Title: Raven Hydrological Modelling Framework R Support and Analysis
Description: Utilities for processing input and output files associated with the Raven Hydrological Modelling Framework. Includes various plotting functions, model diagnostics, reading output files into extensible time series format, and support for writing Raven input files.
The 'RavenR' package is also archived at Chlumsky et al. (2020) <doi:10.5281/zenodo.4248183>.
The Raven Hydrologic Modelling Framework method can be referenced with Craig et al. (2020) <doi:10.1016/j.envsoft.2020.104728>.
Author: Robert Chlumsky [cre, aut] ,
James Craig [ctb, aut] ,
Leland Scantlebury [ctb, aut],
Simon Lin [ctb, aut],
Sarah Grass [ctb, aut],
Genevieve Brown [ctb, aut],
Rezgar Arabzadeh [ctb, aut]
Maintainer: Robert Chlumsky <rchlumsk@uwaterloo.ca>
Diff between RavenR versions 2.2.0 dated 2022-10-28 and 2.2.2 dated 2024-05-06
DESCRIPTION | 12 - MD5 | 152 ++++++++++++------------ NAMESPACE | 5 R/RavenR-package.R | 7 - R/rvn_apply_wyearly.R | 8 - R/rvn_budyko_plot.R | 2 R/rvn_csv_read.R |only R/rvn_custom_data.R | 2 R/rvn_custom_read.R | 2 R/rvn_download.R | 8 - R/rvn_forcing_data.R | 2 R/rvn_gen_obsweights.R | 2 R/rvn_hyd_dygraph.R | 2 R/rvn_hyd_extract.R | 6 R/rvn_hyd_plot.R | 3 R/rvn_hydrograph_data.R | 4 R/rvn_met_recordplot.R | 29 +++- R/rvn_monthly_vbias.R | 2 R/rvn_run.R | 2 R/rvn_rvh_blankSBdf.R | 2 R/rvn_rvh_query.R | 3 R/rvn_rvh_subbasin_visnetwork_plot.R | 6 R/rvn_rvh_write_subbasingroup.R | 27 +--- R/rvn_rvi_commandupdate.R |only R/rvn_rvi_connections.R | 2 R/rvn_rvi_process_diagrammer.R | 2 R/rvn_rvi_process_ggplot.R | 6 R/rvn_rvi_write_template.R | 150 +++++++++++++++++++++++ R/rvn_rvp_calib_template.R |only R/rvn_rvt_mappings_data.R | 2 R/rvn_rvt_read.R | 16 ++ R/rvn_rvt_write.R | 3 R/rvn_rvt_write_met.R | 23 --- R/rvn_utilities.R | 73 +++++++++-- R/rvn_watershed_data.R | 2 R/rvn_wyear_indices.R | 4 R/utils-pipe.R | 1 README.md | 63 ++++++++-- build/vignette.rds |binary inst/doc/Introduction_to_RavenR.R | 9 - inst/doc/Introduction_to_RavenR.Rmd | 21 +-- inst/doc/Introduction_to_RavenR.html | 194 +++++++++++++++---------------- inst/extdata/RavenAlgParams.dat | 12 + inst/extdata/RavenParameters.dat | 31 +++- inst/extdata/RavenProcessConnections.dat | 5 inst/extdata/ostIn_template.txt |only man/RavenR-package.Rd | 27 +++- man/figures/lifecycle-experimental.svg | 2 man/hhmmss2dec.Rd |only man/pipe.Rd | 6 man/rvn_apply_wyearly.Rd | 8 - man/rvn_csv_read.Rd |only man/rvn_custom_data.Rd | 2 man/rvn_custom_read.Rd | 2 man/rvn_dist_lonlat.Rd | 2 man/rvn_download.Rd | 4 man/rvn_forcing_data.Rd | 2 man/rvn_gen_obsweights.Rd | 2 man/rvn_hyd_dygraph.Rd | 2 man/rvn_hyd_extract.Rd | 4 man/rvn_hydrograph_data.Rd | 4 man/rvn_met_recordplot.Rd | 7 - man/rvn_num_days_month.Rd | 2 man/rvn_run.Rd | 2 man/rvn_rvh_query.Rd | 106 ++++++++-------- man/rvn_rvh_subbasin_visnetwork_plot.Rd | 6 man/rvn_rvh_summarize.Rd | 134 ++++++++++----------- man/rvn_rvh_write.Rd | 4 man/rvn_rvh_write_subbasingroup.Rd | 120 +++++++++---------- man/rvn_rvi_commandupdate.Rd |only man/rvn_rvi_connections.Rd | 2 man/rvn_rvi_process_diagrammer.Rd | 2 man/rvn_rvi_process_ggplot.Rd | 6 man/rvn_rvi_write_template.Rd | 4 man/rvn_rvp_calib_template.Rd |only man/rvn_rvt_mappings_data.Rd | 2 man/rvn_rvt_read.Rd | 1 man/rvn_rvt_write_met.Rd | 12 - man/rvn_watershed_data.Rd | 2 man/rvn_wyear_indices.Rd | 4 vignettes/Introduction_to_RavenR.Rmd | 21 +-- 81 files changed, 864 insertions(+), 547 deletions(-)
Title: Antarctic Spatial Data Manipulation
Description: Loads and creates spatial data, including layers and tools that are relevant
to the activities of the Commission for the Conservation of Antarctic Marine Living
Resources. Provides two categories of functions: load functions and create functions.
Load functions are used to import existing spatial layers from the online CCAMLR GIS
such as the ASD boundaries. Create functions are used to create layers from user data
such as polygons and grids.
Author: Stephane Thanassekos [aut, cre],
Keith Reid [aut],
Lucy Robinson [aut],
Michael D. Sumner [ctb],
Roger Bivand [ctb]
Maintainer: Stephane Thanassekos <stephane.thanassekos@ccamlr.org>
Diff between CCAMLRGIS versions 4.0.8 dated 2024-04-23 and 4.1.0 dated 2024-05-06
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- NEWS.md | 7 +++++++ R/CCAMLRGIS-package.R | 2 +- R/add_Cscale.R | 19 +++++++++++++------ R/add_Legend.R | 2 +- R/get_iso_polys.R | 8 +++++++- README.md | 4 ++++ build/vignette.rds |binary inst/doc/CCAMLRGIS.Rmd | 2 +- inst/doc/CCAMLRGIS.html | 6 +++--- man/CCAMLRGIS-package.Rd | 2 +- man/add_Cscale.Rd | 18 ++++++++++++++++++ man/get_iso_polys.Rd | 6 +++++- vignettes/CCAMLRGIS.Rmd | 2 +- 15 files changed, 81 insertions(+), 35 deletions(-)
Title: Helper Functions for Creating Tutorials
Description: Helper functions for creating, editing, and testing tutorials
created with the 'learnr' package. Provides a simple method for allowing
students to download their answers to tutorial questions. For examples
of its use, see the 'r4ds.tutorials' and 'primer.tutorials' packages.
Author: David Kane [aut, cre, cph]
Maintainer: David Kane <dave.kane@gmail.com>
Diff between tutorial.helpers versions 0.2.6 dated 2024-01-16 and 0.2.7 dated 2024-05-06
tutorial.helpers-0.2.6/tutorial.helpers/inst/tutorials/getting-started_es |only tutorial.helpers-0.2.7/tutorial.helpers/DESCRIPTION | 17 tutorial.helpers-0.2.7/tutorial.helpers/MD5 | 91 - tutorial.helpers-0.2.7/tutorial.helpers/NAMESPACE | 1 tutorial.helpers-0.2.7/tutorial.helpers/NEWS.md | 38 tutorial.helpers-0.2.7/tutorial.helpers/R/format_tutorial.R | 53 tutorial.helpers-0.2.7/tutorial.helpers/R/get_submissions_from_learnr_session.R | 10 tutorial.helpers-0.2.7/tutorial.helpers/R/knit_tutorials.R | 18 tutorial.helpers-0.2.7/tutorial.helpers/R/make_exercise.R | 15 tutorial.helpers-0.2.7/tutorial.helpers/R/set_binary_only_in_r_profile.R | 24 tutorial.helpers-0.2.7/tutorial.helpers/R/set_rstudio_settings.R | 18 tutorial.helpers-0.2.7/tutorial.helpers/R/submission_functions.R | 81 - tutorial.helpers-0.2.7/tutorial.helpers/R/write_answers.R | 6 tutorial.helpers-0.2.7/tutorial.helpers/README.md | 11 tutorial.helpers-0.2.7/tutorial.helpers/build/vignette.rds |binary tutorial.helpers-0.2.7/tutorial.helpers/inst/child_documents/download_answers.Rmd | 2 tutorial.helpers-0.2.7/tutorial.helpers/inst/child_documents/info_section.Rmd | 9 tutorial.helpers-0.2.7/tutorial.helpers/inst/doc/addins.R | 46 tutorial.helpers-0.2.7/tutorial.helpers/inst/doc/addins.Rmd | 4 tutorial.helpers-0.2.7/tutorial.helpers/inst/doc/addins.html | 10 tutorial.helpers-0.2.7/tutorial.helpers/inst/doc/books.Rmd | 10 tutorial.helpers-0.2.7/tutorial.helpers/inst/doc/books.html | 16 tutorial.helpers-0.2.7/tutorial.helpers/inst/doc/cloud.Rmd |only tutorial.helpers-0.2.7/tutorial.helpers/inst/doc/cloud.html |only tutorial.helpers-0.2.7/tutorial.helpers/inst/doc/downloads.html | 6 tutorial.helpers-0.2.7/tutorial.helpers/inst/doc/instructions.R | 8 tutorial.helpers-0.2.7/tutorial.helpers/inst/doc/instructions.Rmd | 94 - tutorial.helpers-0.2.7/tutorial.helpers/inst/doc/instructions.html | 80 - tutorial.helpers-0.2.7/tutorial.helpers/inst/doc/testing.html | 6 tutorial.helpers-0.2.7/tutorial.helpers/inst/tutorials/getting-started/tutorial.Rmd | 164 +- tutorial.helpers-0.2.7/tutorial.helpers/inst/tutorials/getting-started/tutorial.html | 584 ++++------ tutorial.helpers-0.2.7/tutorial.helpers/man/set_rstudio_settings.Rd | 14 tutorial.helpers-0.2.7/tutorial.helpers/man/submission_functions.Rd | 7 tutorial.helpers-0.2.7/tutorial.helpers/tests/testthat.R | 10 tutorial.helpers-0.2.7/tutorial.helpers/tests/testthat/fixtures/addin_test_inputs/format_input_1.Rmd | 19 tutorial.helpers-0.2.7/tutorial.helpers/tests/testthat/fixtures/addin_test_inputs/format_input_2.Rmd | 31 tutorial.helpers-0.2.7/tutorial.helpers/tests/testthat/fixtures/addin_test_inputs/format_input_3.Rmd |only tutorial.helpers-0.2.7/tutorial.helpers/tests/testthat/fixtures/addin_test_inputs/format_input_4.Rmd |only tutorial.helpers-0.2.7/tutorial.helpers/tests/testthat/fixtures/addin_test_inputs/format_input_5.Rmd |only tutorial.helpers-0.2.7/tutorial.helpers/tests/testthat/fixtures/addin_test_outputs/format_output_1.Rmd | 19 tutorial.helpers-0.2.7/tutorial.helpers/tests/testthat/fixtures/addin_test_outputs/format_output_2.Rmd | 31 tutorial.helpers-0.2.7/tutorial.helpers/tests/testthat/fixtures/addin_test_outputs/format_output_3.Rmd |only tutorial.helpers-0.2.7/tutorial.helpers/tests/testthat/fixtures/addin_test_outputs/format_output_4.Rmd |only tutorial.helpers-0.2.7/tutorial.helpers/tests/testthat/fixtures/addin_test_outputs/format_output_5.Rmd |only tutorial.helpers-0.2.7/tutorial.helpers/tests/testthat/test-format_tutorial.R |only tutorial.helpers-0.2.7/tutorial.helpers/vignettes/addins.Rmd | 4 tutorial.helpers-0.2.7/tutorial.helpers/vignettes/books.Rmd | 10 tutorial.helpers-0.2.7/tutorial.helpers/vignettes/cloud.Rmd |only tutorial.helpers-0.2.7/tutorial.helpers/vignettes/example-file.txt |only tutorial.helpers-0.2.7/tutorial.helpers/vignettes/example-hint-2.txt | 2 tutorial.helpers-0.2.7/tutorial.helpers/vignettes/example-written-1.txt | 2 tutorial.helpers-0.2.7/tutorial.helpers/vignettes/instructions.Rmd | 94 - 52 files changed, 941 insertions(+), 724 deletions(-)
More information about tutorial.helpers at CRAN
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Title: Estimate Survival from Common Data Model Cohorts
Description: Estimate survival using data mapped to the Observational Medical Outcomes Partnership common data model. Survival can be estimated based on user-defined study cohorts.
Author: Edward Burn [aut, cre] ,
Kim Lopez [aut] ,
Marti Catala [ctb] ,
Xintong Li [ctb] ,
Danielle Newby [ctb]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between CohortSurvival versions 0.4.0 dated 2024-04-02 and 0.5.0 dated 2024-05-06
CohortSurvival-0.4.0/CohortSurvival/man/splitNameLevel.Rd |only CohortSurvival-0.4.0/CohortSurvival/man/uniteNameLevel.Rd |only CohortSurvival-0.5.0/CohortSurvival/DESCRIPTION | 17 CohortSurvival-0.5.0/CohortSurvival/MD5 | 69 CohortSurvival-0.5.0/CohortSurvival/NAMESPACE | 3 CohortSurvival-0.5.0/CohortSurvival/R/addCohortSurvival.R | 664 ++++-- CohortSurvival-0.5.0/CohortSurvival/R/asSurvivalResult.R | 11 CohortSurvival-0.5.0/CohortSurvival/R/deathDiagnostics.R |only CohortSurvival-0.5.0/CohortSurvival/R/estimateSurvival.R | 259 +- CohortSurvival-0.5.0/CohortSurvival/R/generateDeathCohort.R | 21 CohortSurvival-0.5.0/CohortSurvival/R/inputValidation.R | 12 CohortSurvival-0.5.0/CohortSurvival/R/plotSurvival.R | 16 CohortSurvival-0.5.0/CohortSurvival/R/tableSurvival.R | 267 +- CohortSurvival-0.5.0/CohortSurvival/R/utils.R | 302 --- CohortSurvival-0.5.0/CohortSurvival/README.md | 123 - CohortSurvival-0.5.0/CohortSurvival/build/vignette.rds |binary CohortSurvival-0.5.0/CohortSurvival/inst/doc/a01_Single_event_of_interest.R | 6 CohortSurvival-0.5.0/CohortSurvival/inst/doc/a01_Single_event_of_interest.Rmd | 7 CohortSurvival-0.5.0/CohortSurvival/inst/doc/a01_Single_event_of_interest.html | 997 +++++++++- CohortSurvival-0.5.0/CohortSurvival/inst/doc/a02_Competing_risk_survival.R | 10 CohortSurvival-0.5.0/CohortSurvival/inst/doc/a02_Competing_risk_survival.Rmd | 12 CohortSurvival-0.5.0/CohortSurvival/inst/doc/a02_Competing_risk_survival.html | 941 +++++++++ CohortSurvival-0.5.0/CohortSurvival/inst/doc/a03_Further_survival_analyses.R |only CohortSurvival-0.5.0/CohortSurvival/inst/doc/a03_Further_survival_analyses.Rmd |only CohortSurvival-0.5.0/CohortSurvival/inst/doc/a03_Further_survival_analyses.html |only CohortSurvival-0.5.0/CohortSurvival/man/addCompetingRiskCohortSurvival.Rd |only CohortSurvival-0.5.0/CohortSurvival/man/estimateCompetingRiskSurvival.Rd | 4 CohortSurvival-0.5.0/CohortSurvival/man/estimateSingleEventSurvival.Rd | 4 CohortSurvival-0.5.0/CohortSurvival/man/figures/README-unnamed-chunk-10-1.png |binary CohortSurvival-0.5.0/CohortSurvival/man/figures/README-unnamed-chunk-11-1.png |binary CohortSurvival-0.5.0/CohortSurvival/man/figures/README-unnamed-chunk-7-1.png |only CohortSurvival-0.5.0/CohortSurvival/man/generateDeathCohortSet.Rd | 16 CohortSurvival-0.5.0/CohortSurvival/man/optionsTableSurvival.Rd |only CohortSurvival-0.5.0/CohortSurvival/man/tableSurvival.Rd | 83 CohortSurvival-0.5.0/CohortSurvival/tests/testthat/test-deathDiagnostics.R |only CohortSurvival-0.5.0/CohortSurvival/tests/testthat/test-estimateSurvival.R | 99 CohortSurvival-0.5.0/CohortSurvival/tests/testthat/test-generateDeathCohort.R | 9 CohortSurvival-0.5.0/CohortSurvival/tests/testthat/test-tableSurvival.R | 167 + CohortSurvival-0.5.0/CohortSurvival/vignettes/a01_Single_event_of_interest.Rmd | 7 CohortSurvival-0.5.0/CohortSurvival/vignettes/a02_Competing_risk_survival.Rmd | 12 CohortSurvival-0.5.0/CohortSurvival/vignettes/a03_Further_survival_analyses.Rmd |only 41 files changed, 3046 insertions(+), 1092 deletions(-)
More information about CohortSurvival at CRAN
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Title: Compute Standardized Mean Differences
Description: Computes standardized mean differences and confidence intervals for
multiple data types based on Yang, D., & Dalton, J. E. (2012)
<https://support.sas.com/resources/papers/proceedings12/335-2012.pdf>.
Author: Bradley Saul [aut, cre],
Alex Breskin [ctb],
Catie Wiener [ctb],
Matt Phelan [ctb],
Daniel Sjoberg [ctb],
Nuvan Rathnayaka [ctb]
Maintainer: Bradley Saul <bradleysaul@fastmail.com>
Diff between smd versions 0.6.7 dated 2024-03-28 and 0.7.0 dated 2024-05-06
DESCRIPTION | 17 ++- MD5 | 33 +++---- R/mean_var.R | 171 +++++++++++++++++++++------------------ R/smd.R | 138 ++++++++++++++++--------------- R/utilities.R | 13 +- build/partial.rdb |only inst/doc/smd_usage.R | 3 inst/doc/smd_usage.Rmd | 5 - inst/doc/smd_usage.html | 13 +- man/compute_smd_parts.Rd | 4 man/n_mean_var.Rd | 24 ++--- man/smd.Rd | 33 +++++-- tests/testthat/helper_mean_var.R | 2 tests/testthat/helper_smd.R | 46 ++++++---- tests/testthat/test_mean_var.R | 68 +++++++++++++-- tests/testthat/test_smd.R | 115 ++++++++++++++++++++------ tests/testthat/test_utilities.R | 2 vignettes/smd_usage.Rmd | 5 - 18 files changed, 435 insertions(+), 257 deletions(-)
Title: 'Facebook Marketing API' Social Watcher
Description: Facilitates querying data from the ‘Facebook Marketing API', particularly for social science research <https://developers.facebook.com/docs/marketing-apis/>. Data from the 'Facebook Marketing API' has been used for a variety of social science applications, such as for poverty estimation (Marty and Duhaut (2024) <doi:10.1038/s41598-023-49564-6>), disease surveillance (Araujo et al. (2017) <doi:10.48550/arXiv.1705.04045>), and measuring migration (Alexander, Polimis, and Zagheni (2020) <doi:10.1007/s11113-020-09599-3>). The package facilitates querying the number of Facebook daily/monthly active users for multiple location types (e.g., from around a specific coordinate to an administrative region) and for a number of attribute types (e.g., interests, behaviors, education level, etc). The package supports making complex queries within one API call and making multiple API calls across different locations and/or parameters.
Author: Robert Marty [aut, cre]
Maintainer: Robert Marty <rmarty@worldbank.org>
Diff between rsocialwatcher versions 0.1.0 dated 2024-05-02 and 0.1.1 dated 2024-05-06
DESCRIPTION | 6 +- MD5 | 6 +- R/query_fb_marketing_api.R | 77 +++++++++++++++++++------- man/query_fb_marketing_api.Rd | 120 +++++++++++++++++++++--------------------- 4 files changed, 122 insertions(+), 87 deletions(-)
More information about rsocialwatcher at CRAN
Permanent link
Title: A Portal for Global Governance Data
Description: This is the core package for the many packages universe.
It includes functions to help researchers work with and contribute to
event datasets on global governance.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Bernhard Bieri [ctb] ,
Esther Peev [ctb] ,
Jael Tan [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manydata versions 0.9.2 dated 2024-02-22 and 0.9.3 dated 2024-05-06
DESCRIPTION | 13 +++-- MD5 | 20 ++++----- NEWS.md | 8 +++ R/call.R | 85 +++++++++++++++++++++++---------------- R/compare.R | 38 +++++++++-------- data/emperors.rda |binary tests/testthat/test_UNRV.R | 2 tests/testthat/test_britannica.R | 2 tests/testthat/test_call.R | 2 tests/testthat/test_compare.R | 22 ++++++---- tests/testthat/test_wikipedia.R | 2 11 files changed, 119 insertions(+), 75 deletions(-)
Title: Utility Functions for Statistical Analysis Report Generation and
Monte Carlo Studies
Description: Helper functions for creating formatted summary of regression models, writing publication-ready tables to latex files, and running Monte Carlo experiments.
Author: Youyi Fong [cre],
Krisztian Sebestyen [aut],
Han Sunwoo [aut],
Jason Becker [ctb],
Bendix Carstensen [ctb],
Daryl Morris [ctb],
Josh Pasek [ctb],
Dennis Chao [ctb],
Andri Signorell [ctb],
Sue Li [ctb],
Jonathan Bartlett [ctb],
Christophe Dutang [ctb]
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between kyotil versions 2024.1-30 dated 2024-01-29 and 2024.5-8 dated 2024-05-06
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NAMESPACE | 4 ++-- R/base.R | 24 +++++++++++++----------- R/plotting.R | 10 +++++++--- R/regression.model.functions.R | 4 ++-- inst/doc/kyotil-vignette.pdf |binary man/base.Rd | 11 ----------- src/matrix.c | 4 ++-- 9 files changed, 37 insertions(+), 42 deletions(-)
Title: Comprehensive and Easy to Use Quality Control of GWAS Results
Description: When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.
Author: Alireza Ani [aut, cre],
Peter J. van der Most [aut],
Ahmad Vaez [aut],
Ilja M. Nolte [aut]
Maintainer: Alireza Ani <a.ani@umcg.nl>
Diff between GWASinspector versions 1.6.5 dated 2023-09-27 and 1.7.1 dated 2024-05-06
DESCRIPTION | 10 +++--- MD5 | 60 ++++++++++++++++++------------------- R/QQPlotFunction.R | 2 - R/aaa.R | 2 - R/checkConfigFile.R | 71 +++++++++++++++++++------------------------- R/class_definition.R | 2 + R/demo_inspector.R | 2 - R/drawPlots.R | 3 + R/effectsizePlotFunction.R | 2 - R/histPlotFunction.R | 2 - R/mafPlotFunction.R | 2 - R/manh_plot.R | 11 ++++-- R/manhattanPlotFunction.R | 65 ++++++++++------------------------------ R/multiStudyFunctions.R | 2 - R/multiStudyPlots.R | 6 +-- R/pValueCorPlot.R | 4 +- R/processInputFile.R | 8 ++-- R/reportRelatedFunctions.R | 4 +- R/run_inspector.R | 7 +--- R/setup_inspector.R | 1 R/studyFunctions.R | 20 ++++++------ R/system_check.R | 2 - R/terminationFunctions.R | 2 - R/validate.R | 3 + R/variantMatching.R | 6 +++ build/vignette.rds |binary inst/doc/GWASinspector.R | 2 - inst/doc/GWASinspector.html | 4 +- inst/extdata/config.ini | 16 +++++++-- man/GWASinspector.Rd | 18 +++++++++++ man/manhattan_plot.Rd | 5 ++- 31 files changed, 175 insertions(+), 169 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://activinsights.com/>, binary (.gt3x) and .csv-export data from 'Actigraph' <https://theactigraph.com> devices, and binary (.cwa) and .csv-export data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre],
Jairo H Migueles [aut] ,
Severine Sabia [ctb],
Matthew R Patterson [ctb],
Zhou Fang [ctb],
Joe Heywood [ctb],
Joan Capdevila Pujol [ctb],
Lena Kushleyeva [ctb],
Mathilde Chen [ctb],
Manasa Yerramalla [ctb],
Patrick Bos [...truncated...]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIR versions 3.0-9 dated 2024-03-19 and 3.1-0 dated 2024-05-06
GGIR-3.0-9/GGIR/inst/doc/ExternalFunction.pdf |only GGIR-3.1-0/GGIR/DESCRIPTION | 8 GGIR-3.1-0/GGIR/MD5 | 145 ++++++---- GGIR-3.1-0/GGIR/NEWS.md | 32 ++ GGIR-3.1-0/GGIR/R/GGIR.R | 2 GGIR-3.1-0/GGIR/R/HASPT.R | 22 - GGIR-3.1-0/GGIR/R/create_test_acc_csv.R | 4 GGIR-3.1-0/GGIR/R/extract_params.R | 2 GGIR-3.1-0/GGIR/R/g.analyse.R | 2 GGIR-3.1-0/GGIR/R/g.analyse.perday.R | 2 GGIR-3.1-0/GGIR/R/g.analyse.perfile.R | 6 GGIR-3.1-0/GGIR/R/g.conv.actlog.R | 2 GGIR-3.1-0/GGIR/R/g.fragmentation.R | 4 GGIR-3.1-0/GGIR/R/g.getmeta.R | 4 GGIR-3.1-0/GGIR/R/g.inspectfile.R | 23 - GGIR-3.1-0/GGIR/R/g.part1.R | 3 GGIR-3.1-0/GGIR/R/g.part2.R | 4 GGIR-3.1-0/GGIR/R/g.part3.R | 3 GGIR-3.1-0/GGIR/R/g.part4.R | 13 GGIR-3.1-0/GGIR/R/g.part5.R | 10 GGIR-3.1-0/GGIR/R/g.part5.addsib.R | 4 GGIR-3.1-0/GGIR/R/g.part5.definedays.R | 31 +- GGIR-3.1-0/GGIR/R/g.part5.wakesleepwindows.R | 3 GGIR-3.1-0/GGIR/R/g.part6.R | 14 GGIR-3.1-0/GGIR/R/g.report.part2.R | 2 GGIR-3.1-0/GGIR/R/g.report.part4.R | 33 +- GGIR-3.1-0/GGIR/R/g.report.part5.R | 16 - GGIR-3.1-0/GGIR/R/g.report.part6.R | 7 GGIR-3.1-0/GGIR/R/g.sib.det.R | 4 GGIR-3.1-0/GGIR/R/load_params.R | 4 GGIR-3.1-0/GGIR/R/read.myacc.csv.R | 6 GGIR-3.1-0/GGIR/README.md | 2 GGIR-3.1-0/GGIR/build/vignette.rds |binary GGIR-3.1-0/GGIR/inst/doc/ExternalFunction.Rmd | 11 GGIR-3.1-0/GGIR/inst/doc/ExternalFunction.html |only GGIR-3.1-0/GGIR/inst/doc/GGIRParameters.Rmd | 2 GGIR-3.1-0/GGIR/inst/doc/GGIRParameters.html | 87 +++--- GGIR-3.1-0/GGIR/inst/doc/chapter0_GetStarted.R |only GGIR-3.1-0/GGIR/inst/doc/chapter0_GetStarted.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter0_GetStarted.html |only GGIR-3.1-0/GGIR/inst/doc/chapter0_Installation.R |only GGIR-3.1-0/GGIR/inst/doc/chapter0_Installation.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter0_Installation.html |only GGIR-3.1-0/GGIR/inst/doc/chapter0_Support.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter0_Support.html |only GGIR-3.1-0/GGIR/inst/doc/chapter0_contributing.R |only GGIR-3.1-0/GGIR/inst/doc/chapter0_contributing.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter0_contributing.html |only GGIR-3.1-0/GGIR/inst/doc/chapter10_CircadianRhythms.R |only GGIR-3.1-0/GGIR/inst/doc/chapter10_CircadianRhythms.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter10_CircadianRhythms.html |only GGIR-3.1-0/GGIR/inst/doc/chapter1_WhatIsGGIR.R |only GGIR-3.1-0/GGIR/inst/doc/chapter1_WhatIsGGIR.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter1_WhatIsGGIR.html |only GGIR-3.1-0/GGIR/inst/doc/chapter2_Pipeline.R |only GGIR-3.1-0/GGIR/inst/doc/chapter2_Pipeline.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter2_Pipeline.html |only GGIR-3.1-0/GGIR/inst/doc/chapter3_QualityAssessment.R |only GGIR-3.1-0/GGIR/inst/doc/chapter3_QualityAssessment.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter3_QualityAssessment.html |only GGIR-3.1-0/GGIR/inst/doc/chapter4_AccMetrics.R |only GGIR-3.1-0/GGIR/inst/doc/chapter4_AccMetrics.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter4_AccMetrics.html |only GGIR-3.1-0/GGIR/inst/doc/chapter5_StudyProtocol.R |only GGIR-3.1-0/GGIR/inst/doc/chapter5_StudyProtocol.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter5_StudyProtocol.html |only GGIR-3.1-0/GGIR/inst/doc/chapter6_DataImputation.R |only GGIR-3.1-0/GGIR/inst/doc/chapter6_DataImputation.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter6_DataImputation.html |only GGIR-3.1-0/GGIR/inst/doc/chapter7_DescribingDataWithoutKnowingSleep.R |only GGIR-3.1-0/GGIR/inst/doc/chapter7_DescribingDataWithoutKnowingSleep.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter7_DescribingDataWithoutKnowingSleep.html |only GGIR-3.1-0/GGIR/inst/doc/chapter8_24hTimeUseAnalysis.R |only GGIR-3.1-0/GGIR/inst/doc/chapter8_24hTimeUseAnalysis.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter8_24hTimeUseAnalysis.html |only GGIR-3.1-0/GGIR/inst/doc/chapter9_PhysicalBehavioursAnalysis.R |only GGIR-3.1-0/GGIR/inst/doc/chapter9_PhysicalBehavioursAnalysis.Rmd |only GGIR-3.1-0/GGIR/inst/doc/chapter9_PhysicalBehavioursAnalysis.html |only GGIR-3.1-0/GGIR/man/GGIR-package.Rd | 4 GGIR-3.1-0/GGIR/man/GGIR.Rd | 95 +++--- GGIR-3.1-0/GGIR/tests/testthat/test_chainof5parts.R | 14 GGIR-3.1-0/GGIR/tests/testthat/test_fragmentation.R | 3 GGIR-3.1-0/GGIR/tests/testthat/test_part5_qwindow.R | 34 ++ GGIR-3.1-0/GGIR/tests/testthat/test_part6.R | 4 GGIR-3.1-0/GGIR/tests/testthat/test_read.myacc.csv.R | 22 + GGIR-3.1-0/GGIR/tests/testthat/test_recordingEndSleepHour.R | 4 GGIR-3.1-0/GGIR/vignettes/ExternalFunction.Rmd | 11 GGIR-3.1-0/GGIR/vignettes/GGIRParameters.Rmd | 2 GGIR-3.1-0/GGIR/vignettes/chapter0_GetStarted.Rmd |only GGIR-3.1-0/GGIR/vignettes/chapter0_Installation.Rmd |only GGIR-3.1-0/GGIR/vignettes/chapter0_Support.Rmd |only GGIR-3.1-0/GGIR/vignettes/chapter0_contributing.Rmd |only GGIR-3.1-0/GGIR/vignettes/chapter10_CircadianRhythms.Rmd |only GGIR-3.1-0/GGIR/vignettes/chapter1_WhatIsGGIR.Rmd |only GGIR-3.1-0/GGIR/vignettes/chapter2_Pipeline.Rmd |only GGIR-3.1-0/GGIR/vignettes/chapter3_QualityAssessment.Rmd |only GGIR-3.1-0/GGIR/vignettes/chapter4_AccMetrics.Rmd |only GGIR-3.1-0/GGIR/vignettes/chapter5_StudyProtocol.Rmd |only GGIR-3.1-0/GGIR/vignettes/chapter6_DataImputation.Rmd |only GGIR-3.1-0/GGIR/vignettes/chapter7_DescribingDataWithoutKnowingSleep.Rmd |only GGIR-3.1-0/GGIR/vignettes/chapter8_24hTimeUseAnalysis.Rmd |only GGIR-3.1-0/GGIR/vignettes/chapter9_PhysicalBehavioursAnalysis.Rmd |only 102 files changed, 482 insertions(+), 228 deletions(-)
Title: Inspect, Read, Edit and Run 'APSIM' "Next Generation" and
'APSIM' Classic
Description: The functions in this package inspect, read, edit and run files for 'APSIM' "Next Generation" ('JSON')
and 'APSIM' "Classic" ('XML'). The files with an 'apsim' extension correspond to
'APSIM' Classic (7.x) - Windows only - and the ones with an 'apsimx' extension correspond to 'APSIM' "Next Generation".
For more information about 'APSIM' see (<https://www.apsim.info/>) and for 'APSIM'
next generation (<https://apsimnextgeneration.netlify.app/>).
Author: Fernando Miguez [aut, cre]
Maintainer: Fernando Miguez <femiguez@iastate.edu>
Diff between apsimx versions 2.6.2 dated 2024-01-29 and 2.7.7 dated 2024-05-06
apsimx-2.6.2/apsimx/tests/Wheat-edited-gui.apsimx |only apsimx-2.6.2/apsimx/tests/Wheat-edited.apsimx |only apsimx-2.6.2/apsimx/tests/Wheat.apsimx |only apsimx-2.6.2/apsimx/tests/Wheat.json |only apsimx-2.7.7/apsimx/DESCRIPTION | 17 apsimx-2.7.7/apsimx/MD5 | 139 +- apsimx-2.7.7/apsimx/NAMESPACE | 5 apsimx-2.7.7/apsimx/NEWS.md | 20 apsimx-2.7.7/apsimx/R/apsim_internal.R | 49 - apsimx-2.7.7/apsimx/R/apsim_met.R | 287 +++++- apsimx-2.7.7/apsimx/R/apsim_version.R | 4 apsimx-2.7.7/apsimx/R/apsimx.R | 4 apsimx-2.7.7/apsimx/R/apsimx_soil_profile.R | 89 + apsimx-2.7.7/apsimx/R/compare_apsim.R | 18 apsimx-2.7.7/apsimx/R/compare_apsim_met.R | 44 apsimx-2.7.7/apsimx/R/edit_apsim_replace_soil_profile.R | 33 apsimx-2.7.7/apsimx/R/edit_apsimx_json.R | 171 +++ apsimx-2.7.7/apsimx/R/edit_apsimx_replace_soil_profile.R | 2 apsimx-2.7.7/apsimx/R/edit_apsimx_replacement.R | 10 apsimx-2.7.7/apsimx/R/extract_data_apsimx.R |only apsimx-2.7.7/apsimx/R/get_isric_soil_profile.R | 123 +- apsimx-2.7.7/apsimx/R/get_ssurgo_soil_profile.R | 11 apsimx-2.7.7/apsimx/R/get_worldmodeler_soil_profile.R | 171 ++- apsimx-2.7.7/apsimx/R/inspect_apsimx_json.R | 698 +++++++++++++- apsimx-2.7.7/apsimx/R/optim_apsimx.R | 352 ++++--- apsimx-2.7.7/apsimx/R/sens_apsimx.R | 712 ++++++--------- apsimx-2.7.7/apsimx/R/ssurgo2sp.R | 19 apsimx-2.7.7/apsimx/R/wget_apsimx_json.R | 99 +- apsimx-2.7.7/apsimx/README.md | 44 apsimx-2.7.7/apsimx/inst/doc/apsimx-scripts.R | 2 apsimx-2.7.7/apsimx/inst/doc/apsimx-scripts.Rmd | 22 apsimx-2.7.7/apsimx/inst/doc/apsimx-scripts.html | 29 apsimx-2.7.7/apsimx/inst/doc/apsimx.Rmd | 20 apsimx-2.7.7/apsimx/inst/doc/apsimx.html | 56 - apsimx-2.7.7/apsimx/inst/doc/optim-apsim.Rmd | 22 apsimx-2.7.7/apsimx/inst/doc/optim-apsim.html | 44 apsimx-2.7.7/apsimx/inst/doc/sensitivity-apsim.Rmd | 12 apsimx-2.7.7/apsimx/inst/doc/sensitivity-apsim.html | 29 apsimx-2.7.7/apsimx/inst/extdata/Wheat-opt-ex.db |binary apsimx-2.7.7/apsimx/man/amp_apsim_met.Rd | 6 apsimx-2.7.7/apsimx/man/apsimx_soil_profile.Rd | 5 apsimx-2.7.7/apsimx/man/compare_apsim.Rd | 15 apsimx-2.7.7/apsimx/man/edit_apsimx.Rd | 10 apsimx-2.7.7/apsimx/man/extract_data_apsimx.Rd |only apsimx-2.7.7/apsimx/man/extract_values_apsimx.Rd | 2 apsimx-2.7.7/apsimx/man/get_apsimx_json.Rd | 2 apsimx-2.7.7/apsimx/man/get_isric_soil_profile.Rd | 25 apsimx-2.7.7/apsimx/man/get_ssurgo_soil_profile.Rd | 6 apsimx-2.7.7/apsimx/man/get_worldmodeler_apsim_met.Rd |only apsimx-2.7.7/apsimx/man/get_worldmodeler_soil_profile.Rd | 40 apsimx-2.7.7/apsimx/man/grep_json_list.Rd | 10 apsimx-2.7.7/apsimx/man/insert_replacement_node.Rd | 27 apsimx-2.7.7/apsimx/man/inspect_apsimx.Rd | 37 apsimx-2.7.7/apsimx/man/inspect_apsimx_json.Rd | 4 apsimx-2.7.7/apsimx/man/optim_apsimx.Rd | 9 apsimx-2.7.7/apsimx/man/plot.met.Rd | 7 apsimx-2.7.7/apsimx/man/sens_apsimx.Rd | 24 apsimx-2.7.7/apsimx/man/summary.met.Rd | 6 apsimx-2.7.7/apsimx/man/tav_apsim_met.Rd |only apsimx-2.7.7/apsimx/tests/test_apsim_met.R | 46 apsimx-2.7.7/apsimx/tests/test_apsim_soils.R | 1 apsimx-2.7.7/apsimx/tests/test_cores_sens_apsimx.R | 137 +- apsimx-2.7.7/apsimx/tests/test_edit.R | 24 apsimx-2.7.7/apsimx/tests/test_extract_data.R |only apsimx-2.7.7/apsimx/tests/test_get_isric_soil_profile.R | 24 apsimx-2.7.7/apsimx/tests/test_insert_replacement_node.R | 34 apsimx-2.7.7/apsimx/tests/test_inspect.R | 121 ++ apsimx-2.7.7/apsimx/tests/test_optim_apsimx.R | 130 ++ apsimx-2.7.7/apsimx/tests/test_optim_apsimx_win.R |only apsimx-2.7.7/apsimx/tests/test_sens_apsimx.R | 103 +- apsimx-2.7.7/apsimx/tests/test_soil_properties.R | 9 apsimx-2.7.7/apsimx/tests/test_worldmodeler.R |only apsimx-2.7.7/apsimx/vignettes/apsimx-scripts.Rmd | 22 apsimx-2.7.7/apsimx/vignettes/apsimx.Rmd | 20 apsimx-2.7.7/apsimx/vignettes/optim-apsim.Rmd | 22 apsimx-2.7.7/apsimx/vignettes/sensitivity-apsim.Rmd | 12 76 files changed, 3028 insertions(+), 1269 deletions(-)
Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] ,
Posit Software, PBC [cph, fnd],
Christophe Dervieux [ctb] ,
Devon Ryan [ctb] ,
Ethan Heinzen [ctb],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.50 dated 2024-03-16 and 0.51 dated 2024-05-06
DESCRIPTION | 6 +++--- LICENSE | 2 +- MD5 | 6 +++--- R/tlmgr.R | 21 ++++++++++++++++----- 4 files changed, 23 insertions(+), 12 deletions(-)
Title: Visualizing Generalized Canonical Discriminant and Canonical
Correlation Analysis
Description: Functions for computing and visualizing
generalized canonical discriminant analyses and canonical correlation analysis
for a multivariate linear model.
Traditional canonical discriminant analysis is restricted to a one-way 'MANOVA'
design and is equivalent to canonical correlation analysis between a set of quantitative
response variables and a set of dummy variables coded from the factor variable.
The 'candisc' package generalizes this to higher-way 'MANOVA' designs
for all factors in a multivariate linear model,
computing canonical scores and vectors for each term. The graphic functions provide low-rank (1D, 2D, 3D)
visualizations of terms in an 'mlm' via the 'plot.candisc' and 'heplot.candisc' methods. Related plots are
now provided for canonical correlation analysis when all predictors are quantitative.
Author: Michael Friendly [aut, cre] ,
John Fox [aut]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between candisc versions 0.8-6 dated 2021-10-07 and 0.9.0 dated 2024-05-06
candisc-0.8-6/candisc/NEWS |only candisc-0.9.0/candisc/DESCRIPTION | 34 - candisc-0.9.0/candisc/MD5 | 100 +-- candisc-0.9.0/candisc/NAMESPACE | 131 ++-- candisc-0.9.0/candisc/NEWS.md |only candisc-0.9.0/candisc/R/Wilks.cancor.R | 37 + candisc-0.9.0/candisc/R/can_lm.R | 53 + candisc-0.9.0/candisc/R/cancor.R | 707 ++++++++++++++++-------- candisc-0.9.0/candisc/R/candisc-package.R |only candisc-0.9.0/candisc/R/candisc.R | 512 ++++++++++++----- candisc-0.9.0/candisc/R/candiscList.R | 62 ++ candisc-0.9.0/candisc/R/dataIndex.R | 28 candisc-0.9.0/candisc/R/heplot.cancor.R | 123 ++++ candisc-0.9.0/candisc/R/heplot.candisc.R | 173 +++++ candisc-0.9.0/candisc/R/heplot3d.cancor.R | 1 candisc-0.9.0/candisc/R/plot.cancor.R | 101 +++ candisc-0.9.0/candisc/R/plot.candisc.R | 2 candisc-0.9.0/candisc/R/redundancy.R | 72 ++ candisc-0.9.0/candisc/R/varOrder.R | 74 ++ candisc-0.9.0/candisc/R/vecscale.R | 38 + candisc-0.9.0/candisc/R/vectors.R | 50 + candisc-0.9.0/candisc/build/partial.rdb |binary candisc-0.9.0/candisc/build/vignette.rds |binary candisc-0.9.0/candisc/data/Grass.rda |binary candisc-0.9.0/candisc/data/HSB.rda |binary candisc-0.9.0/candisc/data/Wine.RData |binary candisc-0.9.0/candisc/data/Wolves.rda |binary candisc-0.9.0/candisc/inst/CITATION | 47 - candisc-0.9.0/candisc/inst/WORDLIST | 25 candisc-0.9.0/candisc/inst/doc/diabetes.R | 5 candisc-0.9.0/candisc/inst/doc/diabetes.Rmd | 5 candisc-0.9.0/candisc/inst/doc/diabetes.html | 637 +++++++++++++-------- candisc-0.9.0/candisc/man/Grass.Rd | 71 +- candisc-0.9.0/candisc/man/HSB.Rd | 89 +-- candisc-0.9.0/candisc/man/Wilks.Rd | 74 +- candisc-0.9.0/candisc/man/Wine.Rd | 81 +- candisc-0.9.0/candisc/man/Wolves.Rd | 81 +- candisc-0.9.0/candisc/man/can_lm.Rd | 62 -- candisc-0.9.0/candisc/man/cancor.Rd | 441 ++++++++------ candisc-0.9.0/candisc/man/candisc-package.Rd | 157 ++--- candisc-0.9.0/candisc/man/candisc.Rd | 370 +++++++----- candisc-0.9.0/candisc/man/candiscList.Rd | 93 ++- candisc-0.9.0/candisc/man/dataIndex.Rd | 33 - candisc-0.9.0/candisc/man/heplot.cancor.Rd | 238 ++++---- candisc-0.9.0/candisc/man/heplot.candisc.Rd | 189 +++--- candisc-0.9.0/candisc/man/heplot.candiscList.Rd | 90 +-- candisc-0.9.0/candisc/man/plot.cancor.Rd | 237 +++----- candisc-0.9.0/candisc/man/predictor.names.Rd |only candisc-0.9.0/candisc/man/redundancy.Rd | 109 +-- candisc-0.9.0/candisc/man/varOrder.Rd | 180 +++--- candisc-0.9.0/candisc/man/vecscale.Rd | 73 +- candisc-0.9.0/candisc/man/vectors.Rd | 134 +--- candisc-0.9.0/candisc/vignettes/diabetes.Rmd | 5 53 files changed, 3715 insertions(+), 2109 deletions(-)
Title: Cross-Validation for Multi-Population Mortality Models
Description: Implementation of cross-validation method for testing the forecasting accuracy of several multi-population mortality models. The family of multi-population includes several multi-population mortality models proposed through the actuarial and demography literature. The package includes functions for fitting and forecast the mortality rates of several populations. Additionally, we include functions for testing the forecasting accuracy of different multi-population models.
References.
Atance, D., Debon, A., and Navarro, E. (2020) <doi:10.3390/math8091550>.
Bergmeir, C. & Benitez, J.M. (2012) <doi:10.1016/j.ins.2011.12.028>.
Debon, A., Montes, F., & Martinez-Ruiz, F. (2011) <doi:10.1007/s13385-011-0043-z>.
Lee, R.D. & Carter, L.R. (1992) <doi:10.1080/01621459.1992.10475265>.
Russolillo, M., Giordano, G., & Haberman, S. (2011) <doi:10.1080/03461231003611933>.
Santolino, M. (2023) <doi:10.3390/risks11100170>.
Author: David Atance [aut, cre] ,
Ana Debon [aut]
Maintainer: David Atance <david.atance@uah.es>
Diff between CvmortalityMult versions 0.0.1 dated 2024-03-27 and 1.0.1 dated 2024-05-06
CvmortalityMult-0.0.1/CvmortalityMult/R/MAE.R |only CvmortalityMult-0.0.1/CvmortalityMult/R/MAPE.R |only CvmortalityMult-0.0.1/CvmortalityMult/R/MSE.R |only CvmortalityMult-0.0.1/CvmortalityMult/R/SSE.R |only CvmortalityMult-0.0.1/CvmortalityMult/R/fit_additive.LC.multi.R |only CvmortalityMult-0.0.1/CvmortalityMult/R/fit_multiplicative.LC.multi.R |only CvmortalityMult-0.0.1/CvmortalityMult/R/for_additive.LC.multi.R |only CvmortalityMult-0.0.1/CvmortalityMult/R/for_multiplicative.LC.multi.R |only CvmortalityMult-0.0.1/CvmortalityMult/R/plotLC.multi.R |only CvmortalityMult-0.0.1/CvmortalityMult/man/MAE.Rd |only CvmortalityMult-0.0.1/CvmortalityMult/man/MAPE.Rd |only CvmortalityMult-0.0.1/CvmortalityMult/man/MSE.Rd |only CvmortalityMult-0.0.1/CvmortalityMult/man/SSE.Rd |only CvmortalityMult-0.0.1/CvmortalityMult/man/fit_additive.LC.multi.Rd |only CvmortalityMult-0.0.1/CvmortalityMult/man/fit_multiplicative.LC.multi.Rd |only CvmortalityMult-0.0.1/CvmortalityMult/man/for_additive.LC.multi.Rd |only CvmortalityMult-0.0.1/CvmortalityMult/man/for_multiplicative.LC.multi.Rd |only CvmortalityMult-0.0.1/CvmortalityMult/man/plotLC.multi.Rd |only CvmortalityMult-1.0.1/CvmortalityMult/DESCRIPTION | 10 CvmortalityMult-1.0.1/CvmortalityMult/MD5 | 65 +- CvmortalityMult-1.0.1/CvmortalityMult/NAMESPACE | 23 CvmortalityMult-1.0.1/CvmortalityMult/R/MeasureAccuracy.R |only CvmortalityMult-1.0.1/CvmortalityMult/R/SpainNat.R | 12 CvmortalityMult-1.0.1/CvmortalityMult/R/SpainRegions.R | 17 CvmortalityMult-1.0.1/CvmortalityMult/R/fitLCmulti.R |only CvmortalityMult-1.0.1/CvmortalityMult/R/forecast.fitLCmulti.R |only CvmortalityMult-1.0.1/CvmortalityMult/R/multipopulation_cv.R | 259 ++++++---- CvmortalityMult-1.0.1/CvmortalityMult/R/multipopulation_loocv.R | 166 +++--- CvmortalityMult-1.0.1/CvmortalityMult/R/plot.fitLCmulti.R |only CvmortalityMult-1.0.1/CvmortalityMult/R/plot.forLCmulti.R |only CvmortalityMult-1.0.1/CvmortalityMult/R/regions.R | 20 CvmortalityMult-1.0.1/CvmortalityMult/README.md |only CvmortalityMult-1.0.1/CvmortalityMult/data/SpainNat.RData |binary CvmortalityMult-1.0.1/CvmortalityMult/data/SpainNat.rda |binary CvmortalityMult-1.0.1/CvmortalityMult/data/SpainRegions.RData |binary CvmortalityMult-1.0.1/CvmortalityMult/data/SpainRegions.rda |binary CvmortalityMult-1.0.1/CvmortalityMult/data/regions.RData |binary CvmortalityMult-1.0.1/CvmortalityMult/data/regions.rda |binary CvmortalityMult-1.0.1/CvmortalityMult/man/MeasureAccuracy.Rd |only CvmortalityMult-1.0.1/CvmortalityMult/man/SpainNat.Rd | 12 CvmortalityMult-1.0.1/CvmortalityMult/man/SpainRegions.Rd | 17 CvmortalityMult-1.0.1/CvmortalityMult/man/fitLCmulti.Rd |only CvmortalityMult-1.0.1/CvmortalityMult/man/forecast.fitLCmulti.Rd |only CvmortalityMult-1.0.1/CvmortalityMult/man/multipopulation_cv.Rd | 20 CvmortalityMult-1.0.1/CvmortalityMult/man/multipopulation_loocv.Rd | 19 CvmortalityMult-1.0.1/CvmortalityMult/man/plot.fitLCmulti.Rd |only CvmortalityMult-1.0.1/CvmortalityMult/man/plot.forLCmulti.Rd |only CvmortalityMult-1.0.1/CvmortalityMult/man/regions.Rd | 20 48 files changed, 388 insertions(+), 272 deletions(-)
More information about CvmortalityMult at CRAN
Permanent link
Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and
high-performance 2D drawing library. The 'ragg' package provides a set
of graphic devices based on AGG to use as alternative to the raster
devices provided through the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut]
,
Maxim Shemanarev [aut, cph] ,
Tony Juricic [ctb, cph] ,
Milan Marusinec [ctb, cph] ,
Spencer Garrett [ctb] ,
Posit, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ragg versions 1.3.0 dated 2024-03-13 and 1.3.1 dated 2024-05-06
DESCRIPTION | 6 +-- MD5 | 26 ++++++++-------- NEWS.md | 7 ++++ man/agg_capture.Rd | 30 +++++++++---------- man/agg_jpeg.Rd | 56 ++++++++++++++++++------------------ man/agg_png.Rd | 36 +++++++++++------------ man/agg_ppm.Rd | 28 +++++++++--------- man/agg_supertransparent.Rd | 32 ++++++++++---------- man/agg_tiff.Rd | 36 +++++++++++------------ src/AggDevice.h | 33 +++++++++++++-------- src/agg/include/agg_font_freetype.h | 2 + src/agg/src/agg_font_freetype.cpp | 1 src/init_device.h | 2 - src/text_renderer.h | 2 - 14 files changed, 158 insertions(+), 139 deletions(-)
Title: Grammar Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Geometries: geom_table(), geom_plot() and geom_grob() add insets to
plots using native data coordinates, while geom_table_npc(), geom_plot_npc()
and geom_grob_npc() do the same using "npc" coordinates through new
aesthetics "npcx" and "npcy". Statistics: select observations based on 2D
density. Positions: radial nudging away from a center point and nudging away
from a line or curve; combined stacking and nudging; combined dodging and
nudging.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Michal Krassowski [ctb] ,
Daniel Sabanes Bove [ctb],
Stella Banjo [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpp versions 0.5.6 dated 2024-01-09 and 0.5.7 dated 2024-05-06
ggpp-0.5.6/ggpp/tests/testthat/testthat-problems.rds |only ggpp-0.5.7/ggpp/DESCRIPTION | 39 ggpp-0.5.7/ggpp/MD5 | 131 ggpp-0.5.7/ggpp/NAMESPACE | 7 ggpp-0.5.7/ggpp/NEWS.md | 40 ggpp-0.5.7/ggpp/R/compute-npc.r | 116 ggpp-0.5.7/ggpp/R/geom-label-linked.r | 32 ggpp-0.5.7/ggpp/R/geom-label-pairwise.r | 17 ggpp-0.5.7/ggpp/R/geom-point-linked.r | 50 ggpp-0.5.7/ggpp/R/geom-text-linked.r | 109 ggpp-0.5.7/ggpp/R/geom-text-pairwise.R | 21 ggpp-0.5.7/ggpp/R/ggp2-margins.R | 51 ggpp-0.5.7/ggpp/R/ggpp-legend-draw.R |only ggpp-0.5.7/ggpp/R/scale-continuous-npc.r | 9 ggpp-0.5.7/ggpp/R/stat-format-table.R | 41 ggpp-0.5.7/ggpp/R/utilities.R | 22 ggpp-0.5.7/ggpp/R/weather-data.R | 1 ggpp-0.5.7/ggpp/R/wrap-labels.R |only ggpp-0.5.7/ggpp/README.md | 145 ggpp-0.5.7/ggpp/build/partial.rdb |binary ggpp-0.5.7/ggpp/build/vignette.rds |binary ggpp-0.5.7/ggpp/inst/doc/grammar-extensions.R | 118 ggpp-0.5.7/ggpp/inst/doc/grammar-extensions.Rmd | 290 ggpp-0.5.7/ggpp/inst/doc/grammar-extensions.html | 1724 +++- ggpp-0.5.7/ggpp/inst/doc/nudge-examples.html | 20 ggpp-0.5.7/ggpp/man/compute_npcx.Rd | 69 ggpp-0.5.7/ggpp/man/figures/README-readme-03-1.png |binary ggpp-0.5.7/ggpp/man/figures/README-unnamed-chunk-1-1.png |binary ggpp-0.5.7/ggpp/man/figures/README-unnamed-chunk-2-1.png |binary ggpp-0.5.7/ggpp/man/geom_point_s.Rd | 33 ggpp-0.5.7/ggpp/man/geom_text_pairwise.Rd | 10 ggpp-0.5.7/ggpp/man/geom_text_s.Rd | 88 ggpp-0.5.7/ggpp/man/ggpp_draw_key.Rd |only ggpp-0.5.7/ggpp/man/stat_fmt_tb.Rd | 26 ggpp-0.5.7/ggpp/man/weather_18_june_2019.df.Rd | 1 ggpp-0.5.7/ggpp/man/wrap_labels.Rd |only ggpp-0.5.7/ggpp/tests/testthat/Rplots.pdf |binary ggpp-0.5.7/ggpp/tests/testthat/_snaps/annotate/annotate-label.svg | 4 ggpp-0.5.7/ggpp/tests/testthat/_snaps/annotate/annotate-plot-npc1.svg | 16 ggpp-0.5.7/ggpp/tests/testthat/_snaps/annotate/annotate-plot-npc2.svg | 32 ggpp-0.5.7/ggpp/tests/testthat/_snaps/annotate/annotate-plot.svg | 16 ggpp-0.5.7/ggpp/tests/testthat/_snaps/geom-plot/geom-plot-npc-1.svg | 16 ggpp-0.5.7/ggpp/tests/testthat/_snaps/geom-plot/geom-plot-npc-2.svg | 16 ggpp-0.5.7/ggpp/tests/testthat/_snaps/geom-plot/geom-plot-three-angles.svg | 48 ggpp-0.5.7/ggpp/tests/testthat/_snaps/geom-plot/geom-plot-three-plots.svg | 48 ggpp-0.5.7/ggpp/tests/testthat/_snaps/geom-text_linked/geom-text-s30.svg | 12 ggpp-0.5.7/ggpp/tests/testthat/_snaps/geom-text_linked/geom-text-s40.svg | 26 ggpp-0.5.7/ggpp/tests/testthat/_snaps/geom-text_linked/geom-text-s41.svg | 26 ggpp-0.5.7/ggpp/tests/testthat/_snaps/geom-text_linked/geom-text-s42.svg | 26 ggpp-0.5.7/ggpp/tests/testthat/_snaps/geom-text_linked/geom-text-s43.svg | 26 ggpp-0.5.7/ggpp/tests/testthat/_snaps/geom-text_linked/geom-text-s51.svg | 26 ggpp-0.5.7/ggpp/tests/testthat/_snaps/geom-text_linked/geom-text-s52.svg | 26 ggpp-0.5.7/ggpp/tests/testthat/_snaps/position-nudge/nudge-center6.svg |only ggpp-0.5.7/ggpp/tests/testthat/_snaps/position-nudge/nudge-center7.svg |only ggpp-0.5.7/ggpp/tests/testthat/_snaps/position-nudge/nudge-line1.svg | 4 ggpp-0.5.7/ggpp/tests/testthat/_snaps/position-nudge/nudge-line2.svg | 6 ggpp-0.5.7/ggpp/tests/testthat/_snaps/stat-d1d-flt/stat-d1d-flt-08.svg | 3314 +++------ ggpp-0.5.7/ggpp/tests/testthat/_snaps/stat-d1d-flt/stat-d1d-flt-09.svg | 3614 +++------- ggpp-0.5.7/ggpp/tests/testthat/_snaps/stat-d1d-flt/stat-d1d-lbl-x08.svg | 3314 +++------ ggpp-0.5.7/ggpp/tests/testthat/_snaps/stat-d1d-flt/stat-d1d-lbl-x09.svg | 3614 +++------- ggpp-0.5.7/ggpp/tests/testthat/test-compute_npc.R |only ggpp-0.5.7/ggpp/tests/testthat/test-compute_npcx.R | 8 ggpp-0.5.7/ggpp/tests/testthat/test-compute_npcy.R | 9 ggpp-0.5.7/ggpp/tests/testthat/test-draw-key-label-s.R |only ggpp-0.5.7/ggpp/tests/testthat/test-draw-key-text-s.R |only ggpp-0.5.7/ggpp/tests/testthat/test-geom-text.R | 19 ggpp-0.5.7/ggpp/tests/testthat/test-position-nudge.R | 18 ggpp-0.5.7/ggpp/tests/testthat/test-position_dodge2nudge.R | 1 ggpp-0.5.7/ggpp/tests/testthat/test-stat-d1d-flt.R | 8 ggpp-0.5.7/ggpp/tests/testthat/test-stat_fmt_tb.R | 11 ggpp-0.5.7/ggpp/tests/testthat/test-wrap-labels.R |only ggpp-0.5.7/ggpp/vignettes/grammar-extensions.Rmd | 290 72 files changed, 7467 insertions(+), 10337 deletions(-)
Title: Multiple Data Analysis Tools for Property Listing Tasks
Description: Application to estimate statistical values using properties provided by a group of individuals to describe
concepts using 'shiny'. It estimates the underlying distribution to generate new descriptive words
Canessa et al. (2023) <doi:10.3758/s13428-022-01811-w>, applies a new clustering model, and uses simulations to estimate
the probability that two persons describe the same words based on their descriptions
Canessa et al. (2022) <doi:10.3758/s13428-022-02030-z>.
Author: Sebastian Moreno [aut, cre],
Cristobal Heredia [aut],
Enrique Canessa [ths],
Sergio Chaigneau [ths]
Maintainer: Sebastian Moreno <sebastian.moreno.araya@gmail.com>
Diff between WordListsAnalytics versions 0.2.1 dated 2024-04-23 and 0.2.2 dated 2024-05-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/PLT_server.R | 4 ++-- R/tab_cluster_image.R | 4 ++-- 4 files changed, 10 insertions(+), 10 deletions(-)
More information about WordListsAnalytics at CRAN
Permanent link
Title: Write Events for 'TensorBoard'
Description: Provides a convenient way to log scalars, images, audio, and histograms in the 'tfevent' record file format.
Logged data can be visualized on the fly using 'TensorBoard', a web based tool that focuses on visualizing the training
progress of machine learning models.
Author: Daniel Falbel [aut, cre, cph],
Posit, PBC [cph],
The tl::optional authors [cph] ,
Mark Adler [cph]
Maintainer: Daniel Falbel <daniel@posit.co>
Diff between tfevents versions 0.0.2 dated 2023-03-07 and 0.0.3 dated 2024-05-06
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 6 ++++++ R/events.R | 12 +++++++++++- README.md | 6 +++--- configure | 2 +- man/figures/README-tensorboard-1.png |binary src/Makevars.win | 12 +++++------- src/reader.h | 1 + tools/winlibs.R | 23 ++++++++++++++++------- 10 files changed, 55 insertions(+), 31 deletions(-)
Title: Fast and Portable Character String Processing Facilities
Description: A collection of character string/text/natural language
processing tools for pattern searching (e.g., with 'Java'-like regular
expressions or the 'Unicode' collation algorithm), random string generation,
case mapping, string transliteration, concatenation, sorting, padding,
wrapping, Unicode normalisation, date-time formatting and parsing,
and many more. They are fast, consistent, convenient, and -
thanks to 'ICU' (International Components for Unicode) -
portable across all locales and platforms. Documentation about 'stringi' is
provided via its website at <https://stringi.gagolewski.com/> and
the paper by Gagolewski (2022, <doi:10.18637/jss.v103.i02>).
Author: Marek Gagolewski [aut, cre, cph] ,
Bartek Tartanus [ctb], and others ;
Unicode, Inc. and others
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between stringi versions 1.8.3 dated 2023-12-11 and 1.8.4 dated 2024-05-06
DESCRIPTION | 8 LICENSE | 2 MD5 | 340 +++++++++++++++---------------- NEWS | 8 R/ICU_settings.R | 2 R/compare.R | 2 R/encoding.R | 2 R/encoding_conversion.R | 2 R/encoding_detection.R | 2 R/encoding_management.R | 2 R/escape.R | 2 R/files.R | 2 R/install.R | 2 R/internal_prepare_arg.R | 2 R/internal_test.R | 2 R/join.R | 2 R/length.R | 2 R/locale.R | 2 R/locale_management.R | 2 R/opts.R | 2 R/pad.R | 2 R/random.R | 2 R/reverse.R | 2 R/search.R | 2 R/search_count_4.R | 2 R/search_count_bound.R | 2 R/search_detect_4.R | 2 R/search_extract_4.R | 2 R/search_extract_bound.R | 2 R/search_locate_4.R | 2 R/search_locate_bound.R | 2 R/search_match_4.R | 2 R/search_replace_4.R | 2 R/search_split_4.R | 2 R/search_split_bound.R | 2 R/search_startsendswith_4.R | 2 R/search_subset_4.R | 2 R/sort.R | 2 R/sprintf.R | 2 R/stats.R | 2 R/stringi-package.R | 2 R/sub.R | 2 R/time_calendar.R | 2 R/time_format.R | 2 R/time_symbols.R | 2 R/time_zone.R | 2 R/trans_casemap.R | 2 R/trans_normalization.R | 2 R/trans_other.R | 2 R/trans_transliterate.R | 2 R/trim.R | 2 R/utils.R | 2 R/wrap.R | 2 configure.ac | 2 configure.win | 2 src/Makevars.in | 2 src/Makevars.win | 7 src/install.libs.R.in | 2 src/stri_ICU_settings.cpp | 2 src/stri_brkiter.cpp | 2 src/stri_brkiter.h | 2 src/stri_bytesearch_matcher.h | 2 src/stri_collator.cpp | 2 src/stri_common.cpp | 2 src/stri_compare.cpp | 2 src/stri_container_base.cpp | 2 src/stri_container_base.h | 2 src/stri_container_bytesearch.cpp | 2 src/stri_container_bytesearch.h | 2 src/stri_container_charclass.h | 6 src/stri_container_double.h | 6 src/stri_container_integer.h | 2 src/stri_container_listint.cpp | 2 src/stri_container_listint.h | 2 src/stri_container_listraw.cpp | 2 src/stri_container_listraw.h | 2 src/stri_container_listutf8.cpp | 2 src/stri_container_listutf8.h | 2 src/stri_container_logical.h | 6 src/stri_container_regex.cpp | 2 src/stri_container_regex.h | 2 src/stri_container_usearch.cpp | 2 src/stri_container_usearch.h | 2 src/stri_container_utf16.cpp | 6 src/stri_container_utf16.h | 2 src/stri_container_utf8.cpp | 6 src/stri_container_utf8.h | 2 src/stri_container_utf8_indexable.cpp | 2 src/stri_container_utf8_indexable.h | 2 src/stri_encoding_conversion.cpp | 2 src/stri_encoding_detection.cpp | 2 src/stri_encoding_management.cpp | 2 src/stri_escape.cpp | 2 src/stri_exception.cpp | 2 src/stri_exception.h | 2 src/stri_exports.h | 2 src/stri_external.h | 2 src/stri_interval.h | 2 src/stri_intvec.h | 2 src/stri_join.cpp | 2 src/stri_length.cpp | 2 src/stri_macros.h | 2 src/stri_messages.h | 2 src/stri_pad.cpp | 2 src/stri_prepare_arg.cpp | 36 +-- src/stri_random.cpp | 2 src/stri_reverse.cpp | 2 src/stri_search_boundaries_count.cpp | 2 src/stri_search_boundaries_extract.cpp | 2 src/stri_search_boundaries_locate.cpp | 2 src/stri_search_boundaries_split.cpp | 2 src/stri_search_class_count.cpp | 2 src/stri_search_class_detect.cpp | 2 src/stri_search_class_extract.cpp | 2 src/stri_search_class_locate.cpp | 2 src/stri_search_class_replace.cpp | 2 src/stri_search_class_split.cpp | 2 src/stri_search_class_startsendswith.cpp | 2 src/stri_search_class_subset.cpp | 2 src/stri_search_class_trim.cpp | 2 src/stri_search_coll_count.cpp | 2 src/stri_search_coll_detect.cpp | 2 src/stri_search_coll_extract.cpp | 2 src/stri_search_coll_locate.cpp | 2 src/stri_search_coll_replace.cpp | 2 src/stri_search_coll_split.cpp | 2 src/stri_search_coll_startsendswith.cpp | 2 src/stri_search_coll_subset.cpp | 2 src/stri_search_common.cpp | 2 src/stri_search_fixed_count.cpp | 2 src/stri_search_fixed_detect.cpp | 2 src/stri_search_fixed_extract.cpp | 2 src/stri_search_fixed_locate.cpp | 2 src/stri_search_fixed_replace.cpp | 2 src/stri_search_fixed_split.cpp | 2 src/stri_search_fixed_startsendswith.cpp | 2 src/stri_search_fixed_subset.cpp | 2 src/stri_search_in.cpp | 2 src/stri_search_other_split.cpp | 2 src/stri_search_regex_count.cpp | 2 src/stri_search_regex_detect.cpp | 2 src/stri_search_regex_extract.cpp | 2 src/stri_search_regex_locate.cpp | 2 src/stri_search_regex_match.cpp | 2 src/stri_search_regex_replace.cpp | 2 src/stri_search_regex_split.cpp | 2 src/stri_search_regex_subset.cpp | 2 src/stri_sort.cpp | 2 src/stri_sprintf.cpp | 2 src/stri_stats.cpp | 2 src/stri_string8.cpp | 2 src/stri_string8.h | 2 src/stri_string8buf.h | 2 src/stri_stringi.cpp | 2 src/stri_stringi.h | 2 src/stri_sub.cpp | 4 src/stri_test.cpp | 2 src/stri_time_calendar.cpp | 2 src/stri_time_format.cpp | 2 src/stri_time_symbols.cpp | 2 src/stri_time_zone.cpp | 2 src/stri_trans_casemap.cpp | 2 src/stri_trans_normalization.cpp | 2 src/stri_trans_other.cpp | 2 src/stri_trans_transliterate.cpp | 2 src/stri_ucnv.cpp | 2 src/stri_ucnv.h | 2 src/stri_uloc.cpp | 2 src/stri_utils.cpp | 2 src/stri_wrap.cpp | 2 src/uconfig_local.h.in | 2 171 files changed, 379 insertions(+), 374 deletions(-)
Title: Interface Between R and the OpenStreetMap-Based Routing Service
OSRM
Description: An interface between R and the 'OSRM' API. 'OSRM' is a routing
service based on 'OpenStreetMap' data. See <http://project-osrm.org/> for more
information. This package enables the computation of routes, trips, isochrones and
travel distances matrices (travel time and kilometric distance).
Author: Timothee Giraud [cre, aut] ,
Robin Cura [ctb] ,
Matthieu Viry [ctb] ,
Robin Lovelace [ctb]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between osrm versions 4.1.1 dated 2023-03-30 and 4.2.0 dated 2024-05-06
DESCRIPTION | 20 +++++++++++--------- MD5 | 12 ++++++------ NEWS | 9 +++++++++ R/osrmTrip.R | 14 +++++++------- R/package.R | 6 +----- R/utils.R | 26 +++++++++++++------------- man/osrm.Rd | 20 ++++++++++++++++++++ 7 files changed, 67 insertions(+), 40 deletions(-)
Title: 'REDCap' Data Management
Description: REDCap Data Management - REDCapDM is an R package that allows users to manage data exported directly from REDCap or using an API connection. This package includes several functions designed for pre-processing data, generating reports of queries such as outliers or missing values, and following up on the identified queries. 'REDCap' (Research Electronic Data CAPture; <https://projectredcap.org>) is a web application developed at Vanderbilt University, designed for creating and managing online surveys and databases and the REDCap API is an interface that allows external applications to connect to REDCap remotely, and is used to programmatically retrieve or modify project data or settings within REDCap, such as importing or exporting data.
Author: Joao Carmezim [aut, cre],
Pau Satorra [aut],
Judith Penafiel [aut],
Esther Garcia [aut],
Natalia Pallares [aut],
Cristian Tebe [aut]
Maintainer: Joao Carmezim <jcarmezim@igtp.cat>
Diff between REDCapDM versions 0.9.8 dated 2024-02-20 and 0.9.9 dated 2024-05-06
DESCRIPTION | 17 ++--- MD5 | 10 +- NEWS.md | 177 +++++++++++++++++++++++++++++++++++------------------ R/redcap_data.R | 36 +++++++--- README.md |only build/vignette.rds |binary inst/CITATION |only 7 files changed, 158 insertions(+), 82 deletions(-)
Title: MCMC Generalised Linear Mixed Models
Description: Fits Multivariate Generalised Linear Mixed Models (and related models) using Markov chain Monte Carlo techniques (Hadfield 2010 J. Stat. Soft.).
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield <j.hadfield@ed.ac.uk>
Diff between MCMCglmm versions 2.35 dated 2023-06-30 and 2.36 dated 2024-05-06
DESCRIPTION | 9 +++++---- MD5 | 50 +++++++++++++++++++++++++------------------------- R/MCMCglmm.R | 8 +++++++- R/inverseA.R | 6 ++---- R/priorformat.R | 4 ++-- R/sir.R | 8 ++++++-- man/MCMCglmm.Rd | 2 +- man/sir.Rd | 3 ++- src/MCMCglmm.cc | 14 +++++++------- src/cs_add.c | 2 +- src/cs_addR.c | 2 +- src/cs_cbind.c | 4 ++-- src/cs_chol.c | 2 +- src/cs_directsum.c | 2 +- src/cs_inv.c | 4 ++-- src/cs_invR.c | 4 ++-- src/cs_kroneckerA.c | 3 ++- src/cs_kroneckerDA.c | 3 ++- src/cs_kroneckerDI.c | 4 +++- src/cs_kroneckerI.c | 2 +- src/cs_kroneckerSI.c | 4 +++- src/cs_omega.c | 5 +++-- src/cs_rAnte.c | 4 ++-- src/cs_rinvwishart.c | 2 +- src/cs_schol.c | 2 +- src/cs_sortdv.c | 8 ++++++-- 26 files changed, 91 insertions(+), 70 deletions(-)
Title: Functions to Facilitate the Simulation of Large Scale Assessment
Data
Description: Provides functions to simulate data from large-scale educational
assessments, including background questionnaire data and cognitive item
responses that adhere to a multiple-matrix sampled design. The theoretical
foundation can be found on
Matta, T.H., Rutkowski, L., Rutkowski, D. et al. (2018)
<doi:10.1186/s40536-018-0068-8>.
Author: Tyler Matta [aut],
Leslie Rutkowski [aut],
David Rutkowski [aut],
Yuan-Ling Linda Liaw [aut],
Kondwani Kajera Mughogho [ctb],
Waldir Leoncio [aut, cre],
Sinan Yavuz [ctb],
Paul Bailey [ctb]
Maintainer: Waldir Leoncio <w.l.netto@medisin.uio.no>
Diff between lsasim versions 2.1.4 dated 2023-08-22 and 2.1.5 dated 2024-05-06
DESCRIPTION | 12 MD5 | 86 +++-- NEWS.md |only R/anova.R | 2 R/beta_gen.R | 2 R/block_design.R | 30 +- R/booklet_design.R | 40 +- R/brr.R | 10 R/calc_replicate_weights.R | 4 R/cluster_gen.R | 4 R/cluster_gen_separate.R | 2 R/cluster_gen_together.R | 2 R/irt_gen.R | 4 R/pisa2012_q_cormat.R | 54 +-- R/summary.R | 2 R/trim_sample.R | 6 R/validate.R | 2 R/weight_responses.R | 6 build/vignette.rds |binary inst/doc/ex1_BackgroundQuestionnaireGeneration.Rmd | 6 inst/doc/ex1_BackgroundQuestionnaireGeneration.html | 210 +++++++------- inst/doc/ex2_UnderstandingElementsOutput.R | 4 inst/doc/ex2_UnderstandingElementsOutput.html | 139 ++++----- inst/doc/ex3_RetrievingRegressionCoefficients.html | 137 ++++----- inst/doc/ex4_GeneratingClusterSamples.Rmd | 2 inst/doc/ex4_GeneratingClusterSamples.html | 289 +++++++++----------- man/anova.lsasimcluster.Rd | 2 man/beta_gen.Rd | 2 man/block_design.Rd | 8 man/booklet_design.Rd | 14 man/brr.Rd | 2 man/calc_replicate_weights.Rd | 2 man/cluster_gen.Rd | 4 man/cluster_gen_separate.Rd | 2 man/cluster_gen_together.Rd | 2 man/irt_gen.Rd | 2 man/lsasim.Rd | 2 man/pisa2012_q_cormat.Rd | 34 +- man/summary.lsasimcluster.Rd | 2 man/trim_sample.Rd | 4 man/validate_questionnaire_gen.Rd | 2 man/weight_responses.Rd | 4 tests/testthat/test.issue50.R |only vignettes/ex1_BackgroundQuestionnaireGeneration.Rmd | 6 vignettes/ex4_GeneratingClusterSamples.Rmd | 2 45 files changed, 573 insertions(+), 578 deletions(-)
Title: Estimation in Difference-in-Difference Designs with Multiple
Groups and Periods
Description: Estimation of event-study Difference-in-Difference (DID) estimators in designs with multiple groups and periods, and with a potentially non-binary treatment that may increase or decrease multiple times.
Author: Diego Ciccia [aut, cre],
Felix Knau [aut],
Melitine Malezieux [aut],
Doulo Sow [aut],
Clement de Chaisemartin [aut]
Maintainer: Diego Ciccia <diego.ciccia@sciencespo.fr>
Diff between DIDmultiplegtDYN versions 1.0.8 dated 2024-04-23 and 1.0.9 dated 2024-05-06
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/did_multiplegt_bootstrap.R | 4 +++- R/did_multiplegt_by_path.R | 4 +++- R/did_multiplegt_dyn.R | 8 +++++--- R/did_multiplegt_dyn_core.R | 6 ++++++ R/did_multiplegt_main.R | 14 ++++++++------ man/did_multiplegt_dyn.Rd | 3 +++ 9 files changed, 43 insertions(+), 22 deletions(-)
More information about DIDmultiplegtDYN at CRAN
Permanent link
Title: Single Trial Analysis (STA) of Field Trials
Description: Phenotypic analysis of field trials using mixed models with and
without spatial components. One of a series of statistical genetic packages
for streamlining the analysis of typical plant breeding experiments developed
by Biometris.
Some functions have been created to be used in conjunction with the R
package 'asreml' for the 'ASReml' software, which can be obtained upon
purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r>).
Author: Bart-Jan van Rossum [aut, cre]
,
Fred van Eeuwijk [ctb] ,
Martin Boer [ctb] ,
Marcos Malosetti [ctb] ,
Daniela Bustos-Korts [ctb] ,
Emilie J. Millet [ctb] ,
Joao Paulo [ctb] ,
Maikel Verouden [ctb] ,
Willem Kruijer [ctb] ,
Ron Wehrens [ctb] ,
Choazhi [...truncated...]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenSTA versions 1.0.12 dated 2023-11-03 and 1.0.13 dated 2024-05-06
DESCRIPTION | 8 +++--- MD5 | 20 ++++++++-------- NEWS.md | 4 +++ R/createSTA.R | 15 ++++++++++++ R/extractSTA.R | 57 +++++++++++++++++++++++++++++++++++----------- R/mapPlot.R | 3 +- R/utils.R | 2 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/statgenSTA.html | 31 ++++++++++++------------- tests/testthat/Rplots.pdf |binary 11 files changed, 96 insertions(+), 44 deletions(-)
Title: Genotype by Environment (GxE) Analysis
Description: Analysis of multi environment data of plant breeding experiments
following the analyses described in Malosetti, Ribaut,
and van Eeuwijk (2013), <doi:10.3389/fphys.2013.00044>.
One of a series of statistical genetic packages for streamlining the analysis of
typical plant breeding experiments developed by Biometris.
Some functions have been created to be used in conjunction with the R
package 'asreml' for the 'ASReml' software, which can be obtained upon
purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r>).
Author: Bart-Jan van Rossum [aut, cre],
Fred van Eeuwijk [ctb] ,
Martin Boer [ctb],
Marcos Malosetti [ctb] ,
Daniela Bustos-Korts [ctb] ,
Emilie J Millet [ctb] ,
Joao Paulo [ctb] ,
Maikel Verouden [ctb] ,
Willem Kruijer [ctb] ,
Ron Wehrens [ctb] ,
Choazhi Zh [...truncated...]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenGxE versions 1.0.7 dated 2024-03-19 and 1.0.8 dated 2024-05-06
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/utils.R | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/statgenGxE.html | 6 +++--- 7 files changed, 18 insertions(+), 14 deletions(-)
Title: Thematic Cartography
Description: Create and integrate thematic maps in your workflow. This package
helps to design various cartographic representations such as proportional
symbols, choropleth or typology maps. It also offers several functions to
display layout elements that improve the graphic presentation of maps
(e.g. scale bar, north arrow, title, labels). 'mapsf' maps 'sf' objects on
'base' graphics.
Author: Timothee Giraud [cre, aut] ,
Hugues Pecout [ctb] ,
Ronan Ysebaert [ctb] ,
Ian Fellows [cph] ,
Jim Lemon [cph]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between mapsf versions 0.9.0 dated 2024-01-26 and 0.10.1 dated 2024-05-06
DESCRIPTION | 8 - MD5 | 18 +- NEWS.md | 20 +++ R/mf_labels_utils.R | 4 R/mf_map.R | 332 +++++++++++++++++++++++++++++++++++++++++++++----- R/mf_raster.R | 4 README.md | 6 build/vignette.rds |binary inst/doc/mapsf.html | 20 +-- man/mf_map.Rd | 344 ++++++++++++++++++++++++++++++++++++++++++---------- 10 files changed, 629 insertions(+), 127 deletions(-)
Title: Automated Estimation of Sigmoidal and Piecewise Linear Mixed
Models
Description: Estimation of relatively complex nonlinear mixed-effects models, including the Sigmoidal Mixed Model and the Piecewise Linear Mixed Model with abrupt or smooth transition, through a single intuitive line of code and with automated generation of starting values.
Author: Maude Wagner [aut, cre] ,
Ana W. Capuano [aut],
Emmanuelle Comets [ctb]
Maintainer: Maude Wagner <maude_wagner@rush.edu>
Diff between nlive versions 0.4.0 dated 2024-04-28 and 0.5.0 dated 2024-05-06
DESCRIPTION | 20 - MD5 | 12 R/nlive.R | 2 R/nlive.inspect.R | 6 R/nlive.pmma.R | 58 +-- R/nlive.pmms.R | 31 + R/nlive.smm.R | 847 +++++++++++++++++++++++++++--------------------------- 7 files changed, 493 insertions(+), 483 deletions(-)
Title: Stratigraphic Tree Analysis for Palaeontology
Description: Functions for the stratigraphic analysis of phylogenetic trees.
Author: Mark A. Bell [aut, cph],
Graeme T. Lloyd [aut, cre, cph]
Maintainer: Graeme T. Lloyd <graemetlloyd@gmail.com>
Diff between strap versions 1.6-0 dated 2022-06-13 and 1.6-1 dated 2024-05-06
CHANGELOG | 4 ++++ DESCRIPTION | 12 +++++++----- MD5 | 8 ++++---- R/DatePhyloHedman.R | 2 +- inst/CITATION | 19 ++++++++++--------- 5 files changed, 26 insertions(+), 19 deletions(-)
Title: Czech Interest & Foreign Exchange Rates
Description: Interface to interest and foreign exchange rates published by the Czech National Bank.
Author: Jindra Lacko [aut, cre]
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between czechrates versions 0.2.4 dated 2023-09-08 and 0.2.5 dated 2024-05-06
czechrates-0.2.4/czechrates/man/czechrates-package.Rd |only czechrates-0.2.5/czechrates/DESCRIPTION | 10 +++++----- czechrates-0.2.5/czechrates/MD5 | 16 ++++++++-------- czechrates-0.2.5/czechrates/NEWS.md | 4 ++++ czechrates-0.2.5/czechrates/R/cnbfxrate.R | 4 +++- czechrates-0.2.5/czechrates/R/czechrates.R | 5 ++--- czechrates-0.2.5/czechrates/R/repo2w.R | 2 +- czechrates-0.2.5/czechrates/build/vignette.rds |binary czechrates-0.2.5/czechrates/inst/doc/vignette.html | 2 +- czechrates-0.2.5/czechrates/man/czechrates.Rd |only 10 files changed, 24 insertions(+), 19 deletions(-)
Title: Setup and connect to 'OpenTripPlanner'
Description: Setup and connect to 'OpenTripPlanner' (OTP) <http://www.opentripplanner.org/>.
OTP is an open source platform for multi-modal and multi-agency
journey planning written in 'Java'. The package allows you to manage a local version or
connect to remote OTP server to find walking, cycling, driving, or transit routes.
This package has been peer-reviewed by rOpenSci (v. 0.2.0.0).
Author: Malcolm Morgan [aut, cre] ,
Marcus Young [aut] ,
Robin Lovelace [aut] ,
Layik Hama [ctb]
Maintainer: Malcolm Morgan <m.morgan1@leeds.ac.uk>
Diff between opentripplanner versions 0.5.1 dated 2023-02-02 and 0.5.2 dated 2024-05-06
DESCRIPTION | 8 - MD5 | 67 +++++++------- NEWS.md | 7 + R/otp-isochrone-batch.R | 52 +++++------ R/otp-plan.R | 148 ++++++++++++++++++-------------- R/otp-setup.R | 12 ++ R/otp-surface.R | 17 ++- build/vignette.rds |binary inst/doc/Analyst.R | 12 +- inst/doc/Analyst.Rmd | 4 inst/doc/Analyst.html | 71 +++++++-------- inst/doc/OTPv2.R | 4 inst/doc/OTPv2.Rmd | 6 - inst/doc/OTPv2.html | 37 +++----- inst/doc/advanced_features.R | 34 +++---- inst/doc/advanced_features.Rmd | 2 inst/doc/advanced_features.html | 160 +++++++++++++++++------------------ inst/doc/known_issues.html | 4 inst/doc/opentripplanner.R | 26 ++--- inst/doc/opentripplanner.Rmd | 2 inst/doc/opentripplanner.html | 92 ++++++++++---------- inst/doc/prerequisites.R | 1 inst/doc/prerequisites.Rmd | 6 - inst/doc/prerequisites.html | 16 +-- man/otp_isochrone.Rd | 5 - man/otp_plan.Rd | 7 - man/otp_surface_isochrone.Rd | 2 tests/testthat/test_02_without_OTP.R | 36 +++++++ tests/testthat/test_03_with_OTP.R | 43 +++++---- vignettes/Analyst.Rmd | 4 vignettes/OTPv2.Rmd | 6 - vignettes/advanced_features.Rmd | 2 vignettes/centroids.gpkg |only vignettes/opentripplanner.Rmd | 2 vignettes/prerequisites.Rmd | 6 - 35 files changed, 492 insertions(+), 409 deletions(-)
More information about opentripplanner at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-01 1.1.3
2023-06-05 1.1.2
2022-10-18 1.1.1
Title: Tests of Non-Nested Models
Description: Testing non-nested models via theory supplied by Vuong (1989) <DOI:10.2307/1912557>.
Includes tests of model distinguishability and of model fit that can be applied
to both nested and non-nested models. Also includes functionality to obtain
confidence intervals associated with AIC and BIC. This material is partially based on
work supported by the National Science Foundation under Grant Number SES-1061334.
Author: Edgar Merkle [aut, cre],
Dongjun You [aut],
Lennart Schneider [ctb],
Mauricio Garnier-Villarreal [ctb],
Seongho Bae [ctb]
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between nonnest2 versions 0.5-6 dated 2023-08-13 and 0.5-7 dated 2024-05-06
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/icci.R | 6 +++--- R/vuongtest.R | 2 +- build/vignette.rds |binary inst/doc/nonnest2.pdf |binary 6 files changed, 14 insertions(+), 14 deletions(-)
Title: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis
Tests
Description: Compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 100 classes of statistical and machine learning models in R. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference.
Author: Vincent Arel-Bundock [aut, cre, cph]
,
Noah Greifer [ctb] ,
Etienne Bacher [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between marginaleffects versions 0.19.0 dated 2024-04-13 and 0.20.0 dated 2024-05-06
DESCRIPTION | 42 +++---- MD5 | 74 ++++++------- NAMESPACE | 2 NEWS.md | 21 +++ R/comparisons.R | 4 R/get_contrasts.R | 5 R/get_hypothesis.R | 46 +++++++- R/get_predict.R | 2 R/hypotheses.R | 8 + R/hypothesis_helper.R |only R/imputation.R | 2 R/methods_brms.R | 1 R/methods_flexsurv.R | 2 R/methods_mlogit.R | 3 R/methods_nnet.R | 2 R/methods_ordinal.R | 1 R/methods_survey.R | 26 ++++ R/package.R | 2 R/plot_comparisons.R | 5 R/plot_predictions.R | 5 R/plot_slopes.R | 5 R/predictions.R | 15 ++ R/print.R | 37 +++--- R/sanitize_comparison.R | 17 ++- R/sanitize_condition.R | 1 R/sanitize_hypothesis.R | 2 R/sanitize_newdata.R | 7 + R/sanity_model.R | 3 R/slopes.R | 6 - R/utils.R | 9 + README.md | 22 ---- inst/WORDLIST | 225 ++++++++++++++++++++--------------------- man/comparisons.Rd | 4 man/get_predict.Rd | 9 + man/hypotheses.Rd | 4 man/predictions.Rd | 4 man/sanitize_model_specific.Rd | 14 ++ man/slopes.Rd | 4 man/specify_hypothesis.Rd |only 39 files changed, 405 insertions(+), 236 deletions(-)
More information about marginaleffects at CRAN
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