Title: Ensemble Models of Rank-Based Trees with Extracted Decision
Rules
Description: Fast computing an ensemble of rank-based trees via boosting or random forest on binary and multi-class problems. It converts continuous gene expression profiles into ranked gene pairs, for which the variable importance indices are computed and adopted for dimension reduction. Decision rules can be extracted from trees.
Author: Ruijie Yin [aut],
Chen Ye [aut],
Min Lu [aut, cre]
Maintainer: Min Lu <luminwin@gmail.com>
Diff between ranktreeEnsemble versions 0.22 dated 2023-08-18 and 0.23 dated 2024-05-23
DESCRIPTION | 8 ++++---- MD5 | 20 +++++++++++--------- inst |only man/extract.rules.Rd | 2 +- man/importance.Rd | 2 +- man/pair.Rd | 2 +- man/predict.Rd | 2 +- man/ranktreeEnsemble-package.Rd | 2 +- man/rboost.Rd | 2 +- man/rforest.Rd | 2 +- man/select.rules.Rd | 2 +- 11 files changed, 23 insertions(+), 21 deletions(-)
More information about ranktreeEnsemble at CRAN
Permanent link
Title: Flexible Regularized Estimating Equations
Description: Unified regularized estimating equation solver. Currently the package includes one solver with the l1 penalty only. More solvers and penalties are under development. Reference: Yi Yang, Yuwen Gu, Yue Zhao, Jun Fan (2021) <doi:10.48550/arXiv.2110.11074>.
Author: Yi Lian [aut, cre],
Yi Yang [aut, cph],
Yuwen Gu [aut],
Jun Fan [aut],
Yue Zhao [aut],
Robert W. Platt [aut]
Maintainer: Yi Lian <yi.lian@mail.mcgill.ca>
Diff between free versions 1.0.1 dated 2022-03-02 and 1.0.2 dated 2024-05-23
DESCRIPTION | 12 ++++++------ MD5 | 16 +++++++++------- NAMESPACE | 8 +++++--- R/free-package.R |only R/main.R | 8 -------- build |only man/free-package.Rd | 21 ++++++++++++++++++--- src/Makevars | 2 +- src/Makevars.win | 2 +- src/main.cpp | 2 +- 10 files changed, 41 insertions(+), 30 deletions(-)
Title: Modified Poisson and Least-Squares Regressions for Binary
Outcome
Description: Modified Poisson and least-squares regression analyses for binary outcomes of Zou (2004) <doi:10.1093/aje/kwh090> and Cheung (2007) <doi:10.1093/aje/kwm223> have been standard multivariate analysis methods to estimate risk ratio and risk difference in clinical and epidemiological studies. This R package involves an easy-to-handle function to implement these analyses by simple commands. Missing data analysis tools (multiple imputation) are also involved. Also, recent studies have shown the ordinary robust variance estimator possibly has serious bias under small or moderate sample size situations for these methods. This package also provides computational tools to calculate alternative accurate confidence intervals (Noma and Gosho (2024) <Forthcoming>).
Author: Hisashi Noma [aut, cre]
Maintainer: Hisashi Noma <noma@ism.ac.jp>
Diff between rqlm versions 1.3-1 dated 2024-05-17 and 2.1-1 dated 2024-05-23
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++++---- NAMESPACE | 4 +++- NEWS.md | 4 ++++ R/mi_rqlm.r |only data/exdata03.RData |only man/exdata03.Rd |only man/mi_rqlm.Rd |only man/rqlm-package.Rd | 2 +- 9 files changed, 22 insertions(+), 12 deletions(-)
Title: Bayesian Aoristic Analyses
Description: Provides an alternative approach to aoristic analyses for archaeological datasets by fitting Bayesian parametric growth models and non-parametric random-walk Intrinsic Conditional Autoregressive (ICAR) models on time frequency data (Crema (2024)<doi:10.1111/arcm.12984>). It handles event typo-chronology based timespans defined by start/end date as well as more complex user-provided vector of probabilities.
Author: Enrico Crema [aut, cre]
Maintainer: Enrico Crema <enrico.crema@gmail.com>
Diff between baorista versions 0.1.2 dated 2024-05-21 and 0.1.3 dated 2024-05-23
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md |only R/createProbMat.R | 4 +++- README.md | 10 +++------- inst/doc/using_baorista.html | 4 ++-- 6 files changed, 16 insertions(+), 17 deletions(-)
Title: Goodness-of-Fit Methods for Complete and Right-Censored Data
Description: Graphical tools and goodness-of-fit tests for complete and right-censored data:
1. Kolmogorov-Smirnov, Cramér-von Mises, and Anderson-Darling tests,
which use the empirical distribution function for complete data
and are extended for right-censored data.
2. Generalized chi-squared-type test, which is based on the squared
differences between observed and expected counts using random
cells with right-censored data.
3. A series of graphical tools such as probability or cumulative hazard
plots to guide the decision about the most suitable parametric model
for the data.
Author: Klaus Langohr [aut, cre],
Mireia Besalu [aut],
Matilde Francisco [aut],
Guadalupe Gomez [aut]
Maintainer: Klaus Langohr <klaus.langohr@upc.edu>
Diff between GofCens versions 0.98 dated 2024-03-22 and 1.0 dated 2024-05-23
DESCRIPTION | 12 - MD5 | 34 +-- NAMESPACE | 7 R/ADcens.R | 352 +++++++++++++++++++++++++++++------------ R/CvMcens.R | 354 +++++++++++++++++++++++++++++------------ R/KScens.R | 417 ++++++++++++++++++++++++++++--------------------- R/chisqcens.R | 381 +++++++++++++++++++++++++++++++------------- R/cumhazPlot.R | 19 +- R/gofcens.R | 364 ++++++++++++++++++++++++------------------ R/kmPlot.R | 21 +- R/probPlot.R | 263 ++++++++++++++++++++---------- man/ADcens.Rd | 21 +- man/CvMcens.Rd | 24 +- man/GofCens-package.Rd | 4 man/KScens.Rd | 21 +- man/chisqcens.Rd | 15 - man/gofcens.Rd | 14 - man/probPlot.Rd | 48 ++--- 18 files changed, 1528 insertions(+), 843 deletions(-)
Title: Finds the Archetypal Analysis of a Data Frame
Description: Performs archetypal analysis by using Principal Convex Hull Analysis
under a full control of all algorithmic parameters.
It contains a set of functions for determining the initial solution, the optimal
algorithmic parameters and the optimal number of archetypes.
Post run tools are also available for the assessment of the derived solution.
Morup, M., Hansen, LK (2012) <doi:10.1016/j.neucom.2011.06.033>.
Hochbaum, DS, Shmoys, DB (1985) <doi:10.1287/moor.10.2.180>.
Eddy, WF (1977) <doi:10.1145/355759.355768>.
Barber, CB, Dobkin, DP, Huhdanpaa, HT (1996) <doi:10.1145/235815.235821>.
Christopoulos, DT (2016) <doi:10.2139/ssrn.3043076>.
Falk, A., Becker, A., Dohmen, T., Enke, B., Huffman, D., Sunde, U. (2018), <doi:10.1093/qje/qjy013>.
Christopoulos, DT (2015) <doi:10.1016/j.jastp.2015.03.009> .
Murari, A., Peluso, E., Cianfrani, Gaudio, F., Lungaroni, M., (2019), <doi:10.3390/e21040394>.
Author: Demetris Christopoulos [aut, cre],
David Midgley [ctb],
Sunil Venaik [ctb],
INSEAD Fontainebleau France [fnd]
Maintainer: Demetris Christopoulos <dchristop@econ.uoa.gr>
Diff between archetypal versions 1.3.0 dated 2022-07-04 and 1.3.1 dated 2024-05-23
DESCRIPTION | 10 MD5 | 54 +- NEWS.md | 9 R/archetypal.R | 2 R/plot.archetypal.R | 12 R/plot_archs.R | 18 R/study_AAconvergence.R | 2 R/summary.archetypal.R | 2 build/vignette.rds |binary data/AbsoluteTemperature.RData |binary data/gallupGPS6.RData |binary data/wd2.RData |binary data/wd25.RData |binary data/wd3.RData |binary inst/doc/archetypal.R | 2 inst/doc/archetypal.Rmd | 2 inst/doc/archetypal.html | 859 ++++++++++++++++++++++------------------- man/FurthestSum.Rd | 2 man/archetypal-package.Rd | 4 man/archetypal.Rd | 44 +- man/check_Bmatrix.Rd | 34 - man/find_closer_points.Rd | 2 man/gallupGPS6.Rd | 9 man/kappa_tools.Rd | 17 man/plot.kappa_tools.Rd | 2 man/plot_archs.Rd | 2 man/study_AAconvergence.Rd | 52 +- vignettes/archetypal.Rmd | 2 28 files changed, 611 insertions(+), 531 deletions(-)
More information about probstats4econ at CRAN
Permanent link
Title: Genomic Prediction of Hybrid Performance
Description: Performs genomic prediction of hybrid performance using eight GS methods including GBLUP, BayesB, RKHS, PLS, LASSO, Elastic net, LightGBM and XGBoost. It also provides fast cross-validation and mating design scheme for training population (Xu S et al (2016) <doi:10.1111/tpj.13242>; Xu S (2017) <doi:10.1534/g3.116.038059>).
Author: Yang Xu, Guangning Yu, Yanru Cui, Shizhong Xu, Chenwu Xu
Maintainer: Yang Xu <xuyang_89@126.com>
Diff between predhy versions 2.1.0 dated 2024-03-29 and 2.1.1 dated 2024-05-23
DESCRIPTION | 6 +- MD5 | 14 ++-- R/cv.R | 135 ++++++++++++++++++++++++--------------------- R/predhy.predict.R | 109 +++++++++++++++++------------------- R/predhy.predict_NCII.R | 27 ++++----- man/cv.Rd | 15 ++--- man/predhy.predict.Rd | 15 ++--- man/predhy.predict_NCII.Rd | 13 +--- 8 files changed, 165 insertions(+), 169 deletions(-)
Title: Multi-Reader, Multi-Case Analysis Methods (ROC, Agreement, and
Other Metrics)
Description: This software does Multi-Reader, Multi-Case (MRMC) analyses of data from imaging studies where clinicians (readers) evaluate patient images (cases). What does this mean? ... Many imaging studies are designed so that every reader reads every case in all modalities, a fully-crossed study. In this case, the data is cross-correlated, and we consider the readers and cases to be cross-correlated random effects. An MRMC analysis accounts for the variability and correlations from the readers and cases when estimating variances, confidence intervals, and p-values. The functions in this package can treat arbitrary study designs and studies with missing data, not just fully-crossed study designs. An overview of this software, including references presenting details on the methods, can be found here: <https://www.fda.gov/medical-devices/science-and-research-medical-devices/imrmc-software-do-multi-reader-multi-case-statistical-analysis-reader-studies>.
Author: Brandon Gallas
Maintainer: Brandon Gallas <Brandon.Gallas@fda.hhs.gov>
Diff between iMRMC versions 1.2.5 dated 2023-05-15 and 2.0.0 dated 2024-05-23
iMRMC-1.2.5/iMRMC/R/iMRMC.R |only iMRMC-1.2.5/iMRMC/man/convertDF.Rd |only iMRMC-1.2.5/iMRMC/tests/testthat/doIMRMCquickTest.R |only iMRMC-1.2.5/iMRMC/tests/testthat/test_doIMRMC.R |only iMRMC-1.2.5/iMRMC/tests/testthat/test_doIMRMC.Rdata |only iMRMC-1.2.5/iMRMC/tests/testthat/test_doIMRMCfromFile.R |only iMRMC-2.0.0/iMRMC/DESCRIPTION | 27 iMRMC-2.0.0/iMRMC/MD5 | 88 iMRMC-2.0.0/iMRMC/NAMESPACE | 8 iMRMC-2.0.0/iMRMC/NEWS.md | 36 iMRMC-2.0.0/iMRMC/R/data.R |only iMRMC-2.0.0/iMRMC/R/doAUCMRMC.R |only iMRMC-2.0.0/iMRMC/R/doROCcurveMRMC.R |only iMRMC-2.0.0/iMRMC/R/iMRMC_R.R |only iMRMC-2.0.0/iMRMC/R/iMRMC_java.R |only iMRMC-2.0.0/iMRMC/R/limitsOfAgreement.R | 111 iMRMC-2.0.0/iMRMC/R/simMRMC.R | 243 - iMRMC-2.0.0/iMRMC/R/uStats.R | 234 - iMRMC-2.0.0/iMRMC/R/utils.R | 355 +- iMRMC-2.0.0/iMRMC/data/dfMRMC_example.rda |only iMRMC-2.0.0/iMRMC/inst/extra/man/iMRMC_2.0.0.pdf |only iMRMC-2.0.0/iMRMC/man/convertDFtoDesignMatrix.Rd | 2 iMRMC-2.0.0/iMRMC/man/convertDFtoScoreMatrix.Rd | 2 iMRMC-2.0.0/iMRMC/man/createIMRMCdf.Rd | 3 iMRMC-2.0.0/iMRMC/man/deleteCol.Rd |only iMRMC-2.0.0/iMRMC/man/dfMRMC_example.Rd |only iMRMC-2.0.0/iMRMC/man/doAUCmrmc.Rd |only iMRMC-2.0.0/iMRMC/man/doIMRMC.Rd | 160 iMRMC-2.0.0/iMRMC/man/doIMRMC_java.Rd |only iMRMC-2.0.0/iMRMC/man/doROCavg.Rd |only iMRMC-2.0.0/iMRMC/man/doROCcurveMRMC.Rd |only iMRMC-2.0.0/iMRMC/man/doROCxy.Rd |only iMRMC-2.0.0/iMRMC/man/doROCxyMRMC.Rd |only iMRMC-2.0.0/iMRMC/man/extractPairedComparisonsWRBM.Rd | 4 iMRMC-2.0.0/iMRMC/man/getBRBM.Rd | 4 iMRMC-2.0.0/iMRMC/man/getMRMCdataset.Rd |only iMRMC-2.0.0/iMRMC/man/getWRBM.Rd | 10 iMRMC-2.0.0/iMRMC/man/init.lecuyerRNG.Rd | 2 iMRMC-2.0.0/iMRMC/man/laBRBM.Rd | 12 iMRMC-2.0.0/iMRMC/man/laWRBM.Rd | 14 iMRMC-2.0.0/iMRMC/man/roc2binary.Rd | 11 iMRMC-2.0.0/iMRMC/man/roeMetzConfigs.Rd | 58 iMRMC-2.0.0/iMRMC/man/sim.gRoeMetz.Rd | 71 iMRMC-2.0.0/iMRMC/man/sim.gRoeMetz.config.Rd | 2 iMRMC-2.0.0/iMRMC/man/simMRMC.Rd | 12 iMRMC-2.0.0/iMRMC/man/simRoeMetz.example.Rd | 2 iMRMC-2.0.0/iMRMC/man/uStat11.Rd | 12 iMRMC-2.0.0/iMRMC/tests/testthat/Rplots.pdf |binary iMRMC-2.0.0/iMRMC/tests/testthat/drafts |only iMRMC-2.0.0/iMRMC/tests/testthat/input.imrmc | 1764 +++++------ iMRMC-2.0.0/iMRMC/tests/testthat/test_createANDundoIMRMCdf.R | 61 iMRMC-2.0.0/iMRMC/tests/testthat/test_doIMRMC_R1.R |only iMRMC-2.0.0/iMRMC/tests/testthat/test_doIMRMC_R1.rda |only iMRMC-2.0.0/iMRMC/tests/testthat/test_doIMRMC_R2.R |only iMRMC-2.0.0/iMRMC/tests/testthat/test_doIMRMC_R2.rda |only iMRMC-2.0.0/iMRMC/tests/testthat/test_doIMRMC_R3.R |only iMRMC-2.0.0/iMRMC/tests/testthat/test_doIMRMC_R3.rda |only iMRMC-2.0.0/iMRMC/tests/testthat/test_roc2binary.R |only 58 files changed, 1724 insertions(+), 1584 deletions(-)
Title: Data Only Package to 'healthyR'
Description: Provides data for functions typically used in the 'healthyR' package.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between healthyR.data versions 1.0.3 dated 2023-05-05 and 1.1.0 dated 2024-05-23
DESCRIPTION | 12 +- MD5 | 61 ++++++----- NAMESPACE | 4 NEWS.md | 15 ++ R/00-global-variables.R |only R/dl-cms-data.R |only R/dl-cur-hosp-data-dict.R | 130 ++++++++++++------------- R/dl-cur-hosp-data.R | 199 +++++++++++++++++++-------------------- R/dl-provider-data.R |only R/get-cms-meta-data.R |only R/get-cur-asc-data.R | 158 +++++++++++++++--------------- R/get-cur-asc-qr-data.R | 166 ++++++++++++++++---------------- R/get-cur-comp-death-data.R | 166 ++++++++++++++++---------------- R/get-cur-hai-data.R | 166 ++++++++++++++++---------------- R/get-cur-hcahps-data.R | 168 ++++++++++++++++---------------- R/get-cur-hvbp-data.R | 174 +++++++++++++++++----------------- R/get-cur-image-efficiency.R | 166 ++++++++++++++++---------------- R/get-cur-maternal-data.R | 166 ++++++++++++++++---------------- R/get-cur-opqr-data.R | 166 ++++++++++++++++---------------- R/get-cur-payment-data.R | 166 ++++++++++++++++---------------- R/get-cur-pch-hcahps-data.R | 166 ++++++++++++++++---------------- R/get-cur-pch-oncology-data.R | 126 ++++++++++++------------ R/get-cur-pch-outcomes-data.R | 162 +++++++++++++++---------------- R/get-cur-pchhai-hosp-data.R | 126 ++++++++++++------------ R/get-cur-timely-eff-care-data.R | 166 ++++++++++++++++---------------- R/get-cur-unplanned-hosp-data.R | 166 ++++++++++++++++---------------- R/get-cur-va-data.R | 170 ++++++++++++++++----------------- R/get-provider-meta-data.R |only README.md | 3 man/current_hosp_data.Rd | 5 man/current_hosp_data_dict.Rd | 74 +++++++------- man/current_va_data.Rd | 142 +++++++++++++-------------- man/fetch_cms_data.Rd |only man/fetch_provider_data.Rd |only man/get_cms_meta_data.Rd |only man/get_provider_meta_data.Rd |only 36 files changed, 1711 insertions(+), 1678 deletions(-)
Title: Compute, Handle and Plot Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise
incidence from dated events for a defined time interval. Dates can be
provided in various standard formats. The class 'incidence2' is used to store
computed incidence and can be easily manipulated, subsetted, and plotted.
This package is part of the RECON (<https://www.repidemicsconsortium.org/>)
toolkit for outbreak analysis (<https://www.reconverse.org>).
Author: Tim Taylor [aut, cre] ,
Thibaut Jombart [ctb]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between incidence2 versions 2.2.3 dated 2023-12-05 and 2.3.0 dated 2024-05-23
incidence2-2.2.3/incidence2/R/coercion.R |only incidence2-2.2.3/incidence2/R/s3_register.R |only incidence2-2.2.3/incidence2/R/zzz.R |only incidence2-2.2.3/incidence2/man/print.incidence2.Rd |only incidence2-2.2.3/incidence2/man/s3_register.Rd |only incidence2-2.3.0/incidence2/DESCRIPTION | 17 incidence2-2.3.0/incidence2/MD5 | 106 incidence2-2.3.0/incidence2/NAMESPACE | 33 incidence2-2.3.0/incidence2/NEWS.md | 160 incidence2-2.3.0/incidence2/R/accessors.R | 5 incidence2-2.3.0/incidence2/R/as.data.frame.R |only incidence2-2.3.0/incidence2/R/as.data.table.R |only incidence2-2.3.0/incidence2/R/as_incidence.R |only incidence2-2.3.0/incidence2/R/as_tibble.R |only incidence2-2.3.0/incidence2/R/bootstrap.R |only incidence2-2.3.0/incidence2/R/complete_dates.R | 14 incidence2-2.3.0/incidence2/R/cumulate.R | 7 incidence2-2.3.0/incidence2/R/estimate_peak.R |only incidence2-2.3.0/incidence2/R/incidence.R | 444 +- incidence2-2.3.0/incidence2/R/incidence2-package.R | 4 incidence2-2.3.0/incidence2/R/keep.R | 27 incidence2-2.3.0/incidence2/R/mutate.R |only incidence2-2.3.0/incidence2/R/nest.R |only incidence2-2.3.0/incidence2/R/palettes.R | 4 incidence2-2.3.0/incidence2/R/plot.R | 37 incidence2-2.3.0/incidence2/R/printing.R | 36 incidence2-2.3.0/incidence2/R/rbind.R |only incidence2-2.3.0/incidence2/R/regroup.R | 98 incidence2-2.3.0/incidence2/R/split.R |only incidence2-2.3.0/incidence2/R/subset.R | 28 incidence2-2.3.0/incidence2/R/summarise.R |only incidence2-2.3.0/incidence2/R/summary.R | 5 incidence2-2.3.0/incidence2/R/utils.R | 22 incidence2-2.3.0/incidence2/README.md | 27 incidence2-2.3.0/incidence2/build/vignette.rds |binary incidence2-2.3.0/incidence2/inst/doc/incidence2.R | 264 - incidence2-2.3.0/incidence2/inst/doc/incidence2.Rmd | 602 +- incidence2-2.3.0/incidence2/inst/doc/incidence2.html | 2121 +++++----- incidence2-2.3.0/incidence2/man/accessors.Rd | 5 incidence2-2.3.0/incidence2/man/as.data.frame.incidence2.Rd | 10 incidence2-2.3.0/incidence2/man/as.data.table.incidence2.Rd |only incidence2-2.3.0/incidence2/man/as_incidence.Rd | 2 incidence2-2.3.0/incidence2/man/as_tibble.incidence2.Rd |only incidence2-2.3.0/incidence2/man/bootstrap_incidence.Rd |only incidence2-2.3.0/incidence2/man/complete_dates.Rd | 13 incidence2-2.3.0/incidence2/man/cumulate.Rd | 7 incidence2-2.3.0/incidence2/man/estimate_peak.Rd |only incidence2-2.3.0/incidence2/man/incidence.Rd | 58 incidence2-2.3.0/incidence2/man/incidence_.Rd |only incidence2-2.3.0/incidence2/man/keep.Rd | 21 incidence2-2.3.0/incidence2/man/mutate.incidence2.Rd |only incidence2-2.3.0/incidence2/man/nest.incidence2.Rd |only incidence2-2.3.0/incidence2/man/palettes.Rd | 2 incidence2-2.3.0/incidence2/man/plot.incidence2.Rd | 37 incidence2-2.3.0/incidence2/man/reexports.Rd |only incidence2-2.3.0/incidence2/man/regroup.Rd | 16 incidence2-2.3.0/incidence2/man/regroup_.Rd |only incidence2-2.3.0/incidence2/man/split.incidence2.Rd |only incidence2-2.3.0/incidence2/man/summarise.incidence2.Rd |only incidence2-2.3.0/incidence2/man/summary.incidence2.Rd | 5 incidence2-2.3.0/incidence2/tests/testthat/test-bootstrap.R |only incidence2-2.3.0/incidence2/tests/testthat/test-complete_dates.R | 19 incidence2-2.3.0/incidence2/tests/testthat/test-incidence.R | 27 incidence2-2.3.0/incidence2/tests/testthat/test-incidence_.R |only incidence2-2.3.0/incidence2/tests/testthat/test-mutate.R |only incidence2-2.3.0/incidence2/tests/testthat/test-nest.R |only incidence2-2.3.0/incidence2/tests/testthat/test-regroup_.R |only incidence2-2.3.0/incidence2/tests/testthat/test-split.R |only incidence2-2.3.0/incidence2/tests/testthat/test-subsetting_and_dplyr.R | 11 incidence2-2.3.0/incidence2/tests/testthat/test-summarise.R |only incidence2-2.3.0/incidence2/vignettes/incidence2.Rmd | 602 +- 71 files changed, 2974 insertions(+), 1922 deletions(-)
Title: Tools for Processing and Analyzing Files from the Hydrological
Catchment Model HYPE
Description: Work with model files (setup, input, output) from
the hydrological catchment model HYPE: Streamlined file import and export, standard
evaluation plot routines, diverse post-processing and aggregation routines
for hydrological model analysis.
Author: Rene Capell [aut, cre] ,
Conrad Brendel [aut] ,
Jafet Andersson [ctb],
David Gustafsson [ctb],
Jude Musuuza [ctb],
Jude Lubega [ctb]
Maintainer: Rene Capell <hypetools.rene@smhi.se>
Diff between HYPEtools versions 1.6.1 dated 2024-01-12 and 1.6.2 dated 2024-05-23
DESCRIPTION | 8 - MD5 | 136 +++++++++++++------------- NAMESPACE | 4 NEWS.md | 16 ++- R/class_HypeGeoData.R | 2 R/class_HypeMultiVar.R | 2 R/class_HypeSingleVar.R | 2 R/class_HypeXobs.R | 2 R/function_AllUpstreamSubids.R | 2 R/function_CompareFiles.R | 10 + R/function_CreateOptpar.R | 4 R/function_GwRetention.R | 6 - R/function_InfoManipulation.R | 2 R/function_OutletNearObs.R | 8 - R/function_PlotAnnualRegime.R | 2 R/function_PlotBasinOutput.R | 2 R/function_PlotBasinSummary.R | 2 R/function_PlotMapPoints.R | 2 R/function_ReadWsOutput.R | 2 R/function_ScaleAquiferData.R |only R/function_ScaleFloodData.R |only R/function_ScalePar.R | 165 ++++++++++++++++++++++++++------ R/function_SimToPar.R | 4 R/function_VariableLookup.R | 4 R/functioncollection_HypeSubidChecks.R | 6 - R/functioncollection_export.R | 41 +++++-- R/functioncollection_import.R | 69 ++++++++----- R/sysdata.rda |binary build/vignette.rds |binary inst/demo_model/AquiferData_Example.txt |only inst/demo_model/FloodData_Example.txt |only inst/doc/analyze_hype_ts.html | 2 inst/doc/basin_characteristics.html | 2 inst/doc/basin_network.html | 4 inst/doc/import_files.Rmd | 2 inst/doc/import_files.html | 20 ++- inst/doc/modify_par.html | 2 inst/doc/plot_map_statistics.html | 6 - man/AllUpstreamSubids.Rd | 2 man/CompareFiles.Rd | 6 - man/CreateOptpar.Rd | 4 man/GwRetention.Rd | 4 man/HypeDataExport.Rd | 23 ++-- man/HypeDataImport.Rd | 35 ++++-- man/HypeGeoData.Rd | 2 man/HypeMultiVar.Rd | 2 man/HypeSingleVar.Rd | 2 man/HypeSubidChecks.Rd | 6 - man/HypeXobs.Rd | 2 man/InfoManipulation.Rd | 78 +++++++-------- man/OutletNearObs.Rd | 8 - man/PlotAnnualRegime.Rd | 2 man/PlotBasinOutput.Rd | 2 man/PlotBasinSummary.Rd | 2 man/PlotMapPoints.Rd | 2 man/ReadClassData.Rd | 86 ++++++++-------- man/ReadGeoClass.Rd | 2 man/ReadInfo.Rd | 2 man/ReadMapOutput.Rd | 4 man/ReadObs.Rd | 2 man/ReadOptpar.Rd | 2 man/ReadPmsf.Rd | 2 man/ReadSimass.Rd | 4 man/ReadTimeOutput.Rd | 8 - man/ReadWsOutput.Rd | 2 man/ReadXobs.Rd | 2 man/ScaleAquiferData.Rd |only man/ScaleFloodData.Rd |only man/ScalePar.Rd | 48 ++++++--- man/VariableLookup.Rd | 2 man/WriteObs.Rd | 2 vignettes/import_files.Rmd | 2 72 files changed, 554 insertions(+), 339 deletions(-)
Title: Implementation of the Vegetation Model ModVege
Description: Run grass growth simulations using a grass growth model based
on ModVege (Jouven, M., P. Carrère, and R. Baumont "Model Predicting
Dynamics of Biomass, Structure and Digestibility of Herbage in Managed
Permanent Pastures. 1. Model Description." (2006)
<doi:10.1111/j.1365-2494.2006.00515.x>). The implementation in
this package contains a few additions to the above cited version of ModVege,
such as simulations of management decisions, and influences of snow cover.
As such, the model is fit to simulate grass growth in mountainous
regions, such as the Swiss Alps. The package also contains routines for
calibrating the model and helpful tools for analysing model outputs and
performance.
Author: Kevin Kramer [aut, cre, cph]
Maintainer: Kevin Kramer <kevin.pasqual.kramer@protonmail.ch>
Diff between growR versions 1.2.0 dated 2023-12-14 and 1.3.0 dated 2024-05-23
DESCRIPTION | 8 MD5 | 47 NAMESPACE | 3 NEWS.md | 34 R/modvegesite.R | 200 +- R/parameters.R | 5 R/run.R | 21 R/support_functions.R | 123 + README.md | 157 +- build/partial.rdb |binary inst/doc/calibration.html | 30 inst/doc/growR.R | 2 inst/doc/growR.Rmd | 21 inst/doc/growR.html | 205 +- inst/doc/parameter_descriptions.html | 8 man/ModvegeParameters.Rd | 7 man/ModvegeSite.Rd | 76 - man/autocut.Rd | 2 man/growR_run_loop.Rd | 8 man/start_of_growing_season.Rd |only man/start_of_growing_season_mtd.Rd |only man/weighted_temperature_sum.Rd |only tests/testthat/_snaps/modvegesite/modvege_reference_output.dat | 735 +++++----- tests/testthat/_snaps/parameters/parameterdata_default_values.dat | 6 vignettes/children/parameters.Rmd | 10 vignettes/growR.Rmd | 21 26 files changed, 1064 insertions(+), 665 deletions(-)
Title: Fast, Dependency-Free Geodesic Distance Calculations
Description: Dependency-free, ultra fast calculation of geodesic
distances. Includes the reference nanometre-accuracy geodesic
distances of Karney (2013) <doi:10.1007/s00190-012-0578-z>, as used by
the 'sf' package, as well as Haversine and Vincenty distances. Default
distance measure is the "Mapbox cheap ruler" which is generally more
accurate than Haversine or Vincenty for distances out to a few hundred
kilometres, and is considerably faster. The main function accepts one
or two inputs in almost any generic rectangular form, and returns
either matrices of pairwise distances, or vectors of sequential
distances.
Author: Mark Padgham [aut, cre],
Michael D. Sumner [aut],
Charles F.F Karney [cph]
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between geodist versions 0.0.8 dated 2022-10-19 and 0.1.0 dated 2024-05-23
geodist-0.0.8/geodist/inst/CITATION |only geodist-0.1.0/geodist/DESCRIPTION | 11 geodist-0.1.0/geodist/MD5 | 55 +- geodist-0.1.0/geodist/NAMESPACE | 1 geodist-0.1.0/geodist/NEWS.md | 6 geodist-0.1.0/geodist/R/geodist-min.R |only geodist-0.1.0/geodist/R/geodist-package.r | 2 geodist-0.1.0/geodist/R/geodist-vec.R | 60 +- geodist-0.1.0/geodist/R/geodist.R | 61 +- geodist-0.1.0/geodist/R/georange.R | 34 - geodist-0.1.0/geodist/R/utils.R | 88 ++- geodist-0.1.0/geodist/build/partial.rdb |only geodist-0.1.0/geodist/build/vignette.rds |binary geodist-0.1.0/geodist/inst/WORDLIST | 16 geodist-0.1.0/geodist/inst/doc/geodist.R | 125 +++-- geodist-0.1.0/geodist/inst/doc/geodist.Rmd | 127 +++-- geodist-0.1.0/geodist/inst/doc/geodist.html | 78 +-- geodist-0.1.0/geodist/man/geodist.Rd | 28 + geodist-0.1.0/geodist/man/geodist_min.Rd |only geodist-0.1.0/geodist/man/geodist_vec.Rd | 4 geodist-0.1.0/geodist/man/georange.Rd | 2 geodist-0.1.0/geodist/src/dists_xy_min.c |only geodist-0.1.0/geodist/src/dists_xy_min.h |only geodist-0.1.0/geodist/src/geodist_init.c | 8 geodist-0.1.0/geodist/src/kdtree.c |only geodist-0.1.0/geodist/src/kdtree.h |only geodist-0.1.0/geodist/tests/testthat.R | 6 geodist-0.1.0/geodist/tests/testthat/test-geodist-min.R |only geodist-0.1.0/geodist/tests/testthat/test-geodist.R | 356 ++++++++------- geodist-0.1.0/geodist/tests/testthat/test-georange.R | 278 ++++++----- geodist-0.1.0/geodist/tests/testthat/test-input-format.R | 167 ++++--- geodist-0.1.0/geodist/tests/testthat/test-measures.R | 73 +-- geodist-0.1.0/geodist/vignettes/geodist.Rmd | 127 +++-- 33 files changed, 1003 insertions(+), 710 deletions(-)
Title: Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It implements the comprehensive workflow for science mapping analysis proposed in Aria M. and
Cuccurullo C. (2017) <doi:10.1016/j.joi.2017.08.007>.
'bibliometrix' provides various routines for importing bibliographic data from 'SCOPUS',
'Clarivate Analytics Web of Science' (<https://www.webofknowledge.com/>), 'Digital Science Dimensions'
(<https://www.dimensions.ai/>), 'OpenAlex' (<https://openalex.org/>), 'Cochrane Library' (<https://www.cochranelibrary.com/>), 'Lens' (<https://lens.org>),
and 'PubMed' (<https://pubmed.ncbi.nlm.nih.gov/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut, cph] ,
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 4.2.1 dated 2024-04-30 and 4.2.2 dated 2024-05-23
DESCRIPTION | 10 ++++-- MD5 | 22 +++++++-------- R/metaTagExtraction.R | 3 ++ R/sysdata.rda |binary build/partial.rdb |binary data/bibtag.rda |binary data/countries.rda |binary data/customTheme.rda |binary data/logo.rda |binary data/stopwords.rda |binary inst/biblioshiny/server.R | 66 ++++++++++++++++++++-------------------------- inst/biblioshiny/utils.R | 4 +- 12 files changed, 52 insertions(+), 53 deletions(-)
Title: Bayesian Post-Estimation on the Mean Scale
Description: Computes Bayesian posterior distributions of predictions, marginal effects, and differences of marginal effects for various generalized linear models. Importantly, the posteriors are on the mean (response) scale, allowing for more natural interpretation than summaries on the link scale. Also, predictions and marginal effects of the count probabilities for Poisson and negative binomial models can be computed.
Author: David M. Dalenberg [aut, cre]
Maintainer: David M. Dalenberg <dalenbe2@gmail.com>
Diff between bayesMeanScale versions 0.1.2 dated 2024-05-18 and 0.1.3 dated 2024-05-23
DESCRIPTION | 8 MD5 | 40 ++-- NEWS.md | 7 inst/doc/introduction.R | 16 + inst/doc/introduction.Rmd | 16 + inst/doc/introduction.html | 178 +++++++++----------- tests/testthat/test-bayes-count-marg-effects.R | 10 - tests/testthat/test-bayes-count-preds.R | 40 +--- tests/testthat/test-bayes-preds.R | 11 - tests/testthat/test-count-marg-effect-error-check.R | 1 tests/testthat/test-count-preds-error-check.R | 1 tests/testthat/test-data-check.R | 2 tests/testthat/test-levels-prep.R | 2 tests/testthat/test-marg-compare-error-check.R | 1 tests/testthat/test-marg-compare.R | 1 tests/testthat/test-marg-effects-error-check.R | 1 tests/testthat/test-marg-effects.R | 20 -- tests/testthat/test-modify-formula.R | 2 tests/testthat/test-new-value.R | 1 tests/testthat/test-preds-error-check.R | 1 vignettes/introduction.Rmd | 16 + 21 files changed, 172 insertions(+), 203 deletions(-)
More information about bayesMeanScale at CRAN
Permanent link
Title: Phylogenetic Analysis with Discrete Character Data
Description: Reconstruct phylogenetic trees from discrete data.
Inapplicable character states are handled using the algorithm of Brazeau,
Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083> with the "Morphy"
library, under equal or implied step weights.
Contains a "shiny" user interface for interactive tree search and exploration
of results, including character visualization, rogue taxon detection,
tree space mapping, and cluster consensus trees (Smith 2022a, b)
<doi:10.1093/sysbio/syab099>, <doi:10.1093/sysbio/syab100>.
Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>,
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>
and custom optimality criteria are implemented.
Author: Martin R. Smith [aut, cre, cph]
,
Martin Brazeau [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeSearch versions 1.5.0 dated 2024-04-03 and 1.5.1 dated 2024-05-23
DESCRIPTION | 6 - MD5 | 36 ++++---- NEWS.md | 7 + R/SPR.R | 99 +++++++++++++++------- R/TBR.R | 135 ++++++++++++++++++++++--------- R/length_range.R | 2 build/partial.rdb |binary inst/REFERENCES.bib | 2 inst/WORDLIST | 1 inst/doc/custom.html | 33 +++---- inst/doc/getting-started.html | 6 - inst/doc/profile-scores.html | 7 - inst/doc/profile.html | 9 +- inst/doc/tree-search.html | 23 ++--- inst/doc/tree-space.html | 13 +- man/MinimumLength.Rd | 2 man/TBR.Rd | 4 tests/testthat/test-length_range.R | 2 tests/testthat/test-zzz-tree-rearrange.R | 2 19 files changed, 248 insertions(+), 141 deletions(-)
Title: An Implementation of Z-Curves
Description: An implementation of z-curves - a method for estimating expected discovery
and replicability rates on the bases of test-statistics of published studies. The package
provides functions for fitting the new density and EM version
(Bartoš & Schimmack, 2020, <doi:10.31234/osf.io/urgtn>), censored observations,
as well as the original density z-curve (Brunner & Schimmack, 2020, <doi:10.15626/MP.2018.874>).
Furthermore, the package provides summarizing and plotting functions for the fitted z-curve objects.
See the aforementioned articles for more information about the z-curves, expected discovery
and replicability rates, validation studies, and limitations.
Author: Frantisek Bartos [aut, cre],
Ulrich Schimmack [aut]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between zcurve versions 2.4.0 dated 2023-10-27 and 2.4.1 dated 2024-05-23
DESCRIPTION | 7 +++-- MD5 | 16 ++++++------- R/data-preparation.R | 51 ++++++++++++++++++++++++++++++++----------- R/main.R | 31 ++++++++++++++++++++------ R/zcurve_clustered.R | 12 +++++++++- build/partial.rdb |binary man/zcurve-package.Rd | 1 man/zcurve_data.Rd | 12 +++++----- tests/testthat/test-zcurve.R | 8 +++--- 9 files changed, 96 insertions(+), 42 deletions(-)
Title: Interface to the Global Biodiversity Information Facility API
Description: A programmatic interface to the Web Service methods
provided by the Global Biodiversity Information Facility (GBIF;
<https://www.gbif.org/developer/summary>). GBIF is a database
of species occurrence records from sources all over the globe.
rgbif includes functions for searching for taxonomic names,
retrieving information on data providers, getting species occurrence
records, getting counts of occurrence records, and using the GBIF
tile map service to make rasters summarizing huge amounts of data.
Author: Scott Chamberlain [aut] ,
Damiano Oldoni [aut] ,
Vijay Barve [ctb] ,
Peter Desmet [ctb] ,
Laurens Geffert [ctb],
Dan Mcglinn [ctb] ,
Karthik Ram [ctb] ,
rOpenSci [fnd] ,
John Waller [aut, cre]
Maintainer: John Waller <jwaller@gbif.org>
Diff between rgbif versions 3.7.9 dated 2024-01-11 and 3.8.0 dated 2024-05-23
rgbif-3.7.9/rgbif/tests/fixtures/datasets_checklist.yml |only rgbif-3.7.9/rgbif/tests/fixtures/datasets_contact.yml |only rgbif-3.7.9/rgbif/tests/fixtures/datasets_metadata.yml |only rgbif-3.7.9/rgbif/tests/fixtures/datasets_single.yml |only rgbif-3.7.9/rgbif/tests/fixtures/gbif_citation_datasetkey.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_download_cancel.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_get.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_get_other.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_metadata.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_catalognumber.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_coordinateUncertaintyInMeters.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_degreeOfEstablishment.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_depth.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_distanceFromCentroidInMeters.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_elevation.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_eventId.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_fails_well.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_gadmGid.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_hierarchy_data.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_identifiedBy.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_isInCluster.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_iucnRedListCategory.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_key_gbifid_character_class.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_lifeStage.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_many_inputs.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_networkKey.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_occurrenceId.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_occurrencestatus.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_organismQuantity.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_organismQuantityType.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_relativeOrganismQuantity.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_scientificname.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_speciesKey.yml |only rgbif-3.7.9/rgbif/tests/fixtures/occ_search_verbatimScientificName.yml |only rgbif-3.7.9/rgbif/tests/fixtures/organizations_search_country.yml |only rgbif-3.7.9/rgbif/tests/fixtures/organizations_search_uuid.yml |only rgbif-3.7.9/rgbif/tests/fixtures/wkt_large_occ_data.yml |only rgbif-3.7.9/rgbif/tests/fixtures/wkt_large_occ_search.yml |only rgbif-3.7.9/rgbif/tests/testthat/test-datasets.r |only rgbif-3.8.0/rgbif/DESCRIPTION | 6 rgbif-3.8.0/rgbif/MD5 | 307 rgbif-3.8.0/rgbif/NAMESPACE | 2 rgbif-3.8.0/rgbif/NEWS.md | 27 rgbif-3.8.0/rgbif/R/download_predicate_dsl.R | 11 rgbif-3.8.0/rgbif/R/gbif_citation.R | 64 rgbif-3.8.0/rgbif/R/geometry_utils.R | 4 rgbif-3.8.0/rgbif/R/name_lookup.r | 424 rgbif-3.8.0/rgbif/R/occ_count.r | 76 rgbif-3.8.0/rgbif/R/occ_data.R | 271 rgbif-3.8.0/rgbif/R/occ_download.R | 1 rgbif-3.8.0/rgbif/R/occ_download_describe.R |only rgbif-3.8.0/rgbif/R/occ_search.r | 244 rgbif-3.8.0/rgbif/R/wkt_parse.R | 105 rgbif-3.8.0/rgbif/R/zzz.r | 2 rgbif-3.8.0/rgbif/man/download_predicate_dsl.Rd | 1 rgbif-3.8.0/rgbif/man/gbif_citation.Rd | 25 rgbif-3.8.0/rgbif/man/name_lookup.Rd | 3 rgbif-3.8.0/rgbif/man/occ_data.Rd | 551 rgbif-3.8.0/rgbif/man/occ_download.Rd | 1 rgbif-3.8.0/rgbif/man/occ_download_describe.Rd |only rgbif-3.8.0/rgbif/man/occ_search.Rd | 238 rgbif-3.8.0/rgbif/man/wkt_parse.Rd | 11 rgbif-3.8.0/rgbif/tests/fixtures/dataset.yml | 1260 rgbif-3.8.0/rgbif/tests/fixtures/dataset_doi.yml | 9 rgbif-3.8.0/rgbif/tests/fixtures/dataset_list_funs.yml |only rgbif-3.8.0/rgbif/tests/fixtures/dataset_search.yml | 7396 ++--- rgbif-3.8.0/rgbif/tests/fixtures/dataset_search_facet.yml | 47 rgbif-3.8.0/rgbif/tests/fixtures/dataset_suggest.yml | 5287 +--- rgbif-3.8.0/rgbif/tests/fixtures/dataset_suggest_description.yml | 3090 +- rgbif-3.8.0/rgbif/tests/fixtures/dataset_uuid_funs.yml | 2034 - rgbif-3.8.0/rgbif/tests/fixtures/derived_dataset_1.yml | 8 rgbif-3.8.0/rgbif/tests/fixtures/derived_dataset_2.yml | 6 rgbif-3.8.0/rgbif/tests/fixtures/enumeration.yml | 54 rgbif-3.8.0/rgbif/tests/fixtures/enumeration_fails_well.yml | 2 rgbif-3.8.0/rgbif/tests/fixtures/gbif_citation_downloadkey.yml | 2 rgbif-3.8.0/rgbif/tests/fixtures/gbif_citation_occ_download_meta.yml | 2 rgbif-3.8.0/rgbif/tests/fixtures/gbif_oai_get_records.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/gbif_oai_identify.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/gbif_oai_list_identifiers.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/gbif_oai_list_metadataformats.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/gbif_oai_list_sets.yml | 2465 - rgbif-3.8.0/rgbif/tests/fixtures/installations.yml | 3807 +- rgbif-3.8.0/rgbif/tests/fixtures/installations_deleted.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/installations_uuid.yml | 2 rgbif-3.8.0/rgbif/tests/fixtures/installations_uuid_data.yml | 2 rgbif-3.8.0/rgbif/tests/fixtures/map_fetch_png.yml | 1744 - rgbif-3.8.0/rgbif/tests/fixtures/map_fetch_terra.yml | 6717 ++--- rgbif-3.8.0/rgbif/tests/fixtures/name_backbone.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/name_backbone_verbose_true.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/name_issues.yml | 12 rgbif-3.8.0/rgbif/tests/fixtures/name_lookup_constituentKey.yml |only rgbif-3.8.0/rgbif/tests/fixtures/name_lookup_habitat.yml | 470 rgbif-3.8.0/rgbif/tests/fixtures/name_lookup_no_results.yml | 2 rgbif-3.8.0/rgbif/tests/fixtures/name_parse.yml | 26 rgbif-3.8.0/rgbif/tests/fixtures/name_suggest.yml | 2651 +- rgbif-3.8.0/rgbif/tests/fixtures/name_suggest_many_args.yml | 12 rgbif-3.8.0/rgbif/tests/fixtures/name_usage.yml | 241 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_children.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_descriptions.yml | 46 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_distributions.yml | 1206 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_iucnRedListCategory.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_media.yml | 52 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_name.yml | 12 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_parents.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_references.yml | 478 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_related.yml | 2402 - rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_speciesProfiles.yml | 15 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_synonyms.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_typeSpecimens.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_data_vernacularNames.yml | 486 rgbif-3.8.0/rgbif/tests/fixtures/name_usage_fails_well.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/network.yml | 56 rgbif-3.8.0/rgbif/tests/fixtures/network_constituents.yml |13000 ++++------ rgbif-3.8.0/rgbif/tests/fixtures/nodes.yml | 6166 ++-- rgbif-3.8.0/rgbif/tests/fixtures/occ_count.yml | 28 rgbif-3.8.0/rgbif/tests/fixtures/occ_count_.yml | 30 rgbif-3.8.0/rgbif/tests/fixtures/occ_count_facet.yml | 72 rgbif-3.8.0/rgbif/tests/fixtures/occ_count_legacy_params.yml | 20 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_args_with_many_inputs.yml | 3072 +- rgbif-3.8.0/rgbif/tests/fixtures/occ_data_catalog_number.yml | 470 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_coordinateUncertaintyInMeters.yml | 583 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_degreeOfEstablishment.yml | 801 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_depth.yml | 78 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_distanceFromCentroidInMeters.yml | 668 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_dropped_fields.yml | 253 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_elevation.yml | 155 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_eventId.yml | 1035 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_fails_well.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_gadmGid.yml | 679 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_identifiedBy.yml | 1448 - rgbif-3.8.0/rgbif/tests/fixtures/occ_data_isInCluster.yml | 539 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_iucnRedListCategory.yml | 1067 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_key_gbifid_character_class.yml | 504 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_lifeStage.yml | 1045 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_networkKey.yml | 957 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_occurrenceId.yml | 788 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_occurrencestatus.yml | 573 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_organismQuantity.yml | 476 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_organismQuantityType.yml | 317 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_relativeOrganismQuantity.yml | 589 rgbif-3.8.0/rgbif/tests/fixtures/occ_data_scientificname.yml | 1987 - rgbif-3.8.0/rgbif/tests/fixtures/occ_data_speciesKey.yml | 1413 - rgbif-3.8.0/rgbif/tests/fixtures/occ_data_verbatimScientificName.yml | 1441 - rgbif-3.8.0/rgbif/tests/fixtures/occ_download_1.yml | 14 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_2.yml | 18 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_3.yml | 14 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_4.yml | 14 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_5.yml | 10 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_6.yml | 10 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_7.yml | 10 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_8.yml | 10 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_cancel_prep.yml | 10 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_dataset_activity.yml | 44 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_dataset_activity_error.yml | 2 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_datasets.yml | 2 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_datasets_error.yml | 15 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_describe.yml |only rgbif-3.8.0/rgbif/tests/fixtures/occ_download_list.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_list_unauthorized.yml | 2 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_meta.yml | 2 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_meta_na_results.yml | 2 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_meta_with_results.yml | 2 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_queue.yml | 207 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_wait_character.yml | 4 rgbif-3.8.0/rgbif/tests/fixtures/occ_download_wait_request.yml | 1226 rgbif-3.8.0/rgbif/tests/testthat/test-dataset_uuid_funs.R | 1 rgbif-3.8.0/rgbif/tests/testthat/test-gbif_citation.R | 22 rgbif-3.8.0/rgbif/tests/testthat/test-name_lookup.r | 14 rgbif-3.8.0/rgbif/tests/testthat/test-name_suggest.r | 1 rgbif-3.8.0/rgbif/tests/testthat/test-occ_count.r | 1 rgbif-3.8.0/rgbif/tests/testthat/test-occ_data.R | 54 rgbif-3.8.0/rgbif/tests/testthat/test-occ_download.R | 19 rgbif-3.8.0/rgbif/tests/testthat/test-occ_download_describe.R |only rgbif-3.8.0/rgbif/tests/testthat/test-occ_download_prep.R | 3 rgbif-3.8.0/rgbif/tests/testthat/test-occ_get.r | 2 rgbif-3.8.0/rgbif/tests/testthat/test-occ_search.r | 51 rgbif-3.8.0/rgbif/tests/testthat/test-wkt_parse.R | 22 177 files changed, 43863 insertions(+), 42734 deletions(-)
Title: Reimplementations of Functions Introduced Since R-3.0.0
Description: Functions introduced or changed since R v3.0.0 are re-implemented in this
package. The backports are conditionally exported in order to let R resolve
the function name to either the implemented backport, or the respective base
version, if available. Package developers can make use of new functions or
arguments by selectively importing specific backports to
support older installations.
Author: Michel Lang [cre, aut] ,
Duncan Murdoch [aut],
R Core Team [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between backports versions 1.4.1 dated 2021-12-13 and 1.5.0 dated 2024-05-23
DESCRIPTION | 11 +++++++---- MD5 | 31 ++++++++++++++++++++++--------- NAMESPACE | 7 +++++++ NEWS.md | 5 +++++ R/Rconcordance.R |only R/import.R | 12 +++++++----- R/lengths.R | 6 +++++- R/libPaths.R |only R/null_coalesce.R |only R/zzz.R | 1 + README.md | 8 ++++++++ man/as.Rconcordance.Rd |only man/as.Rconcordance.default.Rd |only man/as.character.Rconcordance.Rd |only man/backports-package.Rd | 1 + man/libPaths.Rd |only man/matchConcordance.Rd |only man/null_coalesce_operator.Rd |only man/print.Rconcordance.Rd |only tests/test_Rconcordance.R |only tests/test_dotlibPaths.R |only tests/test_dotsNames.R | 22 ++++++++++++++++++++++ tests/test_null_coalesce.R |only 23 files changed, 85 insertions(+), 19 deletions(-)
Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that
the user is probably willing to make: 'import()' and 'export()' determine
the data format from the file extension, reasonable defaults are used for
data import and export, web-based import is natively supported (including
from SSL/HTTPS), compressed files can be read directly, and fast import
packages are used where appropriate. An additional convenience function,
'convert()', provides a simple method for converting between file types.
Author: Jason Becker [aut],
Chung-hong Chan [aut, cre] ,
David Schoch [aut] ,
Geoffrey CH Chan [ctb],
Thomas J. Leeper [aut] ,
Christopher Gandrud [ctb],
Andrew MacDonald [ctb],
Ista Zahn [ctb],
Stanislaus Stadlmann [ctb],
Ruaridh Williamson [ctb],
Patrick K [...truncated...]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between rio versions 1.0.1 dated 2023-09-19 and 1.1.0 dated 2024-05-23
rio-1.0.1/rio/R/convert_google_url.R |only rio-1.0.1/rio/R/fwf2.R |only rio-1.0.1/rio/tests/testthat/test_format_csv_gz.R |only rio-1.1.0/rio/DESCRIPTION | 30 - rio-1.1.0/rio/MD5 | 157 ++++---- rio-1.1.0/rio/NEWS.md | 24 + rio-1.1.0/rio/R/compression.R | 121 ++++-- rio-1.1.0/rio/R/export.R | 15 rio-1.1.0/rio/R/export_list.R | 9 rio-1.1.0/rio/R/extensions.R | 2 rio-1.1.0/rio/R/import.R | 56 +- rio-1.1.0/rio/R/import_list.R | 81 +--- rio-1.1.0/rio/R/import_methods.R | 84 ++-- rio-1.1.0/rio/R/remote_to_local.R | 113 ++--- rio-1.1.0/rio/R/rio.R | 17 rio-1.1.0/rio/R/set_class.R | 3 rio-1.1.0/rio/R/suggestions.R | 5 rio-1.1.0/rio/R/sysdata.rda |binary rio-1.1.0/rio/R/utils.R | 23 + rio-1.1.0/rio/README.md | 105 ++--- rio-1.1.0/rio/build/vignette.rds |binary rio-1.1.0/rio/inst/doc/labelled.html | 4 rio-1.1.0/rio/inst/doc/philosophy.html | 2 rio-1.1.0/rio/inst/doc/remap.html | 2 rio-1.1.0/rio/inst/doc/rio.R | 18 rio-1.1.0/rio/inst/doc/rio.html | 158 +++++--- rio-1.1.0/rio/man/export.Rd | 3 rio-1.1.0/rio/man/import.Rd | 34 + rio-1.1.0/rio/man/import_list.Rd | 22 - rio-1.1.0/rio/man/rio.Rd | 4 rio-1.1.0/rio/tests/testdata/iris_no_extension_xls |only rio-1.1.0/rio/tests/testthat/test_compress.R | 107 ++++- rio-1.1.0/rio/tests/testthat/test_convert.R | 42 +- rio-1.1.0/rio/tests/testthat/test_errors.R | 28 - rio-1.1.0/rio/tests/testthat/test_export_corner_cases.R | 35 - rio-1.1.0/rio/tests/testthat/test_export_list.R | 109 +++-- rio-1.1.0/rio/tests/testthat/test_extensions.R | 35 - rio-1.1.0/rio/tests/testthat/test_format_R.R | 22 - rio-1.1.0/rio/tests/testthat/test_format_arff.R | 17 rio-1.1.0/rio/tests/testthat/test_format_csv.R | 100 ++--- rio-1.1.0/rio/tests/testthat/test_format_csvy.R | 21 - rio-1.1.0/rio/tests/testthat/test_format_dbf.R | 22 - rio-1.1.0/rio/tests/testthat/test_format_dif.R | 4 rio-1.1.0/rio/tests/testthat/test_format_dta.R | 53 +- rio-1.1.0/rio/tests/testthat/test_format_eviews.R | 4 rio-1.1.0/rio/tests/testthat/test_format_external_packages.R | 20 - rio-1.1.0/rio/tests/testthat/test_format_feather.R | 18 rio-1.1.0/rio/tests/testthat/test_format_fortran.R | 11 rio-1.1.0/rio/tests/testthat/test_format_fst.R | 18 rio-1.1.0/rio/tests/testthat/test_format_fwf.R | 53 +- rio-1.1.0/rio/tests/testthat/test_format_html.R | 43 +- rio-1.1.0/rio/tests/testthat/test_format_json.R | 38 - rio-1.1.0/rio/tests/testthat/test_format_matlab.R | 20 - rio-1.1.0/rio/tests/testthat/test_format_mtp.R | 5 rio-1.1.0/rio/tests/testthat/test_format_ods.R | 52 +- rio-1.1.0/rio/tests/testthat/test_format_parquet.R | 13 rio-1.1.0/rio/tests/testthat/test_format_psv.R | 25 - rio-1.1.0/rio/tests/testthat/test_format_pzfx.R | 36 - rio-1.1.0/rio/tests/testthat/test_format_qs.R | 18 rio-1.1.0/rio/tests/testthat/test_format_rdata.R | 85 ++-- rio-1.1.0/rio/tests/testthat/test_format_rds.R | 27 - rio-1.1.0/rio/tests/testthat/test_format_rec.R | 3 rio-1.1.0/rio/tests/testthat/test_format_sas.R | 24 - rio-1.1.0/rio/tests/testthat/test_format_sav.R | 127 +++--- rio-1.1.0/rio/tests/testthat/test_format_syd.R | 5 rio-1.1.0/rio/tests/testthat/test_format_tsv.R | 24 - rio-1.1.0/rio/tests/testthat/test_format_xls.R | 66 +-- rio-1.1.0/rio/tests/testthat/test_format_xml.R | 34 - rio-1.1.0/rio/tests/testthat/test_format_yml.R | 35 - rio-1.1.0/rio/tests/testthat/test_gather_attrs.R | 4 rio-1.1.0/rio/tests/testthat/test_guess.R | 10 rio-1.1.0/rio/tests/testthat/test_identical.R | 79 ++-- rio-1.1.0/rio/tests/testthat/test_import_list.R | 212 ++++++----- rio-1.1.0/rio/tests/testthat/test_install_formats.R | 2 rio-1.1.0/rio/tests/testthat/test_mapping.R | 47 +- rio-1.1.0/rio/tests/testthat/test_matrix.R | 23 - rio-1.1.0/rio/tests/testthat/test_remote.R | 21 - rio-1.1.0/rio/tests/testthat/test_set_class.R | 43 +- rio-1.1.0/rio/tests/testthat/test_trust.R |only rio-1.1.0/rio/vignettes/philosophy.Rmd | 2 rio-1.1.0/rio/vignettes/remap.Rmd | 2 rio-1.1.0/rio/vignettes/rio.Rmd | 21 - 82 files changed, 1623 insertions(+), 1334 deletions(-)
Title: Statistical Testing for Functional Data
Description: Implementation of two sample comparison procedures based on
median-based statistical tests for functional data, introduced in
Smida et al (2022) <doi:10.1080/10485252.2022.2064997>. Other
competitive state-of-the-art approaches proposed by Chakraborty and
Chaudhuri (2015) <doi:10.1093/biomet/asu072>, Horvath et al (2013)
<doi:10.1111/j.1467-9868.2012.01032.x> or Cuevas et al (2004)
<doi:10.1016/j.csda.2003.10.021> are also included in the package, as
well as procedures to run test result comparisons and power analysis
using simulations.
Author: Zaineb Smida [aut] ,
Ghislain Durif [aut, cre] ,
Lionel Cucala [aut]
Maintainer: Ghislain Durif <gd.dev@libertymail.net>
Diff between funStatTest versions 1.0.2 dated 2023-04-20 and 1.0.3 dated 2024-05-23
funStatTest-1.0.2/funStatTest/R/authorship.R |only funStatTest-1.0.3/funStatTest/DESCRIPTION | 22 +-- funStatTest-1.0.3/funStatTest/MD5 | 67 +++++----- funStatTest-1.0.3/funStatTest/NAMESPACE | 2 funStatTest-1.0.3/funStatTest/R/funstattest_authors.R |only funStatTest-1.0.3/funStatTest/R/import.R | 2 funStatTest-1.0.3/funStatTest/R/power.R | 4 funStatTest-1.0.3/funStatTest/R/pvalues.R | 6 funStatTest-1.0.3/funStatTest/R/simulation.R | 8 - funStatTest-1.0.3/funStatTest/R/statistics.R | 38 ++--- funStatTest-1.0.3/funStatTest/R/utils.R | 10 - funStatTest-1.0.3/funStatTest/README.md | 25 +-- funStatTest-1.0.3/funStatTest/build/partial.rdb |binary funStatTest-1.0.3/funStatTest/build/vignette.rds |binary funStatTest-1.0.3/funStatTest/inst/doc/getting-started-with-functional-statistical-testing.R | 6 funStatTest-1.0.3/funStatTest/inst/doc/getting-started-with-functional-statistical-testing.Rmd | 38 ++++- funStatTest-1.0.3/funStatTest/inst/doc/getting-started-with-functional-statistical-testing.html | 16 +- funStatTest-1.0.3/funStatTest/man/comp_stat.Rd | 3 funStatTest-1.0.3/funStatTest/man/figures/README-data_simu-1.png |binary funStatTest-1.0.3/funStatTest/man/funStatTest_authors.Rd |only funStatTest-1.0.3/funStatTest/man/permut_pval.Rd | 3 funStatTest-1.0.3/funStatTest/man/plot_simu.Rd | 3 funStatTest-1.0.3/funStatTest/man/power_exp.Rd | 3 funStatTest-1.0.3/funStatTest/man/simul_data.Rd | 3 funStatTest-1.0.3/funStatTest/man/simul_traj.Rd | 3 funStatTest-1.0.3/funStatTest/man/stat_cff.Rd | 3 funStatTest-1.0.3/funStatTest/man/stat_hkr.Rd | 3 funStatTest-1.0.3/funStatTest/man/stat_med.Rd | 3 funStatTest-1.0.3/funStatTest/man/stat_mo.Rd | 3 funStatTest-1.0.3/funStatTest/man/stat_wmw.Rd | 3 funStatTest-1.0.3/funStatTest/tests/testthat/test-power.R | 2 funStatTest-1.0.3/funStatTest/tests/testthat/test-pvalues.R | 2 funStatTest-1.0.3/funStatTest/tests/testthat/test-simulation.R | 2 funStatTest-1.0.3/funStatTest/tests/testthat/test-statistics.R | 2 funStatTest-1.0.3/funStatTest/tests/testthat/test-utils.R | 2 funStatTest-1.0.3/funStatTest/vignettes/getting-started-with-functional-statistical-testing.Rmd | 38 ++++- 36 files changed, 200 insertions(+), 125 deletions(-)
Title: Tailored Knowledge Catalog
Description: Facilitate the management of data from knowledge
resources that are frequently used alone or together
in research environments.
In 'TKCat', knowledge resources are manipulated as modeled database (MDB)
objects. These objects provide access to the data tables along with a general
description of the resource and a detail data model documenting the
tables, their fields and their relationships.
These MDBs are then gathered in catalogs that can be easily
explored an shared.
Finally, 'TKCat' provides tools to easily subset, filter and combine MDBs and
create new catalogs suited for specific needs.
Author: Patrice Godard [aut, cre, cph]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between TKCat versions 1.1.7 dated 2024-05-08 and 1.1.8 dated 2024-05-23
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/chMDB.R | 5 ++++- inst/doc/TKCat-KMR-POK.html | 4 ++-- inst/doc/TKCat.html | 36 ++++++++++++++++++------------------ inst/pkgdown.yml | 2 +- 6 files changed, 33 insertions(+), 30 deletions(-)
More information about SoilFunctionality at CRAN
Permanent link
Title: Calculate and Visualize 'SNOTEL' Snow Data and Seasonality
Description: Programmatic interface to the 'SNOTEL' snow data
(<https://www.nrcs.usda.gov/programs-initiatives/sswsf-snow-survey-and-water-supply-forecasting-program>). Provides easy downloads of snow
data into your R work space or a local directory. Additional post-processing
routines to extract snow season indexes are provided.
Author: Koen Hufkens [aut, cre] ,
BlueGreen Labs [cph, fnd]
Maintainer: Koen Hufkens <koen.hufkens@gmail.com>
Diff between snotelr versions 1.2 dated 2023-09-16 and 1.4 dated 2024-05-23
DESCRIPTION | 11 ++--- MD5 | 12 ++--- R/snotel_info.r | 2 R/snotel_phenology.r | 6 +- build/vignette.rds |binary inst/doc/snotelr-vignette.html | 84 ++++++++++++++++++++--------------------- man/snotel_phenology.Rd | 4 + 7 files changed, 62 insertions(+), 57 deletions(-)
Title: Transformations for Unit-Level Small Area Models
Description: The aim of this package is to offer new methodology for unit-level
small area models under transformations and limited population auxiliary
information. In addition to this new methodology, the widely used nested
error regression model without transformations (see "An Error-Components
Model for Prediction of County Crop Areas Using Survey and Satellite Data"
by Battese, Harter and Fuller (1988) <doi:10.1080/01621459.1988.10478561>)
and its well-known uncertainty estimate (see "The estimation of the mean
squared error of small-area estimators" by Prasad and Rao (1990)
<doi:10.1080/01621459.1995.10476570>) are provided. In this package, the
log transformation and the data-driven log-shift transformation are
provided. If a transformation is selected, an appropriate method is chosen
depending on the respective input of the population data: Individual
population data (see "Empirical best prediction under a nested error model
with log transformation" by Molina and Martín (2018)
& [...truncated...]
Author: Nora Wuerz [aut]
Maintainer: Nora Wuerz <nora.wuerz@uni-bamberg.de>
Diff between saeTrafo versions 1.0.2 dated 2023-12-11 and 1.0.3 dated 2024-05-23
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/MSE.R | 24 +++++++++++++++--------- R/framework_NER.R | 1 + R/helping_functions.R | 2 +- 5 files changed, 24 insertions(+), 17 deletions(-)
Title: ILO Open Data via Ilostat Bulk Download Facility
Description: Tools to download data from the ilostat database
<https://ilostat.ilo.org> together with search and
manipulation utilities.
Author: David Bescond [aut, cre] ,
Mabelin Villarreal-Fuentes [ctb]
,
ILO Department of Statistics [cph, fnd]
Maintainer: David Bescond <bescond@ilo.org>
Diff between Rilostat versions 2.0.0 dated 2024-02-20 and 2.1.0 dated 2024-05-23
Rilostat-2.0.0/Rilostat/R/sdmx_ilostat.R |only Rilostat-2.0.0/Rilostat/man/sdmx_ilostat.Rd |only Rilostat-2.1.0/Rilostat/DESCRIPTION | 10 +- Rilostat-2.1.0/Rilostat/MD5 | 26 +++--- Rilostat-2.1.0/Rilostat/NAMESPACE | 7 - Rilostat-2.1.0/Rilostat/NEWS.md | 4 + Rilostat-2.1.0/Rilostat/R/Rilostat.R | 12 --- Rilostat-2.1.0/Rilostat/R/distribution_ilostat.r | 77 +++----------------- Rilostat-2.1.0/Rilostat/R/get_ilostat.R | 30 +++++-- Rilostat-2.1.0/Rilostat/R/get_ilostat_dic.R | 6 - Rilostat-2.1.0/Rilostat/R/get_ilostat_toc.R | 6 - Rilostat-2.1.0/Rilostat/R/label_ilostat.R | 1 Rilostat-2.1.0/Rilostat/README.md | 1 Rilostat-2.1.0/Rilostat/man/Rilostat.Rd | 4 - Rilostat-2.1.0/Rilostat/man/distribution_ilostat.Rd | 5 + 15 files changed, 70 insertions(+), 119 deletions(-)
Title: Add Day/Night Patterns to 'ggplot2' Plots
Description: It provides a custom 'ggplot2' geom to add day/night patterns to plots.
It visually distinguishes daytime and nighttime periods. It is useful for
visualizing data that spans multiple days and for highlighting diurnal patterns.
Author: Gabriel S. Pires [aut, cre, cph]
Maintainer: Gabriel S. Pires <gabriel.slpires@gmail.com>
Diff between ggdaynight versions 0.1.1 dated 2024-05-21 and 0.1.3 dated 2024-05-23
DESCRIPTION | 6 - MD5 | 17 ++- NEWS.md | 6 + R/geom_daynight.R | 77 +++++++++++------ README.md | 13 ++ inst |only man/figures/logo.png |only tests/testthat.R | 25 ++--- tests/testthat/_snaps/geom_daynight/only-daytime.svg |only tests/testthat/_snaps/geom_daynight/only-nighttime.svg |only tests/testthat/test-geom_daynight.R | 74 +++++++++++++++- 11 files changed, 168 insertions(+), 50 deletions(-)
Title: Microbial Community Ecology Data Analysis
Description: A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.
Author: Chi Liu [aut, cre],
Felipe R. P. Mansoldo [ctb],
Minjie Yao [ctb],
Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between microeco versions 1.7.0 dated 2024-05-15 and 1.7.1 dated 2024-05-23
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/microtable.R | 2 +- R/trans_alpha.R | 8 ++++++-- man/microtable.Rd | 2 +- 5 files changed, 15 insertions(+), 11 deletions(-)
Title: Spatial and Environmental Blocking for K-Fold and LOO
Cross-Validation
Description: Creating spatially or environmentally separated folds for cross-validation to provide a robust error estimation in spatially structured environments; Investigating and visualising the effective range of spatial autocorrelation in continuous raster covariates and point samples to find an initial realistic distance band to separate training and testing datasets spatially described in Valavi, R. et al. (2019) <doi:10.1111/2041-210X.13107>.
Author: Roozbeh Valavi [aut, cre] ,
Jane Elith [aut],
Jose Lahoz-Monfort [aut],
Ian Flint [aut],
Gurutzeta Guillera-Arroita [aut]
Maintainer: Roozbeh Valavi <valavi.r@gmail.com>
Diff between blockCV versions 3.1-3 dated 2023-06-04 and 3.1-4 dated 2024-05-23
DESCRIPTION | 10 MD5 | 32 R/RcppExports.R | 14 R/blockCV.R | 61 - R/cv_cluster.R | 2 R/cv_spatial.R | 6 build/vignette.rds |binary inst/doc/tutorial_1.R | 376 +++++----- inst/doc/tutorial_1.html | 1719 +++++++++++++++++++++++------------------------ inst/doc/tutorial_2.R | 345 ++++----- inst/doc/tutorial_2.Rmd | 17 inst/doc/tutorial_2.html | 1343 ++++++++++++++++++------------------ man/blockCV.Rd | 8 man/cv_cluster.Rd | 2 man/cv_spatial.Rd | 4 src/nndm.cpp | 15 vignettes/tutorial_2.Rmd | 17 17 files changed, 1990 insertions(+), 1981 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-11 1.0.0
2023-11-30 0.1.1
2023-11-28 0.1.0
Title: Helper Tools for Australian Hydrologists
Description: Functions to speed up work flow for hydrological analysis.
Focused on Australian climate data (SILO climate data), hydrological models (eWater Source) and in particular South Australia (<https://water.data.sa.gov.au> hydrological data).
Author: Matt Gibbs [aut, cre]
Maintainer: Matt Gibbs <gibbs.ms@gmail.com>
Diff between SWTools versions 1.0.1 dated 2024-02-02 and 1.0.2 dated 2024-05-23
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/SILO.R | 14 +++++++------- R/SILOFindSitesByShapefile.R | 13 +++++-------- 5 files changed, 25 insertions(+), 24 deletions(-)
Title: Causal Moderated Mediation Analysis
Description: Causal moderated mediation analysis using the methods proposed by Qin and Wang (2023) <doi:10.3758/s13428-023-02095-4>. Causal moderated mediation analysis is crucial for investigating how, for whom, and where a treatment is effective by assessing the heterogeneity of mediation mechanism across individuals and contexts. This package enables researchers to estimate and test the conditional and moderated mediation effects, assess their sensitivity to unmeasured pre-treatment confounding, and visualize the results. The package is built based on the quasi-Bayesian Monte Carlo method, because it has relatively better performance at small sample sizes, and its running speed is the fastest. The package is applicable to a treatment of any scale, a binary or continuous mediator, a binary or continuous outcome, and one or more moderators of any scale.
Author: Xu Qin [aut, cre, cph],
Lijuan Wang [ctb]
Maintainer: Xu Qin <xuqin@pitt.edu>
Diff between moderate.mediation versions 0.0.9 dated 2024-04-23 and 0.0.10 dated 2024-05-23
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 + R/moderate.mediation.R | 26 ++++++++++++++++++-------- man/modmed.Rd | 5 +++-- man/summary_modmed.Rd | 7 +++++-- 6 files changed, 37 insertions(+), 22 deletions(-)
More information about moderate.mediation at CRAN
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