Title: Encapsulating Elements of Experimental Design
Description: A system to facilitate designing comparative (and non-comparative) experiments using the
grammar of experimental designs <https://emitanaka.org/edibble-book/>.
An experimental design is treated as an intermediate, mutable object that is
built progressively by fundamental experimental components like units, treatments, and their relation.
The system aids in experimental planning, management and workflow.
Author: Emi Tanaka [aut, cre, cph]
Maintainer: Emi Tanaka <dr.emi.tanaka@gmail.com>
Diff between edibble versions 1.1.0 dated 2023-11-12 and 1.1.1 dated 2024-05-05
DESCRIPTION | 15 +-- MD5 | 72 ++++++++-------- NAMESPACE | 22 ++++ NEWS.md | 14 ++- R/allot.R | 42 ++++++++- R/assign.R | 6 - R/attrs.R | 8 + R/edibble.R | 17 +++ R/fcts.R | 21 ++++ R/graph-input.R | 9 +- R/labels.R | 19 ++++ R/latin.R | 1 R/permute.R | 25 ++++- R/plot.R | 9 +- R/rcrds.R | 33 +++++-- R/serve.R | 4 R/simulate.R | 108 ++++++++++++++---------- R/units.R | 18 ---- R/utils.R | 182 +++++++++++++++++++++++++---------------- README.md | 37 ++++---- build |only inst/CITATION | 23 +++-- inst/doc |only man/allot_table.Rd | 2 man/allot_trts.Rd | 2 man/assign_fcts.Rd | 4 man/autofill_rcrds.Rd | 4 man/edibble-package.Rd | 4 man/examine_process.Rd | 4 man/expect_rcrds.Rd | 2 man/graph_input.Rd | 1 man/label_nested.Rd |only man/serve_table.Rd | 2 man/set_rcrds.Rd | 4 man/simulate_rcrds.Rd | 18 +++- tests/testthat/_snaps/rcrds.md | 60 ++++++------- tests/testthat/_snaps/trts.md | 108 ++++++++++++------------ vignettes |only 38 files changed, 579 insertions(+), 321 deletions(-)
Title: Normative Standards for Cognitive Tests
Description: Package test2norm contains functions to generate formulas for
normative standards applied to cognitive tests. It takes raw test scores
(e.g., number of correct responses) and converts them to scaled scores and
demographically adjusted scores, using methods described in Heaton et al.
(2003) <doi:10.1016/B978-012703570-3/50010-9> & Heaton et al. (2009,
ISBN:9780199702800). The scaled scores are calculated as quantiles of the
raw test scores, scaled to have the mean of 10 and standard deviation of 3,
such that higher values always correspond to better performance on the test.
The demographically adjusted scores are calculated from the residuals of a
model that regresses scaled scores on demographic predictors (e.g., age).
The norming procedure makes use of the mfp2() function from the 'mfp2'
package to explore nonlinear associations between cognition and demographic
variables.
Author: Anya Umlauf
Maintainer: Anya Umlauf <aumlauf@health.ucsd.edu>
Diff between test2norm versions 0.2.1 dated 2022-03-16 and 0.3.0 dated 2024-05-05
DESCRIPTION | 16 ++-- MD5 | 24 +++--- NAMESPACE | 10 ++ NEWS.md | 25 ++++-- R/Data_description.R | 4 - R/raw2scaled.R | 14 ++- R/score2adjust.R | 109 +++++++++++++++++++++------ R/test2norm.R | 196 ++++++++++++++++++++++++++++++++----------------- data/PsychTestData.rda |binary man/PsychTestData.Rd | 4 - man/raw2scaled.Rd | 10 +- man/score2adjust.Rd | 28 ++++--- man/test2norm.Rd | 33 ++++---- 13 files changed, 310 insertions(+), 163 deletions(-)
Title: Inbreeding and Numerator Relationship Coefficients
Description: Compute inbreeding coefficients using the method of Meuwissen and Luo (1992) <doi:10.1186/1297-9686-24-4-305>, and numerator relationship coefficients between individuals using the method of Van Vleck (2007) <https://pubmed.ncbi.nlm.nih.gov/18050089/>.
Author: Mohammad Ali Nilforooshan [aut, cre]
Maintainer: Mohammad Ali Nilforooshan <m.a.nilforooshan@gmail.com>
Diff between FnR versions 1.0.0 dated 2024-04-28 and 1.1.0 dated 2024-05-05
DESCRIPTION | 6 ++-- MD5 | 19 +++++++-------- NEWS.md |only R/calcR.R | 27 ++++++++++++++++++--- R/resume_inbreed.R | 7 ++--- README.md | 19 +++++++++++++++ inst/doc/demo.R | 7 +++++ inst/doc/demo.Rmd | 11 ++++++++ inst/doc/demo.html | 67 +++++++++++++++++++++++++++++++++++------------------ man/calcR.Rd | 20 +++++++++++++++ vignettes/demo.Rmd | 11 ++++++++ 11 files changed, 152 insertions(+), 42 deletions(-)
Title: A 'Shiny' App to Analyze Accelerometer-Measured Daily Physical
Behavior Data
Description: A tool to analyse 'ActiGraph' accelerometer data and to implement
the use of the PROactive Physical Activity in COPD (chronic obstructive pulmonary disease) instruments. Once analysis
is completed, the app allows to export results to .csv files and to generate
a report of the measurement. All the configured inputs relevant for interpreting
the results are recorded in the report. In addition to the existing 'R' packages
that are fully integrated with the app, the app uses some functions from the
'actigraph.sleepr' package developed by Petkova (2021) <https://github.com/dipetkov/actigraph.sleepr/>.
Author: Pierre-Yves de Muellenheim [cre, aut]
Maintainer: Pierre-Yves de Muellenheim <pydemull@uco.fr>
Diff between activAnalyzer versions 2.1.0 dated 2024-04-26 and 2.1.1 dated 2024-05-05
DESCRIPTION | 8 +-- MD5 | 34 ++++++------- NEWS.md | 4 + R/app_ui.R | 2 R/compute_accumulation_metrics.R | 89 ++++++++++++++++++++--------------- R/compute_intensity_distri_metrics.R | 2 R/compute_mx.R | 4 - R/create_fig_mx_summary.R | 2 R/create_fig_pal.R | 6 +- R/do_all_analyses.R | 7 +- R/get_ig_results.R | 2 R/mark_wear_time.R | 2 R/recap_by_day.R | 12 ++-- README.md | 2 inst/doc/activAnalyzer.html | 58 +++++++++++++++------- man/compute_mx.Rd | 4 - man/do_all_analyses.Rd | 6 +- man/recap_by_day.Rd | 12 ++-- 18 files changed, 153 insertions(+), 103 deletions(-)
Title: Infrastructure for Partially Observable Markov Decision
Processes (POMDP)
Description: Provides the infrastructure to define and analyze the solutions of Partially Observable Markov Decision Process (POMDP) models. Interfaces for various exact and approximate solution algorithms are available including value iteration, point-based value iteration and SARSOP. Smallwood and Sondik (1973) <doi:10.1287/opre.21.5.1071>.
Author: Michael Hahsler [aut, cph, cre]
,
Hossein Kamalzadeh [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between pomdp versions 1.2.2 dated 2024-04-23 and 1.2.3 dated 2024-05-05
DESCRIPTION | 8 +++---- MD5 | 24 ++++++++++----------- NEWS.md | 7 ++---- R/simulate_POMDP.R | 4 ++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/gridworlds.html | 52 +++++++++++++++++++++++------------------------ inst/doc/pomdp.html | 12 +++++----- src/POMDP.cpp | 26 +++++++++++------------ src/math.cpp | 9 ++++---- src/model.cpp | 16 +++++++++----- src/model.h | 2 - src/simulate_POMDP.cpp | 1 13 files changed, 83 insertions(+), 78 deletions(-)
Title: The Online Regularized K-Means Clustering Algorithm
Description: Algorithm of online regularized k-means to deal with online multi(single) view data.
The philosophy of the package is described in Guo G. (2020)
<doi:10.1080/02331888.2020.1823979>.
Author: Guangbao Guo [aut, cre] ,
Miao Yu [aut],
Haoyue Song [aut],
Ruiling Niu [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between ORKM versions 0.7.0.0 dated 2023-05-25 and 0.8.0.0 dated 2024-05-05
DESCRIPTION | 8 ++++---- MD5 | 6 +++++- build |only data/labelcora.rda |only man/ORKM-package.Rd |only man/labelcora.Rd |only 6 files changed, 9 insertions(+), 5 deletions(-)
Title: MAnifold-Constrained Gaussian Process Inference
Description: Provides fast and accurate inference for the parameter estimation problem in Ordinary Differential
Equations, including the case when there are unobserved system components. Implements the MAGI method
(MAnifold-constrained Gaussian process Inference) of Yang, Wong, and Kou (2021) <doi:10.1073/pnas.2020397118>.
A user guide is provided by the accompanying software paper Wong, Yang, and Kou (2024) <doi:10.18637/jss.v109.i04>.
Author: Shihao Yang [aut, cre] ,
Samuel W.K. Wong [aut] ,
S.C. Kou [ctb, cph]
Maintainer: Shihao Yang <shihao.yang@isye.gatech.edu>
Diff between magi versions 1.2.2 dated 2023-04-25 and 1.2.3 dated 2024-05-05
DESCRIPTION | 13 ++++++------ MD5 | 23 +++++++++++---------- R/magi-package.R | 5 ++-- R/wrapper.R | 10 ++++++--- R/zzz.R | 8 ++----- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/doc/magi-vignette.Rmd | 2 - inst/doc/magi-vignette.html | 47 ++++++++++++++++++++++++-------------------- man/MagiSolver.Rd | 5 +++- man/magi.Rd | 6 ++--- vignettes/magi-vignette.Rmd | 2 - 13 files changed, 67 insertions(+), 54 deletions(-)
Title: Working with Healthcare Databases
Description: A system for identifying diseases or events from healthcare databases and
preparing data for epidemiological studies. It includes capabilities not
supported by 'SQL', such as matching strings by 'stringr' style regular
expressions, and can compute comorbidity scores (Quan et al. (2005)
<doi:10.1097/01.mlr.0000182534.19832.83>) directly on a database server. The
implementation is based on 'dbplyr' with full 'tidyverse' compatibility.
Author: Kevin Hu [aut, cre, cph]
Maintainer: Kevin Hu <kevin.hu@bccdc.ca>
Diff between healthdb versions 0.1.0 dated 2024-04-27 and 0.2.0 dated 2024-05-05
DESCRIPTION | 12 MD5 | 115 +++---- NAMESPACE | 2 NEWS.md | 22 + R/bind_source.R | 8 R/build_def.R | 8 R/collapse_episode.R | 19 - R/compute_comorbidity.R | 2 R/cut_period.R | 29 + R/define_case.R | 10 R/exclude.R | 14 R/execute_def.R | 15 R/fetch_var.R | 4 R/healthdb-package.R | 44 +- R/identify_rows_dataframe.R | 15 R/identify_rows_sql.R | 32 +- R/if_dates.R | 77 +++- R/make_test_dat.R | 4 R/pool_case.R | 38 +- R/report_n.R | 7 R/restrict_dates.R | 30 + R/restrict_dates_dataframe.R | 63 +--- R/restrict_dates_sql.R | 388 +++++++++++++++++++------ R/restrict_n.R | 9 R/restrict_n_dataframe.R | 3 R/restrict_n_sql.R | 4 README.md | 94 +++--- inst/doc/Intro.R | 2 inst/doc/Intro.Rmd | 128 ++++---- inst/doc/Intro.html | 225 ++++++-------- man/bind_source.Rd | 7 man/build_def.Rd | 8 man/collapse_episode.Rd | 22 - man/compute_comorbidity.Rd | 2 man/cut_period.Rd | 8 man/define_case.Rd | 2 man/exclude.Rd | 6 man/execute_def.Rd | 2 man/healthdb-package.Rd | 2 man/if_date.Rd | 4 man/make_test_dat.Rd | 4 man/pool_case.Rd | 21 - man/report_n.Rd | 7 man/restrict_date.Rd | 23 - man/restrict_n.Rd | 9 tests/testthat/helper.R | 3 tests/testthat/test-bind_source.R | 4 tests/testthat/test-cut_period.R | 15 tests/testthat/test-define_case.R | 14 tests/testthat/test-exclude.R | 6 tests/testthat/test-fetch_var.R | 9 tests/testthat/test-identify_rows_sql.R | 4 tests/testthat/test-if_dates.R | 31 + tests/testthat/test-pool_case.R | 159 ++++++---- tests/testthat/test-restrict_dates_dataframe.R | 10 tests/testthat/test-restrict_dates_sql.R | 70 ++++ tests/testthat/test-restrict_n_dataframe.R | 2 tests/testthat/test-zzz.R |only vignettes/Intro.Rmd | 128 ++++---- 59 files changed, 1244 insertions(+), 761 deletions(-)
Title: Functions for Tabular Reporting
Description: Use a grammar for creating and customizing pretty tables.
The following formats are supported: 'HTML', 'PDF', 'RTF', 'Microsoft
Word', 'Microsoft PowerPoint' and R 'Grid Graphics'. 'R Markdown',
'Quarto' and the package 'officer' can be used to produce the result
files. The syntax is the same for the user regardless of the type of
output to be produced. A set of functions allows the creation,
definition of cell arrangement, addition of headers or footers,
formatting and definition of cell content with text and or images. The
package also offers a set of high-level functions that allow tabular
reporting of statistical models and the creation of complex cross
tabulations.
Author: David Gohel [aut, cre],
ArData [cph],
Clementine Jager [ctb],
Panagiotis Skintzos [aut],
Quentin Fazilleau [ctb],
Maxim Nazarov [ctb] ,
Titouan Robert [ctb],
Michael Barrowman [ctb] ,
Atsushi Yasumoto [ctb] ,
Paul Julian [ctb] ,
Sean Browning [ctb] , [...truncated...]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.9.5 dated 2024-03-06 and 0.9.6 dated 2024-05-05
flextable-0.9.5/flextable/tests/testthat/test-as-flextable.R |only flextable-0.9.5/flextable/tests/testthat/test-cell-content.R |only flextable-0.9.5/flextable/tests/testthat/test-keep-next.R |only flextable-0.9.5/flextable/tests/testthat/zzzzz.R |only flextable-0.9.6/flextable/DESCRIPTION | 84 +-- flextable-0.9.6/flextable/MD5 | 123 ++-- flextable-0.9.6/flextable/NAMESPACE | 4 flextable-0.9.6/flextable/NEWS.md | 40 + flextable-0.9.6/flextable/R/as_flextable.tabular.R | 6 flextable-0.9.6/flextable/R/body_add_flextable.R | 55 -- flextable-0.9.6/flextable/R/chunk_images.R | 5 flextable-0.9.6/flextable/R/df_printer.R | 1 flextable-0.9.6/flextable/R/grid_funs.R | 10 flextable-0.9.6/flextable/R/grid_grobs.R | 1 flextable-0.9.6/flextable/R/latex_str.R | 5 flextable-0.9.6/flextable/R/ph_with.R | 17 flextable-0.9.6/flextable/R/printers.R | 86 +-- flextable-0.9.6/flextable/R/styles.R | 55 +- flextable-0.9.6/flextable/R/zz-defunct.R |only flextable-0.9.6/flextable/build/vignette.rds |binary flextable-0.9.6/flextable/inst/snapshots_for_manual_tests |only flextable-0.9.6/flextable/man/align.Rd | 35 - flextable-0.9.6/flextable/man/flextable-package.Rd | 1 flextable-0.9.6/flextable/man/flextable_to_rmd.Rd | 8 flextable-0.9.6/flextable/man/footers_flextable_at_bkm.Rd | 16 flextable-0.9.6/flextable/man/gen_grob.Rd | 9 flextable-0.9.6/flextable/man/headers_flextable_at_bkm.Rd | 16 flextable-0.9.6/flextable/man/lollipop.Rd | 4 flextable-0.9.6/flextable/man/ph_with.flextable.Rd | 16 flextable-0.9.6/flextable/man/plot.flextable.Rd | 9 flextable-0.9.6/flextable/man/save_as_image.Rd | 11 flextable-0.9.6/flextable/tests/testthat.R | 2 flextable-0.9.6/flextable/tests/testthat/rmd/use-printer.Rmd |only flextable-0.9.6/flextable/tests/testthat/setup.R |only flextable-0.9.6/flextable/tests/testthat/test-as_flextable.R | 292 ++++++++--- flextable-0.9.6/flextable/tests/testthat/test-borders.R | 90 +-- flextable-0.9.6/flextable/tests/testthat/test-captions-rmd.R | 39 - flextable-0.9.6/flextable/tests/testthat/test-cell_content.R |only flextable-0.9.6/flextable/tests/testthat/test-df_printer.R |only flextable-0.9.6/flextable/tests/testthat/test-dimensions.R | 5 flextable-0.9.6/flextable/tests/testthat/test-errors.R | 3 flextable-0.9.6/flextable/tests/testthat/test-footers.R | 6 flextable-0.9.6/flextable/tests/testthat/test-footnote.R | 4 flextable-0.9.6/flextable/tests/testthat/test-gen_grob.R | 7 flextable-0.9.6/flextable/tests/testthat/test-headers.R | 5 flextable-0.9.6/flextable/tests/testthat/test-images.R | 107 +++- flextable-0.9.6/flextable/tests/testthat/test-keep_next.R |only flextable-0.9.6/flextable/tests/testthat/test-latex.R | 24 flextable-0.9.6/flextable/tests/testthat/test-link.R | 11 flextable-0.9.6/flextable/tests/testthat/test-md-captions.R | 54 -- flextable-0.9.6/flextable/tests/testthat/test-merge.R | 13 flextable-0.9.6/flextable/tests/testthat/test-misc.R | 2 flextable-0.9.6/flextable/tests/testthat/test-new-rows.R | 20 flextable-0.9.6/flextable/tests/testthat/test-padding.R | 5 flextable-0.9.6/flextable/tests/testthat/test-pptx-tables.R | 6 flextable-0.9.6/flextable/tests/testthat/test-proc-freq.R | 7 flextable-0.9.6/flextable/tests/testthat/test-rotations.R | 6 flextable-0.9.6/flextable/tests/testthat/test-styles.R | 85 +++ flextable-0.9.6/flextable/tests/testthat/test-text.R | 5 59 files changed, 889 insertions(+), 526 deletions(-)
Title: Visualization and Analysis of Statistical Measures of Confidence
Description: Enables: (1) plotting two-dimensional confidence regions, (2) coverage analysis
of confidence region simulations, (3) calculating confidence intervals and the associated
actual coverage for binomial proportions, (4) calculating the support values and the
probability mass function of the Kaplan-Meier product-limit estimator, and (5) plotting
the actual coverage function associated with a confidence interval for the survivor
function from a randomly right-censored data set. Each is given in greater detail next.
(1) Plots the two-dimensional confidence region for probability distribution parameters
(supported distribution suffixes: cauchy, gamma, invgauss, logis, llogis, lnorm, norm, unif,
weibull) corresponding to a user-given complete or right-censored dataset and level of
significance. The crplot() algorithm plots more points in areas of greater curvature to
ensure a smooth appearance throughout the confidence region boundary. An alternative
heuristic plots a specified number of poin [...truncated...]
Author: Christopher Weld [aut, cre] ,
Kexin Feng [aut],
Hayeon Park [aut],
Yuxin Qin [aut],
Xingyu Wang [aut],
Heather Sasinowska [aut],
Lawrence Leemis [aut],
Yuan Chang [ctb],
Brock Crook [ctb],
Chris Kuebler [ctb],
Andrew Loh [ctb],
Xin Zhang [ctb]
Maintainer: Christopher Weld <ceweld241@gmail.com>
Diff between conf versions 1.8.3 dated 2023-09-30 and 1.9.1 dated 2024-05-05
DESCRIPTION | 28 +++++++++++++++++++--------- MD5 | 42 ++++++++++++++++++++++++++---------------- NAMESPACE | 1 + R/conf-package.R | 23 +++++++++++++---------- R/coversim.R | 4 ++-- R/crplot.R | 4 ++-- R/km.coverage.R |only R/plot_Arcsine.R |only R/plot_ExpGreenwood.R |only R/plot_Greenwood.R |only R/plot_LogLog.R |only R/plot_Peto.R |only R/plot_all.R |only inst/CITATION | 3 ++- inst/WORDLIST |only inst/doc/coversim.html | 4 ++-- inst/doc/crplot.html | 4 ++-- inst/doc/crplot_advanced.html | 4 ++-- inst/doc/km.outcomes.html | 4 ++-- inst/doc/km.pmf.html | 4 ++-- inst/doc/km.support.html | 4 ++-- inst/doc/km.surv.html | 4 ++-- man/conf.Rd | 23 +++++++++++++---------- man/coversim.Rd | 4 ++-- man/crplot.Rd | 4 ++-- man/km.coverage.Rd |only tests |only 27 files changed, 96 insertions(+), 68 deletions(-)
Title: Subset Partitioning via Anticlustering
Description: The method of anticlustering partitions a pool of elements
into groups (i.e., anticlusters) with the goal of maximizing
between-group similarity or within-group heterogeneity. The
anticlustering approach thereby reverses the logic of cluster analysis
that strives for high within-group homogeneity and clear separation
between groups. Computationally, anticlustering is accomplished by
maximizing instead of minimizing a clustering objective function, such
as the intra-cluster variance (used in k-means clustering) or the sum
of pairwise distances within clusters. The main function
anticlustering() gives access to exact and heuristic anticlustering
methods described in Papenberg and Klau (2021;
<doi:10.1037/met0000301>), Brusco et al. (2020;
<doi:10.1111/bmsp.12186>), and Papenberg (2024;
<doi:10.1111/bmsp.12315>). The exact algorithms require that an
integer linear programming solver is installed, either the GNU linear
programming kit (<https://www.gnu.org/software/g [...truncated...]
Author: Martin Papenberg [aut, cre] ,
Meik Michalke [ctb] ,
Gunnar W. Klau [ths],
Juliane V. Nagel [ctb] ,
Martin Breuer [ctb] ,
Marie L. Schaper [ctb] ,
Max Diekhoff [ctb]
Maintainer: Martin Papenberg <martin.papenberg@hhu.de>
Diff between anticlust versions 0.8.3 dated 2024-04-24 and 0.8.5 dated 2024-05-05
anticlust-0.8.3/anticlust/tests/testthat |only anticlust-0.8.3/anticlust/tests/testthat.R |only anticlust-0.8.5/anticlust/DESCRIPTION | 8 anticlust-0.8.5/anticlust/MD5 | 95 + anticlust-0.8.5/anticlust/NAMESPACE | 1 anticlust-0.8.5/anticlust/R/Optimal_Dispersion.R | 21 anticlust-0.8.5/anticlust/R/exact-cluster-editing.R | 5 anticlust-0.8.5/anticlust/R/ilp-solve.R | 7 anticlust-0.8.5/anticlust/R/input-validation.R | 8 anticlust-0.8.5/anticlust/R/optimal_anticlustering.R |only anticlust-0.8.5/anticlust/R/wrapper-anticlustering.R | 4 anticlust-0.8.5/anticlust/R/wrapper-clustering.R | 25 anticlust-0.8.5/anticlust/inst/doc/Best_practices.html | 37 anticlust-0.8.5/anticlust/inst/doc/Categorical_vars.html | 484 +++++----- anticlust-0.8.5/anticlust/inst/doc/Speeding_up_anticlustering.html | 350 +++---- anticlust-0.8.5/anticlust/inst/doc/stimulus-selection.html | 330 +++--- anticlust-0.8.5/anticlust/inst/tinytest |only anticlust-0.8.5/anticlust/man/anticlustering.Rd | 4 anticlust-0.8.5/anticlust/man/balanced_clustering.Rd | 22 anticlust-0.8.5/anticlust/man/optimal_anticlustering.Rd |only anticlust-0.8.5/anticlust/man/optimal_dispersion.Rd | 7 anticlust-0.8.5/anticlust/tests/tinytest.R |only 22 files changed, 777 insertions(+), 631 deletions(-)
Title: Karl Broman's R Code
Description: Miscellaneous R functions, including functions related to
graphics (mostly for base graphics), permutation tests, running
mean/median, and general utilities.
Author: Karl W Broman [aut, cre] ,
Aimee Teo Broman [ctb]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between broman versions 0.80 dated 2022-07-08 and 0.82 dated 2024-05-05
DESCRIPTION | 10 +++++----- MD5 | 16 +++++++++------- NAMESPACE | 1 + NEWS.md | 7 +++++++ R/objectsizes.R | 2 +- R/time_axis.R |only data/numbers-cap.RData |binary data/numbers.RData |binary man/objectsizes.Rd | 2 +- man/time_axis.Rd |only 10 files changed, 24 insertions(+), 14 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word', 'RTF' and 'Microsoft
PowerPoint' documents from R. The package focuses on tabular and
graphical reporting from R; it also provides two functions that let
users get document content into data objects. A set of functions lets
add and remove images, tables and paragraphs of text in new or
existing documents. The package does not require any installation of
Microsoft products to be able to write Microsoft files.
Author: David Gohel [aut, cre],
Stefan Moog [aut],
ArData [cph],
Frank Hangler [ctb] ,
Liz Sander [ctb] ,
Anton Victorson [ctb] ,
Jon Calder [ctb] ,
John Harrold [ctb] ,
John Muschelli [ctb] ,
Bill Denney [ctb] ,
Nikolai Beck [ctb] ,
Greg Leleu [ctb] ,
Hongy [...truncated...]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.6.5 dated 2024-02-24 and 0.6.6 dated 2024-05-05
DESCRIPTION | 69 ++++++++----- MD5 | 48 +++++---- NAMESPACE | 1 NEWS.md | 21 ++++ R/docx_add.R | 65 +++++++++++++ R/docx_cursor.R | 5 - R/fortify_docx.R | 151 +++++++++++++++++------------- R/ooxml_block_objects.R | 4 R/ppt_ph_manipulate.R | 8 + R/ppt_ph_with_methods.R | 15 ++- R/pptx_slide_manip.R | 11 ++ R/rtf.R | 7 + man/body_comment.Rd |only man/cursor.Rd | 4 man/docx_summary.Rd | 13 +- man/ph_with.Rd | 5 - man/remove_slide.Rd | 5 - man/to_rtf.Rd | 6 - tests/testthat/docs_dir/knitr-utils.Rmd |only tests/testthat/test-alt-text.R |only tests/testthat/test-defunct.R |only tests/testthat/test-doc-summary.R | 10 ++ tests/testthat/test-docx-add.R | 96 +++++++------------ tests/testthat/test-knitr-utils.R |only tests/testthat/test-pptx-add.R | 159 ++++++++++++++++++++------------ tests/testthat/test-pptx-misc.R | 17 +++ tests/testthat/test-rtf-add.R | 125 +++++++++++++++++++++---- tests/testthat/test-to_rtf.R |only 28 files changed, 574 insertions(+), 271 deletions(-)
Title: Specify 'OpenMx' Models with a 'lavaan'-Style Syntax
Description: Provides a 'lavaan'-like syntax for 'OpenMx' models. The syntax supports
definition variables, bounds, and parameter transformations. This allows for
latent growth curve models with person-specific measurement occasions, moderated
nonlinear factor analysis and much more.
Author: Jannik H. Orzek [aut, cre, cph]
Maintainer: Jannik H. Orzek <jannik.orzek@mailbox.org>
Diff between mxsem versions 0.0.8 dated 2023-10-03 and 0.0.9 dated 2024-05-05
DESCRIPTION | 7 +++---- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/mxsem.R | 12 +----------- build/vignette.rds |binary inst/doc/Latent-Growth-Curve.html | 4 ++-- man/mxsem.Rd | 12 +----------- src/clean_syntax.cpp | 4 ++++ tests/testthat/test-clean-syntax.R | 2 ++ 9 files changed, 26 insertions(+), 36 deletions(-)
Title: Simultaneous Multi-Bias Adjustment
Description: Quantify the causal effect of a binary exposure on a binary
outcome with adjustment for multiple biases. The functions can
simultaneously adjust for any combination of uncontrolled confounding,
exposure/outcome misclassification, and selection bias.
The underlying method generalizes the concept of combining inverse
probability of selection weighting with predictive value weighting.
Simultaneous multi-bias analysis can be used to enhance the validity
and transparency of real-world evidence obtained from observational,
longitudinal studies. Based on the work from Paul Brendel, Aracelis Torres,
and Onyebuchi Arah (2023) <doi:10.1093/ije/dyad001>.
Author: Paul Brendel [aut, cre, cph]
Maintainer: Paul Brendel <pcbrendel@gmail.com>
Diff between multibias versions 1.4.0 dated 2024-01-27 and 1.5.0 dated 2024-05-05
DESCRIPTION | 6 MD5 | 70 ++++--- NAMESPACE | 2 NEWS.md | 13 + R/adjust_emc_sel.R | 2 R/adjust_multinom_uc_omc_sel.R |only R/adjust_uc_omc_sel.R |only R/adjust_uc_sel.R | 6 R/df_uc_omc_sel.R |only R/df_uc_omc_sel_source.R |only R/df_uc_sel.R | 4 R/df_uc_sel_source.R | 4 README.md | 3 data/df_uc_omc_sel.rda |only data/df_uc_omc_sel_source.rda |only data/df_uc_sel.rda |binary data/df_uc_sel_source.rda |binary man/adjust_emc_sel.Rd | 2 man/adjust_multinom_uc_omc_sel.Rd |only man/adjust_uc_omc_sel.Rd |only man/adjust_uc_sel.Rd | 6 man/df_uc_omc_sel.Rd |only man/df_uc_omc_sel_source.Rd |only man/df_uc_sel.Rd | 4 man/df_uc_sel_source.Rd | 4 tests/testthat/test-adjust_emc.R | 11 - tests/testthat/test-adjust_emc_omc.R | 10 - tests/testthat/test-adjust_emc_sel.R | 10 - tests/testthat/test-adjust_multinom_emc_omc.R | 14 - tests/testthat/test-adjust_multinom_uc_emc.R | 9 tests/testthat/test-adjust_multinom_uc_emc_sel.R | 14 - tests/testthat/test-adjust_multinom_uc_omc.R | 9 tests/testthat/test-adjust_multinom_uc_omc_sel.R |only tests/testthat/test-adjust_omc.R | 11 - tests/testthat/test-adjust_omc_sel.R | 6 tests/testthat/test-adjust_sel.R | 11 - tests/testthat/test-adjust_uc.R | 11 - tests/testthat/test-adjust_uc_emc.R | 6 tests/testthat/test-adjust_uc_emc_sel.R | 12 - tests/testthat/test-adjust_uc_omc.R | 6 tests/testthat/test-adjust_uc_omc_sel.R |only tests/testthat/test-adjust_uc_sel.R | 215 ++++++++++++++++++++++- 42 files changed, 345 insertions(+), 136 deletions(-)
Title: Convolute Probabilistic Distributions
Description: Convolute probabilistic distributions using the random generator
function of each distribution. A new random number generator function is created that
perform the mathematical operation on the individual random samples from the
random generator function of each distribution. See the documentation for examples.
Author: Aponte John [aut, cre]
Maintainer: Aponte John <john.j.aponte@gmail.com>
Diff between convdistr versions 1.6.1 dated 2024-01-24 and 1.6.2 dated 2024-05-05
DESCRIPTION | 9 -- MD5 | 17 ++-- NEWS.md | 4 R/plots.R | 4 README.md | 29 +++---- build/vignette.rds |binary inst/doc/sample_size.html | 64 +++++++-------- inst/doc/using-convdistr.html | 172 +++++++++++++++++++++--------------------- man/convdistr-package.Rd | 2 man/figures |only 10 files changed, 152 insertions(+), 149 deletions(-)
Title: Objects to Simulate Survival Times
Description: Generate objects that simulate survival times. Random values for the distributions are generated using the method described by Bender (2003) <https://epub.ub.uni-muenchen.de/id/eprint/1716> and Leemis (1987) in Operations Research, 35(6), 892–894.
Author: Aponte John [aut, cre, cph]
Maintainer: Aponte John <john.j.aponte@gmail.com>
Diff between survobj versions 3.0.0 dated 2024-01-29 and 3.1.0 dated 2024-05-05
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 18 ++++++++++-------- README.md | 7 +++++-- build/vignette.rds |binary inst/doc/example_distributions.html | 2 +- inst/doc/simulation_distributions.html | 8 ++++---- man/figures |only 8 files changed, 30 insertions(+), 24 deletions(-)