Title: White Matter Normalization for Magnetic Resonance Images
Description: Shinohara (2014) <doi:10.1016/j.nicl.2014.08.008>
introduced 'WhiteStripe', an intensity-based normalization of T1
and T2 images, where normal
appearing white matter performs well, but requires segmentation.
This method performs white matter mean and standard deviation
estimates on data that has been rigidly-registered to the 'MNI'
template and uses histogram-based methods.
Author: R. Taki Shinohara [aut],
John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between WhiteStripe versions 2.4.2 dated 2022-08-30 and 2.4.3 dated 2024-05-09
DESCRIPTION | 7 - MD5 | 16 +-- NEWS.md | 4 R/smooth_hist.R | 2 build/vignette.rds |binary inst/doc/Running_WhiteStripe.html | 180 +++++++++++++++++++------------------- man/get.deriv.smooth.hist.Rd | 2 man/t1.voi.hist.Rd | 22 ++-- man/whitestripe_ind_to_mask.Rd | 19 ++-- 9 files changed, 131 insertions(+), 121 deletions(-)
Title: Group Sequential Designs of Multi-Arm Multi-Stage Trials
Description: It provides functions to generate operating characteristics and to calculate Sequential Conditional Probability Ratio Tests(SCPRT) efficacy and futility boundary values along with sample/event size of Multi-Arm Multi-Stage(MAMS) trials for different outcomes. The package is based on Jianrong Wu, Yimei Li, Liang Zhu (2023) <doi:10.1002/sim.9682>, Jianrong Wu, Yimei Li (2023) "Group Sequential Multi-Arm Multi-Stage Survival Trial Design with Treatment Selection"(Manuscript accepted for publication) and Jianrong Wu, Yimei Li, Shengping Yang (2023) "Group Sequential Multi-Arm Multi-Stage Trial Design with Ordinal Endpoints"(In preparation).
Author: Tushar Patni [aut, cre],
Yimei Li [aut],
Jianrong Wu [aut]
Maintainer: Tushar Patni <tushar.patni006@gmail.com>
Diff between gsMAMS versions 0.7.1 dated 2023-05-04 and 0.7.2 dated 2024-05-09
DESCRIPTION | 13 MD5 | 56 +- NAMESPACE | 26 - NEWS.md |only R/design_cont.R | 64 +-- R/design_ord.R | 79 +-- R/design_surv.R | 82 ++- R/logranktest.R | 63 +- R/op_fwer_cont.R | 424 +++++++++----------- R/op_fwer_ord.R | 540 ++++++++++++------------- R/op_fwer_surv.R | 507 ++++++++++++----------- R/op_power_cont.R | 550 ++++++++++++-------------- R/op_power_ord.R | 633 ++++++++++++++--------------- R/op_power_surv.R | 534 ++++++++++++------------- R/scprt.R | 65 +-- R/size_cont.R | 103 ++-- R/size_ord.R | 97 ++-- R/size_surv.R | 1078 ++++++++++++++++++++++++++++----------------------- build |only inst |only man/design_cont.Rd | 60 +- man/design_ord.Rd | 70 +-- man/design_surv.Rd | 90 ++-- man/op_fwer_cont.Rd | 68 +-- man/op_fwer_ord.Rd | 80 ++- man/op_fwer_surv.Rd | 128 +++--- man/op_power_cont.Rd | 75 +-- man/op_power_ord.Rd | 80 ++- man/op_power_surv.Rd | 128 +++--- vignettes |only 30 files changed, 2912 insertions(+), 2781 deletions(-)
Title: Extensions for 'Flextable'
Description: Build display tables easily by extending the functionality of the
'flextable' package. Features include spanning header, grouping rows,
parsing markdown and so on.
Author: Atsushi Yasumoto [aut, cph, cre]
,
David Gohel [ctb],
Romain Francois [ctb] ,
Tatsuya Shima [ctb]
Maintainer: Atsushi Yasumoto <atusy.rpkg@gmail.com>
Diff between ftExtra versions 0.6.3 dated 2024-04-02 and 0.6.4 dated 2024-05-09
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/as-paragraph-md.R | 2 +- R/footnote.R | 2 +- R/md2df.R | 2 +- inst/doc/format_columns.html | 38 +++++++++++++++++++------------------- inst/doc/group-rows.html | 14 +++++++------- inst/doc/transform-headers.html | 8 ++++---- 9 files changed, 51 insertions(+), 46 deletions(-)
Title: Computation of Optimal Transport Plans and Wasserstein Distances
Description: Solve optimal transport problems. Compute Wasserstein distances (a.k.a. Kantorovitch, Fortet--Mourier, Mallows, Earth Mover's, or minimal L_p distances), return the corresponding transference plans, and display them graphically. Objects that can be compared include grey-scale images, (weighted) point patterns, and mass vectors.
Author: Dominic Schuhmacher [aut, cre],
Bjoern Baehre [aut] ,
Nicolas Bonneel [aut] ,
Carsten Gottschlich [aut] ,
Valentin Hartmann [aut] ,
Florian Heinemann [aut] ,
Bernhard Schmitzer [aut] ,
Joern Schrieber [aut] ,
Timo Wilm [ctb]
Maintainer: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>
Diff between transport versions 0.15-0 dated 2024-03-26 and 0.15-2 dated 2024-05-09
DESCRIPTION | 10 - MD5 | 41 ++--- NAMESPACE | 19 -- NEWS | 31 +++ R/RcppExports.R | 8 + R/aha.R | 38 +--- R/fix_odd.R | 2 R/fundament.R | 326 ++++++++++++++---------------------------- R/lilhelpers.R | 165 +++++++-------------- R/plot_apollonius.R | 1 R/shielding.R | 8 - R/transport1d.R | 8 - R/unbalanced.R | 46 +++-- R/unbalanced_wpp.R | 39 ++--- README.md |only build/partial.rdb |binary inst/CITATION | 12 - src/RcppExports.cpp | 24 +++ src/gen_cost.cpp | 54 ++++++ src/transport_init.c | 4 tests/testthat/_snaps/main.md | 40 ++--- tests/testthat/test-main.R | 30 +++ 22 files changed, 441 insertions(+), 465 deletions(-)
Title: Analysis of Images in Experiments
Description: Tools created for image analysis in researches. There are functions associated with image editing, segmentation, and obtaining biometric measurements (Este pacote foi idealizado para para a analise de imagens em pesquisas. Ha funcoes associadas a edicao de imagens, segmentacao, e obtencao de medidas biometricas) <https://www.expstat.com/pacotes-do-r/expimage>.
Author: Alcinei Mistico Azevedo [aut, cre]
Maintainer: Alcinei Mistico Azevedo <alcineimistico@hotmail.com>
Diff between ExpImage versions 0.10.0 dated 2024-05-03 and 0.10.1 dated 2024-05-09
DESCRIPTION | 6 MD5 | 34 ++-- NEWS.md | 4 inst/doc/Comprimento_Plantula.html | 6 inst/doc/Contagem_de_bovinos.html | 8 inst/doc/Contagem_de_objetos.R | 5 inst/doc/Contagem_de_objetos.Rmd | 5 inst/doc/Contagem_de_objetos.html | 42 ++--- inst/doc/Edicao_de_imagens.R | 10 - inst/doc/Edicao_de_imagens.Rmd | 10 - inst/doc/Edicao_de_imagens.html | 89 +++++------ inst/doc/Estimacao_Area_Foliar.R | 2 inst/doc/Estimacao_Area_Foliar.Rmd | 2 inst/doc/Estimacao_Area_Foliar.html | 275 ++++++++++++++++------------------ inst/doc/Estimar_doenca_Amendoim.html | 4 vignettes/Contagem_de_objetos.Rmd | 5 vignettes/Edicao_de_imagens.Rmd | 10 - vignettes/Estimacao_Area_Foliar.Rmd | 2 18 files changed, 255 insertions(+), 264 deletions(-)
Title: Load Data for Analysis System
Description: Provides a framework to load text and excel files through a 'shiny' graphical interface. It allows renaming, transforming, ordering and removing variables. It includes basic exploratory methods such as the mean, median, mode, normality test, histogram and correlation.
Author: Oldemar Rodriguez [aut, cre],
Diego Jimenez [aut],
Joseline Quiros [aut]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between loadeR versions 1.1.8 dated 2024-02-08 and 1.2.0 dated 2024-05-09
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 8 ++++++++ R/loadeR.R | 4 ++-- R/mod_acercade.R | 2 +- R/mod_carga_datos.R | 15 +++++++++++++++ inst/golem-config.yml | 2 +- man/loadeR.Rd | 4 ++-- 8 files changed, 39 insertions(+), 16 deletions(-)
Title: High-Level Functions for Tabulating, Charting and Reporting
Survey Data
Description: Craft polished tables and plots in Markdown reports.
Simply choose whether to treat your data as counts or metrics,
and the package will automatically generate well-designed default tables and plots for you.
Boiled down to the basics, with labeling features and simple interactive reports.
All functions are 'tidyverse' compatible.
Author: Jakob Juenger [aut, cre, cph] ,
Henrieke Kotthoff [aut, ctb],
Chantal Gaertner [ctb]
Maintainer: Jakob Juenger <jakob.juenger@uni-muenster.de>
Diff between volker versions 1.0.2 dated 2024-02-22 and 2.0.0 dated 2024-05-09
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Title: Satellite Image Time Series Analysis for Earth Observation Data
Cubes
Description: An end-to-end toolkit for land use and land cover classification
using big Earth observation data, based on machine learning methods
applied to satellite image data cubes, as described in Simoes et al (2021) <doi:10.3390/rs13132428>.
Builds regular data cubes from collections in AWS, Microsoft Planetary Computer,
Brazil Data Cube, and Digital Earth Africa using the Spatio-temporal Asset Catalog (STAC)
protocol (<https://stacspec.org/> and the 'gdalcubes' R package
developed by Appel and Pebesma (2019) <doi:10.3390/data4030092>.
Supports visualization methods for images and time series and
smoothing filters for dealing with noisy time series.
Includes functions for quality assessment of training samples using self-organized maps
as presented by Santos et al (2021) <doi:10.1016/j.isprsjprs.2021.04.014>.
Provides machine learning methods including support vector machines,
random forests, extreme gradient boosting, multi-layer perceptrons,
temporal convolutional neu [...truncated...]
Author: Rolf Simoes [aut],
Gilberto Camara [aut, cre],
Felipe Souza [aut],
Lorena Santos [aut],
Pedro Andrade [aut],
Karine Ferreira [aut],
Alber Sanchez [aut],
Gilberto Queiroz [aut]
Maintainer: Gilberto Camara <gilberto.camara.inpe@gmail.com>
Diff between sits versions 1.4.2-1 dated 2023-11-02 and 1.5.0 dated 2024-05-09
sits-1.4.2-1/sits/R/api_imputation.R |only sits-1.4.2-1/sits/inst/extdata/segment |only sits-1.4.2-1/sits/src/sample_points.cpp |only sits-1.4.2-1/sits/tests/testthat/Rplots.pdf |only sits-1.5.0/sits/DESCRIPTION | 77 sits-1.5.0/sits/MD5 | 483 +-- sits-1.5.0/sits/NAMESPACE | 81 sits-1.5.0/sits/NEWS.md | 33 sits-1.5.0/sits/R/RcppExports.R | 96 sits-1.5.0/sits/R/api_accessors.R | 2 sits-1.5.0/sits/R/api_accuracy.R | 24 sits-1.5.0/sits/R/api_apply.R | 57 sits-1.5.0/sits/R/api_band.R | 24 sits-1.5.0/sits/R/api_bbox.R | 22 sits-1.5.0/sits/R/api_block.R | 14 sits-1.5.0/sits/R/api_check.R | 1511 ++++------ sits-1.5.0/sits/R/api_chunks.R | 43 sits-1.5.0/sits/R/api_classify.R | 317 +- sits-1.5.0/sits/R/api_clean.R | 22 sits-1.5.0/sits/R/api_cluster.R | 36 sits-1.5.0/sits/R/api_colors.R | 66 sits-1.5.0/sits/R/api_combine_predictions.R | 28 sits-1.5.0/sits/R/api_comp.R | 15 sits-1.5.0/sits/R/api_conf.R | 512 +-- sits-1.5.0/sits/R/api_csv.R | 12 sits-1.5.0/sits/R/api_cube.R | 328 +- sits-1.5.0/sits/R/api_data.R | 165 - sits-1.5.0/sits/R/api_debug.R | 18 sits-1.5.0/sits/R/api_download.R | 82 sits-1.5.0/sits/R/api_environment.R |only sits-1.5.0/sits/R/api_factory.R | 2 sits-1.5.0/sits/R/api_file.R | 2 sits-1.5.0/sits/R/api_file_info.R | 16 sits-1.5.0/sits/R/api_gdal.R | 47 sits-1.5.0/sits/R/api_gdalcubes.R | 141 sits-1.5.0/sits/R/api_jobs.R | 9 sits-1.5.0/sits/R/api_kohonen.R |only sits-1.5.0/sits/R/api_label_class.R | 52 sits-1.5.0/sits/R/api_merge.R |only sits-1.5.0/sits/R/api_mixture_model.R | 31 sits-1.5.0/sits/R/api_ml_model.R | 2 sits-1.5.0/sits/R/api_mosaic.R | 54 sits-1.5.0/sits/R/api_opensearch.R |only sits-1.5.0/sits/R/api_parallel.R | 34 sits-1.5.0/sits/R/api_period.R | 17 sits-1.5.0/sits/R/api_plot_raster.R | 517 +-- sits-1.5.0/sits/R/api_plot_time_series.R | 36 sits-1.5.0/sits/R/api_plot_vector.R | 145 sits-1.5.0/sits/R/api_point.R | 8 sits-1.5.0/sits/R/api_predictors.R | 2 sits-1.5.0/sits/R/api_raster.R | 146 sits-1.5.0/sits/R/api_raster_sub_image.R | 106 sits-1.5.0/sits/R/api_raster_terra.R | 50 sits-1.5.0/sits/R/api_reclassify.R | 48 sits-1.5.0/sits/R/api_reduce.R |only sits-1.5.0/sits/R/api_regularize.R | 118 sits-1.5.0/sits/R/api_roi.R | 19 sits-1.5.0/sits/R/api_s2tile.R | 168 - 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sits-1.5.0/sits/R/sits_accuracy.R | 210 - sits-1.5.0/sits/R/sits_active_learning.R | 20 sits-1.5.0/sits/R/sits_apply.R | 69 sits-1.5.0/sits/R/sits_bands.R | 41 sits-1.5.0/sits/R/sits_bbox.R | 9 sits-1.5.0/sits/R/sits_classify.R | 197 - sits-1.5.0/sits/R/sits_clean.R |only sits-1.5.0/sits/R/sits_cluster.R | 74 sits-1.5.0/sits/R/sits_colors.R | 151 sits-1.5.0/sits/R/sits_combine_predictions.R | 27 sits-1.5.0/sits/R/sits_config.R | 34 sits-1.5.0/sits/R/sits_csv.R | 31 sits-1.5.0/sits/R/sits_cube.R | 113 sits-1.5.0/sits/R/sits_cube_copy.R | 24 sits-1.5.0/sits/R/sits_factory.R | 2 sits-1.5.0/sits/R/sits_filters.R | 9 sits-1.5.0/sits/R/sits_geo_dist.R | 5 sits-1.5.0/sits/R/sits_get_data.R | 62 sits-1.5.0/sits/R/sits_imputation.R |only sits-1.5.0/sits/R/sits_label_classification.R | 78 sits-1.5.0/sits/R/sits_labels.R | 81 sits-1.5.0/sits/R/sits_lighttae.R | 57 sits-1.5.0/sits/R/sits_machine_learning.R | 71 sits-1.5.0/sits/R/sits_merge.R | 162 - sits-1.5.0/sits/R/sits_mixture_model.R | 34 sits-1.5.0/sits/R/sits_mlp.R | 70 sits-1.5.0/sits/R/sits_mosaic.R | 5 sits-1.5.0/sits/R/sits_patterns.R | 7 sits-1.5.0/sits/R/sits_plot.R | 556 ++- sits-1.5.0/sits/R/sits_predictors.R | 8 sits-1.5.0/sits/R/sits_reclassify.R | 45 sits-1.5.0/sits/R/sits_reduce.R |only sits-1.5.0/sits/R/sits_regularize.R | 139 sits-1.5.0/sits/R/sits_resnet.R | 87 sits-1.5.0/sits/R/sits_sample_functions.R | 277 + sits-1.5.0/sits/R/sits_segmentation.R | 45 sits-1.5.0/sits/R/sits_select.R | 65 sits-1.5.0/sits/R/sits_sf.R | 1 sits-1.5.0/sits/R/sits_smooth.R | 102 sits-1.5.0/sits/R/sits_som.R | 116 sits-1.5.0/sits/R/sits_summary.R | 29 sits-1.5.0/sits/R/sits_tae.R | 54 sits-1.5.0/sits/R/sits_tempcnn.R | 93 sits-1.5.0/sits/R/sits_timeline.R | 32 sits-1.5.0/sits/R/sits_train.R | 15 sits-1.5.0/sits/R/sits_tuning.R | 30 sits-1.5.0/sits/R/sits_uncertainty.R | 91 sits-1.5.0/sits/R/sits_utils.R | 2 sits-1.5.0/sits/R/sits_validate.R | 33 sits-1.5.0/sits/R/sits_variance.R | 57 sits-1.5.0/sits/R/sits_view.R | 204 - 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Title: Streamline Population Genomic and Genetic Analyses
Description: Estimate commonly used population genomic statistics and generate publication quality figures. 'PopGenHelpR' uses vcf, 'geno' (012), and csv files to generate output.
Author: Keaka Farleigh [aut, cph, cre]
,
Mason Murphy [aut, cph, ctb] ,
Christopher Blair [aut, cph, ctb]
,
Tereza Jezkova [aut, cph, ctb]
Maintainer: Keaka Farleigh <keakafarleigh@gmail.com>
Diff between PopGenHelpR versions 1.2.1 dated 2023-08-16 and 1.3.0 dated 2024-05-09
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Title: ArcGIS Utility Functions
Description: Developer oriented utility functions designed to be used as
the building blocks of R packages that work with ArcGIS Location
Services. It provides functionality for authorization, Esri JSON
construction and parsing, as well as other utilities pertaining to
geometry and Esri type conversions. To support 'ArcGIS Pro' users,
authorization can be done via 'arcgisbinding'. Installation
instructions for 'arcgisbinding' can be found at
<https://r.esri.com/r-bridge-site/arcgisbinding/installing-arcgisbinding.html>.
Author: Josiah Parry [aut, cre] ,
Kenneth Vernon [ctb] ,
Martha Bass [ctb]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between arcgisutils versions 0.2.0 dated 2024-02-22 and 0.3.0 dated 2024-05-09
arcgisutils-0.2.0/arcgisutils/R/RcppExports.R |only arcgisutils-0.2.0/arcgisutils/R/as-esri-geometry.R |only arcgisutils-0.2.0/arcgisutils/man/esri_geometry.Rd |only arcgisutils-0.2.0/arcgisutils/src/RcppExports.cpp |only arcgisutils-0.2.0/arcgisutils/src/esri-geometry.cpp |only arcgisutils-0.2.0/arcgisutils/src/transpose.cpp |only arcgisutils-0.3.0/arcgisutils/DESCRIPTION | 15 - arcgisutils-0.3.0/arcgisutils/MD5 | 108 ++++++-- arcgisutils-0.3.0/arcgisutils/NAMESPACE | 19 - arcgisutils-0.3.0/arcgisutils/NEWS.md | 17 + arcgisutils-0.3.0/arcgisutils/R/arc-auth.R | 107 ++++---- arcgisutils-0.3.0/arcgisutils/R/arc-base-req.R | 42 +++ arcgisutils-0.3.0/arcgisutils/R/arc-token.R | 1 arcgisutils-0.3.0/arcgisutils/R/arcgisutils-package.R | 2 arcgisutils-0.3.0/arcgisutils/R/esri-features-list.R |only arcgisutils-0.3.0/arcgisutils/R/esri-features-string.R |only arcgisutils-0.3.0/arcgisutils/R/esri-featureset-list.R |only arcgisutils-0.3.0/arcgisutils/R/esri-featureset-string.R |only arcgisutils-0.3.0/arcgisutils/R/esri-field-mapping.R | 90 ++++--- arcgisutils-0.3.0/arcgisutils/R/esri-geometry.R |only arcgisutils-0.3.0/arcgisutils/R/extendr-wrappers.R |only arcgisutils-0.3.0/arcgisutils/R/feature-collection.R | 18 - arcgisutils-0.3.0/arcgisutils/R/import-standalone-obj-type.R |only arcgisutils-0.3.0/arcgisutils/R/import-standalone-types-check.R |only arcgisutils-0.3.0/arcgisutils/R/rbind-results.R |only arcgisutils-0.3.0/arcgisutils/R/self.R |only arcgisutils-0.3.0/arcgisutils/R/util-parse-esri-json.R | 30 ++ arcgisutils-0.3.0/arcgisutils/R/utils-crs.R | 6 arcgisutils-0.3.0/arcgisutils/R/utils-requests.R | 92 ++++--- arcgisutils-0.3.0/arcgisutils/R/utils.R | 5 arcgisutils-0.3.0/arcgisutils/README.md | 122 +++++++++- arcgisutils-0.3.0/arcgisutils/configure |only arcgisutils-0.3.0/arcgisutils/configure.ac |only arcgisutils-0.3.0/arcgisutils/configure.win |only arcgisutils-0.3.0/arcgisutils/man/arc_base_req.Rd | 12 arcgisutils-0.3.0/arcgisutils/man/arc_self_meta.Rd |only arcgisutils-0.3.0/arcgisutils/man/as_esri_geometry.Rd |only arcgisutils-0.3.0/arcgisutils/man/auth.Rd | 15 - arcgisutils-0.3.0/arcgisutils/man/detect_errors.Rd | 19 - arcgisutils-0.3.0/arcgisutils/man/features.Rd |only arcgisutils-0.3.0/arcgisutils/man/featureset.Rd |only arcgisutils-0.3.0/arcgisutils/man/field_mapping.Rd | 21 + arcgisutils-0.3.0/arcgisutils/man/layer_json.Rd | 5 arcgisutils-0.3.0/arcgisutils/man/rbind_results.Rd |only arcgisutils-0.3.0/arcgisutils/src/Makevars |only arcgisutils-0.3.0/arcgisutils/src/Makevars.ucrt |only arcgisutils-0.3.0/arcgisutils/src/Makevars.win |only arcgisutils-0.3.0/arcgisutils/src/arcgisutils-win.def |only arcgisutils-0.3.0/arcgisutils/src/entrypoint.c |only arcgisutils-0.3.0/arcgisutils/src/rust |only arcgisutils-0.3.0/arcgisutils/tests/testthat/test-arc-base-req.R |only arcgisutils-0.3.0/arcgisutils/tests/testthat/test-date-handling.R | 7 arcgisutils-0.3.0/arcgisutils/tests/testthat/test-empty-results.R | 10 arcgisutils-0.3.0/arcgisutils/tests/testthat/test-null-geometry.R |only arcgisutils-0.3.0/arcgisutils/tests/testthat/test-rbind-results.R |only arcgisutils-0.3.0/arcgisutils/tests/testthat/testdata/null-polyline.json |only arcgisutils-0.3.0/arcgisutils/tools |only 57 files changed, 530 insertions(+), 233 deletions(-)
Title: B Cell Receptor Phylogenetics Toolkit
Description: Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees.
Provides methods to 1) reconstruct unmutated ancestral sequences,
2) build B cell phylogenetic trees using multiple methods,
3) visualize trees with metadata at the tips,
4) reconstruct intermediate sequences,
5) detect biased ancestor-descendant relationships among metadata types
Workflow examples available at documentation site (see URL).
Citations:
Hoehn et al (2022) <doi:10.1371/journal.pcbi.1009885>,
Hoehn et al (2021) <doi:10.1101/2021.01.06.425648>.
Author: Kenneth Hoehn [aut, cre],
Cole Jensen [ctb],
Susanna Marquez [ctb],
Jason Vander Heiden [ctb],
Steven Kleinstein [aut, cph]
Maintainer: Kenneth Hoehn <kenneth.b.hoehn@dartmouth.edu>
Diff between dowser versions 2.1.0 dated 2023-12-22 and 2.2.0 dated 2024-05-09
DESCRIPTION | 12 +++--- MD5 | 52 ++++++++++++++--------------- NEWS.md | 7 +++ R/Clones.R | 10 ++--- R/Dowser.R | 2 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/Building-Trees-Vignette.R | 16 ++++---- inst/doc/Building-Trees-Vignette.pdf |binary inst/doc/Discrete-Trait-Vignette.R | 22 ++++++------ inst/doc/Discrete-Trait-Vignette.pdf |binary inst/doc/Germlines-Vignette.R | 2 - inst/doc/Germlines-Vignette.pdf |binary inst/doc/Measurable-Evolution.R | 8 ++-- inst/doc/Measurable-Evolution.pdf |binary inst/doc/Plotting-Trees-Vignette.R | 18 +++++----- inst/doc/Plotting-Trees-Vignette.pdf |binary inst/doc/Quickstart-Vignette.R | 2 - inst/doc/Quickstart-Vignette.pdf |binary inst/doc/Resolve-Light-Chains-Vignette.R | 18 +++++----- inst/doc/Resolve-Light-Chains-Vignette.pdf |binary inst/doc/Sequences-Vignette.R | 2 - inst/doc/Sequences-Vignette.pdf |binary man/dowser-package.Rd | 1 man/dowser.Rd | 24 +++++++++++++ man/formatClones.Rd | 2 - man/maskCodons.Rd | 4 +- 27 files changed, 116 insertions(+), 86 deletions(-)
Title: Curing of Biological Sequences
Description: Curates biological sequences massively, quickly, without errors and
without internet connection. Biological sequences curing is performed by
aligning the forward and / or revers primers or ends of cloning vectors with the sequences
to be cleaned. After the alignment, new subsequences are generated without biological fragment
not desired by the user.
Pozzi et al (2020) <doi:10.1007/s00438-020-01671-z>.
Author: Florencia I. Pozzi, Silvina A. Felitti
Maintainer: Florencia I. Pozzi <florenciapoz@hotmail.com>
Diff between CleanBSequences versions 1.4.0 dated 2022-04-28 and 2.3.0 dated 2024-05-09
DESCRIPTION | 10 +++---- MD5 | 16 ++++++------ NAMESPACE | 8 +++++- R/DNAStringSetOPR.R | 7 ++++- R/DNAStringSetTPR.R | 7 ++++- R/OnePrimerRemove.R | 11 ++++++-- R/TwoPrimersRemove.R | 6 ++++ man/OnePrimerRemove.Rd | 58 ++++++++++++++++++++++----------------------- man/TwoPrimerRemove.Rd | 62 ++++++++++++++++++++++++------------------------- 9 files changed, 106 insertions(+), 79 deletions(-)
More information about CleanBSequences at CRAN
Permanent link
Title: Extracts the Backbone from Graphs
Description: An implementation of methods for extracting an unweighted unipartite
graph (i.e. a backbone) from an unweighted unipartite graph, a weighted unipartite
graph, the projection of an unweighted bipartite graph, or the projection
of a weighted bipartite graph (Neal, 2022 <doi:10.1371/journal.pone.0269137>).
Author: Zachary Neal [aut, cre] ,
Rachel Domagalski [ctb],
Bruce Sagan [ctb],
Karl Godard [ctb]
Maintainer: Zachary Neal <zpneal@msu.edu>
Diff between backbone versions 2.1.3 dated 2024-01-24 and 2.1.4 dated 2024-05-09
DESCRIPTION | 10 +++--- MD5 | 54 ++++++++++++++++---------------- NEWS.md | 5 +++ R/backbone.R | 2 - R/disparity.R | 2 - R/fixedrow.R | 4 +- R/lans.R | 4 +- R/mlf.R | 10 +++--- R/osdsm.R | 4 +- R/sdsm.R | 6 +-- R/sparsify.R | 26 +++++++-------- R/utils.R | 18 ++++++---- inst/doc/backbone.Rmd | 2 - inst/doc/backbone.html | 59 ++++++++++++++++++++---------------- inst/tinytest/test_backbone.R | 27 +++++++--------- man/backbone.Rd | 2 - man/disparity.Rd | 2 - man/mlf.Rd | 2 - man/sparsify.Rd | 2 - man/sparsify.with.geometric.Rd | 2 - man/sparsify.with.gspar.Rd | 2 - man/sparsify.with.hypergeometric.Rd | 2 - man/sparsify.with.jaccard.Rd | 2 - man/sparsify.with.lspar.Rd | 2 - man/sparsify.with.meetmin.Rd | 2 - man/sparsify.with.quadrilateral.Rd | 2 - man/sparsify.with.simmelian.Rd | 2 - vignettes/backbone.Rmd | 2 - 28 files changed, 137 insertions(+), 122 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-13 0.5.0
2023-12-05 0.4.1
2023-11-05 0.4.0
2023-09-25 0.3.1
2023-09-02 0.3.0
2023-08-25 0.2.0
2023-08-09 0.1.2
2023-06-19 0.1.1
2023-05-31 0.1.0
Title: 'Neuroconductor' Base Package with Helper Functions for 'nifti'
Objects
Description: Base package for 'Neuroconductor', which includes many helper
functions that interact with objects of class 'nifti', implemented by
package 'oro.nifti', for reading/writing and also other manipulation
functions.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between neurobase versions 1.32.3 dated 2022-10-23 and 1.32.4 dated 2024-05-09
DESCRIPTION | 8 MD5 | 22 NEWS.md | 4 R/orient_rpi.R | 6 README.md | 6 build/vignette.rds |binary inst/doc/neurobase.html | 712 +++++++++++++++++---------- inst/doc/nifti_basics.R | 2 inst/doc/nifti_basics.html | 1177 ++++++++++++++++++++++++++++++--------------- inst/doc/simple_io.R | 2 inst/doc/simple_io.html | 338 +++++++----- man/orient_rpi.Rd | 6 12 files changed, 1472 insertions(+), 811 deletions(-)
Title: Creates Log Files
Description: Contains functions to help create log files. The
package aims to overcome the difficulty of the base R sink() command. The
log_print() function will print to both the console and the file log,
without interfering in other write operations.
Author: David Bosak [aut, cre],
Rikard Isaksson [ctb]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between logr versions 1.3.7 dated 2024-04-07 and 1.3.8 dated 2024-05-09
DESCRIPTION | 8 ++--- MD5 | 32 ++++++++++++----------- NEWS.md | 5 +++ R/logr.R | 14 ++++++---- R/unicode.R | 58 +++++++++++++++++++++--------------------- R/utilities.R | 15 +++++----- build/vignette.rds |binary inst/doc/logr-example1.html | 2 - inst/doc/logr-globals.html | 2 - inst/doc/logr-put.html | 2 - inst/doc/logr-tidylog.html | 2 - inst/doc/logr.html | 2 - man/logr.Rd | 1 tests/testthat/log/test36.log | 34 ++++++++++++++++-------- tests/testthat/log/test36.msg | 3 ++ tests/testthat/log/test38.log |only tests/testthat/log/test38.msg |only tests/testthat/test-logr.R | 20 ++++++++++++++ 18 files changed, 125 insertions(+), 75 deletions(-)
Title: Analytic Insurance Rating Techniques
Description: Methods for insurance rating. It helps actuaries to implement GLMs within all relevant steps needed to construct
a risk premium from raw data. It provides a data driven strategy for the construction of insurance tariff classes.
This strategy is based on the work by Antonio and Valdez (2012) <doi:10.1007/s10182-011-0152-7>. It also provides recipes
on how to easily perform one-way, or univariate, analyses on an insurance portfolio. In addition it adds functionality
to include reference categories in the levels of the coefficients in the output of a generalized linear regression analysis.
Author: Martin Haringa [aut, cre]
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between insurancerating versions 0.7.2 dated 2022-12-20 and 0.7.3 dated 2024-05-09
insurancerating-0.7.2/insurancerating/R/construct_tariff_classes.R |only insurancerating-0.7.2/insurancerating/man/rating_factors1.Rd |only insurancerating-0.7.3/insurancerating/DESCRIPTION | 8 insurancerating-0.7.3/insurancerating/MD5 | 68 - insurancerating-0.7.3/insurancerating/NAMESPACE | 4 insurancerating-0.7.3/insurancerating/NEWS.md | 6 insurancerating-0.7.3/insurancerating/R/data_MTPL.R | 1 insurancerating-0.7.3/insurancerating/R/deprecated.R | 20 insurancerating-0.7.3/insurancerating/R/gam_construct_tariff_classes.R | 168 ++-- insurancerating-0.7.3/insurancerating/R/gam_fit.R | 196 ++--- insurancerating-0.7.3/insurancerating/R/histbin.R | 22 insurancerating-0.7.3/insurancerating/R/model_add_prediction.R | 31 insurancerating-0.7.3/insurancerating/R/model_get_data.R | 106 +- insurancerating-0.7.3/insurancerating/R/model_performance.R | 29 insurancerating-0.7.3/insurancerating/R/model_performance_bootstrap_rmse.R | 37 - insurancerating-0.7.3/insurancerating/R/model_performance_overdispersion.R | 10 insurancerating-0.7.3/insurancerating/R/model_performance_residuals.R | 52 - insurancerating-0.7.3/insurancerating/R/model_rating_factors.R | 292 ++++---- insurancerating-0.7.3/insurancerating/R/model_refinement.R | 79 +- insurancerating-0.7.3/insurancerating/R/time_period_to_months.R | 13 insurancerating-0.7.3/insurancerating/R/time_reduce.R | 65 - insurancerating-0.7.3/insurancerating/R/time_rows_per_date.R | 6 insurancerating-0.7.3/insurancerating/R/truncated_severity.R | 106 +- insurancerating-0.7.3/insurancerating/R/univariate.R | 185 ++--- insurancerating-0.7.3/insurancerating/R/utils.R | 365 +++++----- insurancerating-0.7.3/insurancerating/R/utils_refinement.R | 108 +- insurancerating-0.7.3/insurancerating/man/autoplot.constructtariffclasses.Rd | 49 - insurancerating-0.7.3/insurancerating/man/construct_tariff_classes.Rd | 80 -- insurancerating-0.7.3/insurancerating/man/histbin.Rd | 3 insurancerating-0.7.3/insurancerating/man/model_performance.Rd | 8 insurancerating-0.7.3/insurancerating/man/rating_factors.Rd | 7 insurancerating-0.7.3/insurancerating/tests/testthat/test_bootstrap_rmse.R | 2 insurancerating-0.7.3/insurancerating/tests/testthat/test_model_get_data.R | 6 insurancerating-0.7.3/insurancerating/tests/testthat/test_model_rating_factors.R | 56 - insurancerating-0.7.3/insurancerating/tests/testthat/test_model_refinement.R | 9 insurancerating-0.7.3/insurancerating/tests/testthat/test_univariate.R | 3 36 files changed, 1115 insertions(+), 1085 deletions(-)
More information about insurancerating at CRAN
Permanent link
Title: Modern Database Engine for Complex Data Based on
Multi-Dimensional Arrays
Description: The modern database 'TileDB' introduces a powerful on-disk
format for storing and accessing any complex data based on multi-dimensional
arrays. It supports dense and sparse arrays, dataframes and key-values stores,
cloud storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression,
encryption and checksum filters, uses a fully multi-threaded implementation,
supports parallel I/O, data versioning ('time travel'), metadata and groups.
It is implemented as an embeddable cross-platform C++ library with APIs from
several languages, and integrations. This package provides the R support.
Author: TileDB, Inc. [aut, cph],
Dirk Eddelbuettel [cre]
Maintainer: Dirk Eddelbuettel <dirk@tiledb.com>
Diff between tiledb versions 0.26.0 dated 2024-04-15 and 0.27.0 dated 2024-05-09
tiledb-0.26.0/tiledb/inst/tinytest/test_arrayschemaevolution_arrow.R |only tiledb-0.27.0/tiledb/DESCRIPTION | 6 tiledb-0.27.0/tiledb/MD5 | 39 - tiledb-0.27.0/tiledb/NAMESPACE | 1 tiledb-0.27.0/tiledb/NEWS.md | 28 + tiledb-0.27.0/tiledb/R/BatchedQuery.R | 8 tiledb-0.27.0/tiledb/R/Group.R | 32 + tiledb-0.27.0/tiledb/R/Query.R | 7 tiledb-0.27.0/tiledb/R/RcppExports.R | 20 tiledb-0.27.0/tiledb/README.md | 2 tiledb-0.27.0/tiledb/build/vignette.rds |binary tiledb-0.27.0/tiledb/inst/examples/ex_s3_serialize.R |only tiledb-0.27.0/tiledb/inst/tinytest/test_arrayschemaevolution.R | 45 ++ tiledb-0.27.0/tiledb/inst/tinytest/test_group.R | 19 tiledb-0.27.0/tiledb/inst/tinytest/test_query.R | 2 tiledb-0.27.0/tiledb/inst/tinytest/test_timetravel.R | 40 + tiledb-0.27.0/tiledb/man/tiledb_group_delete.Rd |only tiledb-0.27.0/tiledb/man/tiledb_group_open.Rd | 5 tiledb-0.27.0/tiledb/src/RcppExports.cpp | 72 +-- tiledb-0.27.0/tiledb/src/deprecation.cpp | 217 ---------- tiledb-0.27.0/tiledb/src/libtiledb.cpp | 33 - tiledb-0.27.0/tiledb/tools/tiledbVersion.txt | 4 22 files changed, 268 insertions(+), 312 deletions(-)
Title: Regression Spline Functions and Classes
Description: Constructs basis functions of B-splines, M-splines,
I-splines, convex splines (C-splines), periodic splines,
natural cubic splines, generalized Bernstein polynomials,
their derivatives, and integrals (except C-splines)
by closed-form recursive formulas.
It also contains a C++ head-only library integrated with Rcpp.
See Wang and Yan (2021) <doi:10.6339/21-JDS1020> for details.
Author: Wenjie Wang [aut, cre] ,
Jun Yan [aut]
Maintainer: Wenjie Wang <wang@wwenjie.org>
Diff between splines2 versions 0.5.1 dated 2023-08-19 and 0.5.2 dated 2024-05-09
DESCRIPTION | 8 - MD5 | 102 ++++++++++----------- NEWS.md | 15 ++- R/bSpline.R | 3 R/bernsteinPoly.R | 2 R/cSpline.R | 2 R/deriv.R | 2 R/extract.R | 2 R/iSpline.R | 2 R/knots.R | 2 R/mSpline.R | 2 R/makepredictcall.R | 2 R/misc.R | 2 R/naturalSpline.R | 2 R/plot.R | 10 +- R/predict.R | 2 R/print.R | 2 R/splines2-package.R | 6 - R/update.R | 2 R/zzz.R | 17 +-- README.md | 44 ++++----- build/vignette.rds |binary inst/CITATION | 4 inst/doc/splines2-intro.R | 5 + inst/doc/splines2-intro.Rmd | 9 + inst/doc/splines2-intro.html | 115 ++++++++++++------------ inst/doc/splines2-wi-rcpp.html | 11 +- inst/examples/ex-mSpline.R | 4 inst/examples/ex-naturalSpline.R | 2 inst/examples/ex-predict.R | 10 ++ inst/include/splines2Armadillo.h | 2 inst/include/splines2Armadillo/BSpline.h | 2 inst/include/splines2Armadillo/BernsteinPoly.h | 2 inst/include/splines2Armadillo/CSpline.h | 2 inst/include/splines2Armadillo/ISpline.h | 2 inst/include/splines2Armadillo/MSpline.h | 2 inst/include/splines2Armadillo/NaturalSpline.h | 2 inst/include/splines2Armadillo/NaturalSplineK.h | 2 inst/include/splines2Armadillo/PeriodicSpline.h | 2 inst/include/splines2Armadillo/SplineBase.h | 11 +- inst/include/splines2Armadillo/common.h | 2 inst/include/splines2Armadillo/utils.h | 2 man/bSpline.Rd | 3 man/cSpline.Rd | 3 man/iSpline.Rd | 3 man/mSpline.Rd | 7 - man/naturalSpline.Rd | 5 - man/plot.splines2.Rd | 6 + man/predict.Rd | 10 ++ man/splines2.Rd | 19 +++ src/splines2_export.cpp | 2 vignettes/splines2-intro.Rmd | 9 + 52 files changed, 293 insertions(+), 198 deletions(-)
Title: Add Custom Legends to 'leaflet' Maps
Description: Provides extensions to the 'leaflet' package to
customize legends with images, text styling, orientation, sizing,
and symbology and functions to create symbols to plot on maps.
Author: Thomas Roh [aut, cre],
Ricardo Rodrigo Basa [ctb]
Maintainer: Thomas Roh <thomas@roh.engineering>
Diff between leaflegend versions 1.2.0 dated 2024-01-10 and 1.2.1 dated 2024-05-09
DESCRIPTION | 8 +++---- MD5 | 11 +++++----- NEWS.md | 6 +++++ R/legend.R | 45 +++++++++++++++++++++++-------------------- inst/CITATION |only man/addLeafLegends.Rd | 3 +- tests/testthat/test-legend.R | 17 +++++++++++++++- 7 files changed, 59 insertions(+), 31 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: Hierarchical continuous (and discrete) time state space modelling, for linear
and nonlinear systems measured by continuous variables, with limited support for
binary data. The subject specific dynamic system is modelled as a stochastic
differential equation (SDE) or difference equation, measurement models are typically multivariate normal factor models.
Linear mixed effects SDE's estimated via maximum likelihood and optimization are the default.
Nonlinearities, (state dependent parameters) and random effects on all parameters
are possible, using either max likelihood / max a posteriori optimization
(with optional importance sampling) or Stan's Hamiltonian Monte Carlo sampling.
See <https://github.com/cdriveraus/ctsem/raw/master/vignettes/hierarchicalmanual.pdf>
for details. Priors may be used. For the conceptual overview of the hierarchical Bayesian
linear SDE approach,
see <https://www.researchgate.net/publication/324093594_Hierarchical_Bayesian_Continuous_Time_Dynamic_Mod [...truncated...]
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph],
Trustees of Columbia University [cph]
Maintainer: Charles Driver <charles.driver2@uzh.ch>
Diff between ctsem versions 3.9.1 dated 2023-10-30 and 3.10.0 dated 2024-05-09
DESCRIPTION | 19 - MD5 | 69 ++- NAMESPACE | 2 NEWS.md | 8 R/JKalman.R | 2 R/ctACF.R | 360 ++++++++++++++++---- R/ctDiscretiseData.R | 46 +- R/ctJacobian.R | 48 +- R/ctKalman.R | 74 ++-- R/ctModelLatex.R | 2 R/ctStanData.R | 48 +- R/ctStanFit.R | 9 R/ctStanKalman.R | 43 +- R/ctStanModel.R | 3 R/ctStanModelWriter.R | 409 ++++++++++++++--------- R/ctStanPostPredict.R | 13 R/ctSummarise.R | 98 ++++- R/ctTransforms.R | 2 R/ctsem-package.R | 3 R/ctsemUtils.R | 2 R/ctsmupdate.R | 14 R/llsurface.R | 15 R/stanoptimis.R | 21 - R/summary.ctStanFit.R | 2 data/ctstantestfit.rda |binary inst/doc/hierarchicalmanual.pdf |binary inst/doc/hierarchicalmanual.rnw | 673 +++++++++++++++++++-------------------- inst/stan/ctsm.stan | 404 ++++++++++++----------- inst/stan/ctsmgen.stan | 405 ++++++++++++----------- man/ctACF.Rd | 12 man/ctKalman.Rd | 2 man/ctsem-package.Rd | 2 man/plot.ctKalmanDF.Rd | 4 man/plotctACF.Rd |only tests/testthat/test-ukfpoptest.R | 60 --- vignettes/hierarchicalmanual.rnw | 673 +++++++++++++++++++-------------------- 36 files changed, 1998 insertions(+), 1549 deletions(-)
Title: Robust Trimmed Clustering
Description: Provides functions for robust trimmed clustering. The methods are
described in Garcia-Escudero (2008) <doi:10.1214/07-AOS515>,
Fritz et al. (2012) <doi:10.18637/jss.v047.i12>,
Garcia-Escudero et al. (2011) <doi:10.1007/s11222-010-9194-z> and others.
Author: Valentin Todorov [aut, cre] ,
Luis Angel Garcia Escudero [aut],
Agustin Mayo Iscar [aut],
Javier Crespo Guerrero [aut],
Heinrich Fritz [aut]
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between tclust versions 2.0-3 dated 2024-04-17 and 2.0-4 dated 2024-05-09
ChangeLog | 10 ++ DESCRIPTION | 8 +- MD5 | 18 ++-- inst/doc/tclust.pdf |binary inst/doc/tclust.rnw | 110 ++++++++++++++-------------- src/tclust.cpp | 185 ++++++++++++++++++++++++++++-------------------- src/tkmeans.cpp | 6 + tests/ttclust.R | 11 +- tests/ttclust.Rout.save | 120 ++++++++++++------------------- vignettes/tclust.rnw | 110 ++++++++++++++-------------- 10 files changed, 304 insertions(+), 274 deletions(-)
Title: Intra- and Inter-Regional Similarity
Description: Calculates intra-regional and inter-regional similarities based on user-provided
spatial vector objects (regions) and spatial raster objects (cells with values).
Implemented metrics include inhomogeneity, isolation
(Haralick and Shapiro (1985) <doi:10.1016/S0734-189X(85)90153-7>,
Jasiewicz et al. (2018) <doi:10.1016/j.cageo.2018.06.003>),
and distinction (Nowosad (2021) <doi:10.1080/13658816.2021.1893324>).
Author: Jakub Nowosad [aut, cre]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between regional versions 0.3.3 dated 2022-03-14 and 0.4.4 dated 2024-05-09
DESCRIPTION | 11 +++--- MD5 | 32 +++++++++--------- R/distance_helpers.R |only R/reg_distinction.R | 22 ++++++++---- R/reg_inhomogeneity.R | 16 +++++---- R/reg_isolation.R | 53 +++++++++++++++++++------------ README.md | 4 +- build |only man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/reg_distinction.Rd | 12 +++++-- man/reg_inhomogeneity.Rd | 14 ++++++-- man/reg_isolation.Rd | 14 ++++++-- man/regional-package.Rd | 3 + tests/testthat/test-reg_distinction.R | 24 ++++++++++++-- tests/testthat/test-reg_inhomogeneity.R | 19 +++++++++++ tests/testthat/test-reg_isolation.R | 20 +++++++++++ 18 files changed, 177 insertions(+), 67 deletions(-)
Title: Data Wrangling for Antimicrobial Resistance Studies
Description: Designed for analyzing the Medical Information Mart for Intensive Care(MIMIC) dataset,
a repository of freely accessible electronic health records. MIMER(MIMIC-enabled Research) package, offers
a suite of data wrangling functions tailored specifically for preparing the dataset for research purposes,
particularly in antimicrobial resistance(AMR) studies. It simplifies complex data manipulation tasks, allowing
researchers to focus on their primary inquiries without being bogged down by wrangling complexities.
Author: Anoop Velluva [aut, cre] ,
Alessandro Gerada [ctb] ,
Alexander Howard [ctb]
Maintainer: Anoop Velluva <anoop.velluva@liverpool.ac.uk>
Diff between MIMER versions 1.0.0 dated 2024-05-08 and 1.0.1 dated 2024-05-09
DESCRIPTION | 18 ++- MD5 | 7 - NEWS.md |only R/convert_antibiotics.R | 1 README.md | 255 +++++++++++++++++++++++------------------------- 5 files changed, 143 insertions(+), 138 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of multiple standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for comprehensive summary statistics via pivot tables, a comprehensive regression analysis, ANOVA and t-test, visualizations including the Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, and Trellis graphics. Also includes a confirmatory factor analysis of multiple indicator measurement models, pedagogical routines for data simulation such as for the Central Limit Theorem, generation and rendering of regression instructions for interpretative output, and interactive visualizations.
Author: David Gerbing, The School of Business, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.3.2 dated 2024-04-07 and 4.3.3 dated 2024-05-09
DESCRIPTION | 8 MD5 | 134 ++++++------- NEWS.md | 46 ++++ R/ANOVA.R | 13 - R/BarChart.R | 202 +++++++++++++------ R/Histogram.R | 69 ++++-- R/Logit.R | 9 R/PieChart.R | 102 ++++++--- R/Plot.R | 85 +++++--- R/Regression.R | 11 - R/SummaryStats.R | 2 R/bc.data.frame.R | 14 - R/bc.main.R | 184 +++++++---------- R/corReorder.R | 2 R/param.old.R | 2 R/pc.main.R | 60 ++--- R/pivot.R | 22 -- R/plt.bins.R | 4 R/plt.lattice.R | 18 - R/plt.main.R | 10 R/reshape_wide.R | 1 R/style.R | 70 +++--- R/style.show.R | 20 - R/ttest.R | 11 - R/zzz.R | 32 ++- build/vignette.rds |binary data/dataStockPrice.rda |binary inst/doc/BarChart.R | 8 inst/doc/BarChart.Rmd | 14 - inst/doc/BarChart.html | 70 +++--- inst/doc/Customize.R | 2 inst/doc/Customize.Rmd | 2 inst/doc/Customize.html | 82 ++++--- inst/doc/Extract.html | 24 +- inst/doc/FactorAnalysis.html | 2 inst/doc/Histogram.html | 6 inst/doc/Means.html | 28 +- inst/doc/Plot.html | 16 - inst/doc/Proportions.html | 2 inst/doc/ReadWrite.html | 2 inst/doc/Regression.html | 8 inst/doc/Time.R | 24 +- inst/doc/Time.Rmd | 26 +- inst/doc/Time.html | 133 ++++++------ inst/doc/pivot.R | 2 inst/doc/pivot.Rmd | 2 inst/doc/pivot.html | 422 ++++++++++++++++++++--------------------- inst/doc/utilities.R | 4 inst/doc/utilities.Rmd | 4 inst/doc/utilities.html | 38 +-- inst/shiny_apps/BarChart/app.R | 42 ++-- man/ANOVA.Rd | 8 man/BarChart.Rd | 60 ++--- man/Histogram.Rd | 15 - man/Logit.Rd | 8 man/PieChart.Rd | 48 ++-- man/Plot.Rd | 19 - man/Regression.Rd | 8 man/dataStockPrice.Rd | 6 man/pivot.Rd | 5 man/reshape_wide.Rd | 2 man/style.Rd | 34 +-- man/ttest.Rd | 8 vignettes/BarChart.Rmd | 14 - vignettes/Customize.Rmd | 2 vignettes/Time.Rmd | 26 +- vignettes/pivot.Rmd | 2 vignettes/utilities.Rmd | 4 68 files changed, 1280 insertions(+), 1083 deletions(-)
Title: Evidential Regression
Description: An implementation of the 'Evidential Neural Network for Regression' model recently introduced in Denoeux (2023) <doi:10.1109/TFUZZ.2023.3268200>. In this model, prediction uncertainty is quantified by Gaussian random fuzzy numbers as introduced in Denoeux (2023) <doi:10.1016/j.fss.2022.06.004>. The package contains functions for training the network, tuning hyperparameters by cross-validation or the hold-out method, and making predictions. It also contains utilities for making calculations with Gaussian random fuzzy numbers (such as, e.g., computing the degrees of belief and plausibility of an interval, or combining Gaussian random fuzzy numbers).
Author: Thierry Denoeux [aut, cre]
Maintainer: Thierry Denoeux <tdenoeux@utc.fr>
Diff between evreg versions 1.1.0 dated 2024-05-08 and 1.1.1 dated 2024-05-09
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 5 +++++ R/foncgrad_musigh.R | 32 ++++++++++---------------------- inst/doc/Introduction.html | 16 ++++++++-------- 5 files changed, 31 insertions(+), 38 deletions(-)
Title: Parametric and Non-Parametric Copula-Based Imputation Methods
Description: Copula-based imputation methods: parametric and non-parametric algorithms for missing multivariate data through conditional copulas.
Author: Francesca Marta Lilja Di Lascio [aut, cre],
Aurora Gatto [aut],
Simone Giannerini [aut]
Maintainer: Francesca Marta Lilja Di Lascio <marta.dilascio@unibz.it>
Diff between CoImp versions 1.0 dated 2019-06-28 and 2.0.0 dated 2024-05-09
ChangeLog | 3 ++- DESCRIPTION | 22 ++++++++++++++-------- MD5 | 36 ++++++++++++++++++++---------------- NAMESPACE | 8 ++++---- R/CoImp.R | 10 +++++----- R/CoImp_Esterne.R | 2 +- R/InternalFunction.R |only R/MAR.R | 2 +- R/MCAR.R | 2 +- R/NPCoImp.R |only R/PerfMeasure.R | 8 ++++---- man/CoImp-class.Rd | 9 ++++----- man/CoImp.Rd | 8 +++----- man/MAR-class.Rd | 9 ++++----- man/MAR.Rd | 4 +--- man/MCAR-class.Rd | 4 +--- man/MCAR.Rd | 4 +--- man/NPCoImp-class.Rd |only man/NPCoImp.Rd |only man/PerfMeasure-class.Rd | 9 ++++----- man/PerfMeasure.Rd | 4 +--- 21 files changed, 71 insertions(+), 73 deletions(-)
Title: Interface to 'Travel Time' API
Description: 'Travel Time' API <https://docs.traveltime.com/api/overview/introduction> helps users find locations by journey time rather than using ‘as the crow flies’ distance.
Time-based searching gives users more opportunities for personalisation and delivers a more relevant search.
Author: TravelTime [aut, cre]
Maintainer: TravelTime <frontend@traveltime.com>
Diff between traveltimeR versions 1.2.0 dated 2024-04-11 and 1.2.1 dated 2024-05-09
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/make_searches.R | 15 ++++++++++----- 3 files changed, 15 insertions(+), 10 deletions(-)
Title: Quality Improvement Charts
Description: Functions for making run charts, Shewhart control charts and
Pareto charts for continuous quality improvement. Included control charts
are: I, MR, Xbar, S, T, C, U, U', P, P', and G charts. Non-random variation
in the form of minor to moderate persistent shifts in data over time is
identified by the Anhoej rules for unusually long runs and unusually few
crossing [Anhoej, Olesen (2014) <doi:10.1371/journal.pone.0113825>].
Non-random variation in the form of larger, possibly transient, shifts is
identified by Shewhart's 3-sigma rule [Mohammed, Worthington, Woodall (2008)
<doi:10.1136/qshc.2004.012047>].
Author: Jacob Anhoej [aut, cre]
Maintainer: Jacob Anhoej <jacob@anhoej.net>
Diff between qicharts2 versions 0.7.4 dated 2023-08-21 and 0.7.5 dated 2024-05-09
qicharts2-0.7.4/qicharts2/NEWS |only qicharts2-0.7.5/qicharts2/DESCRIPTION | 10 ++++---- qicharts2-0.7.5/qicharts2/MD5 | 26 +++++++++++----------- qicharts2-0.7.5/qicharts2/NEWS.md |only qicharts2-0.7.5/qicharts2/R/bchart.R | 14 +++++------ qicharts2-0.7.5/qicharts2/R/data.R | 2 - qicharts2-0.7.5/qicharts2/R/qic.plot.R | 7 ----- qicharts2-0.7.5/qicharts2/README.md | 4 ++- qicharts2-0.7.5/qicharts2/build/partial.rdb |binary qicharts2-0.7.5/qicharts2/build/vignette.rds |binary qicharts2-0.7.5/qicharts2/inst/doc/qicharts2.R | 22 +++++++++--------- qicharts2-0.7.5/qicharts2/inst/doc/qicharts2.Rmd | 2 - qicharts2-0.7.5/qicharts2/inst/doc/qicharts2.html | 10 ++++---- qicharts2-0.7.5/qicharts2/man/gtt.Rd | 2 - qicharts2-0.7.5/qicharts2/vignettes/qicharts2.Rmd | 2 - 15 files changed, 49 insertions(+), 52 deletions(-)