTION | 20 +- MD5 | 16 - R/randomNames.R | 170 +++++++++--------- R/zzz.R | 2 build/vignette.rds |binary inst/CITATION | 14 - inst/NEWS | 4 inst/doc/randomNames.html | 420 ++++++++++++++++++++++++++++++++++----------- man/randomNames-package.Rd | 4 9 files changed, 444 insertions(+), 206 deletions(-)
Title: Data Manipulation Functions Implemented in C
Description: Basic functions, implemented in C, for large data manipulation. Fast vectorised ifelse()/nested if()/switch() functions, psum()/pprod() functions equivalent to pmin()/pmax() plus others which are missing from base R. Most of these functions are callable at C level.
Author: Morgan Jacob [aut, cre, cph],
Sebastian Krantz [ctb]
Maintainer: Morgan Jacob <morgan.emailbox@gmail.com>
Diff between kit versions 0.0.16 dated 2024-02-29 and 0.0.17 dated 2024-05-04
DESCRIPTION | 8 ++--- MD5 | 32 ++++++++++---------- R/call.R | 2 - inst/NEWS.Rd | 15 +++++++++ src/dup.c | 8 +++-- src/dupLen.c | 2 - src/fpos.c | 2 - src/iif.c | 2 - src/nswitch.c | 72 +++++++++++++++++++++++------------------------ src/psort.c | 13 +++++--- src/psum.c | 2 - src/share.c | 2 - src/topn.c | 2 - src/utils.c | 2 - src/vswitch.c | 2 - tests/test_kit.R | 6 +++ tests/test_kit.Rout.save | 6 +++ 17 files changed, 105 insertions(+), 73 deletions(-)
Title: Access the Bioconductor Project Package Repository
Description: A convenient tool to install and update Bioconductor packages.
Author: Martin Morgan [aut] ,
Marcel Ramos [aut, cre]
Maintainer: Marcel Ramos <marcel.ramos@roswellpark.org>
Diff between BiocManager versions 1.30.22 dated 2023-08-08 and 1.30.23 dated 2024-05-04
BiocManager-1.30.22/BiocManager/R/BiocManager-pkg.R |only BiocManager-1.30.22/BiocManager/man/BiocManager-pkg.Rd |only BiocManager-1.30.23/BiocManager/DESCRIPTION | 11 BiocManager-1.30.23/BiocManager/MD5 | 22 BiocManager-1.30.23/BiocManager/R/BiocManager-package.R |only BiocManager-1.30.23/BiocManager/R/valid.R | 8 BiocManager-1.30.23/BiocManager/build/vignette.rds |binary BiocManager-1.30.23/BiocManager/inst/doc/BiocManager.R | 33 BiocManager-1.30.23/BiocManager/inst/doc/BiocManager.Rmd | 101 BiocManager-1.30.23/BiocManager/inst/doc/BiocManager.html | 1157 ++++++---- BiocManager-1.30.23/BiocManager/man/BiocManager-package.Rd |only BiocManager-1.30.23/BiocManager/tests/testthat/test_valid.R | 52 BiocManager-1.30.23/BiocManager/tests/testthat/test_version.R | 12 BiocManager-1.30.23/BiocManager/vignettes/BiocManager.Rmd | 101 14 files changed, 1102 insertions(+), 395 deletions(-)
Title: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic
Phenomena
Description: Statistical methods for the modeling and monitoring of time series
of counts, proportions and categorical data, as well as for the modeling
of continuous-time point processes of epidemic phenomena.
The monitoring methods focus on aberration detection in count data time
series from public health surveillance of communicable diseases, but
applications could just as well originate from environmetrics,
reliability engineering, econometrics, or social sciences. The package
implements many typical outbreak detection procedures such as the
(improved) Farrington algorithm, or the negative binomial GLR-CUSUM
method of Hoehle and Paul (2008) <doi:10.1016/j.csda.2008.02.015>.
A novel CUSUM approach combining logistic and multinomial logistic
modeling is also included. The package contains several real-world data
sets, the ability to simulate outbreak data, and to visualize the
results of the monitoring in a temporal, spatial or spatio-temporal
fashion. A recent overview of the available mon [...truncated...]
Author: Michael Hoehle [aut, ths] ,
Sebastian Meyer [aut, cre] ,
Michaela Paul [aut],
Leonhard Held [ctb, ths],
Howard Burkom [ctb],
Thais Correa [ctb],
Mathias Hofmann [ctb],
Christian Lang [ctb],
Juliane Manitz [ctb],
Andrea Riebler [ctb],
Daniel Sabanes B [...truncated...]
Maintainer: Sebastian Meyer <seb.meyer@fau.de>
Diff between surveillance versions 1.22.1 dated 2023-11-28 and 1.23.0 dated 2024-05-04
DESCRIPTION | 8 MD5 | 209 +++++++-------- NAMESPACE | 4 NEWS.md | 289 ++++++++++----------- R/LRCUSUM.runlength.R | 4 R/algo_call.R | 4 R/algo_cdc.R | 2 R/algo_farrington.R | 2 R/algo_glrnb.R | 4 R/algo_hmm.R | 2 R/algo_rogerson.R | 4 R/boda.R | 2 R/catCUSUM.R | 2 R/epidata.R | 2 R/epidataCS.R | 141 +++++----- R/epidataCS_methods.R | 42 ++- R/epidataCS_plot.R | 2 R/farringtonFlexible.R | 4 R/hhh4.R | 12 R/linelist2sts.R | 2 R/magic.dim.R | 2 R/nowcast.R | 12 R/pairedbinCUSUM.R | 4 R/sim_pointSource.R | 6 R/spatial_tools.R | 30 -- R/stsNC.R | 18 - R/stsNClist_animate.R | 6 R/stsplot_time.R | 2 R/twinSIR.R | 3 R/twinSIR_methods.R | 2 R/twinSIR_profile.R | 2 R/twinstim.R | 21 + R/twinstim_helper.R | 2 R/twinstim_siaf.R | 2 R/twinstim_siaf_powerlawL.R | 2 R/twinstim_siaf_step.R | 2 R/twinstim_tiaf.R | 2 R/wrap_univariate.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/glrnb.pdf |binary inst/doc/hhh4.pdf |binary inst/doc/hhh4_spacetime.Rnw | 2 inst/doc/hhh4_spacetime.pdf |binary inst/doc/monitoringCounts-cache |only inst/doc/monitoringCounts.R | 2 inst/doc/monitoringCounts.Rnw | 4 inst/doc/monitoringCounts.pdf |binary inst/doc/surveillance.Rnw | 4 inst/doc/surveillance.pdf |binary inst/doc/twinSIR.pdf |binary inst/doc/twinstim.R | 2 inst/doc/twinstim.Rnw | 6 inst/doc/twinstim.pdf |binary man/algo.farrington.threshold.Rd | 2 man/categoricalCUSUM.Rd | 5 man/discpoly.Rd | 4 man/epidataCS.Rd | 14 - man/epidataCS_aggregate.Rd | 2 man/epidataCS_animate.Rd | 4 man/epidataCS_plot.Rd | 16 - man/epidataCS_update.Rd | 30 +- man/epidata_animate.Rd | 2 man/fluBYBW.Rd | 2 man/hhh4_plot.Rd | 27 + man/imdepi.Rd | 4 man/intersectPolyCircle.Rd | 7 man/layout.labels.Rd | 12 man/macros |only man/measles.weser.Rd | 2 man/multiplicity.Rd | 2 man/multiplicity.Spatial.Rd | 6 man/plapply.Rd | 2 man/poly2adjmat.Rd | 4 man/polyAtBorder.Rd | 4 man/stK.Rd | 2 man/sts-class.Rd | 26 - man/sts_animate.Rd | 8 man/stsplot.Rd | 9 man/stsplot_space.Rd | 12 man/surveillance-defunct.Rd | 2 man/toLatex.sts.Rd | 2 man/twinstim.Rd | 10 man/twinstim_epitest.Rd | 2 man/twinstim_iaf.Rd | 2 man/twinstim_intensity.Rd | 12 man/twinstim_methods.Rd | 8 man/twinstim_simEndemicEvents.Rd | 4 man/twinstim_simulation.Rd | 30 +- man/unionSpatialPolygons.Rd | 2 man/untie.Rd | 2 src/stcd-assuncaocorrea.h | 2 src/surveillance.c | 16 - tests/testthat/test-bodaDelay.R | 2 tests/testthat/test-createLambda.R | 2 tests/testthat/test-nbOrder.R | 2 tests/testthat/test-twinstim_misc.R |only vignettes/.install_extras |only vignettes/hhh4_spacetime.Rnw | 2 vignettes/monitoringCounts-cache/boda.RData |binary vignettes/monitoringCounts-cache/boda.covars.RData |binary vignettes/monitoringCounts.Rnw | 4 vignettes/references.bib | 2 vignettes/surveillance.Rnw | 4 vignettes/twinstim.Rnw | 6 105 files changed, 620 insertions(+), 587 deletions(-)
Title: L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments,
and Many Distributions
Description: Extensive functions for Lmoments (LMs) and probability-weighted moments (PWMs),
distribution parameter estimation, LMs for distributions, LM ratio diagrams, multivariate
Lcomoments, and asymmetric (asy) trimmed LMs (TLMs). Maximum likelihood and
maximum product spacings estimation are available. Right-tail and left-tail LM censoring
by threshold or indicator variable are available. LMs of residual (resid) and reversed
(rev) residual life are implemented along with 13 quantile operators for reliability analyses.
Exact analytical bootstrap estimates of order statistics, LMs, and LM var-covars are available.
Harri-Coble Tau34-squared Normality Test is available. Distributions with L, TL, and added
(+) support for right-tail censoring (RC) encompass: Asy Exponential (Exp) Power [L],
Asy Triangular [L], Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen) Exp
Poisson [L], Gen Extreme Value [L], Gen Lambda [L, TL], Gen Logistic [L], Gen Normal [L],
Gen Pareto [L+RC, TL], Govindara [...truncated...]
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between lmomco versions 2.4.14 dated 2024-02-19 and 2.5.1 dated 2024-05-04
lmomco-2.4.14/lmomco/inst/doc/SysDataBuilder.R |only lmomco-2.5.1/lmomco/DESCRIPTION | 10 - lmomco-2.5.1/lmomco/MD5 | 91 +++++++------- lmomco-2.5.1/lmomco/NAMESPACE | 6 lmomco-2.5.1/lmomco/NEWS | 58 ++++++++ lmomco-2.5.1/lmomco/R/cdfst3.R | 6 lmomco-2.5.1/lmomco/R/lmomst3.R | 42 ++---- lmomco-2.5.1/lmomco/R/lmrdia.R | 14 +- lmomco-2.5.1/lmomco/R/lmrdia46.R |only lmomco-2.5.1/lmomco/R/parst3.R | 73 +++++------ lmomco-2.5.1/lmomco/R/pdfst3.R | 19 +- lmomco-2.5.1/lmomco/R/plotlmrdia.R | 149 +++++++++++++---------- lmomco-2.5.1/lmomco/R/plotlmrdia46.R |only lmomco-2.5.1/lmomco/R/quast3.R | 17 +- lmomco-2.5.1/lmomco/R/sysdata.rda |binary lmomco-2.5.1/lmomco/build/partial.rdb |binary lmomco-2.5.1/lmomco/inst/doc/SysDataBuilder01.R |only lmomco-2.5.1/lmomco/inst/doc/SysDataBuilder02.R |only lmomco-2.5.1/lmomco/inst/doc/t4t6 |only lmomco-2.5.1/lmomco/man/are.paraep4.valid.Rd | 1 lmomco-2.5.1/lmomco/man/cdfaep4.Rd | 3 lmomco-2.5.1/lmomco/man/cdfsla.Rd | 6 lmomco-2.5.1/lmomco/man/cdfst3.Rd | 4 lmomco-2.5.1/lmomco/man/headrick.sheng.lalpha.Rd | 2 lmomco-2.5.1/lmomco/man/is.aep4.Rd | 1 lmomco-2.5.1/lmomco/man/is.sla.Rd | 6 lmomco-2.5.1/lmomco/man/lmomaep4.Rd | 4 lmomco-2.5.1/lmomco/man/lmomcau.Rd | 10 + lmomco-2.5.1/lmomco/man/lmomcohash.Rd | 11 - lmomco-2.5.1/lmomco/man/lmomrice.Rd | 4 lmomco-2.5.1/lmomco/man/lmomsla.Rd | 26 ++-- lmomco-2.5.1/lmomco/man/lmomst3.Rd | 23 +-- lmomco-2.5.1/lmomco/man/lmrdia.Rd | 5 lmomco-2.5.1/lmomco/man/lmrdia46.Rd |only lmomco-2.5.1/lmomco/man/paraep4.Rd | 5 lmomco-2.5.1/lmomco/man/pargld.Rd | 65 +++------- lmomco-2.5.1/lmomco/man/parrice.Rd | 2 lmomco-2.5.1/lmomco/man/parsmd.Rd | 2 lmomco-2.5.1/lmomco/man/parst3.Rd | 13 +- lmomco-2.5.1/lmomco/man/pdfaep4.Rd | 3 lmomco-2.5.1/lmomco/man/pdfsla.Rd | 8 - lmomco-2.5.1/lmomco/man/pdfst3.Rd | 4 lmomco-2.5.1/lmomco/man/plotlmrdia.Rd | 90 +++++++------ lmomco-2.5.1/lmomco/man/plotlmrdia46.Rd |only lmomco-2.5.1/lmomco/man/qua.ostat.Rd | 27 ++-- lmomco-2.5.1/lmomco/man/quaaep4.Rd | 7 - lmomco-2.5.1/lmomco/man/quacau.Rd | 2 lmomco-2.5.1/lmomco/man/quast3.Rd | 6 48 files changed, 456 insertions(+), 369 deletions(-)
Title: Parsing, Applying, and Manipulating Data Cleaning Rules
Description: Please note: active development has moved to packages 'validate'
and 'errorlocate'. Facilitates reading and manipulating (multivariate) data
restrictions (edit rules) on numerical and categorical data. Rules can be
defined with common R syntax and parsed to an internal (matrix-like format).
Rules can be manipulated with variable elimination and value substitution
methods, allowing for feasibility checks and more. Data can be tested against
the rules and erroneous fields can be found based on Fellegi and Holt's
generalized principle. Rules dependencies can be visualized with using the
'igraph' package.
Author: Edwin de Jonge, Mark van der Loo
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between editrules versions 2.9.3 dated 2018-07-01 and 2.9.5 dated 2024-05-04
editrules-2.9.3/editrules/inst/doc/DeJongeVanderLoo2011-2.pdf |only editrules-2.9.3/editrules/inst/doc/DeJongeVanderLoo2011.pdf |only editrules-2.9.3/editrules/inst/doc/index.html |only editrules-2.9.3/editrules/man/editrules-package.Rd |only editrules-2.9.3/editrules/tests/testthat.R |only editrules-2.9.5/editrules/DESCRIPTION | 25 - editrules-2.9.5/editrules/MD5 | 157 ++++------ editrules-2.9.5/editrules/NAMESPACE | 13 editrules-2.9.5/editrules/R/backtracker.R | 2 editrules-2.9.5/editrules/R/cateditmatrix.R | 4 editrules-2.9.5/editrules/R/checkRows.R | 3 editrules-2.9.5/editrules/R/contains.R | 14 editrules-2.9.5/editrules/R/editarrayAttr.R | 5 editrules-2.9.5/editrules/R/editmatrix.R | 17 - editrules-2.9.5/editrules/R/editset.R | 3 editrules-2.9.5/editrules/R/errorLocalizer_mip.R | 10 editrules-2.9.5/editrules/R/errorLocation.R | 2 editrules-2.9.5/editrules/R/generateEdits.R | 2 editrules-2.9.5/editrules/R/isObviouslyInfeasible.R | 1 editrules-2.9.5/editrules/R/isObviouslyRedundant.R | 2 editrules-2.9.5/editrules/R/localizeErrors.R | 2 editrules-2.9.5/editrules/R/parseMix.R | 9 editrules-2.9.5/editrules/R/pkg.R | 14 editrules-2.9.5/editrules/R/plot.R | 6 editrules-2.9.5/editrules/R/plot_errorLocation.R | 2 editrules-2.9.5/editrules/R/summary.R | 1 editrules-2.9.5/editrules/R/violatedEdits.R | 1 editrules-2.9.5/editrules/build/vignette.rds |binary editrules-2.9.5/editrules/inst/doc/editrules-vignette.pdf |binary editrules-2.9.5/editrules/man/adjacency.Rd | 78 +++- editrules-2.9.5/editrules/man/as.mip.Rd | 11 editrules-2.9.5/editrules/man/backtracker.Rd | 11 editrules-2.9.5/editrules/man/blocks.Rd | 2 editrules-2.9.5/editrules/man/contains.Rd | 18 - editrules-2.9.5/editrules/man/contains.boolmat.Rd | 8 editrules-2.9.5/editrules/man/echelon.Rd | 2 editrules-2.9.5/editrules/man/editarray.Rd | 16 - editrules-2.9.5/editrules/man/editmatrix.Rd | 11 editrules-2.9.5/editrules/man/editrules.plotting.Rd | 81 +++-- editrules-2.9.5/editrules/man/editrules_package.Rd |only editrules-2.9.5/editrules/man/editset.Rd | 5 editrules-2.9.5/editrules/man/eliminate.Rd | 17 - editrules-2.9.5/editrules/man/errorLocalizer.Rd | 35 +- editrules-2.9.5/editrules/man/errorLocalizer_mip.Rd | 11 editrules-2.9.5/editrules/man/errorLocation.Rd | 2 editrules-2.9.5/editrules/man/expandEdits.Rd | 10 editrules-2.9.5/editrules/man/fcf.env.Rd | 4 editrules-2.9.5/editrules/man/getVars.Rd | 5 editrules-2.9.5/editrules/man/getVars.cateditmatrix.Rd | 3 editrules-2.9.5/editrules/man/getlevels.Rd | 2 editrules-2.9.5/editrules/man/is.editrules.Rd | 3 editrules-2.9.5/editrules/man/isObviouslyInfeasible.Rd | 3 editrules-2.9.5/editrules/man/localize.Rd | 14 editrules-2.9.5/editrules/man/localizeErrors.Rd | 16 - editrules-2.9.5/editrules/man/newerrorlocation.Rd | 10 editrules-2.9.5/editrules/man/parseCat.Rd | 10 editrules-2.9.5/editrules/man/parseCatEdit.Rd | 2 editrules-2.9.5/editrules/man/parseMix.Rd | 8 editrules-2.9.5/editrules/man/softEdits.editmatrix.Rd | 3 editrules-2.9.5/editrules/man/subsetting.Rd | 9 editrules-2.9.5/editrules/man/substValue.Rd | 3 editrules-2.9.5/editrules/man/violatedEdits.Rd | 4 editrules-2.9.5/editrules/man/writeELAsMip.Rd | 3 editrules-2.9.5/editrules/tests/test_all.R |only editrules-2.9.5/editrules/tests/testthat/testBlocks.R | 2 editrules-2.9.5/editrules/tests/testthat/testCheck.R | 2 editrules-2.9.5/editrules/tests/testthat/testEditRow.R | 2 editrules-2.9.5/editrules/tests/testthat/testEditset.R | 3 editrules-2.9.5/editrules/tests/testthat/testErrorLocalizer.R | 1 editrules-2.9.5/editrules/tests/testthat/testFourierMotzkin.R | 2 editrules-2.9.5/editrules/tests/testthat/testIsFeasible.R | 2 editrules-2.9.5/editrules/tests/testthat/testIsObviouslyInfeasible.R | 2 editrules-2.9.5/editrules/tests/testthat/testIsObviouslyRedundant.R | 2 editrules-2.9.5/editrules/tests/testthat/testLocalizeErrors.R | 5 editrules-2.9.5/editrules/tests/testthat/testParseEdits.R | 3 editrules-2.9.5/editrules/tests/testthat/testSubstValue.R | 1 editrules-2.9.5/editrules/tests/testthat/testViolatedEdits.R | 3 editrules-2.9.5/editrules/tests/testthat/testdatamodel.R | 1 editrules-2.9.5/editrules/tests/testthat/testeditarray.R | 4 editrules-2.9.5/editrules/tests/testthat/testeditmatrix.R | 2 editrules-2.9.5/editrules/tests/testthat/testeditmatrixAttr.R | 2 editrules-2.9.5/editrules/tests/testthat/testgetVars.R | 3 editrules-2.9.5/editrules/tests/testthat/testlocalizeErrors_mip.R | 2 83 files changed, 448 insertions(+), 311 deletions(-)