Title: Formatting Numbers in 'rmarkdown' Documents
Description: Provides a small set of tools for formatting numbers in R-markdown
documents. Convert a numerical vector to character strings in power-of-ten
form, decimal form, or measurement-units form; all are math-delimited for
rendering as inline equations. Can also convert text into math-delimited
text to match the font face and size of math-delimited numbers. Useful for
rendering single numbers in inline R code chunks and for rendering columns
in tables.
Author: Richard Layton [aut, cre]
Maintainer: Richard Layton <graphdoctor@gmail.com>
Diff between formatdown versions 0.1.3 dated 2024-03-15 and 0.1.4 dated 2024-05-07
formatdown-0.1.3/formatdown/inst/doc/format_integers_and_decimals.R |only formatdown-0.1.3/formatdown/inst/doc/format_integers_and_decimals.Rmd |only formatdown-0.1.3/formatdown/inst/doc/format_integers_and_decimals.html |only formatdown-0.1.3/formatdown/inst/doc/format_powers_of_ten.R |only formatdown-0.1.3/formatdown/inst/doc/format_powers_of_ten.Rmd |only formatdown-0.1.3/formatdown/inst/doc/format_powers_of_ten.html |only formatdown-0.1.3/formatdown/inst/doc/format_units.R |only formatdown-0.1.3/formatdown/inst/doc/format_units.Rmd |only formatdown-0.1.3/formatdown/inst/doc/format_units.html |only formatdown-0.1.3/formatdown/inst/tinytest/test_format_decimal.R |only formatdown-0.1.3/formatdown/inst/tinytest/test_format_power.R |only formatdown-0.1.3/formatdown/inst/tinytest/test_format_units.R |only formatdown-0.1.3/formatdown/man/examples/examples_format_decimal.R |only formatdown-0.1.3/formatdown/man/examples/examples_format_power.R |only formatdown-0.1.3/formatdown/man/examples/examples_format_units.R |only formatdown-0.1.3/formatdown/man/format_decimal.Rd |only formatdown-0.1.3/formatdown/man/format_power.Rd |only formatdown-0.1.3/formatdown/man/format_units.Rd |only formatdown-0.1.3/formatdown/vignettes/format_integers_and_decimals.Rmd |only formatdown-0.1.3/formatdown/vignettes/format_powers_of_ten.Rmd |only formatdown-0.1.3/formatdown/vignettes/format_units.Rmd |only formatdown-0.1.4/formatdown/DESCRIPTION | 32 formatdown-0.1.4/formatdown/MD5 | 112 - 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Title: Temporal Sensory Data Analysis
Description: Analysis and visualization of data from temporal sensory methods, including for temporal check-all-that-apply (TCATA) and temporal dominance of sensations (TDS). Methods are mainly from manuscripts by Castura, J.C., Antúnez, L., Giménez, A., and Ares, G. (2016) <doi:10.1016/j.foodqual.2015.06.017>, Castura, Baker, and Ross (2016) <doi:10.1016/j.foodqual.2016.06.011>, and Pineau et al. (2009) <doi:10.1016/j.foodqual.2009.04.005>.
Author: J.C. Castura [aut, cre, ctb]
Maintainer: J.C. Castura <jcastura@compusense.com>
Diff between tempR versions 0.9.9.23 dated 2023-09-05 and 0.10.1.1 dated 2024-05-07
DESCRIPTION | 12 +++++------ MD5 | 20 +++++++++--------- R/tcata.R | 46 +++++++++++++++++++++---------------------- R/tds.R | 18 ++++++++-------- R/tempR-internal.R | 2 - R/tempr.R | 1 build/partial.rdb |binary man/plot_pca.trajectories.Rd | 4 +-- man/tcata.line.plot.Rd | 42 +++++++++++++++++++-------------------- man/tds.plot.Rd | 18 ++++++++-------- man/tempR.Rd | 1 11 files changed, 81 insertions(+), 83 deletions(-)
Title: Functions to Help in your Coding Etiquette
Description: Adds some functions to help in your coding etiquette.
'tinycodet' primarily focuses on 4 aspects.
1) Safer decimal (in)equality testing,
standard-evaluated alternatives to with() and aes(),
and other functions for safer coding.
2) A new package import system,
that attempts to combine the benefits of using a package without attaching it,
with the benefits of attaching a package.
3) Extending the string manipulation capabilities of the 'stringi' R package.
4) Reducing repetitive code.
Besides linking to 'Rcpp', 'tinycodet' has only one other dependency, namely 'stringi'.
Author: Tony Wilkes [aut, cre, cph]
Maintainer: Tony Wilkes <tony_a_wilkes@outlook.com>
Diff between tinycodet versions 0.4.6 dated 2024-04-14 and 0.5.0 dated 2024-05-07
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Title: Penalized Quantile Regression
Description: Performs penalized quantile regression with LASSO, elastic net, SCAD and MCP penalty functions including group penalties. In addition, offers a group penalty that provides consistent variable selection across quantiles. Provides a function that automatically generates lambdas and evaluates different models with cross validation or BIC, including a large p version of BIC. Below URL provides a link to a work in progress vignette.
Author: Ben Sherwood [aut, cre], Adam Maidman [aut], Shaobo Li [aut]
Maintainer: Ben Sherwood <ben.sherwood@ku.edu>
Diff between rqPen versions 4.0 dated 2024-04-18 and 4.1 dated 2024-05-07
DESCRIPTION | 8 +- MD5 | 30 +++++----- NEWS | 10 +++ R/gqCvPen.R | 37 ++++++++----- R/gqPen.R | 37 ++++++++++--- R/mainFunctions.R | 120 ++++++++++++++++++++++++++++++++----------- R/workHorse.R | 2 build/partial.rdb |binary man/qic.select.Rd | 9 ++- man/qic.select.rq.pen.seq.Rd | 2 man/rq.gq.pen.Rd | 9 +-- man/rq.gq.pen.cv.Rd | 9 ++- man/rq.group.pen.Rd | 4 - man/rq.group.pen.cv.Rd | 21 +++++-- man/rq.pen.Rd | 8 +- man/rq.pen.cv.Rd | 10 +-- 16 files changed, 221 insertions(+), 95 deletions(-)
Title: R Interface for Apache Sedona
Description: R interface for 'Apache Sedona' based on 'sparklyr'
(<https://sedona.apache.org>).
Author: Apache Sedona [aut, cre],
Jia Yu [ctb, cph],
Yitao Li [aut, cph] ,
The Apache Software Foundation [cph],
RStudio [cph]
Maintainer: Apache Sedona <private@sedona.apache.org>
Diff between apache.sedona versions 1.5.1 dated 2024-01-17 and 1.5.2 dated 2024-05-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/dependencies.R | 8 ++++---- README.md | 3 +-- 4 files changed, 11 insertions(+), 12 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Statistics: locate and tag peaks and valleys; label plot with the
equation of a fitted polynomial or other types of models; labels
with P-value, R^2 or adjusted R^2 or information criteria for fitted models;
label with ANOVA table for fitted models; label with summary for fitted
models. Model fit classes for which suitable methods are provided by package
'broom' and 'broom.mixed' are supported. Scales and stats to build volcano
and quadrant plots based on outcomes, fold changes, p-values and false
discovery rates.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Samer Mouksassi [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.5.5 dated 2023-11-15 and 0.5.6 dated 2024-05-07
DESCRIPTION | 28 MD5 | 175 - NEWS.md | 15 R/scale-continuous-Pvalue.r | 24 R/stat-correlation.R | 34 R/stat-fit-broom-tb.R | 2 R/stat-fit-broom.R | 8 R/stat-fit-deviations.R | 4 R/stat-fit-residuals.R | 4 R/stat-ma-eq.R | 20 R/stat-multcomp.R | 339 ++- R/stat-poly-eq.R | 20 R/stat-quant-band.r | 2 R/stat-quant-eq.R | 2 R/stat-quant-line.r | 2 R/use-label.R | 88 README.md | 65 build/partial.rdb |binary build/vignette.rds |binary inst/doc/model-based-annotations.R | 41 inst/doc/model-based-annotations.Rmd | 54 inst/doc/model-based-annotations.html | 965 +++++----- man/figures/README-readme-03a-1.png |binary man/figures/README-readme-03b-1.png |binary man/figures/README-unnamed-chunk-1-1.png |binary man/scale_y_Pvalue.Rd | 12 man/stat_correlation.Rd | 3 man/stat_fit_augment.Rd | 2 man/stat_ma_eq.Rd | 5 man/stat_multcomp.Rd | 96 man/stat_poly_eq.Rd | 3 man/stat_quant_band.Rd | 1 man/stat_quant_line.Rd | 1 man/use_label.Rd | 88 tests/testthat/_snaps/stat-corr/stat-coor-kendall-roundinf.svg |only tests/testthat/_snaps/stat-corr/stat-coor-pearson-round-inf.svg |only tests/testthat/_snaps/stat-corr/stat-coor-spearman-round-inf.svg |only tests/testthat/_snaps/stat-corr/stat-coor-spearman-round.svg | 2 tests/testthat/_snaps/stat-corr/stat-coor-spearman-round2.svg | 62 tests/testthat/_snaps/stat-corr/stat-correlation-kendall-exact.svg | 62 tests/testthat/_snaps/stat-corr/stat-correlation-spearman-cont.svg | 62 tests/testthat/_snaps/stat-corr/stat-correlation-spearman-exact.svg | 62 tests/testthat/_snaps/stat-corr/stat-correlation-spearman-load.svg | 62 tests/testthat/_snaps/stat-corr/stat-correlation-spearman-noload-use-label-lc.svg | 62 tests/testthat/_snaps/stat-corr/stat-correlation-spearman-noload-use-label.svg | 62 tests/testthat/_snaps/stat-corr/stat-correlation-spearman-noload.svg | 62 tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-formula-x-round-inf.svg |only tests/testthat/_snaps/stat-multcomp/stat-multcomp-bars-dunnet-many-levels.svg |only tests/testthat/_snaps/stat-multcomp/stat-multcomp-bars-dunnet.svg | 121 - 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Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Yoonkyoung Jeon [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 1.1.9 dated 2024-03-27 and 1.2.5 dated 2024-05-07
DESCRIPTION | 8 - MD5 | 30 +-- NEWS.md | 24 +++ R/CreateTableOneJS.R | 148 +++++++++---------- R/cox2.R | 20 ++ R/coxme.R | 15 + R/forestcox.R | 327 ++++++++++++++++++++++++++++++++----------- R/forestglm.R | 253 +++++++++++++++++++++++++-------- R/glmshow.R | 8 - R/lmer.R | 53 ++++++ R/svycox.R | 70 +++++++-- R/svyglm.R | 28 +++ build/vignette.rds |binary inst/doc/jstable.html | 28 +-- man/TableSubgroupCox.Rd | 5 man/TableSubgroupMultiCox.Rd | 5 16 files changed, 748 insertions(+), 274 deletions(-)
Title: Streamlined Interface to Interact with Cloud Storage Platforms
Description: A unified interface for simplifying cloud storage interactions,
including uploading, downloading, reading, and writing files, with functions
for both 'Google Drive' (<https://www.google.com/drive/>) and 'Amazon S3'
(<https://aws.amazon.com/s3/>).
Author: Iaroslav Domin [aut, cre],
Stefan Musch [aut],
Michal Czyz [aut],
Emmanuel Ugochukwu [aut],
Gradient Metrics [cph, fnd]
Maintainer: Iaroslav Domin <iaroslav@gradientmetrics.com>
Diff between cloudfs versions 0.1.2 dated 2023-10-18 and 0.1.3 dated 2024-05-07
cloudfs-0.1.2/cloudfs/man/cloud_validate_file_path.Rd |only cloudfs-0.1.3/cloudfs/DESCRIPTION | 8 ++-- cloudfs-0.1.3/cloudfs/MD5 | 35 +++++++++--------- cloudfs-0.1.3/cloudfs/NEWS.md | 7 +++ cloudfs-0.1.3/cloudfs/R/cli.R | 32 ++++++++++++++++ cloudfs-0.1.3/cloudfs/R/cloud_local.R | 14 +------ cloudfs-0.1.3/cloudfs/R/common.R | 32 ---------------- cloudfs-0.1.3/cloudfs/R/doc.R |only cloudfs-0.1.3/cloudfs/R/drive_transfer.R | 19 ++++----- cloudfs-0.1.3/cloudfs/R/drive_utils.R | 6 +-- cloudfs-0.1.3/cloudfs/R/read_write.R | 8 ++-- cloudfs-0.1.3/cloudfs/R/s3_transfer.R | 25 ++++++------ cloudfs-0.1.3/cloudfs/README.md | 5 ++ cloudfs-0.1.3/cloudfs/inst/doc/cloudfs.html | 4 +- cloudfs-0.1.3/cloudfs/man/check_path.Rd |only cloudfs-0.1.3/cloudfs/man/cloud_drive_write.Rd | 11 ++++- cloudfs-0.1.3/cloudfs/man/cloud_drive_write_bulk.Rd | 11 ++++- cloudfs-0.1.3/cloudfs/man/cloud_s3_write.Rd | 11 ++++- cloudfs-0.1.3/cloudfs/man/cloud_s3_write_bulk.Rd | 11 ++++- cloudfs-0.1.3/cloudfs/man/doc_file.Rd |only cloudfs-0.1.3/cloudfs/man/doc_local.Rd |only 21 files changed, 136 insertions(+), 103 deletions(-)
Title: Tests for Variance Homogeneity
Description: Performs 20 omnibus tests for testing the composite hypothesis of variance homogeneity.
Author: Gozde Cosar [aut],
Osman Dag [aut, cre]
Maintainer: Osman Dag <osman.dag@outlook.com>
Diff between vartest versions 1.1 dated 2024-04-05 and 1.2 dated 2024-05-07
vartest-1.1/vartest/R/siegeltukey.test.R |only vartest-1.2/vartest/DESCRIPTION | 8 ++++---- vartest-1.2/vartest/MD5 | 11 +++++------ vartest-1.2/vartest/R/cochrans.test.R | 2 ++ vartest-1.2/vartest/R/g.test.R | 5 ++++- vartest-1.2/vartest/R/mzv.test.R | 6 +++--- vartest-1.2/vartest/R/zv.test.R | 2 +- 7 files changed, 19 insertions(+), 15 deletions(-)
Title: Bayesian Network Meta-Analysis of Individual and Aggregate Data
Description: Network meta-analysis and network meta-regression models for
aggregate data, individual patient data, and mixtures of both individual
and aggregate data using multilevel network meta-regression as described by
Phillippo et al. (2020) <doi:10.1111/rssa.12579>. Models are estimated in a
Bayesian framework using 'Stan'.
Author: David M. Phillippo [aut, cre]
Maintainer: David M. Phillippo <david.phillippo@bristol.ac.uk>
Diff between multinma versions 0.6.1 dated 2024-03-05 and 0.7.0 dated 2024-05-07
DESCRIPTION | 14 MD5 | 92 NAMESPACE | 1 NEWS.md | 28 R/marginal_effects.R |only R/multinma-package.R | 3 R/nma_data-class.R | 12 R/nma_summary-class.R | 18 R/predict.R | 256 - R/stan_nma-class.R | 4 README.md | 5 build/partial.rdb |binary build/vignette.rds |binary inst/doc/example_atrial_fibrillation.html | 2102 +++++++------- inst/doc/example_bcg_vaccine.html | 640 ++-- inst/doc/example_blocker.html | 313 +- inst/doc/example_diabetes.html | 935 +++--- inst/doc/example_dietary_fat.html | 404 +- inst/doc/example_hta_psoriasis.html | 673 ++-- inst/doc/example_ndmm.html | 1311 ++++----- inst/doc/example_parkinsons.html | 1412 ++++----- inst/doc/example_plaque_psoriasis.html | 3602 ++++++++++++------------- inst/doc/example_smoking.html | 629 ++-- inst/doc/example_statins.html | 333 +- inst/doc/example_thrombolytics.html | 1018 +++---- inst/doc/example_transfusion.html | 232 - inst/doc/vignette_overview.html | 3 man/marginal_effects.Rd |only man/multinma-package.Rd | 13 man/predict.stan_nma.Rd | 34 tests/testthat/_snaps |only tests/testthat/test-example_bcg_vaccine.R | 73 tests/testthat/test-example_diabetes.R | 20 tests/testthat/test-example_dietary_fat.R | 8 tests/testthat/test-example_parkinsons.R | 16 tests/testthat/test-example_plaque_psoriasis.R | 10 tests/testthat/test-example_smoking.R | 2 tests/testthat/test-example_statins.R | 19 tests/testthat/test-marginal_effects.R |only tests/testthat/test-plot_nma_data.R |only 40 files changed, 7196 insertions(+), 7039 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Hyunki Lee [aut],
Changwoo Lim [aut],
Jinhwan Kim [aut] ,
Yoonkyoung Jeon [aut],
Jaewoong Heo [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 1.5.3 dated 2024-04-15 and 1.5.4 dated 2024-05-07
DESCRIPTION | 38 +++++++++++++++++++------------------- MD5 | 20 +++++++++++--------- NEWS.md | 38 +++++++++++++++++++++++--------------- R/FilePsInput.R | 4 ++++ R/FileRepeatedInput.R | 3 +++ R/FileSurveyInput.R | 3 +++ R/csvFileInput.R | 14 +++++++++++++- R/jsBasicGadget.R | 35 +++++------------------------------ R/utils.R |only build/vignette.rds |binary inst/doc/jsmodule.html | 4 ++-- man/mk.lev2.Rd |only 12 files changed, 83 insertions(+), 76 deletions(-)
Title: PARAFAC Analysis of Fluorescence Excitation-Emission Matrices
Description: Perform parallel factor analysis (PARAFAC: Hitchcock, 1927)
<doi:10.1002/sapm192761164> on fluorescence excitation-emission
matrices: handle scattering signal and inner filter effect, scale
the dataset, fit the model; perform split-half validation or
jack-knifing. Modified approaches such as Whittaker interpolation,
randomised split-half, and fluorescence and scattering model
estimation are also available. The package has a low dependency
footprint and has been tested on a wide range of R versions.
Author: Ivan Krylov [aut, cre],
Timur Labutin [ths],
Anastasia Drozdova [rev]
Maintainer: Ivan Krylov <ikrylov@laser.chem.msu.ru>
Diff between albatross versions 0.3-7 dated 2023-11-10 and 0.3-8 dated 2024-05-07
albatross-0.3-7/albatross/R/progress.R |only albatross-0.3-8/albatross/DESCRIPTION | 6 albatross-0.3-8/albatross/MD5 | 96 + albatross-0.3-8/albatross/NAMESPACE | 16 albatross-0.3-8/albatross/R/bootstrap.R | 88 + albatross-0.3-8/albatross/R/corcondia.R |only albatross-0.3-8/albatross/R/cubeapply.R | 67 - albatross-0.3-8/albatross/R/feem.R | 16 albatross-0.3-8/albatross/R/feemcube.R | 19 albatross-0.3-8/albatross/R/feemlist.R | 11 albatross-0.3-8/albatross/R/feemscale.R | 1 albatross-0.3-8/albatross/R/flame.R | 33 albatross-0.3-8/albatross/R/import.R | 17 albatross-0.3-8/albatross/R/jackknife.R | 24 albatross-0.3-8/albatross/R/onLoad.R |only albatross-0.3-8/albatross/R/parafac.R | 92 + albatross-0.3-8/albatross/R/parallel_callback.R |only albatross-0.3-8/albatross/R/plotgettext.R |only albatross-0.3-8/albatross/R/progress_bars.R |only albatross-0.3-8/albatross/R/splithalf.R | 107 +- albatross-0.3-8/albatross/build/albatross.pdf |binary albatross-0.3-8/albatross/build/partial.rdb |binary albatross-0.3-8/albatross/build/stage23.rdb |binary albatross-0.3-8/albatross/inst/NEWS.Rd | 72 + albatross-0.3-8/albatross/inst/REFERENCES | 15 albatross-0.3-8/albatross/inst/extdata/decimal_comma.tsv |only albatross-0.3-8/albatross/inst/po |only albatross-0.3-8/albatross/man/albatross-package.Rd | 12 albatross-0.3-8/albatross/man/cmf.Rd | 4 albatross-0.3-8/albatross/man/feem.Rd | 17 albatross-0.3-8/albatross/man/feemcorcondia.Rd |only albatross-0.3-8/albatross/man/feemflame.Rd | 10 albatross-0.3-8/albatross/man/feemjackknife.Rd | 4 albatross-0.3-8/albatross/man/feemlist.Rd | 6 albatross-0.3-8/albatross/man/feemparafac.Rd | 40 albatross-0.3-8/albatross/man/feemsplithalf.Rd | 81 + albatross-0.3-8/albatross/man/figures/feemindex.pdf |binary albatross-0.3-8/albatross/man/figures/feemindex.svg | 278 ++--- albatross-0.3-8/albatross/man/figures/scatter-widths.pdf |binary albatross-0.3-8/albatross/man/figures/scatter-widths.svg | 647 ++++++------- albatross-0.3-8/albatross/man/figures/whittaker2points.pdf |binary albatross-0.3-8/albatross/man/figures/whittaker2points.svg | 60 - albatross-0.3-8/albatross/man/marine.colours.Rd | 2 albatross-0.3-8/albatross/man/plot.feem.Rd | 10 albatross-0.3-8/albatross/man/write.openfluor.Rd | 4 albatross-0.3-8/albatross/po |only albatross-0.3-8/albatross/tests/corcondia.R |only albatross-0.3-8/albatross/tests/feemscale.R | 1 albatross-0.3-8/albatross/tests/feemscatter.R | 3 albatross-0.3-8/albatross/tests/flame.R | 5 albatross-0.3-8/albatross/tests/import.R | 17 albatross-0.3-8/albatross/tests/jackknife.R | 24 albatross-0.3-8/albatross/tests/parafac.R | 8 albatross-0.3-8/albatross/tests/splithalf.R | 46 54 files changed, 1198 insertions(+), 761 deletions(-)
Title: Tools to Support the Sheffield Elicitation Framework
Description: Implements various methods for eliciting a probability
distribution for a single parameter from an expert or a group of
experts. The expert provides a small number of probability judgements,
corresponding to points on his or her cumulative distribution
function. A range of parametric distributions can then be fitted and
displayed, with feedback provided in the form of fitted probabilities
and percentiles. For multiple experts, a weighted linear pool can be
calculated. Also includes functions for eliciting beliefs about
population distributions, eliciting multivariate distributions using a
Gaussian copula, eliciting a Dirichlet distribution, and eliciting
distributions for variance parameters in a random effects
meta-analysis model. R Shiny apps for most of the methods are
included.
Author: Jeremy Oakley
Maintainer: Jeremy Oakley <j.oakley@sheffield.ac.uk>
Diff between SHELF versions 1.9.0 dated 2023-06-07 and 1.10.0 dated 2024-05-07
SHELF-1.10.0/SHELF/DESCRIPTION | 17 SHELF-1.10.0/SHELF/MD5 | 152 - SHELF-1.10.0/SHELF/NAMESPACE | 1 SHELF-1.10.0/SHELF/R/SHELF-package.R | 75 SHELF-1.10.0/SHELF/R/cdfplot.R | 2 SHELF-1.10.0/SHELF/R/checkJudgementsValid.R |only SHELF-1.10.0/SHELF/R/compareExperts.R | 18 SHELF-1.10.0/SHELF/R/compareGroupRIO.R | 2 SHELF-1.10.0/SHELF/R/deprecatedFunctions.R |only SHELF-1.10.0/SHELF/R/elicit.R | 76 SHELF-1.10.0/SHELF/R/elicitBivariate.R | 52 SHELF-1.10.0/SHELF/R/elicitDirichlet.R | 35 SHELF-1.10.0/SHELF/R/elicitExtension.R | 69 SHELF-1.10.0/SHELF/R/elicitHeterogeneity.R | 25 SHELF-1.10.0/SHELF/R/elicitMarginalsModule.R | 18 SHELF-1.10.0/SHELF/R/elicitMixture.R | 23 SHELF-1.10.0/SHELF/R/elicitMultipleExperts.R | 1 SHELF-1.10.0/SHELF/R/expertdensity.R | 6 SHELF-1.10.0/SHELF/R/expertprobs.R | 6 SHELF-1.10.0/SHELF/R/expertquantiles.R | 6 SHELF-1.10.0/SHELF/R/feedback.R | 2 SHELF-1.10.0/SHELF/R/feedbackgroup.R | 20 SHELF-1.10.0/SHELF/R/feedbacksingle.R | 187 + SHELF-1.10.0/SHELF/R/fitDirichlet.R | 2 SHELF-1.10.0/SHELF/R/fitdist.R | 58 SHELF-1.10.0/SHELF/R/gamma.error.R | 2 SHELF-1.10.0/SHELF/R/makeCDFPlot.R | 35 SHELF-1.10.0/SHELF/R/makeQuartilePlot.R | 2 SHELF-1.10.0/SHELF/R/makeSingleExpertPlot.R | 23 SHELF-1.10.0/SHELF/R/makeTertilePlot.R | 2 SHELF-1.10.0/SHELF/R/normal.error.R | 14 SHELF-1.10.0/SHELF/R/plotQuartiles.R | 2 SHELF-1.10.0/SHELF/R/plotfit.R | 33 SHELF-1.10.0/SHELF/R/sampleFit.R | 48 SHELF-1.10.0/SHELF/build/vignette.rds |binary SHELF-1.10.0/SHELF/inst/NEWS.md | 21 SHELF-1.10.0/SHELF/inst/doc/Dirichlet-elicitation.R | 4 SHELF-1.10.0/SHELF/inst/doc/Dirichlet-elicitation.html | 50 SHELF-1.10.0/SHELF/inst/doc/Multivariate-normal-copula.R | 6 SHELF-1.10.0/SHELF/inst/doc/Multivariate-normal-copula.html | 101 - SHELF-1.10.0/SHELF/inst/doc/SHELF-overview.R | 2 SHELF-1.10.0/SHELF/inst/doc/SHELF-overview.html | 92 SHELF-1.10.0/SHELF/inst/elicitationReportFile/elicitationSummary.Rmd | 481 ---- SHELF-1.10.0/SHELF/inst/shinyAppFiles/DirichletHelp.html | 4 SHELF-1.10.0/SHELF/inst/shinyAppFiles/distributionsChild.Rmd |only SHELF-1.10.0/SHELF/inst/shinyAppFiles/elicitationShinySummary.Rmd | 561 ----- SHELF-1.10.0/SHELF/inst/shinyAppFiles/elicitationShinySummaryBivariate.Rmd | 992 --------- SHELF-1.10.0/SHELF/inst/shinyAppFiles/elicitationShinySummaryExtension.Rmd | 1003 ---------- SHELF-1.10.0/SHELF/inst/shinyAppFiles/elicitationShinySummaryExtensionUploadedYsample.Rmd | 517 ----- SHELF-1.10.0/SHELF/inst/shinyAppFiles/elicitationShinySummaryGroup.Rmd | 47 SHELF-1.10.0/SHELF/inst/shinyAppFiles/elicitationShinySummaryMixture.Rmd | 27 SHELF-1.10.0/SHELF/inst/shinyAppFiles/help.html | 4 SHELF-1.10.0/SHELF/inst/shinyAppFiles/helpBivariate.html | 4 SHELF-1.10.0/SHELF/man/SHELF-package.Rd | 74 SHELF-1.10.0/SHELF/man/compareIntervals.Rd | 10 SHELF-1.10.0/SHELF/man/elicit.Rd | 2 SHELF-1.10.0/SHELF/man/elicitBivariate.Rd | 3 SHELF-1.10.0/SHELF/man/elicitDirichlet.Rd | 3 SHELF-1.10.0/SHELF/man/fitDirichlet.Rd | 2 SHELF-1.10.0/SHELF/man/fitdist.Rd | 4 SHELF-1.10.0/SHELF/man/makeCDFPlot.Rd | 2 SHELF-1.10.0/SHELF/man/plotQuartiles.Rd | 2 SHELF-1.10.0/SHELF/man/plotfit.Rd | 8 SHELF-1.10.0/SHELF/man/sampleFit.Rd | 2 SHELF-1.10.0/SHELF/tests/testthat/_snaps |only SHELF-1.10.0/SHELF/tests/testthat/test-dirichlet.R |only SHELF-1.10.0/SHELF/tests/testthat/test-fitting.R | 97 SHELF-1.10.0/SHELF/tests/testthat/test-linearpool.R | 138 + SHELF-1.10.0/SHELF/tests/testthat/test-plots.R |only SHELF-1.9.0/SHELF/R/condDirichlet.R |only SHELF-1.9.0/SHELF/R/elicitConcProb.R |only SHELF-1.9.0/SHELF/R/elicitQuartiles.R |only SHELF-1.9.0/SHELF/R/elicitTertiles.R |only SHELF-1.9.0/SHELF/R/extractDistributions.R |only SHELF-1.9.0/SHELF/R/plotlinearpool.R |only SHELF-1.9.0/SHELF/R/plotsingle.R |only SHELF-1.9.0/SHELF/R/roulette.R |only SHELF-1.9.0/SHELF/man/condDirichlet.Rd |only SHELF-1.9.0/SHELF/man/elicitConcProb.Rd |only SHELF-1.9.0/SHELF/man/elicitQuartiles.Rd |only SHELF-1.9.0/SHELF/man/elicitTertiles.Rd |only 81 files changed, 1144 insertions(+), 4133 deletions(-)
Title: Mediation, Moderation and Moderated-Mediation After Model
Fitting
Description: Computes indirect effects, conditional effects, and conditional
indirect effects in a structural equation model or path model after model
fitting, with no need to define any user parameters or label any paths in
the model syntax, using the approach presented in Cheung and Cheung
(2023) <doi:10.3758/s13428-023-02224-z>. Can also form bootstrap
confidence intervals by doing bootstrapping only once and reusing the
bootstrap estimates in all subsequent computations. Supports bootstrap
confidence intervals for standardized (partially or completely) indirect
effects, conditional effects, and conditional indirect effects as described
in Cheung (2009) <doi:10.3758/BRM.41.2.425> and Cheung, Cheung, Lau, Hui,
and Vong (2022) <doi:10.1037/hea0001188>. Model fitting can be done by
structural equation modeling using lavaan() or regression using lm().
Author: Shu Fai Cheung [aut, cre] ,
Sing-Hang Cheung [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between manymome versions 0.1.14 dated 2024-02-16 and 0.2.1 dated 2024-05-07
DESCRIPTION | 8 MD5 | 580 - NAMESPACE | 141 NEWS.md | 569 - R/add_na.R | 34 R/all_indirect_paths.R | 623 - R/boot2est_lavaan.R | 1481 ++- R/boot2est_lm.R | 558 - R/check_path.R | 244 R/coef_cond_indirect_effects.R | 160 R/coef_delta_med.R | 120 R/coef_indirect.R | 138 R/coef_indirect_list.R | 120 R/cond_indirect.R | 2804 ++++--- R/cond_indirect_diff.R | 1072 +- R/cond_indirect_effects_math.R | 839 +- R/cond_indirect_effects_subset.R | 194 R/confint_cond_indirect_effects.R | 260 R/confint_delta_med.R | 234 R/confint_indirect.R | 226 R/confint_indirect_list.R | 206 R/dat_2_and_3.R | 1052 +- R/dat_2_med_mg.R |only R/dat_4.R | 222 R/dat_5.R | 58 R/dat_5_mg.R |only R/dat_6.R | 52 R/dat_modmed_x1m3w4y1.R | 50 R/dat_mome_demo.R | 76 R/dat_mome_demo_missing.R | 88 R/dat_sem.R | 90 R/dat_serial_parallel_latent.R | 118 R/dat_simple_mediation_latent.R | 70 R/delta_med.R | 1040 +- R/do_boot.R | 353 R/do_mc.R | 351 R/est2p.R | 112 R/factor2var.R | 148 R/find_product.R | 236 R/get_b.R | 103 R/get_indirect_effect.R | 146 R/get_intercept.R | 88 R/get_prod.R | 407 - R/index_mome.R | 860 +- R/indirect.R | 1102 +- R/indirect_proportion.R | 670 - R/lav_data_used.R | 340 R/lavaan2lm_list.R | 924 +- R/lavaan_helpers.R | 545 - R/lm2list.R | 280 R/lm2ptable.R | 122 R/lm_helpers.R | 308 R/manymome-package.R | 16 R/mc2est_lavaan.R | 402 - R/merge_mod_levels.R | 270 R/mod_levels.R | 1209 +-- R/plot_effect_vs_w.R |only R/plotmod.R | 991 +- R/plotmod_helpers.R | 318 R/plotmod_helpers_2.R | 206 R/predict_lm_list.R | 190 R/print.paths.R | 100 R/print_boot_out.R | 170 R/print_cond_indirect_effect.R | 548 - R/print_delta_med.R | 340 R/print_helpers.R | 32 R/print_indirect.R | 771 +- R/print_indirect_list.R | 792 +- R/print_lm_list.R | 70 R/print_mc_out.R | 108 R/pseudo_jn.r |only R/summary_lm_list.R | 162 R/total_indirect_effect_list.R | 206 R/wlevels_subset.R | 422 - README.md | 377 build/partial.rdb |binary build/vignette.rds |binary data/data_med_complicated_mg.rda |only data/data_med_mg.rda |only inst/CITATION | 26 inst/doc/do_boot.Rmd | 1118 +- inst/doc/do_boot.html | 506 - inst/doc/do_mc.Rmd | 692 - inst/doc/do_mc.html | 256 inst/doc/do_mc_lavaan_mi.Rmd | 628 - inst/doc/do_mc_lavaan_mi.html | 238 inst/doc/manymome.Rmd | 2348 +++--- inst/doc/manymome.html | 870 +- inst/doc/med_lav.Rmd | 1128 +- inst/doc/med_lav.html | 534 - inst/doc/med_lm.Rmd | 1650 ++-- inst/doc/med_lm.html | 906 +- inst/doc/mod_levels.Rmd | 678 - inst/doc/mod_levels.html | 476 - inst/doc/mome_lm.Rmd | 732 - inst/doc/mome_lm.html | 312 man/all_indirect_paths.Rd | 276 man/check_path.Rd | 202 man/coef.cond_indirect_diff.Rd | 64 man/coef.cond_indirect_effects.Rd | 144 man/coef.delta_med.Rd | 132 man/coef.indirect.Rd | 146 man/coef.indirect_list.Rd | 128 man/coef.indirect_proportion.Rd | 102 man/coef.lm_from_lavaan.Rd | 116 man/cond_indirect.Rd | 1382 +-- man/cond_indirect_diff.Rd | 324 man/confint.cond_indirect_diff.Rd | 90 man/confint.cond_indirect_effects.Rd | 184 man/confint.delta_med.Rd | 174 man/confint.indirect.Rd | 174 man/confint.indirect_list.Rd | 176 man/data_med.Rd | 76 man/data_med_complicated.Rd | 78 man/data_med_complicated_mg.Rd |only man/data_med_mg.Rd |only man/data_med_mod_a.Rd | 94 man/data_med_mod_ab.Rd | 114 man/data_med_mod_ab1.Rd | 104 man/data_med_mod_b.Rd | 94 man/data_med_mod_b_mod.Rd | 72 man/data_med_mod_parallel.Rd | 118 man/data_med_mod_parallel_cat.Rd | 76 man/data_med_mod_serial.Rd | 114 man/data_med_mod_serial_cat.Rd | 74 man/data_med_mod_serial_parallel.Rd | 126 man/data_med_mod_serial_parallel_cat.Rd | 80 man/data_mod.Rd | 78 man/data_mod2.Rd | 90 man/data_mod_cat.Rd | 62 man/data_mome_demo.Rd | 92 man/data_mome_demo_missing.Rd | 104 man/data_parallel.Rd | 80 man/data_sem.Rd | 108 man/data_serial.Rd | 82 man/data_serial_parallel.Rd | 90 man/data_serial_parallel_latent.Rd | 134 man/delta_med.Rd | 530 - man/do_boot.Rd | 287 man/do_mc.Rd | 302 man/factor2var.Rd | 118 man/fit2boot_out.Rd | 344 man/fit2mc_out.Rd | 210 man/get_one_cond_indirect_effect.Rd | 164 man/get_prod.Rd | 248 man/index_of_mome.Rd | 592 - man/indirect_effects_from_list.Rd | 218 man/indirect_i.Rd | 401 - man/indirect_proportion.Rd | 208 man/lm2boot_out.Rd | 290 man/lm2list.Rd | 218 man/lm_from_lavaan_list.Rd | 114 man/manymome-package.Rd | 60 man/math_indirect.Rd | 249 man/merge_mod_levels.Rd | 128 man/mod_levels.Rd | 542 - man/modmed_x1m3w4y1.Rd | 70 man/plot.cond_indirect_effects.Rd | 480 - man/plot_effect_vs_w.Rd |only man/predict.lm_from_lavaan.Rd | 126 man/predict.lm_from_lavaan_list.Rd | 144 man/predict.lm_list.Rd | 152 man/print.all_paths.Rd | 96 man/print.boot_out.Rd | 140 man/print.cond_indirect_diff.Rd | 154 man/print.cond_indirect_effects.Rd | 238 man/print.delta_med.Rd | 174 man/print.indirect.Rd | 260 man/print.indirect_list.Rd | 228 man/print.indirect_proportion.Rd | 142 man/print.lm_list.Rd | 70 man/print.mc_out.Rd | 90 man/pseudo_johnson_neyman.Rd |only man/simple_mediation_latent.Rd | 86 man/subsetting_cond_indirect_effects.Rd | 148 man/subsetting_wlevels.Rd | 212 man/summary.lm_list.Rd | 120 man/terms.lm_from_lavaan.Rd | 106 man/total_indirect_effect.Rd | 144 tests/testthat.R | 8 tests/testthat/test_all_indirect_paths.R | 494 - tests/testthat/test_all_indirect_paths_lv.R | 190 tests/testthat/test_benchmark_mc.R | 70 tests/testthat/test_boot2est.R | 168 tests/testthat/test_boot2est_implied.R | 170 tests/testthat/test_boot2est_implied_lv.R | 120 tests/testthat/test_boot2est_lv.R | 100 tests/testthat/test_check_levels.R | 102 tests/testthat/test_check_path.R | 122 tests/testthat/test_compare_boot_mc.R | 666 - tests/testthat/test_compare_boot_mc_med_lav.R | 318 tests/testthat/test_cond_indirect_diff.R | 224 tests/testthat/test_cond_indirect_effects_lavaan.R | 340 tests/testthat/test_cond_indirect_effects_lavaan_do_boot.R | 84 tests/testthat/test_cond_indirect_effects_lavaan_do_boot_missing.R | 80 tests/testthat/test_cond_indirect_effects_lavaan_kway.R | 94 tests/testthat/test_cond_indirect_effects_lavaan_kway_missing.R | 98 tests/testthat/test_cond_indirect_effects_lavaan_mi.R | 512 - tests/testthat/test_cond_indirect_effects_lavaan_missing.R | 152 tests/testthat/test_cond_indirect_effects_lavaan_wlevels.R | 92 tests/testthat/test_cond_indirect_effects_lavaan_wlevels_missing.R | 88 tests/testthat/test_cond_indirect_effects_lm.R | 186 tests/testthat/test_cond_indirect_effects_lm_binary.R | 224 tests/testthat/test_cond_indirect_effects_lm_do_boot.R | 74 tests/testthat/test_cond_indirect_effects_lm_kway.R | 96 tests/testthat/test_cond_indirect_effects_lm_wlevels.R | 100 tests/testthat/test_cond_indirect_error.R | 70 tests/testthat/test_cond_indirect_lavaan.R | 606 - tests/testthat/test_cond_indirect_lavaan_kway.R | 128 tests/testthat/test_cond_indirect_lavaan_mi.R | 115 tests/testthat/test_cond_indirect_lm.R | 396 - tests/testthat/test_cond_indirect_lm_kway.R | 114 tests/testthat/test_cond_indirect_math.R | 339 tests/testthat/test_cond_indirect_se.R | 832 +- tests/testthat/test_cond_indirect_se_print.R | 786 +- tests/testthat/test_delta_med.R | 528 - tests/testthat/test_delta_med_boot.R | 128 tests/testthat/test_delta_med_check.R | 318 tests/testthat/test_est2p.R | 54 tests/testthat/test_find_product.R | 126 tests/testthat/test_find_product_2.R | 50 tests/testthat/test_find_product_3.R |only tests/testthat/test_fit2boot_out_do_boot.R | 280 tests/testthat/test_fit2boot_out_do_boot_check_failed.R | 54 tests/testthat/test_fit2boot_out_do_boot_missing.R | 296 tests/testthat/test_fit2boot_out_do_boot_parallel.R | 162 tests/testthat/test_fit2boot_out_do_boot_parallel_mini.R | 56 tests/testthat/test_get_b.R | 54 tests/testthat/test_get_b_mi.R | 52 tests/testthat/test_get_intercept.R | 54 tests/testthat/test_get_intercept_mi.R | 54 tests/testthat/test_get_prod.R | 100 tests/testthat/test_get_prod_kway.R | 158 tests/testthat/test_get_prod_mi.R | 81 tests/testthat/test_get_vcov.R | 38 tests/testthat/test_index_mome.R | 334 tests/testthat/test_index_mome_complex_models.R | 300 tests/testthat/test_indirect.R | 214 tests/testthat/test_indirect_kway.R | 110 tests/testthat/test_indirect_missing.R | 220 tests/testthat/test_indirect_simple_med_latent.R | 126 tests/testthat/test_indirect_simple_med_latent_missing.R | 134 tests/testthat/test_indirect_simple_med_latent_observed.R | 612 - tests/testthat/test_indirect_store_computation.R | 104 tests/testthat/test_indirect_with_prods.R | 68 tests/testthat/test_jn.r |only tests/testthat/test_lav_data_used.R | 72 tests/testthat/test_lav_data_used_mi.R | 46 tests/testthat/test_lav_data_used_mi_no_means.R | 88 tests/testthat/test_lav_implied_all.R | 70 tests/testthat/test_lavaan2lm_list.R | 192 tests/testthat/test_lm2boot_out.R | 84 tests/testthat/test_lm2boot_out_parallel.R | 90 tests/testthat/test_lm2boot_out_parallel_mini.R | 66 tests/testthat/test_lm2list.R | 66 tests/testthat/test_lm2list_predict.R | 86 tests/testthat/test_lm2ptable.R | 94 tests/testthat/test_lm2ptable_indirect.R | 138 tests/testthat/test_many_indirects_do_sim_once.R |only tests/testthat/test_merge_mod_levels.R | 328 tests/testthat/test_merge_model_frame.R | 48 tests/testthat/test_mg_boot.R |only tests/testthat/test_mi_lavaan_mi_no_means.R | 158 tests/testthat/test_mi_template.R | 300 tests/testthat/test_mod_levels_lavaan.R | 230 tests/testthat/test_mod_levels_lavaan_missing.R | 188 tests/testthat/test_mod_levels_lavaan_user_values.R | 130 tests/testthat/test_mod_levels_lm.R | 190 tests/testthat/test_mod_levels_lm_user_values.R | 118 tests/testthat/test_plot_cond_indirect_effects.R | 250 tests/testthat/test_plot_indirect_vs_w.R |only tests/testthat/test_proportion.R | 146 tests/testthat/test_storing_scale_xy.R | 258 tests/testthat/test_summary_lm_list.R | 46 tests/testthat/test_wlevels_subsetting.R | 254 vignettes/articles/apa.csl | 3832 +++++----- vignettes/articles/get_prod.Rmd | 754 - vignettes/articles/manymome_cond_indirect_and_friends_workflow.Rmd | 694 - vignettes/articles/manymome_do_boot_workflow.Rmd | 418 - vignettes/articles/manymome_do_mc_workflow.Rmd | 208 vignettes/articles/manymome_draw_med_mg-1.png |only vignettes/articles/manymome_draw_mod_mg-1.png |only vignettes/articles/med_complicated-1.png |only vignettes/articles/med_mg.Rmd |only vignettes/articles/med_mg.Rmd.original |only vignettes/articles/references.bib | 13 vignettes/do_boot.Rmd | 1118 +- vignettes/do_boot.Rmd.original | 776 +- vignettes/do_mc.Rmd | 692 - vignettes/do_mc.Rmd.original | 540 - vignettes/do_mc_lavaan_mi.Rmd | 628 - vignettes/do_mc_lavaan_mi.Rmd.original | 512 - vignettes/manymome.Rmd | 2348 +++--- vignettes/manymome.Rmd.original | 1898 ++-- vignettes/med_lav.Rmd | 1128 +- vignettes/med_lav.Rmd.original | 844 +- vignettes/med_lm.Rmd | 1650 ++-- vignettes/med_lm.Rmd.original | 994 +- vignettes/mod_levels.Rmd | 678 - vignettes/mome_lm.Rmd | 732 - vignettes/mome_lm.Rmd.original | 566 - 301 files changed, 48063 insertions(+), 45896 deletions(-)
Title: 'DT' Extension for CRUD (Create, Read, Update, Delete)
Applications in 'shiny'
Description: The core of this package is a function eDT() which enhances DT::datatable() such that it can be used to interactively modify data in 'shiny'. By the use of generic 'dplyr' methods it supports many types of data storage, with relational databases ('dbplyr') being the main use case.
Author: Jasper Schelfhout [aut, cre],
Maxim Nazarov [rev],
Daan Seynaeve [rev],
Lennart Tuijnder [rev]
Maintainer: Jasper Schelfhout <jasper.schelfhout@openanalytics.eu>
Diff between editbl versions 1.0.3 dated 2024-01-10 and 1.0.4 dated 2024-05-07
editbl-1.0.3/editbl/man/isMissing.Rd |only editbl-1.0.4/editbl/DESCRIPTION | 16 +++++++---- editbl-1.0.4/editbl/MD5 | 34 ++++++++++++++++-------- editbl-1.0.4/editbl/R/eDT.R | 10 +++---- editbl-1.0.4/editbl/R/foreignTbl.R | 5 ++- editbl-1.0.4/editbl/R/shinyInput.R | 10 ++++--- editbl-1.0.4/editbl/R/utils.R | 23 ---------------- editbl-1.0.4/editbl/README.md | 20 ++++---------- editbl-1.0.4/editbl/build |only editbl-1.0.4/editbl/inst/NEWS | 4 ++ editbl-1.0.4/editbl/inst/doc |only editbl-1.0.4/editbl/man/eDT.Rd | 2 - editbl-1.0.4/editbl/man/foreignTbl.Rd | 4 ++ editbl-1.0.4/editbl/tests/testthat/test-utils.R | 10 ------- editbl-1.0.4/editbl/vignettes |only 15 files changed, 64 insertions(+), 74 deletions(-)
Title: A Toolbox for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsaf' R-package includes a 'shiny' based interface for an easy application of
the 'cmsafops' and 'cmsafvis' packages - the CM SAF R Toolbox. The Toolbox offers an
easy way to prepare, manipulate, analyse and visualize CM SAF NetCDF formatted data.
Other CF conform NetCDF data with time, longitude and latitude dimension should be
applicable, but there is no guarantee for an error-free application.
CM SAF climate data records are provided for free via (<https://wui.cm [...truncated...]
Author: Steffen Kothe [aut, cre],
Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsaf versions 3.5.0 dated 2023-09-15 and 3.5.1 dated 2024-05-07
DESCRIPTION | 10 MD5 | 32 NAMESPACE | 10 NEWS.md | 163 R/cmsaf.R | 56 R/get_grid.R | 8 R/release_questions.R | 36 R/run_toolbox.R | 42 inst/WORDLIST | 77 inst/toolbox/ColorspacePrivates.R | 1260 +-- inst/toolbox/global.R | 706 - inst/toolbox/server.R |15224 +++++++++++++++++++------------------- inst/toolbox/ui.R | 1548 +-- inst/toolbox/www/style.css | 532 - man/run_toolbox.Rd | 36 tests/spelling.R | 6 tests/spelling.Rout.save | 50 17 files changed, 9907 insertions(+), 9889 deletions(-)
Title: Response Adaptive Randomization with 'Frequentist' Approaches
Description: Provides functions and command-line user interface to generate allocation sequence
by response-adaptive randomization for clinical trials. The package currently supports
two families of frequentist response-adaptive randomization procedures, Doubly Adaptive
Biased Coin Design ('DBCD') and Sequential Estimation-adjusted Urn Model ('SEU'), for
binary and normal endpoints. One-sided proportion (or mean) difference and Chi-square
(or 'ANOVA') hypothesis testing methods are also available in the package to facilitate
the inference for treatment effect. Additionally, the package provides comprehensive and
efficient tools to allow one to evaluate and compare the performance of randomization
procedures and tests based on various criteria. For example, plots for relationship among
assumed treatment effects, sample size, and power are provided. Five allocation functions
for 'DBCD' and six addition rule functions for 'SEU' are implemented to target allocations
such as 'Neyman', 'Rosenberger' R [...truncated...]
Author: Mengjia Yu [aut],
Xiu Huang [aut, cre],
Li Wang [aut],
Hongjian Zhu [aut]
Maintainer: Xiu Huang <xiu.huang@aya.yale.edu>
Diff between RARfreq versions 0.1.4 dated 2023-04-04 and 0.1.5 dated 2024-05-07
DESCRIPTION | 11 LICENSE | 4 MD5 | 90 +- NAMESPACE | 62 - R/DBCD_BINARY.R | 144 ++-- R/DBCD_BINARY_raw.R | 154 ++-- R/DBCD_GAUSSIAN.R | 146 ++-- R/DBCD_GAUSSIAN_raw.R | 152 ++-- R/SEU_BINARY_raw.R | 160 ++--- R/SEU_GAUSSIAN_raw.R | 150 ++-- R/SEU_power_comparison_Power_vs_Trt.R | 522 ++++++++-------- R/SEU_power_comparison_Power_vs_Trt_GAUSSIAN.R | 444 +++++++------- R/SEU_power_comparison_Power_vs_n.R | 688 +++++++++++----------- R/SEU_power_comparison_Power_vs_n_GAUSSIAN.R | 684 ++++++++++----------- R/SEU_simulation_main.R | 400 ++++++------ R/SEU_simulation_main_GAUSSIAN.R | 436 ++++++------- R/power_comparison_Power_vs_Trt.R | 502 ++++++++-------- R/power_comparison_Power_vs_Trt_GAUSSIAN.R | 446 +++++++------- R/power_comparison_Power_vs_n.R | 664 ++++++++++----------- R/power_comparison_Power_vs_n_GAUSSIAN.R | 666 ++++++++++----------- R/simulation_main.R | 350 +++++------ R/simulation_main_GAUSSIAN.R | 386 ++++++------ R/utils.R | 264 ++++---- R/utils_SEU.R | 480 +++++++-------- README.md | 71 +- build/partial.rdb |binary inst/REFERENCES.bib | 114 +-- man/DBCD_BINARY.Rd | 118 +-- man/DBCD_BINARY_raw.Rd | 110 +-- man/DBCD_GAUSSIAN.Rd | 120 +-- man/DBCD_GAUSSIAN_raw.Rd | 98 +-- man/SEU_power_comparison_Power_vs_Trt.Rd | 182 ++--- man/SEU_power_comparison_Power_vs_Trt_GAUSSIAN.Rd | 186 ++--- man/SEU_power_comparison_Power_vs_n.Rd | 196 +++--- man/SEU_power_comparison_Power_vs_n_GAUSSIAN.Rd | 204 +++--- man/SEU_simulation_main.Rd | 182 ++--- man/SEU_simulation_main_GAUSSIAN.Rd | 202 +++--- man/power_comparison_Power_vs_Trt.Rd | 162 ++--- man/power_comparison_Power_vs_Trt_GAUSSIAN.Rd | 176 ++--- man/power_comparison_Power_vs_n.Rd | 176 ++--- man/power_comparison_Power_vs_n_GAUSSIAN.Rd | 186 ++--- man/simulation_main.Rd | 164 ++--- man/simulation_main_GAUSSIAN.Rd | 182 ++--- tests/spelling.R | 6 tests/testthat.R | 24 tests/testthat/test-test.R | 6 46 files changed, 5434 insertions(+), 5436 deletions(-)
Title: Smoothing Long-Memory Time Series
Description: The nonparametric trend and its derivatives in equidistant time
series (TS) with long-memory errors can be estimated. The
estimation is conducted via local polynomial regression using an
automatically selected bandwidth obtained by a built-in iterative plug-in
algorithm or a bandwidth fixed by the user.
The smoothing methods of the package are described in Letmathe, S., Beran,
J. and Feng, Y., (2023) <doi:10.1080/03610926.2023.2276049>.
Author: Yuanhua Feng [aut] ,
Jan Beran [aut] ,
Sebastian Letmathe [aut] ,
Dominik Schulz [aut, cre]
Maintainer: Dominik Schulz <dominik.schulz@uni-paderborn.de>
Diff between esemifar versions 2.0.0 dated 2024-05-02 and 2.0.1 dated 2024-05-07
DESCRIPTION | 8 MD5 | 47 ++--- NEWS.md | 11 + R/dsmoothlm.R | 7 R/esemifar.R | 9 R/forecasts.R | 8 R/gsmooth_import_smoots.R | 2 R/tsmoothlm.R | 8 README.md | 98 ++++++++-- man/arma_to_ar.Rd | 86 ++++----- man/arma_to_ma.Rd | 86 ++++----- man/d_to_coef.Rd | 90 ++++----- man/dsmoothlm.Rd | 7 man/esemifar.Rd | 9 man/farima_to_ar.Rd | 94 +++++----- man/farima_to_ma.Rd | 94 +++++----- man/figures/README-plot1-1.png |binary man/figures/README-plot1-2.png |binary man/figures/README-plot2-1.png |only man/gsmooth.Rd | 370 ++++++++++++++++++++--------------------- man/plot.esemifar_fc.Rd | 92 +++++----- man/tsmoothlm.Rd | 7 src/Forecast.cpp | 2 src/FutureObs.cpp | 2 src/RcppExports.cpp | 8 25 files changed, 618 insertions(+), 527 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-04 1.3.0
2023-08-16 1.2.0
2023-03-08 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-22 0.2.5
2024-03-19 0.2.4
Title: Collect And Investigate Street Views For Urban Science
Description: A collection of functions to search and download street view imagery
('Mapilary' <https://www.mapillary.com/developer/api-documentation>) and
to extract, quantify, and visualize visual features. Moreover, there are
functions provided to generate Qualtrics survey in TXT format using
the collection of street views for various research purposes.
Author: Xiaohao Yang [aut, cre, cph],
Derek Van Berkel [aut],
Mark Lindquist [aut]
Maintainer: Xiaohao Yang <xiaohaoy@umich.edu>
Diff between streetscape versions 1.0.0 dated 2024-05-03 and 1.0.1 dated 2024-05-07
DESCRIPTION | 6 +-- MD5 | 12 +++--- R/StreetscapeDataFrame.R | 51 ++++++++++++++++++++++----- R/str_view_search.R | 88 ++++++++++++++++++++++++++--------------------- R/utils.R | 33 +++++++++++++---- data/scdataframe.RData |binary man/Streetscape-class.Rd | 16 +++++++- 7 files changed, 141 insertions(+), 65 deletions(-)
Title: R Interface to 'IGN' Web Services
Description: Automatic open data acquisition from resources of IGN
('Institut National de Information Geographique et forestiere')
(<https://www.ign.fr/>). Available datasets include various types of
raster and vector data, such as digital elevation models, state
borders, spatial databases, cadastral parcels, and more. There also
access to point clouds data ('LIDAR') and specifics API
(<https://apicarto.ign.fr/api/doc/>).
Author: Paul Carteron [aut, cre]
Maintainer: Paul Carteron <carteronpaul@gmail.com>
Diff between happign versions 0.2.2 dated 2023-11-29 and 0.3.0 dated 2024-05-07
happign-0.2.2/happign/inst/doc/SCAN_25_SCAN_100_SCAN_OACI.R |only happign-0.2.2/happign/inst/doc/SCAN_25_SCAN_100_SCAN_OACI.Rmd |only happign-0.2.2/happign/inst/doc/SCAN_25_SCAN_100_SCAN_OACI.html |only happign-0.2.2/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v1-b814e7.R |only happign-0.2.2/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-0b352a.R |only happign-0.2.2/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-2a3af1.R |only happign-0.2.2/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-4f2bf7.R |only happign-0.2.2/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-9a095b.R |only happign-0.2.2/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-e397b2.R |only happign-0.2.2/happign/tests/testthat/get_layers_metada_null |only happign-0.2.2/happign/tests/testthat/get_layers_metada_wfs/wxs.ign.fr |only happign-0.2.2/happign/tests/testthat/get_layers_metada_wms/wxs.ign.fr |only happign-0.2.2/happign/tests/testthat/get_layers_metada_wmts/wxs.ign.fr |only happign-0.2.2/happign/tests/testthat/get_wfs_default_crs/wxs.ign.fr |only happign-0.2.2/happign/tests/testthat/test-get_wms_raster_utils.R |only happign-0.2.2/happign/tests/testthat/wfs_ecql_filter/wxs.ign.fr |only happign-0.2.2/happign/tests/testthat/wfs_empty/wxs.ign.fr |only happign-0.2.2/happign/tests/testthat/wfs_intersect/wxs.ign.fr |only happign-0.2.2/happign/vignettes/Getting_started-unnamed-chunk-6-1.png |only happign-0.2.2/happign/vignettes/Getting_started-unnamed-chunk-7-1.png |only happign-0.2.2/happign/vignettes/Getting_started-unnamed-chunk-8-1.png |only happign-0.2.2/happign/vignettes/SCAN25.tif |only happign-0.2.2/happign/vignettes/SCAN_25_SCAN_100_SCAN_OACI.Rmd |only happign-0.3.0/happign/DESCRIPTION | 12 happign-0.3.0/happign/MD5 | 135 +-- happign-0.3.0/happign/NAMESPACE | 138 +-- happign-0.3.0/happign/NEWS.md | 20 happign-0.3.0/happign/R/data.R | 2 happign-0.3.0/happign/R/get_layers_metadata.R | 113 +-- happign-0.3.0/happign/R/get_location_info.R | 6 happign-0.3.0/happign/R/get_wfs.R | 74 -- happign-0.3.0/happign/R/get_wfs_attributes.R | 19 happign-0.3.0/happign/R/get_wms_raster.R | 347 ++++------ happign-0.3.0/happign/R/get_wmts.R | 52 - happign-0.3.0/happign/R/utils.R | 14 happign-0.3.0/happign/README.md | 3 happign-0.3.0/happign/build/vignette.rds |binary happign-0.3.0/happign/inst/doc/Getting_started.Rmd | 189 +++-- happign-0.3.0/happign/inst/doc/Getting_started.html | 272 ++++--- happign-0.3.0/happign/man/are_queryable.Rd | 42 - happign-0.3.0/happign/man/cog_2023.Rd | 54 - happign-0.3.0/happign/man/get_apicarto_cadastre.Rd | 212 +++--- happign-0.3.0/happign/man/get_apicarto_codes_postaux.Rd | 58 - happign-0.3.0/happign/man/get_apicarto_gpu.Rd | 178 ++--- happign-0.3.0/happign/man/get_apicarto_rpg.Rd | 136 +-- happign-0.3.0/happign/man/get_apicarto_viticole.Rd | 76 +- happign-0.3.0/happign/man/get_apikeys.Rd | 52 - happign-0.3.0/happign/man/get_last_news.Rd | 42 - happign-0.3.0/happign/man/get_layers_metadata.Rd | 91 +- happign-0.3.0/happign/man/get_location_info.Rd | 124 +-- happign-0.3.0/happign/man/get_raw_lidar.Rd | 104 +- happign-0.3.0/happign/man/get_wfs.Rd | 222 ++---- happign-0.3.0/happign/man/get_wfs_attributes.Rd | 66 - happign-0.3.0/happign/man/get_wms_raster.Rd | 207 ++--- happign-0.3.0/happign/man/get_wmts.Rd | 140 ++-- happign-0.3.0/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v1-c0ba08.R |only happign-0.3.0/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-5df1f9.R |only happign-0.3.0/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-83136d.R |only happign-0.3.0/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-a9a80f.R |only happign-0.3.0/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-bedfcd.R |only happign-0.3.0/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-fbf477.R |only happign-0.3.0/happign/tests/testthat/get_layers_metada_wfs/data.geopf.fr |only happign-0.3.0/happign/tests/testthat/get_layers_metada_wms/data.geopf.fr |only happign-0.3.0/happign/tests/testthat/get_layers_metada_wmts/data.geopf.fr |only happign-0.3.0/happign/tests/testthat/get_wfs_default_crs/data.geopf.fr |only happign-0.3.0/happign/tests/testthat/test-get_apicarto_rpg.R | 12 happign-0.3.0/happign/tests/testthat/test-get_layers_metadata.R | 26 happign-0.3.0/happign/tests/testthat/test-get_wfs.R | 29 happign-0.3.0/happign/tests/testthat/test-get_wms_raster.R | 46 - happign-0.3.0/happign/tests/testthat/test-utils.R | 17 happign-0.3.0/happign/tests/testthat/wfs_ecql_filter/data.geopf.fr |only happign-0.3.0/happign/tests/testthat/wfs_empty/data.geopf.fr |only happign-0.3.0/happign/tests/testthat/wfs_intersect/data.geopf.fr |only happign-0.3.0/happign/vignettes/Getting_started.Rmd | 189 +++-- happign-0.3.0/happign/vignettes/Getting_started.Rmd.orig | 90 +- happign-0.3.0/happign/vignettes/unnamed-chunk-5-1.png |only happign-0.3.0/happign/vignettes/unnamed-chunk-6-1.png |only happign-0.3.0/happign/vignettes/unnamed-chunk-7-1.png |only happign-0.3.0/happign/vignettes/unnamed-chunk-8-1.png |only happign-0.3.0/happign/vignettes/web_only/api_carto.Rmd | 11 happign-0.3.0/happign/vignettes/web_only/happign_for_foresters.Rmd | 65 - 81 files changed, 1904 insertions(+), 1781 deletions(-)
Title: A Convenient R Interface with the OpenAI 'ChatGPT' API
Description: A convenient interface with the OpenAI 'ChatGPT' API <https://openai.com/api>. 'gptr' allows you to interact with 'ChatGPT', a powerful language model, for various natural language processing tasks. The 'gptr' R package makes talking to 'ChatGPT' in R super easy. It helps researchers and data folks by simplifying the complicated stuff, like asking questions and getting answers. With 'gptr', you can use 'ChatGPT' in R without any hassle, making it simpler for everyone to do cool things with language!
Author: Wanjun Gu [aut, cre]
Maintainer: Wanjun Gu <wanjun.gu@ucsf.edu>
Diff between gptr versions 0.5.0 dated 2024-05-06 and 0.6.0 dated 2024-05-07
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Functions and Utilities for Jordan
Description: Provides core functions and utilities for packages and other code
developed by Jordan Mark Barbone.
Author: Jordan Mark Barbone [aut, cph, cre]
Maintainer: Jordan Mark Barbone <jmbarbone@gmail.com>
Diff between fuj versions 0.1.4 dated 2023-10-22 and 0.2.0 dated 2024-05-07
DESCRIPTION | 10 +-- MD5 | 57 +++++++++++++--------- NAMESPACE | 9 +++ NEWS.md | 41 ++++++++++++++++ R/colons.R | 24 +++++++-- R/data-frame.R | 2 R/fs.R |only R/fuj-package.R |only R/if-null.R | 14 +++-- R/include.R |only R/list.R | 29 +++-------- R/match.R | 2 R/namespace.R | 79 ++++++++++++++++++++++++++++--- R/paste.R | 3 - R/struct.R | 6 +- R/utils.R |only R/verbose.R | 101 +++++++++++++++++++++++++++++++++++----- inst/WORDLIST | 2 man/fp.Rd |only man/fuj-package.Rd |only man/if_null.Rd | 5 + man/include.Rd |only man/list0.Rd | 6 ++ man/op.fuj.Rd |only man/require_namespace.Rd | 2 man/verbose.Rd | 38 +++++++++++++-- tests/testthat/_snaps |only tests/testthat/include-name.R |only tests/testthat/include.R |only tests/testthat/test-colons.R | 8 +-- tests/testthat/test-fs.R |only tests/testthat/test-include.R |only tests/testthat/test-match.R | 8 +-- tests/testthat/test-namespace.R | 13 +++-- tests/testthat/test-os.R | 4 + tests/testthat/test-verbose.R | 91 ++++++++++++++++++++++++++++-------- 36 files changed, 434 insertions(+), 120 deletions(-)
Title: Simple Functions to Save Time and Memory
Description: Fast and memory-efficient (or 'cheap') tools to facilitate
efficient programming, saving time and memory. It aims to provide
'cheaper' alternatives to common base R functions, as well as some
additional functions.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between cheapr versions 0.9.0 dated 2024-04-22 and 0.9.1 dated 2024-05-07
cheapr-0.9.0/cheapr/man/lag_.Rd |only cheapr-0.9.1/cheapr/DESCRIPTION | 10 cheapr-0.9.1/cheapr/MD5 | 51 +- cheapr-0.9.1/cheapr/NAMESPACE | 6 cheapr-0.9.1/cheapr/NEWS.md | 19 cheapr-0.9.1/cheapr/R/cpp11.R | 20 cheapr-0.9.1/cheapr/R/extras.R | 14 cheapr-0.9.1/cheapr/R/lag.R | 176 +++++++ cheapr-0.9.1/cheapr/R/recycle.R |only cheapr-0.9.1/cheapr/R/set_math.R | 1 cheapr-0.9.1/cheapr/R/sset.R | 29 - cheapr-0.9.1/cheapr/R/utils.R | 116 +++-- cheapr-0.9.1/cheapr/R/zzz.R | 41 - cheapr-0.9.1/cheapr/README.md | 229 +++++----- cheapr-0.9.1/cheapr/man/extras.Rd | 15 cheapr-0.9.1/cheapr/man/lag.Rd |only cheapr-0.9.1/cheapr/man/recycle.Rd |only cheapr-0.9.1/cheapr/man/set_math.Rd | 1 cheapr-0.9.1/cheapr/src/altrep_utils.cpp |only cheapr-0.9.1/cheapr/src/cheapr_cpp.h | 4 cheapr-0.9.1/cheapr/src/cpp11.cpp | 44 + cheapr-0.9.1/cheapr/src/gcd.cpp | 9 cheapr-0.9.1/cheapr/src/lag.cpp | 473 +++++++++++++++++++-- cheapr-0.9.1/cheapr/src/nas.cpp | 93 +--- cheapr-0.9.1/cheapr/src/set_math.cpp | 258 +++++++---- cheapr-0.9.1/cheapr/src/sset.cpp | 76 --- cheapr-0.9.1/cheapr/src/utils.cpp | 8 cheapr-0.9.1/cheapr/tests/testthat/test-lag.R | 186 ++++++++ cheapr-0.9.1/cheapr/tests/testthat/test-set_math.R | 74 +-- 29 files changed, 1382 insertions(+), 571 deletions(-)
Title: Acceptance-Rejection Method for Generating Pseudo-Random
Observations
Description: Provides a function that implements the acceptance-rejection method in an optimized manner to generate pseudo-random observations for discrete or continuous random variables. Proposed by von Neumann J. (1951), <https://mcnp.lanl.gov/pdf_files/>, the function is optimized to work in parallel on Unix-based operating systems and performs well on Windows systems. The acceptance-rejection method implemented optimizes the probability of generating observations from the desired random variable, by simply providing the probability function or probability density function, in the discrete and continuous cases, respectively. Implementation is based on references CASELLA, George at al. (2004) <https://www.jstor.org/stable/4356322>, NEAL, Radford M. (2003) <https://www.jstor.org/stable/3448413> and Bishop, Christopher M. (2006, ISBN: 978-0387310732).
Author: Pedro Rafael D. Marinho [aut, cre]
,
Vera Lucia Damasceno Tomazella [ctb]
Maintainer: Pedro Rafael D. Marinho <pedro.rafael.marinho@gmail.com>
Diff between AcceptReject versions 0.1.1 dated 2024-04-24 and 0.1.2 dated 2024-05-07
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